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eos/hostdependX86MAC64.git
9 years ago modified: bin/wish/Display2/tclIndex
Takuo Yasunaga [Sat, 4 Oct 2014 18:01:01 +0000 (03:01 +0900)]
modified:   bin/wish/Display2/tclIndex
modified:   hostdepend/X86MAC64/bin/X86MAC64/*
modified:   hostdepend/X86MAC64/lib/X86MAC64/libEosObjects.a
modified:   hostdepend/X86MAC64/lib/X86MAC64/*

9 years agoModified mrcImageNormalizing: Add AssumeAsGaussian
Takuo Yasunaga [Fri, 3 Oct 2014 03:56:09 +0000 (12:56 +0900)]
Modified mrcImageNormalizing: Add AssumeAsGaussian
modified:   mrcImageNormalizing
modified:   include/lmrcImageNormalizing.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageNormalizing.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageNormalizing.h

9 years agoModified: Add usage related to -M
Takuo Yasunaga [Wed, 1 Oct 2014 13:12:32 +0000 (22:12 +0900)]
Modified: Add usage related to -M
modified:   src/Objects/DataManip/bmpFile/inc/bmpFile.h
modified:   src/Objects/DataManip/bmpFile/src/lbmp2mrc.c

9 years agoModified: bmp2mrc supported Y/R/G/B to mono of mrcImage, respecitively.
Takuo Yasunaga [Wed, 1 Oct 2014 13:06:16 +0000 (22:06 +0900)]
Modified: bmp2mrc supported Y/R/G/B to mono of mrcImage, respecitively.
modified:   src/Objects/DataManip/bmpFile/src/lbmp2mrc.c
modified:   src/Tools/filter/bmp2mrc/src/bmp2mrc.c

9 years agoAdd -thres for mrcImageAutoRotationAverage
Takuo Yasunaga [Wed, 1 Oct 2014 11:53:17 +0000 (20:53 +0900)]
Add -thres for mrcImageAutoRotationAverage
modified:   mrcImageAutoRotationAverage
Add lmrcImageAverageOverThreshold
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageAverage.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageAverage.h

9 years agoCreate a new tool of mrcImageAutoRotationAverage:
Takuo Yasunaga [Wed, 1 Oct 2014 11:09:10 +0000 (20:09 +0900)]
Create a new tool of mrcImageAutoRotationAverage:
new file:   mrcImageAutoRotationAverage
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageCorrelation.h
Input/Output separation of struct

9 years agoModifiy mrcImage3DPad: Filament/Sphere/Elliposiod/Rectangle
Takuo Yasunaga [Mon, 29 Sep 2014 10:35:58 +0000 (19:35 +0900)]
Modifiy mrcImage3DPad: Filament/Sphere/Elliposiod/Rectangle
modified:   include/lmrcImage3DPad.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImage3DPad.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImage3DPad.h
modified:   src/Tools/mrcImage/mrcImage3DPad/src/mrcImage3DPad.c

Modify genUtil.h

9 years agoname change eosPointTracker
Takuo Yasunaga [Sat, 13 Sep 2014 06:13:18 +0000 (15:13 +0900)]
name change eosPointTracker

9 years agoFunction Added
Takuo Yasunaga [Sat, 13 Sep 2014 06:06:43 +0000 (15:06 +0900)]
Function Added
new file:   eosPointProjector
Completed
modified:   marker2Dto3DEstimator
Not yet completed
modified:   src/Objects/General/eosPoint/inc/eosPoint.h
new file:   src/Objects/General/eosPoint/src/eosPointProject.c
modified:   src/Objects/General/eosPoint/src/eosPointRead.c
modified:   src/Tools/rec3d/marker2Dto3DEstimator/src/marker2Dto3DEstimator.c

9 years agoBug fixed: ctrl2init0
Takuo Yasunaga [Fri, 12 Sep 2014 11:49:37 +0000 (13:49 +0200)]
Bug fixed: ctrl2init0
modified:   sbin/awk/ctrl2init0.awk

9 years agoBug-fixed:
Takuo Yasunaga [Wed, 10 Sep 2014 09:24:34 +0000 (11:24 +0200)]
Bug-fixed:
lmrcImageCTFCompensation
-flagWin : Sine window

modified:   src/Objects/DataManip/mrcImage/src/lmrcImageCTFCompensation.c

9 years agoUsage Bugfixed: +8 -> 8
Takuo Yasunaga [Wed, 10 Sep 2014 09:14:32 +0000 (11:14 +0200)]
Usage Bugfixed: +8 -> 8
modified:   src/Tools/mrcImage/mrcFFTInfo/src/mrcFFTInfo.c

9 years agomrcFFTInfo: Function Added
Takuo Yasunaga [Wed, 10 Sep 2014 08:54:47 +0000 (10:54 +0200)]
mrcFFTInfo: Function Added
with nDivision and angle: mode 7
with SD : +32
with Log : +64

modified:   include/mrcImage.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcFFTInfo.c
modified:   src/Tools/mrcImage/mrcFFTInfo/Config/OptionControlFile
modified:   src/Tools/mrcImage/mrcFFTInfo/src/mrcFFTInfo.c

9 years agoTicke: #34276
Takuo Yasunaga [Thu, 4 Sep 2014 07:11:20 +0000 (16:11 +0900)]
Ticke: #34276

modified:   src/Tools/mrcImage/mrcImageSiemensStar/Config/OptionControlFile
typechange: src/Tools/mrcImage/mrcImageSiemensStar/Makefile
modified:   src/Tools/mrcImage/mrcImageSiemensStar/doc/Makefile
modified:   src/Tools/mrcImage/mrcImageSiemensStar/inc/mrcImageSiemensStar.h
modified:   src/Tools/mrcImage/mrcImageSiemensStar/src/mrcImageSiemensStar.c
modified:   src/Tools/mrcImage/mrcImageSiemensStar/src/test/Makefile

Not yet:
new file:   env/install-eos.sh
modified:   hostdepend/X86MAC64/src/Tools/Test/cufft/src/X86MAC64/.Depend
modified:   hostdepend/X86MAC64/src/Tools/Test/cufft/src/X86MAC64/Makefile

9 years agoWindow Functions were added.
Takuo Yasunaga [Mon, 11 Aug 2014 02:34:40 +0000 (11:34 +0900)]
Window Functions were added.
src/Objects/DataManip/mrcImage/src/lmrcImageWindowing.c
src/Objects/DataManip/mrcImage/src/lmrcImageWindowing.h
modified:   src/Tools/mrcImage/mrcImageWindowing/Config/OptionControlFile

9 years agolmrcImageMasking: Tools to Objects
Takuo Yasunaga [Sun, 10 Aug 2014 10:32:08 +0000 (19:32 +0900)]
lmrcImageMasking: Tools to Objects
modified:   mrcImageMasking
modified:   include/lmrcImageMasking.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMasking.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMasking.h
modified:   src/Tools/mrcImage/mrcImageMasking/src/mrcImageMasking.c

9 years agoBug fixed:
Takuo Yasunaga [Sat, 9 Aug 2014 20:53:07 +0000 (05:53 +0900)]
Bug fixed:
  mrcImageShapePCA
  When -C was not defined, wrong processing.

9 years agoAdd gnuplot as util/bin
Takuo Yasunaga [Tue, 5 Aug 2014 02:23:13 +0000 (11:23 +0900)]
Add gnuplot as util/bin
At present, we are trying to get utilities by wget/curl.

9 years agoModifiyed mrcImagePixelDataGet: -om (output mode)
Takuo Yasunaga [Tue, 5 Aug 2014 01:17:25 +0000 (10:17 +0900)]
Modifiyed mrcImagePixelDataGet: -om (output mode)
modified:   mrcImagePixelDataGet
modified:   src/Tools/mrcImage/mrcImagePixelDataGet/Config/OptionControlFile
modified:   src/Tools/mrcImage/mrcImagePixelDataGet/src/mrcImagePixelDataGet.c

9 years agoAdd new filters for mrcImageSmoothing
Takuo Yasunaga [Mon, 4 Aug 2014 19:43:48 +0000 (04:43 +0900)]
Add new filters for mrcImageSmoothing
Edge and Line Weights Smoothing
Contrast sensitve weights smoothing
Gradient inverse weighted smoothing

modified:   mrcImageSmoothing
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageSmoothing.c
modified:   src/Tools/mrcImage/mrcImageSmoothing/src/test/Makefile

Add new utils:
cmake
gdb
boost

9 years agoAdd a new command:
Takuo Yasunaga [Fri, 1 Aug 2014 21:06:17 +0000 (06:06 +0900)]
Add a new command:
new file:   mrcImageStack

9 years agoBug fixed:
Takuo Yasunaga [Thu, 31 Jul 2014 18:27:55 +0000 (03:27 +0900)]
Bug fixed:
Change lmrcImageDevidedByReal to lmrcImageDividedByReal.

modified:   src/Objects/DataManip/transform/src/lmrc2Dto3D.c
modified:   src/Tools/mrcImage/mrcImage3DSymmetryFind/src/mrcImage3DSymmetryFind.c
modified:   src/Tools/mrcImage/mrcImageCorrelation/src/mrcImageCorrelation.c
modified:   src/Tools/mrcImage/mrcImageUnbentROI/src/mrcImageUnbentROI.c

Filename Changed
deleted:    src/Objects/DataManip/mrcImage/src/1
deleted:    src/Objects/DataManip/mrcImage/src/lmrcImagePrevitt.c

9 years agoAdd new functions
Takuo Yasunaga [Thu, 31 Jul 2014 18:16:17 +0000 (03:16 +0900)]
Add new functions
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageEdgeEnhancement
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageSmoothing

modified:   include/lmrcImageEdgeEnhancement.h

  Add Negative Laplacian
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageEdgeEnhancement.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageEdgeEnhancement.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageNegativeLaplacian.c

  Add Weighted Mean Filter
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageSmoothing.c

9 years agoMerge branch 'master' of git.sourceforge.jp:/gitroot/eos/base
Takuo Yasunaga [Tue, 29 Jul 2014 13:58:42 +0000 (22:58 +0900)]
Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base

Conflicts:
bin/wish/Display2/tclIndex
src/Tools/mrcImage/Makefile

9 years agoAdd a new funciton and fixed bugs : mrcImageEdgeEnhancement
Takuo Yasunaga [Sat, 12 Jul 2014 13:35:06 +0000 (22:35 +0900)]
Add a new funciton and fixed bugs : mrcImageEdgeEnhancement
modified:   include/lmrcImageEdgeEnhancement.h
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageDifferential.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageEdgeEnhancement.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageEdgeEnhancement.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImagePrevitt.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageRoberts.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageSobel.c
modified:   src/Tools/Config/Define.inc

9 years agomrcImageGetPixels for CUDA/No Cuda
Takuo Yasunaga [Mon, 7 Jul 2014 10:29:01 +0000 (19:29 +0900)]
mrcImageGetPixels for CUDA/No Cuda

modified:   include/mrcImage.h
new file:   include/mrcImageGetPixelsCUDA.h
modified:   src/Config/x86Mac64.inc
modified:   src/Objects/DataManip/mrcImage/inc/mrcImage.h
new file:   src/Objects/DataManip/mrcImage/src/mrcImageGetPixels.c
new file:   src/Objects/DataManip/mrcImage/src/mrcImageGetPixelsCUDA.cu
new file:   src/Objects/DataManip/mrcImage/src/mrcImageGetPixelsCUDA.h
modified:   src/Tools/Config/Define.inc

mrcImagePixelDataGet for CUDA:
modified:   src/Tools/mrcImage/mrcImagePixelDataGet/*

9 years agoBug fixed:
Takuo Yasunaga [Tue, 1 Jul 2014 02:57:36 +0000 (11:57 +0900)]
Bug fixed:
modified:   mrcImageInfo
modified:   src/Objects/DataManip/mrcImage/src/mrcImageInfo.c

9 years agoA new command : for floating. Previously, we have used mrcImagePad for floating
Takuo Yasunaga [Sat, 28 Jun 2014 04:39:24 +0000 (13:39 +0900)]
A new command : for floating. Previously, we have used mrcImagePad for floating
new file:   bin/mrcImageFloating
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageFloating.c
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageFloating.h
new file:   src/Tools/mrcImage/mrcImageFloating/*

9 years agoBug fixed for Color Images:
Takuo Yasunaga [Wed, 25 Jun 2014 21:48:15 +0000 (06:48 +0900)]
Bug fixed for Color Images:
modified:   src/Objects/DataManip/bmpFile/src/bmpFileRead.c
modified:   src/Objects/DataManip/bmpFile/src/lbmp2mrc.c
modified:   src/Tools/filter/bmp2mrc/src/test/Makefile

9 years agoAdd a new function:
Takuo Yasunaga [Wed, 25 Jun 2014 20:48:27 +0000 (05:48 +0900)]
Add a new function:
BMP File Format:
new file:   bin/bmp2mrc
new file:   bin/bmpFileInfo
new file:   include/bmpFile.h
new file:   src/Objects/DataManip/bmpFile/*
new file:   src/Objects/DataManip/bmpFile/inc/bmpFile.h
new file:   src/Objects/DataManip/bmpFile/src/bmpFileInfo.c
new file:   src/Objects/DataManip/bmpFile/src/bmpFileRead.c
new file:   src/Objects/DataManip/bmpFile/src/lbmp2mrc.c

new file:   src/Tools/bmpFile/
new file:   src/Tools/bmpFile/bmpFileInfo/*
new file:   src/Tools/filter/bmp2mrc/*

Modify Makefile to see gcc commands
modified:   src/Config/Template/ObjectsTemplate.Dir/src/ARCH/Makefile
modified:   src/Config/x86Mac64.inc
modified:   src/Objects/DataManip/Makefile

Install ruby1.9.1
new file:   hostdepend/X86MAC64/util/X86MAC64/lib/ruby/1.9.1/*
new file:   hostdepend/X86MAC64/util/X86MAC64/share/ri/1.9.1/*

9 years agoBug fixed:
Takuo Yasunaga [Sun, 22 Jun 2014 22:28:47 +0000 (07:28 +0900)]
Bug fixed:

9 years agoCreate a new command for edge enhancement before edge detection
Takuo Yasunaga [Sun, 22 Jun 2014 15:03:48 +0000 (00:03 +0900)]
Create a new command for edge enhancement before edge detection
new file:   mrcImageEdgeEnhancement
modified:   lmrcImageEdgeEnhancement.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageEdgeEnhancement.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageEdgeEnhancement.h
new file:   src/Objects/DataManip/mrcImage/src/lmrcImagePrevitt.c
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageRoberts.c
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageSobel.c
modified:   src/Tools/Config/Define.inc
modified:   src/Tools/mrcImage/mrcImageEdgeEnhancement/*

9 years agoCreate a new command:
Takuo Yasunaga [Sat, 21 Jun 2014 09:18:51 +0000 (18:18 +0900)]
Create a new command:
new file:   bin/mrcImageDividedByFile
new file:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageDividedByFile
Bug fixed: Devided -> Divided : Spell-missing
modified:   include/mrcImage.h
modified:   src/Objects/DataManip/mrcImage/inc/mrcImage.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageAverage.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMontageCreate.c
modified:   src/Objects/DataManip/mrcImage/src/mrcImageOperation.c
modified:   src/Tools/Config/Define.inc
new file:   src/Tools/mrcImage/mrcImageDividedByFile/*

9 years agoCreate A new tool:
Takuo Yasunaga [Sat, 21 Jun 2014 07:11:26 +0000 (16:11 +0900)]
Create A new tool:
new file:   bin/mrcImageLogicalOperation
new file:   hostdepend/X86MAC64/bin/X86MAC64/mrcImageLogicalOperation
new file:   lmrcImageLogic.h
new file:   lmrcImageLogicalOperation.c
modified:   src/Tools/Config/Define.inc
new file:   src/Tools/mrcImage/mrcImageLogicalOperation/*
Config/Define.inc

9 years agoCreate New Tools:
Takuo Yasunaga [Sat, 21 Jun 2014 04:06:21 +0000 (13:06 +0900)]
Create New Tools:
new file:   mrcImageBottomHatTransform
new file:   mrcImageTopHatTransform
new file:   include/lmrcImageEdgeEnhancement.h
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageBottomHatTransform.c
new file:   src/Objects/DataManip/mrcImage/src/lmrcImageTopHatTransform.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMorphology.h
modified:   src/Tools/Config/Define.inc
modified:   src/Tools/Makefile

Under construction
modified:   include/lmrcImageMorphology.h
new file:   src/Tools/mrcImage/mrcImageEdgeEnhancement/*

9 years agoUnder construction.
Takuo Yasunaga [Fri, 20 Jun 2014 22:37:54 +0000 (07:37 +0900)]
Under construction.
modified:   hostdepend/X86MAC64/src/Tools/rec3d/marker2Dto3DEstimator/src/X86MAC64/marker2Dto3DEstimator
modified:   src/Tools/rec3d/marker2Dto3DEstimator/Config/OptionControlFile
modified:   src/Tools/rec3d/marker2Dto3DEstimator/src/marker2Dto3DEstimator.c

9 years agoNew tools
Takuo Yasunaga [Wed, 11 Jun 2014 04:33:47 +0000 (13:33 +0900)]
New tools
new file:   bin/mrcImageAsProbability
new file:   bin/mrcImageDeconvolution

new file:   bin/marker2Dto3DEstimator

9 years agoAdd weighted Back-projection lmrc2Dto3D: -m 2
Takuo Yasunaga [Sun, 1 Jun 2014 06:38:42 +0000 (15:38 +0900)]
Add weighted Back-projection lmrc2Dto3D: -m 2
modified:   src/Objects/DataManip/transform/src/lmrc2Dto3D.c
modified:   src/Tools/rec3d/marker2Dto3DEstimator/src/marker2Dto3DEstimator.c
modified:   src/Tools/rec3d/mrc2Dto3D/src/mrc2Dto3D.c

9 years agoBug fixed:
Takuo Yasunaga [Fri, 30 May 2014 02:59:29 +0000 (11:59 +0900)]
Bug fixed:
modified:   src/Tools/rec3d/mrcImageInverseRadonTransform/src/mrcImageInverseRadonTransform.c
Under construction:
modified:   src/Tools/rec3d/marker2Dto3DEstimator/src/marker2Dto3DEstimator.c

10 years agoBug fixed:
Takuo Yasunaga [Mon, 26 May 2014 18:38:46 +0000 (03:38 +0900)]
Bug fixed:
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrcImagePad
modified:   hostdepend/X86MAC64/lib/X86MAC64/shared/lmrcImageFFT.sharedo
modified:   hostdepend/X86MAC64/lib/X86MAC64/shared/lmrcImageTriming.sharedo
new file:   hostdepend/X86MAC64/util/X86MAC64/cuda
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageTriming.c

10 years ago modified: env/Eos_env
Takuo Yasunaga [Mon, 26 May 2014 17:46:56 +0000 (02:46 +0900)]
modified:   env/Eos_env
modify util/HOSTDIR/bin
modified:   include/Matrix3D.h
modified:   include/eosPoint.h
modified:   include/genUtil.h
modified:   include/lmrcImageMasking.h
modified:   src/Objects/General/Matrix3D/inc/Matrix3D.h

modified:   src/Objects/General/Memory/inc/Memory.h
modified:   src/Objects/General/Memory/src/memoryAllocate.c
modified:   src/Objects/General/Memory/src/memoryByteSwap.c

new file:   src/Objects/General/eosFunc/*
Add a new object of eosFunc: Sync/Rect

modified:   src/Objects/General/eosPoint/*
Add eosPoint for maker
new file:   bin/eosPointRotation

new file:   src/Tools/rec3d/marker2Dto3DEstimator/*
Not yet completed

10 years ago modified: hostdepend/X86MAC64/*
Takuo Yasunaga [Sun, 18 May 2014 12:04:15 +0000 (21:04 +0900)]
modified:   hostdepend/X86MAC64/*
modified:   include/lmrc2Dto3D.h
modified:   src/Config/x86Mac64.inc
modified:   src/Objects/DataExpress/eosRuby/src/Swig/mkmf.log
modified:   src/Objects/DataExpress/eosRuby/src/Swig/molvieRuby_wrap.c
modified:   src/Objects/General/eosCuda/src/eosCuda.cu
modified:   src/*/*/*/src/Makefile

10 years ago modified: hostdepend/X86MAC64/bin/X86MAC64/tiff2mrc
Takuo Yasunaga [Sun, 11 May 2014 22:36:46 +0000 (07:36 +0900)]
modified:   hostdepend/X86MAC64/bin/X86MAC64/tiff2mrc
modified:   hostdepend/X86MAC64/src/Tools/filter/tiff2mrc/src/X86MAC64/tiff2mrc
modified:   src/Config/x86Mac64.inc
deleted:    src/Objects/General/eosCuda/src/eosCuda.c

10 years ago new file: Integration/Tomography/Makefile.recent
Takuo Yasunaga [Sun, 11 May 2014 22:22:59 +0000 (07:22 +0900)]
new file:   Integration/Tomography/Makefile.recent
modified:   Makefile
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrc2tiff
modified:   hostdepend/X86MAC64/bin/X86MAC64/mrc2gif
modified:   hostdepend/X86MAC64/src/Tools/rec3d/mrc2Dto3D/src/X86MAC64/mrc2Dto3D
added:      libtiff, libgif
added:      cuda
modified:   include/eosPThread.h
modified:   src/Config/x86Mac64.inc
modified:   src/Objects/General/eosPThread/src/eosPThreadInit.c
modified:   src/Objects/General/eosPThread/src/eosPThreadMutex.c
modified:   src/Tools/rec3d/mrc2Dto3D/Config/Define.inc
new file:   util/srcX86MAC64

10 years ago deleted: "\177"
Takuo Yasunaga [Mon, 28 Apr 2014 23:31:28 +0000 (08:31 +0900)]
deleted:    "\177"
deleted:    "\177\177"

10 years ago modified: Makefile
Takuo Yasunaga [Thu, 27 Feb 2014 20:00:25 +0000 (05:00 +0900)]
modified:   Makefile
modified:   bin/wish/ctfDisplay/ctfDisplay.wish
recompiled for X86MAC64:   hostdepend/X86MAC64/bin/X86MAC64/*
recompiled for X86MAC64:   hostdepend/X86MAC64/lib/X86MAC64/shared/lmrcImageSummationCalculate.sharedo

10 years agoRebuild for X68MAC
Takuo Yasunaga [Sat, 15 Jun 2013 05:30:46 +0000 (14:30 +0900)]
Rebuild for X68MAC

10 years agoChange src/Makefile
Takuo Yasunaga [Fri, 31 May 2013 16:36:54 +0000 (01:36 +0900)]
Change src/Makefile

11 years agoApply eosPThread to mrc2Dto3D, -pthread
Takuo Yasunaga [Sat, 25 May 2013 13:18:13 +0000 (22:18 +0900)]
Apply eosPThread to mrc2Dto3D, -pthread
Modify lmrcImageRhoFiltering
Modify x86Mac64.inc
Modify lmrcImageFFT for odd size images
Modify lmrcImageOperation(lmrcImageAdd) for speed up.

11 years agoCreate eosPThread for parallel computing
Takuo Yasunaga [Sun, 12 May 2013 19:16:15 +0000 (04:16 +0900)]
Create eosPThread for parallel computing
new file:   include/eosPThread.h
new file:   src/Objects/General/eosPThread/inc/eosPThread.h
new file:   src/Objects/General/eosPThread/src/eosPThreadCreate.c
new file:   src/Objects/General/eosPThread/src/eosPThreadInit.c
new file:   src/Objects/General/eosPThread/src/eosPThreadJoin.c
new file:   src/Objects/General/eosPThread/src/eosPThreadMutex.c

Apply eosPThread to mrc3Dto2D
modified:   include/lmrc3Dto2D.h
modified:   src/Objects/DataManip/transform/src/lmrc3Dto2D.c
modified:   src/Objects/DataManip/transform/src/lmrc3Dto2D.h
modified:   src/Tools/rec3d/mrc3Dto2D/Config/OptionControlFile
modified:   src/Tools/rec3d/mrc3Dto2D/src/mrc3Dto2D.c

Modified
modified:   src/Objects/DataManip/mrcImage/src/mrcImageWrite.c
    ** Append mode -> Write mode
modified:   src/Objects/DataManip/transform/src/lFETOrientationSearchByFeatureAlignmentInitSet.c
** Apply arrayPCA version up

11 years ago // Modify git command
Takuo Yasunaga [Tue, 7 May 2013 20:01:07 +0000 (05:01 +0900)]
// Modify git command
    modified:   Makefile

    // Create a new command for fitting between two 2D/3D objects using PCA
    new file:   mrcImageShapePCAFit
    new file:   src/Objects/DataManip/mrcImage/src/lmrcImageShapePCA.c
    new file:   src/Objects/DataManip/mrcImage/src/lmrcImageShapePCA.h
    modified:   src/Tools/mrcImage/mrcImageShapePCA/src/mrcImageShapePCA.c

    // Modify Array for PCA. Add average information of each xi
    modified:   src/Objects/General/Array/inc/Array.h
    modified:   src/Objects/General/Array/src/arrayPCA.c
    modified:   src/Objects/General/Array/src/larray2mrc.c

    // Modify Matrix3D for PCA. Add matrix3DfromArray
    modified:   src/Objects/General/Matrix3D/inc/Matrix3D.h
    modified:   src/Objects/General/Matrix3D/src/matrix3DEulerAngleGet.c
    modified:   src/Objects/General/Matrix3D/src/matrix3DUtil.c

    // Modify pdbPCA for changing arrayPCA
    modified:   src/Tools/pdbUtil/pdbPCA/src/pdbPCA.c

    // Bebuilding
    modified:   hostdepend/X86MAC64/...

11 years agoAdd hostdepend/X86MAC64
Takuo Yasunaga [Sun, 5 May 2013 01:20:45 +0000 (10:20 +0900)]
Add hostdepend/X86MAC64

11 years agomodify Makefiles to move hostdependent files to EOS_HOME/hostdepend
Takuo Yasunaga [Sun, 3 Feb 2013 00:09:18 +0000 (09:09 +0900)]
modify Makefiles to move hostdependent files to EOS_HOME/hostdepend

11 years agoseparate host-dependent binaries.
Takuo Yasunaga [Wed, 30 Jan 2013 19:32:46 +0000 (04:32 +0900)]
separate host-dependent binaries.