Modified: Makefile for update, All tools have been updated using make update.

	modified:   Makefile

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diff --git a/bin/X86MAC64/mrcImageDeconvolution b/bin/X86MAC64/mrcImageDeconvolution
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diff --git a/bin/X86MAC64/mrcImagePixelDataGet b/bin/X86MAC64/mrcImagePixelDataGet
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diff --git a/bin/X86MAC64/pdbChargeFit b/bin/X86MAC64/pdbChargeFit
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diff --git a/bin/X86MAC64/pdbListVectorCalc b/bin/X86MAC64/pdbListVectorCalc
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diff --git a/bin/X86MAC64/pdbRhoFitCoiledCoil b/bin/X86MAC64/pdbRhoFitCoiledCoil
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diff --git a/bin/X86MAC64/pdbShapeFit b/bin/X86MAC64/pdbShapeFit
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diff --git a/bin/X86MAC64/pointsSetToPDB b/bin/X86MAC64/pointsSetToPDB
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diff --git a/lib/X86MAC64/libAI.a b/lib/X86MAC64/libAI.a
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diff --git a/lib/X86MAC64/libContour.a b/lib/X86MAC64/libContour.a
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diff --git a/lib/X86MAC64/libMATH.a b/lib/X86MAC64/libMATH.a
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diff --git a/lib/X86MAC64/libTclTk.a b/lib/X86MAC64/libTclTk.a
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diff --git a/lib/X86MAC64/libalsa.a b/lib/X86MAC64/libalsa.a
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diff --git a/lib/X86MAC64/libemData.a b/lib/X86MAC64/libemData.a
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diff --git a/lib/X86MAC64/libeosCuda.a b/lib/X86MAC64/libeosCuda.a
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diff --git a/src/Tools/Coord/pointsSetToPDB/src/X86MAC64/.Depend b/src/Tools/Coord/pointsSetToPDB/src/X86MAC64/.Depend
index 386ee6b..c542c41 100644 (file)
--- a/src/Tools/Coord/pointsSetToPDB/src/X86MAC64/.Depend
+++ b/src/Tools/Coord/pointsSetToPDB/src/X86MAC64/.Depend
@@ -82,6 +82,48 @@ init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
   /usr/include/limits.h /usr/include/machine/limits.h \
   /usr/include/i386/limits.h /usr/include/i386/_limits.h \
   /usr/include/sys/syslimits.h
+pointsSetToPDB.o: pointsSetToPDB.c /usr/include/stdio.h \
+  /usr/include/sys/cdefs.h /usr/include/sys/_symbol_aliasing.h \
+  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+  /usr/include/sys/_types.h /usr/include/machine/_types.h \
+  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+  /usr/include/stdlib.h /usr/include/sys/wait.h \
+  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+  /usr/include/machine/signal.h /usr/include/i386/signal.h \
+  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+  /usr/include/mach/i386/_structs.h \
+  /usr/include/sys/_types/_sigaltstack.h \
+  /usr/include/sys/_types/_ucontext.h \
+  /usr/include/sys/_types/_pthread_attr_t.h \
+  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+  /usr/include/sys/resource.h \
+  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+  /usr/include/machine/endian.h /usr/include/i386/endian.h \
+  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+  /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+  ../inc/../inc/pointsSetToPDB.h /Users/tacyas/Eos/include/genUtil.h \
+  /Users/tacyas/Eos/include/pdbFile.h \
+  /Users/tacyas/Eos/include/Matrix3D.h \
+  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
+  /Users/tacyas/Eos/include/mrcImage.h \
+  /Users/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
   /usr/include/sys/_symbol_aliasing.h \
   /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --git a/src/Tools/Coord/pointsSetToPDB/src/X86MAC64/pointsSetToPDB b/src/Tools/Coord/pointsSetToPDB/src/X86MAC64/pointsSetToPDB
index 1ce16e9..4faffdf 100755 (executable)
Binary files a/src/Tools/Coord/pointsSetToPDB/src/X86MAC64/pointsSetToPDB and b/src/Tools/Coord/pointsSetToPDB/src/X86MAC64/pointsSetToPDB differ

diff --git a/src/Tools/mrcImage/mrc2hdf/src/X86MAC64/.Depend b/src/Tools/mrcImage/mrc2hdf/src/X86MAC64/.Depend
index 01dc073..0333fe0 100644 (file)
--- a/src/Tools/mrcImage/mrc2hdf/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrc2hdf/src/X86MAC64/.Depend
@@ -82,6 +82,110 @@ init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
   /usr/include/limits.h /usr/include/machine/limits.h \
   /usr/include/i386/limits.h /usr/include/i386/_limits.h \
   /usr/include/sys/syslimits.h
+mrc2hdf.o: mrc2hdf.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+  /usr/include/sys/_symbol_aliasing.h \
+  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+  /usr/include/sys/_types.h /usr/include/machine/_types.h \
+  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+  /usr/include/stdlib.h /usr/include/sys/wait.h \
+  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+  /usr/include/machine/signal.h /usr/include/i386/signal.h \
+  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+  /usr/include/mach/i386/_structs.h \
+  /usr/include/sys/_types/_sigaltstack.h \
+  /usr/include/sys/_types/_ucontext.h \
+  /usr/include/sys/_types/_pthread_attr_t.h \
+  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+  /usr/include/sys/resource.h \
+  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+  /usr/include/machine/endian.h /usr/include/i386/endian.h \
+  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+  /usr/include/math.h /Users/tacyas/Eos/util/X86MAC64/include/hdf5.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5public.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5pubconf.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5version.h \
+  /usr/include/sys/types.h /usr/include/sys/_types/_blkcnt_t.h \
+  /usr/include/sys/_types/_blksize_t.h /usr/include/sys/_types/_gid_t.h \
+  /usr/include/sys/_types/_in_addr_t.h \
+  /usr/include/sys/_types/_in_port_t.h /usr/include/sys/_types/_ino_t.h \
+  /usr/include/sys/_types/_ino64_t.h /usr/include/sys/_types/_key_t.h \
+  /usr/include/sys/_types/_nlink_t.h /usr/include/sys/_types/_clock_t.h \
+  /usr/include/sys/_types/_time_t.h \
+  /usr/include/sys/_types/_useconds_t.h \
+  /usr/include/sys/_types/_suseconds_t.h \
+  /usr/include/sys/_types/_rsize_t.h /usr/include/sys/_types/_errno_t.h \
+  /usr/include/sys/_types/_fd_def.h \
+  /usr/include/sys/_types/_fd_setsize.h \
+  /usr/include/sys/_types/_fd_set.h /usr/include/sys/_types/_fd_clr.h \
+  /usr/include/sys/_types/_fd_zero.h /usr/include/sys/_types/_fd_isset.h \
+  /usr/include/sys/_types/_fd_copy.h \
+  /usr/include/sys/_types/_pthread_cond_t.h \
+  /usr/include/sys/_types/_pthread_condattr_t.h \
+  /usr/include/sys/_types/_pthread_mutex_t.h \
+  /usr/include/sys/_types/_pthread_mutexattr_t.h \
+  /usr/include/sys/_types/_pthread_once_t.h \
+  /usr/include/sys/_types/_pthread_rwlock_t.h \
+  /usr/include/sys/_types/_pthread_rwlockattr_t.h \
+  /usr/include/sys/_types/_pthread_t.h \
+  /usr/include/sys/_types/_pthread_key_t.h \
+  /usr/include/sys/_types/_fsblkcnt_t.h \
+  /usr/include/sys/_types/_fsfilcnt_t.h \
+  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/limits.h \
+  /usr/include/limits.h /usr/include/machine/limits.h \
+  /usr/include/i386/limits.h /usr/include/i386/_limits.h \
+  /usr/include/sys/syslimits.h /usr/include/inttypes.h \
+  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stddef.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5api_adpt.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Apublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Ipublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Opublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Lpublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Tpublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5ACpublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Cpublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Dpublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Epublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Epubgen.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Fpublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5FDpublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Gpublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5MMpublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Ppublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Zpublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Rpublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5Spublic.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5FDcore.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5FDfamily.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5FDlog.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5FDmpi.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5FDmpio.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5FDmulti.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5FDsec2.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5FDstdio.h \
+  /Users/tacyas/Eos/util/X86MAC64/include/H5FDdirect.h \
+  /Users/tacyas/Eos/include/mrcImage.h \
+  /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/string.h \
+  /Users/tacyas/Eos/include/Matrix3D.h \
+  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
+  /Users/tacyas/Eos/include/ctfInfo.h ../inc/config.h \
+  ../inc/../inc/mrc2hdf.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
   /usr/include/sys/_symbol_aliasing.h \
   /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --git a/src/Tools/mrcImage/mrcImageAddValue/src/X86MAC64/mrcImageAddValue b/src/Tools/mrcImage/mrcImageAddValue/src/X86MAC64/mrcImageAddValue
index 5bb1da5..1fe6719 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImageAddValue/src/X86MAC64/mrcImageAddValue and b/src/Tools/mrcImage/mrcImageAddValue/src/X86MAC64/mrcImageAddValue differ

diff --git a/src/Tools/mrcImage/mrcImageDeconvolution/src/X86MAC64/mrcImageDeconvolution b/src/Tools/mrcImage/mrcImageDeconvolution/src/X86MAC64/mrcImageDeconvolution
index 51ccf18..0834067 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImageDeconvolution/src/X86MAC64/mrcImageDeconvolution and b/src/Tools/mrcImage/mrcImageDeconvolution/src/X86MAC64/mrcImageDeconvolution differ

diff --git a/src/Tools/mrcImage/mrcImagePixelDataGet/src/X86MAC64/mrcImagePixelDataGet b/src/Tools/mrcImage/mrcImagePixelDataGet/src/X86MAC64/mrcImagePixelDataGet
index 9ec6da4..730eda2 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImagePixelDataGet/src/X86MAC64/mrcImagePixelDataGet and b/src/Tools/mrcImage/mrcImagePixelDataGet/src/X86MAC64/mrcImagePixelDataGet differ

diff --git a/src/Tools/pdbUtil/pdbChargeFit/src/X86MAC64/pdbChargeFit b/src/Tools/pdbUtil/pdbChargeFit/src/X86MAC64/pdbChargeFit
index f3b009b..4279481 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbChargeFit/src/X86MAC64/pdbChargeFit and b/src/Tools/pdbUtil/pdbChargeFit/src/X86MAC64/pdbChargeFit differ

diff --git a/src/Tools/pdbUtil/pdbListVectorCalc/src/X86MAC64/.Depend b/src/Tools/pdbUtil/pdbListVectorCalc/src/X86MAC64/.Depend
index b08cdf6..bdc84a7 100644 (file)
--- a/src/Tools/pdbUtil/pdbListVectorCalc/src/X86MAC64/.Depend
+++ b/src/Tools/pdbUtil/pdbListVectorCalc/src/X86MAC64/.Depend
@@ -82,6 +82,48 @@ init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
   /usr/include/limits.h /usr/include/machine/limits.h \
   /usr/include/i386/limits.h /usr/include/i386/_limits.h \
   /usr/include/sys/syslimits.h
+pdbListVectorCalc.o: pdbListVectorCalc.c /usr/include/stdio.h \
+  /usr/include/sys/cdefs.h /usr/include/sys/_symbol_aliasing.h \
+  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+  /usr/include/sys/_types.h /usr/include/machine/_types.h \
+  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+  /usr/include/stdlib.h /usr/include/sys/wait.h \
+  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+  /usr/include/machine/signal.h /usr/include/i386/signal.h \
+  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+  /usr/include/mach/i386/_structs.h \
+  /usr/include/sys/_types/_sigaltstack.h \
+  /usr/include/sys/_types/_ucontext.h \
+  /usr/include/sys/_types/_pthread_attr_t.h \
+  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+  /usr/include/sys/resource.h \
+  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+  /usr/include/machine/endian.h /usr/include/i386/endian.h \
+  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+  /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+  ../inc/../inc/pdbListVectorCalc.h /Users/tacyas/Eos/include/genUtil.h \
+  /Users/tacyas/Eos/include/pdbFile.h \
+  /Users/tacyas/Eos/include/Matrix3D.h \
+  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
+  /Users/tacyas/Eos/include/mrcImage.h \
+  /Users/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
   /usr/include/sys/_symbol_aliasing.h \
   /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --git a/src/Tools/pdbUtil/pdbRhoFitCoiledCoil/src/X86MAC64/.Depend b/src/Tools/pdbUtil/pdbRhoFitCoiledCoil/src/X86MAC64/.Depend
index 06be47e..e7f2080 100644 (file)
--- a/src/Tools/pdbUtil/pdbRhoFitCoiledCoil/src/X86MAC64/.Depend
+++ b/src/Tools/pdbUtil/pdbRhoFitCoiledCoil/src/X86MAC64/.Depend
@@ -84,6 +84,49 @@ init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
   /usr/include/limits.h /usr/include/machine/limits.h \
   /usr/include/i386/limits.h /usr/include/i386/_limits.h \
   /usr/include/sys/syslimits.h
+pdbRhoFitCoiledCoil.o: pdbRhoFitCoiledCoil.c /usr/include/stdio.h \
+  /usr/include/sys/cdefs.h /usr/include/sys/_symbol_aliasing.h \
+  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+  /usr/include/sys/_types.h /usr/include/machine/_types.h \
+  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+  /usr/include/stdlib.h /usr/include/sys/wait.h \
+  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+  /usr/include/machine/signal.h /usr/include/i386/signal.h \
+  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+  /usr/include/mach/i386/_structs.h \
+  /usr/include/sys/_types/_sigaltstack.h \
+  /usr/include/sys/_types/_ucontext.h \
+  /usr/include/sys/_types/_pthread_attr_t.h \
+  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+  /usr/include/sys/resource.h \
+  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+  /usr/include/machine/endian.h /usr/include/i386/endian.h \
+  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+  /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+  ../inc/../inc/pdbRhoFitCoiledCoil.h \
+  /Users/tacyas/Eos/include/genUtil.h \
+  /Users/tacyas/Eos/include/pdbFile.h \
+  /Users/tacyas/Eos/include/Matrix3D.h \
+  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
+  /Users/tacyas/Eos/include/mrcImage.h \
+  /Users/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
   /usr/include/sys/_symbol_aliasing.h \
   /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --git a/src/Tools/pdbUtil/pdbShapeFit/src/X86MAC64/pdbShapeFit b/src/Tools/pdbUtil/pdbShapeFit/src/X86MAC64/pdbShapeFit
index 20fc5ed..3060d61 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbShapeFit/src/X86MAC64/pdbShapeFit and b/src/Tools/pdbUtil/pdbShapeFit/src/X86MAC64/pdbShapeFit differ