modified: env/Eos_env

	modified:   mrcImage3DPad
	add:        gsl as a free numerical analysis
	modified:   sbin/dotSourceInMakefileCreate
	modified:   src/Makefile
	typechange: src/Tools/Makefile
	modified:   src/Tools/*/*/src/Makefile

diff --git a/bin/X86LINUX64/mrcImage3DPad b/bin/X86LINUX64/mrcImage3DPad
index e9e53c2..1cfd649 100755 (executable)
Binary files a/bin/X86LINUX64/mrcImage3DPad and b/bin/X86LINUX64/mrcImage3DPad differ

diff --git a/src/Objects/DataExpress/Contour/src/X86LINUX64/libContour.a b/src/Objects/DataExpress/Contour/src/X86LINUX64/libContour.a
index 9fbcc5d..c1b8827 100644 (file)
Binary files a/src/Objects/DataExpress/Contour/src/X86LINUX64/libContour.a and b/src/Objects/DataExpress/Contour/src/X86LINUX64/libContour.a differ

diff --git a/src/Objects/DataExpress/TclTk/src/X86LINUX64/libTclTk.a b/src/Objects/DataExpress/TclTk/src/X86LINUX64/libTclTk.a
index 826845c..1b7fd78 100644 (file)
Binary files a/src/Objects/DataExpress/TclTk/src/X86LINUX64/libTclTk.a and b/src/Objects/DataExpress/TclTk/src/X86LINUX64/libTclTk.a differ

diff --git a/src/Objects/DataExpress/avsFile/src/X86LINUX64/libavsFile.a b/src/Objects/DataExpress/avsFile/src/X86LINUX64/libavsFile.a
index daf0f60..da6d6bb 100644 (file)
Binary files a/src/Objects/DataExpress/avsFile/src/X86LINUX64/libavsFile.a and b/src/Objects/DataExpress/avsFile/src/X86LINUX64/libavsFile.a differ

diff --git a/src/Objects/DataExpress/gifFile/src/X86LINUX64/libgifFile.a b/src/Objects/DataExpress/gifFile/src/X86LINUX64/libgifFile.a
index b2728dd..75b0898 100644 (file)
Binary files a/src/Objects/DataExpress/gifFile/src/X86LINUX64/libgifFile.a and b/src/Objects/DataExpress/gifFile/src/X86LINUX64/libgifFile.a differ

diff --git a/src/Tools/Cluster/clusterLog2ToLog/src/X86LINUX64/.Depend b/src/Tools/Cluster/clusterLog2ToLog/src/X86LINUX64/.Depend
index de41aa8..391a27f 100755 (executable)
--- a/src/Tools/Cluster/clusterLog2ToLog/src/X86LINUX64/.Depend
+++ b/src/Tools/Cluster/clusterLog2ToLog/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/clusterLog2ToLog.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ clusterLog2ToLog.o: clusterLog2ToLog.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -50,24 +52,25 @@ clusterLog2ToLog.o: clusterLog2ToLog.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/clusterLog2ToLog.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Cluster.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,26 +81,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/clusterLog2ToLog.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/Cluster/clusterLogASCII2Binary/src/X86LINUX64/.Depend b/src/Tools/Cluster/clusterLogASCII2Binary/src/X86LINUX64/.Depend
index 6ee9e31..59c183f 100644 (file)
--- a/src/Tools/Cluster/clusterLogASCII2Binary/src/X86LINUX64/.Depend
+++ b/src/Tools/Cluster/clusterLogASCII2Binary/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/clusterLogASCII2Binary.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ clusterLogASCII2Binary.o: clusterLogASCII2Binary.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -50,24 +52,25 @@ clusterLogASCII2Binary.o: clusterLogASCII2Binary.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/clusterLogASCII2Binary.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Cluster.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,26 +81,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/clusterLogASCII2Binary.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/Cluster/clusterShow/src/X86LINUX64/.Depend b/src/Tools/Cluster/clusterShow/src/X86LINUX64/.Depend
index edc6beb..e3a9949 100755 (executable)
--- a/src/Tools/Cluster/clusterShow/src/X86LINUX64/.Depend
+++ b/src/Tools/Cluster/clusterShow/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/clusterShow.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 clusterShow.o: clusterShow.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,25 +51,26 @@ clusterShow.o: clusterShow.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/clusterShow.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/Cluster.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,26 +81,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/clusterShow.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/Coord/coordRotation/src/X86LINUX64/.Depend b/src/Tools/Coord/coordRotation/src/X86LINUX64/.Depend
index 0249ca2..209bfda 100644 (file)
--- a/src/Tools/Coord/coordRotation/src/X86LINUX64/.Depend
+++ b/src/Tools/Coord/coordRotation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/coordRotation.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ coordRotation.o: coordRotation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -50,25 +52,27 @@ coordRotation.o: coordRotation.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/coordRotation.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,26 +83,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/coordRotation.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -106,14 +111,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/X86LINUX64/.Depend b/src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/X86LINUX64/.Depend
index 6f81e58..aa6819d 100644 (file)
--- a/src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/X86LINUX64/.Depend
+++ b/src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/X86LINUX64/.Depend
@@ -541,3 +541,110 @@ dcdAtomChangeDistanceFromAtom.o: dcdAtomChangeDistanceFromAtom.cc \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
+dcdAtomChangeDistanceFromAtom.o: dcdAtomChangeDistanceFromAtom.cc \
+ /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/dcdAtomChangeDistanceFromAtom.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/include/DCDFile.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++config.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/os_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/cpu_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ios \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iosfwd \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stringfwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/postypes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwchar \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cstddef \
+ /usr/include/bits/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/char_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_algobase.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/functexcept.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/cpp_type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/numeric_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_pair.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/move.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/concept_check.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_types.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_funcs.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/debug/debug.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/localefwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/clocale \
+ /usr/include/locale.h /usr/include/bits/locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cctype \
+ /usr/include/ctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ios_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/atomicity.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr-default.h \
+ /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
+ /usr/include/bits/setjmp.h /usr/include/unistd.h \
+ /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
+ /usr/include/bits/confname.h /usr/include/getopt.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/atomic_word.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/string \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/new_allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/new \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream_insert.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cxxabi-forced.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_function.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/backward/binders.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/initializer_list \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/streambuf \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwctype \
+ /usr/include/wctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_inline.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/istream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/istream.tcc \
+ /home/people/tacyas/Eos/include/pdbFile.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdAtomDistanceDistribution/src/X86LINUX64/.Depend b/src/Tools/DCDFile/dcdAtomDistanceDistribution/src/X86LINUX64/.Depend
index f3a467d..45a58a5 100644 (file)
--- a/src/Tools/DCDFile/dcdAtomDistanceDistribution/src/X86LINUX64/.Depend
+++ b/src/Tools/DCDFile/dcdAtomDistanceDistribution/src/X86LINUX64/.Depend
@@ -541,3 +541,110 @@ dcdAtomDistanceDistribution.o: dcdAtomDistanceDistribution.cc \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
+dcdAtomDistanceDistribution.o: dcdAtomDistanceDistribution.cc \
+ /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/dcdAtomDistanceDistribution.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/include/DCDFile.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++config.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/os_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/cpu_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ios \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iosfwd \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stringfwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/postypes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwchar \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cstddef \
+ /usr/include/bits/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/char_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_algobase.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/functexcept.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/cpp_type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/numeric_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_pair.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/move.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/concept_check.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_types.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_funcs.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/debug/debug.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/localefwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/clocale \
+ /usr/include/locale.h /usr/include/bits/locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cctype \
+ /usr/include/ctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ios_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/atomicity.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr-default.h \
+ /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
+ /usr/include/bits/setjmp.h /usr/include/unistd.h \
+ /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
+ /usr/include/bits/confname.h /usr/include/getopt.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/atomic_word.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/string \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/new_allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/new \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream_insert.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cxxabi-forced.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_function.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/backward/binders.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/initializer_list \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/streambuf \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwctype \
+ /usr/include/wctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_inline.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/istream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/istream.tcc \
+ /home/people/tacyas/Eos/include/pdbFile.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdCompareCA/src/X86LINUX64/.Depend b/src/Tools/DCDFile/dcdCompareCA/src/X86LINUX64/.Depend
index 22909ca..fb9b645 100644 (file)
--- a/src/Tools/DCDFile/dcdCompareCA/src/X86LINUX64/.Depend
+++ b/src/Tools/DCDFile/dcdCompareCA/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/dcdCompareCA.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/dcdCompareCA.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -76,14 +79,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/DCDFile/dcdDistanceAtomBetweenAtom/src/X86LINUX64/.Depend b/src/Tools/DCDFile/dcdDistanceAtomBetweenAtom/src/X86LINUX64/.Depend
index 83b5a89..19d2c72 100644 (file)
--- a/src/Tools/DCDFile/dcdDistanceAtomBetweenAtom/src/X86LINUX64/.Depend
+++ b/src/Tools/DCDFile/dcdDistanceAtomBetweenAtom/src/X86LINUX64/.Depend
@@ -541,3 +541,110 @@ dcdDistanceAtomBetweenAtom.o: dcdDistanceAtomBetweenAtom.cc \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
+dcdDistanceAtomBetweenAtom.o: dcdDistanceAtomBetweenAtom.cc \
+ /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/dcdDistanceAtomBetweenAtom.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/include/DCDFile.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++config.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/os_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/cpu_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ios \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iosfwd \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stringfwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/postypes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwchar \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cstddef \
+ /usr/include/bits/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/char_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_algobase.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/functexcept.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/cpp_type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/numeric_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_pair.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/move.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/concept_check.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_types.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_funcs.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/debug/debug.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/localefwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/clocale \
+ /usr/include/locale.h /usr/include/bits/locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cctype \
+ /usr/include/ctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ios_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/atomicity.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr-default.h \
+ /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
+ /usr/include/bits/setjmp.h /usr/include/unistd.h \
+ /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
+ /usr/include/bits/confname.h /usr/include/getopt.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/atomic_word.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/string \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/new_allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/new \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream_insert.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cxxabi-forced.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_function.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/backward/binders.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/initializer_list \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/streambuf \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwctype \
+ /usr/include/wctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_inline.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/istream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/istream.tcc \
+ /home/people/tacyas/Eos/include/pdbFile.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdFilePrint/src/X86LINUX64/.Depend b/src/Tools/DCDFile/dcdFilePrint/src/X86LINUX64/.Depend
index d913538..516e54a 100644 (file)
--- a/src/Tools/DCDFile/dcdFilePrint/src/X86LINUX64/.Depend
+++ b/src/Tools/DCDFile/dcdFilePrint/src/X86LINUX64/.Depend
@@ -540,3 +540,110 @@ dcdFilePrint.o: dcdFilePrint.cc /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
+dcdFilePrint.o: dcdFilePrint.cc /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/dcdFilePrint.h /home/people/tacyas/Eos/include/genUtil.h \
+ /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/include/DCDFile.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++config.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/os_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/cpu_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ios \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iosfwd \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stringfwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/postypes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwchar \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cstddef \
+ /usr/include/bits/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/char_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_algobase.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/functexcept.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/cpp_type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/numeric_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_pair.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/move.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/concept_check.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_types.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_funcs.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/debug/debug.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/localefwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/clocale \
+ /usr/include/locale.h /usr/include/bits/locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cctype \
+ /usr/include/ctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ios_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/atomicity.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr-default.h \
+ /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
+ /usr/include/bits/setjmp.h /usr/include/unistd.h \
+ /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
+ /usr/include/bits/confname.h /usr/include/getopt.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/atomic_word.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/string \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/new_allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/new \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream_insert.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cxxabi-forced.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_function.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/backward/binders.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/initializer_list \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/streambuf \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwctype \
+ /usr/include/wctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_inline.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/istream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/istream.tcc \
+ /home/people/tacyas/Eos/include/pdbFile.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdInfo/src/X86LINUX64/.Depend b/src/Tools/DCDFile/dcdInfo/src/X86LINUX64/.Depend
index 03c1277..e6c0152 100644 (file)
--- a/src/Tools/DCDFile/dcdInfo/src/X86LINUX64/.Depend
+++ b/src/Tools/DCDFile/dcdInfo/src/X86LINUX64/.Depend
@@ -532,3 +532,108 @@ dcdInfo.o: dcdInfo.cc /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
+dcdInfo.o: dcdInfo.cc /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/dcdInfo.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/include/DCDFile.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++config.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/os_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/cpu_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ios \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iosfwd \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stringfwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/postypes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwchar \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cstddef \
+ /usr/include/bits/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/char_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_algobase.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/functexcept.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/cpp_type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/numeric_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_pair.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/move.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/concept_check.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_types.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_funcs.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/debug/debug.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/localefwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/clocale \
+ /usr/include/locale.h /usr/include/bits/locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cctype \
+ /usr/include/ctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ios_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/atomicity.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr-default.h \
+ /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
+ /usr/include/bits/setjmp.h /usr/include/unistd.h \
+ /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
+ /usr/include/bits/confname.h /usr/include/getopt.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/atomic_word.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/string \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/new_allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/new \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream_insert.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cxxabi-forced.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_function.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/backward/binders.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/initializer_list \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/streambuf \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwctype \
+ /usr/include/wctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_inline.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/istream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/istream.tcc \
+ /home/people/tacyas/Eos/include/pdbFile.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdSelectAtoms/src/X86LINUX64/.Depend b/src/Tools/DCDFile/dcdSelectAtoms/src/X86LINUX64/.Depend
index e14ef39..5e45f19 100644 (file)
--- a/src/Tools/DCDFile/dcdSelectAtoms/src/X86LINUX64/.Depend
+++ b/src/Tools/DCDFile/dcdSelectAtoms/src/X86LINUX64/.Depend
@@ -541,3 +541,110 @@ dcdSelectAtoms.o: dcdSelectAtoms.cc /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
+dcdSelectAtoms.o: dcdSelectAtoms.cc /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/dcdSelectAtoms.h /home/people/tacyas/Eos/include/genUtil.h \
+ /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/include/DCDFile.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++config.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/os_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/cpu_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ios \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iosfwd \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stringfwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/postypes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwchar \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cstddef \
+ /usr/include/bits/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/char_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_algobase.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/functexcept.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/cpp_type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/numeric_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_pair.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/move.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/concept_check.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_types.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_funcs.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/debug/debug.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/localefwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/clocale \
+ /usr/include/locale.h /usr/include/bits/locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cctype \
+ /usr/include/ctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ios_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/atomicity.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr-default.h \
+ /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
+ /usr/include/bits/setjmp.h /usr/include/unistd.h \
+ /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
+ /usr/include/bits/confname.h /usr/include/getopt.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/atomic_word.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/string \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/new_allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/new \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream_insert.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cxxabi-forced.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_function.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/backward/binders.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/initializer_list \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/streambuf \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwctype \
+ /usr/include/wctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_inline.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/istream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/istream.tcc \
+ /home/people/tacyas/Eos/include/pdbFile.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdSerectAtom/src/X86LINUX64/.Depend b/src/Tools/DCDFile/dcdSerectAtom/src/X86LINUX64/.Depend
index 5fda72e..84e34fe 100644 (file)
--- a/src/Tools/DCDFile/dcdSerectAtom/src/X86LINUX64/.Depend
+++ b/src/Tools/DCDFile/dcdSerectAtom/src/X86LINUX64/.Depend
@@ -540,3 +540,110 @@ dcdSerectAtom.o: dcdSerectAtom.cc /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
+dcdSerectAtom.o: dcdSerectAtom.cc /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/dcdSerectAtom.h /home/people/tacyas/Eos/include/genUtil.h \
+ /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/include/DCDFile.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++config.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/os_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/cpu_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ios \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iosfwd \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stringfwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/postypes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwchar \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cstddef \
+ /usr/include/bits/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/char_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_algobase.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/functexcept.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/cpp_type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/numeric_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_pair.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/move.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/concept_check.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_types.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_funcs.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/debug/debug.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/localefwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/clocale \
+ /usr/include/locale.h /usr/include/bits/locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cctype \
+ /usr/include/ctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ios_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/atomicity.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr-default.h \
+ /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
+ /usr/include/bits/setjmp.h /usr/include/unistd.h \
+ /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
+ /usr/include/bits/confname.h /usr/include/getopt.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/atomic_word.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/string \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/new_allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/new \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream_insert.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cxxabi-forced.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_function.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/backward/binders.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/initializer_list \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/streambuf \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwctype \
+ /usr/include/wctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_inline.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/istream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/istream.tcc \
+ /home/people/tacyas/Eos/include/pdbFile.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdTimeSeriesBehavior/src/X86LINUX64/.Depend b/src/Tools/DCDFile/dcdTimeSeriesBehavior/src/X86LINUX64/.Depend
index 7adb36a..1c906d7 100644 (file)
--- a/src/Tools/DCDFile/dcdTimeSeriesBehavior/src/X86LINUX64/.Depend
+++ b/src/Tools/DCDFile/dcdTimeSeriesBehavior/src/X86LINUX64/.Depend
@@ -541,3 +541,110 @@ dcdTimeSeriesBehavior.o: dcdTimeSeriesBehavior.cc /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
+dcdTimeSeriesBehavior.o: dcdTimeSeriesBehavior.cc /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/dcdTimeSeriesBehavior.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/include/DCDFile.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++config.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/os_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/cpu_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ios \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iosfwd \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stringfwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/postypes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwchar \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cstddef \
+ /usr/include/bits/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/char_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_algobase.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/functexcept.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/exception_defines.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/cpp_type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/type_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/numeric_traits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_pair.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/move.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/concept_check.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_types.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator_base_funcs.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/debug/debug.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/localefwd.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/clocale \
+ /usr/include/locale.h /usr/include/bits/locale.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cctype \
+ /usr/include/ctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ios_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/atomicity.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/gthr-default.h \
+ /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
+ /usr/include/bits/setjmp.h /usr/include/unistd.h \
+ /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
+ /usr/include/bits/confname.h /usr/include/getopt.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/atomic_word.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/string \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/c++allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ext/new_allocator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/new \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream_insert.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cxxabi-forced.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/stl_function.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/backward/binders.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/initializer_list \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_string.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_classes.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/streambuf \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/cwctype \
+ /usr/include/wctype.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_base.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/streambuf_iterator.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/x86_64-redhat-linux/bits/ctype_inline.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/locale_facets.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/basic_ios.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/istream \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/istream.tcc \
+ /home/people/tacyas/Eos/include/pdbFile.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/Integration/Display2/src/X86LINUX64/.Depend b/src/Tools/Integration/Display2/src/X86LINUX64/.Depend
index a35ab4a..d9fbfe5 100644 (file)
--- a/src/Tools/Integration/Display2/src/X86LINUX64/.Depend
+++ b/src/Tools/Integration/Display2/src/X86LINUX64/.Depend
@@ -4,11 +4,12 @@ Display2.o: Display2.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,7 +20,7 @@ Display2.o: Display2.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tcl.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tclDecls.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tclPlatDecls.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -28,6 +29,7 @@ Display2.o: Display2.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tk.h \
  /usr/include/X11/Xlib.h /usr/include/X11/X.h \
  /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
@@ -49,11 +51,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -64,7 +67,7 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/Display2.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -75,11 +78,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -90,7 +94,7 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/Display2.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -101,11 +105,12 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -116,11 +121,12 @@ util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/Integration/Display3/src/X86LINUX64/.Depend b/src/Tools/Integration/Display3/src/X86LINUX64/.Depend
index 93c9021..6a1d124 100644 (file)
--- a/src/Tools/Integration/Display3/src/X86LINUX64/.Depend
+++ b/src/Tools/Integration/Display3/src/X86LINUX64/.Depend
@@ -3,3 +3,4 @@ util.o: util.cc
 util.o: util.cc
 util.o: util.cc
 util.o: util.cc
+util.o: util.cc

diff --git a/src/Tools/Integration/X86LINUX64/.Depend b/src/Tools/Integration/X86LINUX64/.Depend
index d4d9e1d..90954ce 100644 (file)
--- a/src/Tools/Integration/X86LINUX64/.Depend
+++ b/src/Tools/Integration/X86LINUX64/.Depend
@@ -110,3 +110,19 @@ util.o: util.cc /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h ../inc/config.h ../inc/../inc/Eos.h
+util.o: util.cc /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h ../inc/config.h ../inc/../inc/Eos.h

diff --git a/src/Tools/Integration/ctfDisplay/src/X86LINUX64/.Depend b/src/Tools/Integration/ctfDisplay/src/X86LINUX64/.Depend
index f78fe51..9a8e53f 100644 (file)
--- a/src/Tools/Integration/ctfDisplay/src/X86LINUX64/.Depend
+++ b/src/Tools/Integration/ctfDisplay/src/X86LINUX64/.Depend
@@ -1,7 +1,7 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
@@ -19,19 +19,64 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ctfDisplay.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
+ctfDisplay.o: ctfDisplay.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ctfDisplay.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/tcl.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/tclDecls.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/tclPlatDecls.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/tk.h \
+ /usr/include/X11/Xlib.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/tkDecls.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/blt.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/bltVector.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/bltHash.h \
+ /usr/include/inttypes.h /usr/include/stdint.h /usr/include/bits/wchar.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/bltPool.h \
+ /home/people/tacyas/Eos/include/tkImgFmtMRC.h \
+ /home/people/tacyas/Eos/include/Memory.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/lmrcFFTInfo.h \
+ /home/people/tacyas/Eos/include/tkctfInfo.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
@@ -49,19 +94,16 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ctfDisplay.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
@@ -77,7 +119,7 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \

diff --git a/src/Tools/Integration/imagesClustering/src/X86LINUX64/.Depend b/src/Tools/Integration/imagesClustering/src/X86LINUX64/.Depend
index 5d09a99..d5f3f46 100755 (executable)
--- a/src/Tools/Integration/imagesClustering/src/X86LINUX64/.Depend
+++ b/src/Tools/Integration/imagesClustering/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/imagesClustering.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/imagesClustering.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -76,14 +79,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/Integration/imagesView/src/X86LINUX64/.Depend b/src/Tools/Integration/imagesView/src/X86LINUX64/.Depend
index 3926a82..3a81028 100644 (file)
--- a/src/Tools/Integration/imagesView/src/X86LINUX64/.Depend
+++ b/src/Tools/Integration/imagesView/src/X86LINUX64/.Depend
@@ -4,11 +4,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,7 +20,7 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/imagesView.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -30,11 +31,12 @@ imagesView.o: imagesView.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -45,7 +47,7 @@ imagesView.o: imagesView.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tcl.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tclDecls.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tclPlatDecls.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -54,6 +56,7 @@ imagesView.o: imagesView.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tk.h \
  /usr/include/X11/Xlib.h /usr/include/X11/X.h \
  /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
@@ -75,11 +78,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -90,7 +94,7 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/imagesView.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -101,11 +105,12 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -116,11 +121,12 @@ util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/ctfDeterminationFromMultiImage/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/ctfDeterminationFromMultiImage/src/X86LINUX64/.Depend
index 3f0d2e6..7bcdf42 100644 (file)
--- a/src/Tools/ctfInfo/ctfDeterminationFromMultiImage/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/ctfDeterminationFromMultiImage/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfDeterminationFromMultiImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ ctfDeterminationFromMultiImage.o: ctfDeterminationFromMultiImage.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -50,24 +52,25 @@ ctfDeterminationFromMultiImage.o: ctfDeterminationFromMultiImage.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfDeterminationFromMultiImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,26 +81,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfDeterminationFromMultiImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/ctfDeterminationFromPhaseComparison/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/ctfDeterminationFromPhaseComparison/src/X86LINUX64/.Depend
index dd26c74..f776fe8 100644 (file)
--- a/src/Tools/ctfInfo/ctfDeterminationFromPhaseComparison/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/ctfDeterminationFromPhaseComparison/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfDeterminationFromPhaseComparison.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -33,14 +34,15 @@ ctfDeterminationFromPhaseComparison.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -51,30 +53,32 @@ ctfDeterminationFromPhaseComparison.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfDeterminationFromPhaseComparison.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  ../inc/ctfDeterminationFromPhaseComparison.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -85,26 +89,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfDeterminationFromPhaseComparison.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/X86LINUX64/.Depend
index f75cb67..32de811 100644 (file)
--- a/src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfDeterminationFromThonRing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ ctfDeterminationFromThonRing.o: ctfDeterminationFromThonRing.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -50,30 +52,32 @@ ctfDeterminationFromThonRing.o: ctfDeterminationFromThonRing.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfDeterminationFromThonRing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -84,26 +88,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfDeterminationFromThonRing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/ctfDetermine/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/ctfDetermine/src/X86LINUX64/.Depend
index 3bb13c7..9899298 100644 (file)
--- a/src/Tools/ctfInfo/ctfDetermine/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/ctfDetermine/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfDetermine.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ ctfDetermine.o: ctfDetermine.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -50,18 +52,19 @@ ctfDetermine.o: ctfDetermine.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfDetermine.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/lctfDetermination.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/powerspectraTangentLine.h \
  /home/people/tacyas/Eos/include/lctfDetermination.h \
  /home/people/tacyas/Eos/include/lmrcFSInfoScatteringAngularDistributionAverageSection.h \
@@ -75,14 +78,15 @@ ctfDetermine.o: ctfDetermine.c /usr/include/stdio.h \
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -93,26 +97,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfDetermine.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -120,14 +125,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/ctfEnvelopFunction/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/ctfEnvelopFunction/src/X86LINUX64/.Depend
index eecdd0c..0d1ae5f 100644 (file)
--- a/src/Tools/ctfInfo/ctfEnvelopFunction/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/ctfEnvelopFunction/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfEnvelopFunction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ ctfEnvelopFunction.o: ctfEnvelopFunction.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -50,24 +52,25 @@ ctfEnvelopFunction.o: ctfEnvelopFunction.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfEnvelopFunction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,26 +81,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfEnvelopFunction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/ctfFunction/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/ctfFunction/src/X86LINUX64/.Depend
index 9dd28c6..86baf79 100644 (file)
--- a/src/Tools/ctfInfo/ctfFunction/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/ctfFunction/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfFunction.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 ctfFunction.o: ctfFunction.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,30 +51,32 @@ ctfFunction.o: ctfFunction.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfFunction.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -83,26 +87,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfFunction.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/ctfFunctionServer/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/ctfFunctionServer/src/X86LINUX64/.Depend
index 5f4014a..2438626 100644 (file)
--- a/src/Tools/ctfInfo/ctfFunctionServer/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/ctfFunctionServer/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfFunctionServer.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ ctfFunctionServer.o: ctfFunctionServer.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -50,24 +52,25 @@ ctfFunctionServer.o: ctfFunctionServer.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfFunctionServer.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,26 +81,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfFunctionServer.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/ctfInfoSet/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/ctfInfoSet/src/X86LINUX64/.Depend
index 961f62d..c1546b5 100644 (file)
--- a/src/Tools/ctfInfo/ctfInfoSet/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/ctfInfoSet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ctfInfoSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 ctfInfoSet.o: ctfInfoSet.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,24 +49,25 @@ ctfInfoSet.o: ctfInfoSet.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ctfInfoSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -74,26 +77,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ctfInfoSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -101,14 +105,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/ctfMultiFunction/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/ctfMultiFunction/src/X86LINUX64/.Depend
index f669c79..44c7b6a 100644 (file)
--- a/src/Tools/ctfInfo/ctfMultiFunction/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/ctfMultiFunction/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfMultiFunction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ ctfMultiFunction.o: ctfMultiFunction.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -51,24 +53,25 @@ ctfMultiFunction.o: ctfMultiFunction.c /usr/include/stdio.h \
  ../inc/../inc/ctfMultiFunction.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,26 +82,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfMultiFunction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -106,14 +110,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/ctfWeightMapCreation/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/ctfWeightMapCreation/src/X86LINUX64/.Depend
index c590789..7caedd8 100644 (file)
--- a/src/Tools/ctfInfo/ctfWeightMapCreation/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/ctfWeightMapCreation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfWeightMapCreation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ ctfWeightMapCreation.o: ctfWeightMapCreation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -51,29 +53,31 @@ ctfWeightMapCreation.o: ctfWeightMapCreation.c /usr/include/stdio.h \
  ../inc/../inc/ctfWeightMapCreation.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -84,26 +88,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfWeightMapCreation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/ctfZeroPoint/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/ctfZeroPoint/src/X86LINUX64/.Depend
index aa42655..f5c72a6 100644 (file)
--- a/src/Tools/ctfInfo/ctfZeroPoint/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/ctfZeroPoint/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfZeroPoint.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ ctfZeroPoint.o: ctfZeroPoint.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -50,24 +52,25 @@ ctfZeroPoint.o: ctfZeroPoint.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfZeroPoint.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h ../inc/ctfZeroPoint.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,26 +81,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ctfZeroPoint.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/X86LINUX64/.Depend
index 9f8dbb8..d9cd465 100644 (file)
--- a/src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/defocusDeterminationFromThonRing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ defocusDeterminationFromThonRing.o: defocusDeterminationFromThonRing.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -50,30 +52,32 @@ defocusDeterminationFromThonRing.o: defocusDeterminationFromThonRing.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/defocusDeterminationFromThonRing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lllExtractdYEstimate.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -84,26 +88,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/defocusDeterminationFromThonRing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/electronWaveLength/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/electronWaveLength/src/X86LINUX64/.Depend
index e3981c0..0667e6b 100644 (file)
--- a/src/Tools/ctfInfo/electronWaveLength/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/electronWaveLength/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/electronWaveLength.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ electronWaveLength.o: electronWaveLength.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -50,24 +52,25 @@ electronWaveLength.o: electronWaveLength.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/electronWaveLength.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,26 +81,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/electronWaveLength.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/molecularEnvelopeResampling/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/molecularEnvelopeResampling/src/X86LINUX64/.Depend
index e248d23..c3633d1 100644 (file)
--- a/src/Tools/ctfInfo/molecularEnvelopeResampling/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/molecularEnvelopeResampling/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/molecularEnvelopeResampling.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/molecularEnvelopeResampling.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ molecularEnvelopeResampling.o: molecularEnvelopeResampling.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,24 +83,25 @@ molecularEnvelopeResampling.o: molecularEnvelopeResampling.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/molecularEnvelopeResampling.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ctfInfo/tiltInfoDetermine/src/X86LINUX64/.Depend b/src/Tools/ctfInfo/tiltInfoDetermine/src/X86LINUX64/.Depend
index 8414584..57115f9 100644 (file)
--- a/src/Tools/ctfInfo/tiltInfoDetermine/src/X86LINUX64/.Depend
+++ b/src/Tools/ctfInfo/tiltInfoDetermine/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/tiltInfoDetermine.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/tiltInfoDetermine.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ tiltInfoDetermine.o: tiltInfoDetermine.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ tiltInfoDetermine.o: tiltInfoDetermine.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/tiltInfoDetermine.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/nr2.h \
  /home/people/tacyas/Eos/include/Memory.h \
@@ -94,6 +97,7 @@ tiltInfoDetermine.o: tiltInfoDetermine.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/lmrcImageROI2D.h \
@@ -104,14 +108,15 @@ tiltInfoDetermine.o: tiltInfoDetermine.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -119,14 +124,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/array2mrc/src/X86LINUX64/.Depend b/src/Tools/filter/array2mrc/src/X86LINUX64/.Depend
index e786de3..99532c9 100644 (file)
--- a/src/Tools/filter/array2mrc/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/array2mrc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/array2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 array2mrc.o: array2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,32 +49,33 @@ array2mrc.o: array2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/array2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/larray2mrc.h \
  /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/larray2mrc.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -82,26 +85,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/array2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/bin2mrc/src/X86LINUX64/.Depend b/src/Tools/filter/bin2mrc/src/X86LINUX64/.Depend
index f2c6512..681beda 100644 (file)
--- a/src/Tools/filter/bin2mrc/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/bin2mrc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/bin2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 bin2mrc.o: bin2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,29 +49,31 @@ bin2mrc.o: bin2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/bin2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,26 +83,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/bin2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -106,14 +111,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/dos2unix/src/X86LINUX64/.Depend b/src/Tools/filter/dos2unix/src/X86LINUX64/.Depend
index 2e1265a..c9bcafb 100644 (file)
--- a/src/Tools/filter/dos2unix/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/dos2unix/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/dos2unix.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 dos2unix.o: dos2unix.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,23 +49,24 @@ dos2unix.o: dos2unix.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/dos2unix.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -73,26 +76,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/dos2unix.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -100,14 +104,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/emData2mrc/src/X86LINUX64/.Depend b/src/Tools/filter/emData2mrc/src/X86LINUX64/.Depend
index 7ebd0b2..536a32f 100644 (file)
--- a/src/Tools/filter/emData2mrc/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/emData2mrc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/emData2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 emData2mrc.o: emData2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,29 +49,31 @@ emData2mrc.o: emData2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/emData2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/emData.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,26 +83,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/emData2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -106,14 +111,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/imodst2mrc/src/X86LINUX64/.Depend b/src/Tools/filter/imodst2mrc/src/X86LINUX64/.Depend
index b9f33e1..6fefa07 100644 (file)
--- a/src/Tools/filter/imodst2mrc/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/imodst2mrc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/imodst2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 imodst2mrc.o: imodst2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,28 +49,30 @@ imodst2mrc.o: imodst2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/imodst2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,26 +82,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/imodst2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +110,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/ip2mrc/src/X86LINUX64/.Depend b/src/Tools/filter/ip2mrc/src/X86LINUX64/.Depend
index dd2fd49..78ab831 100644 (file)
--- a/src/Tools/filter/ip2mrc/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/ip2mrc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ip2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ip2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 ip2mrc.o: ip2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,29 +79,31 @@ ip2mrc.o: ip2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ip2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -106,14 +111,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/moi2mrc/src/X86LINUX64/.Depend b/src/Tools/filter/moi2mrc/src/X86LINUX64/.Depend
index 2441a7f..e83f7f1 100644 (file)
--- a/src/Tools/filter/moi2mrc/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/moi2mrc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/moi2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/moi2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 moi2mrc.o: moi2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,12 +79,12 @@ moi2mrc.o: moi2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/moi2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/String.h \
@@ -89,18 +92,20 @@ moi2mrc.o: moi2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/mrc2fld/src/X86LINUX64/.Depend b/src/Tools/filter/mrc2fld/src/X86LINUX64/.Depend
index 0100ec1..359cca6 100644 (file)
--- a/src/Tools/filter/mrc2fld/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/mrc2fld/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2fld.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,12 +49,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2fld.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -64,21 +66,22 @@ mrc2fld.o: mrc2fld.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /usr/include/stdio.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -88,20 +91,22 @@ mrc2fld.o: mrc2fld.c /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/avsFile.h \
  /home/people/tacyas/Eos/include/lmrcImageModeChange.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/mrc2gif/src/X86LINUX64/.Depend b/src/Tools/filter/mrc2gif/src/X86LINUX64/.Depend
index 1290f5a..1e540a4 100644 (file)
--- a/src/Tools/filter/mrc2gif/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/mrc2gif/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2gif.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2gif.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrc2gif.o: mrc2gif.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -77,29 +80,31 @@ mrc2gif.o: mrc2gif.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2gif.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/gifFile.h \
  /home/people/tacyas/Eos/include/gif_lib.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -107,14 +112,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/mrc2lattice/src/X86LINUX64/.Depend b/src/Tools/filter/mrc2lattice/src/X86LINUX64/.Depend
index c8d42a7..051f91c 100644 (file)
--- a/src/Tools/filter/mrc2lattice/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/mrc2lattice/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrc2lattice.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrc2lattice.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrc2lattice.o: mrc2lattice.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,29 +82,31 @@ mrc2lattice.o: mrc2lattice.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrc2lattice.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/mrc2pov/src/X86LINUX64/.Depend b/src/Tools/filter/mrc2pov/src/X86LINUX64/.Depend
index 1c402ac..b8fba88 100644 (file)
--- a/src/Tools/filter/mrc2pov/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/mrc2pov/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2pov.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2pov.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrc2pov.o: mrc2pov.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,30 +79,32 @@ mrc2pov.o: mrc2pov.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2pov.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -107,14 +112,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/mrc2tiff/src/X86LINUX64/.Depend b/src/Tools/filter/mrc2tiff/src/X86LINUX64/.Depend
index 4913d2c..daf0af0 100644 (file)
--- a/src/Tools/filter/mrc2tiff/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/mrc2tiff/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2tiff.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2tiff.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrc2tiff.o: mrc2tiff.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,30 +79,32 @@ mrc2tiff.o: mrc2tiff.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2tiff.h \
  /home/people/tacyas/Eos/include/Memory.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/tiffio.h \
  /home/people/tacyas/Eos/include/tiff.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -107,14 +112,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/mrc2viff/src/X86LINUX64/.Depend b/src/Tools/filter/mrc2viff/src/X86LINUX64/.Depend
index a0d3ad2..ced1a59 100644 (file)
--- a/src/Tools/filter/mrc2viff/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/mrc2viff/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2viff.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2viff.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -74,14 +77,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/pdb2ucd/src/X86LINUX64/.Depend b/src/Tools/filter/pdb2ucd/src/X86LINUX64/.Depend
index 55cf7ea..dfce2ab 100644 (file)
--- a/src/Tools/filter/pdb2ucd/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/pdb2ucd/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdb2ucd.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdb2ucd.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdb2ucd.o: pdb2ucd.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,15 +79,16 @@ pdb2ucd.o: pdb2ucd.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdb2ucd.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -92,14 +96,15 @@ pdb2ucd.o: pdb2ucd.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -107,14 +112,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/test2/src/X86LINUX64/.Depend b/src/Tools/filter/test2/src/X86LINUX64/.Depend
index dfd1dda..03ce07b 100644 (file)
--- a/src/Tools/filter/test2/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/test2/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/test.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/test.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -74,14 +77,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/tgaInfo/src/X86LINUX64/.Depend b/src/Tools/filter/tgaInfo/src/X86LINUX64/.Depend
index d6df976..118d3fb 100644 (file)
--- a/src/Tools/filter/tgaInfo/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/tgaInfo/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/tgaInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/tgaInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 tgaInfo.o: tgaInfo.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,24 +79,25 @@ tgaInfo.o: tgaInfo.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/tgaInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/tgaFile.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -101,14 +105,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/filter/tiff2mrc/src/X86LINUX64/.Depend b/src/Tools/filter/tiff2mrc/src/X86LINUX64/.Depend
index 8a82b08..dd6e42f 100644 (file)
--- a/src/Tools/filter/tiff2mrc/src/X86LINUX64/.Depend
+++ b/src/Tools/filter/tiff2mrc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/tiff2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/tiff2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 tiff2mrc.o: tiff2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,12 +79,12 @@ tiff2mrc.o: tiff2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/tiff2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/Memory.h \
@@ -90,20 +93,22 @@ tiff2mrc.o: tiff2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/tiff.h \
  /home/people/tacyas/Eos/include/tiffio.h \
  /home/people/tacyas/Eos/include/tiff.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/hf2000/hf2000Init/src/X86LINUX64/.Depend b/src/Tools/hf2000/hf2000Init/src/X86LINUX64/.Depend
index 251e0ac..854ad35 100644 (file)
--- a/src/Tools/hf2000/hf2000Init/src/X86LINUX64/.Depend
+++ b/src/Tools/hf2000/hf2000Init/src/X86LINUX64/.Depend
@@ -4,11 +4,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,7 +20,7 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/hf2000Init.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -30,29 +31,32 @@ hf2000Init.o: hf2000Init.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
  /usr/include/unistd.h /usr/include/bits/posix_opt.h \
- /usr/include/bits/confname.h /usr/include/getopt.h /usr/include/string.h \
- /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/environments.h /usr/include/bits/confname.h \
+ /usr/include/getopt.h /usr/include/string.h /usr/include/xlocale.h \
+ /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/config.h ../inc/../inc/hf2000Init.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/Socket.h /usr/include/sys/socket.h \
  /usr/include/sys/uio.h /usr/include/bits/uio.h \
  /usr/include/bits/socket.h /usr/include/bits/sockaddr.h \
- /usr/include/asm/socket.h /usr/include/asm/sockios.h \
+ /usr/include/asm/socket.h /usr/include/asm-generic/socket.h \
+ /usr/include/asm/sockios.h /usr/include/asm-generic/sockios.h \
  /usr/include/netinet/in.h /usr/include/stdint.h \
  /usr/include/bits/wchar.h /usr/include/bits/in.h /usr/include/netdb.h \
  /usr/include/rpc/netdb.h /usr/include/bits/netdb.h \
@@ -74,11 +78,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -89,7 +94,7 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/hf2000Init.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -100,11 +105,12 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -115,11 +121,12 @@ util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/hf2000/hf2000LenzCurrent/src/X86LINUX64/.Depend b/src/Tools/hf2000/hf2000LenzCurrent/src/X86LINUX64/.Depend
index 2b3f78f..7aa8a4a 100644 (file)
--- a/src/Tools/hf2000/hf2000LenzCurrent/src/X86LINUX64/.Depend
+++ b/src/Tools/hf2000/hf2000LenzCurrent/src/X86LINUX64/.Depend
@@ -4,11 +4,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -20,7 +21,7 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  ../inc/../inc/hf2000LenzCurrent.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -32,11 +33,12 @@ hf2000LenzCurrent.o: hf2000LenzCurrent.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,7 +49,7 @@ hf2000LenzCurrent.o: hf2000LenzCurrent.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tcl.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tclDecls.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tclPlatDecls.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tk.h \
@@ -69,11 +71,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -85,7 +88,7 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  ../inc/../inc/hf2000LenzCurrent.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -96,11 +99,12 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,11 +115,12 @@ util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/hf2000/hf2000SpecimenPosition/src/X86LINUX64/.Depend b/src/Tools/hf2000/hf2000SpecimenPosition/src/X86LINUX64/.Depend
index a617e6f..7dc98f2 100644 (file)
--- a/src/Tools/hf2000/hf2000SpecimenPosition/src/X86LINUX64/.Depend
+++ b/src/Tools/hf2000/hf2000SpecimenPosition/src/X86LINUX64/.Depend
@@ -4,11 +4,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -20,7 +21,7 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  ../inc/../inc/hf2000SpecimenPosition.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -32,11 +33,12 @@ hf2000SpecimenPosition.o: hf2000SpecimenPosition.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -48,7 +50,7 @@ hf2000SpecimenPosition.o: hf2000SpecimenPosition.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tk.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tcl.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tclDecls.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tclPlatDecls.h \
  /usr/include/X11/Xlib.h /usr/include/X11/X.h \
@@ -74,11 +76,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -90,7 +93,7 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  ../inc/../inc/hf2000SpecimenPosition.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -101,11 +104,12 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -116,11 +120,12 @@ util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/khorosTool/khorosFilterGenerate/src/X86LINUX64/.Depend b/src/Tools/khorosTool/khorosFilterGenerate/src/X86LINUX64/.Depend
index 9d51c1c..a092a60 100644 (file)
--- a/src/Tools/khorosTool/khorosFilterGenerate/src/X86LINUX64/.Depend
+++ b/src/Tools/khorosTool/khorosFilterGenerate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/khorosFilterGenerate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/khorosFilterGenerate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -76,14 +79,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/largeIP/largeIPInfo/src/X86LINUX64/.Depend b/src/Tools/largeIP/largeIPInfo/src/X86LINUX64/.Depend
index 90852f9..f0dca57 100644 (file)
--- a/src/Tools/largeIP/largeIPInfo/src/X86LINUX64/.Depend
+++ b/src/Tools/largeIP/largeIPInfo/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/largeIPInfo.h /home/people/tacyas/Eos/include/largeIP.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/largeIPInfo.h /home/people/tacyas/Eos/include/largeIP.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 largeIPInfo.o: largeIPInfo.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,14 +84,15 @@ largeIPInfo.o: largeIPInfo.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -96,14 +100,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataAverage/src/X86LINUX64/.Depend b/src/Tools/llData/llDataAverage/src/X86LINUX64/.Depend
index d569efd..511f619 100644 (file)
--- a/src/Tools/llData/llDataAverage/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataAverage/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataAverage.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataAverage.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataAverage.o: llDataAverage.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ llDataAverage.o: llDataAverage.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataAverage.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -95,14 +98,15 @@ llDataAverage.o: llDataAverage.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataAxisSearch/src/X86LINUX64/.Depend b/src/Tools/llData/llDataAxisSearch/src/X86LINUX64/.Depend
index b1f5875..0a80096 100644 (file)
--- a/src/Tools/llData/llDataAxisSearch/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataAxisSearch/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataAxisSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataAxisSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataAxisSearch.o: llDataAxisSearch.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ llDataAxisSearch.o: llDataAxisSearch.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataAxisSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/lllDataAxisSearch.h \
@@ -96,14 +99,15 @@ llDataAxisSearch.o: llDataAxisSearch.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataCTFCompensate/src/X86LINUX64/.Depend b/src/Tools/llData/llDataCTFCompensate/src/X86LINUX64/.Depend
index d10c9fd..01c93d0 100644 (file)
--- a/src/Tools/llData/llDataCTFCompensate/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataCTFCompensate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataCTFCompensate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataCTFCompensate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataCTFCompensate.o: llDataCTFCompensate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -83,12 +86,12 @@ llDataCTFCompensate.o: llDataCTFCompensate.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/lllDataCTFCompensate.h \
  /home/people/tacyas/Eos/include/llData.h \
@@ -98,14 +101,15 @@ llDataCTFCompensate.o: llDataCTFCompensate.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataCompare/src/X86LINUX64/.Depend b/src/Tools/llData/llDataCompare/src/X86LINUX64/.Depend
index a3683d2..9f2a9bb 100644 (file)
--- a/src/Tools/llData/llDataCompare/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataCompare/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataCompare.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataCompare.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataCompare.o: llDataCompare.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ llDataCompare.o: llDataCompare.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataCompare.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -95,14 +98,15 @@ llDataCompare.o: llDataCompare.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataContributionCalcDifferentN/src/X86LINUX64/.Depend b/src/Tools/llData/llDataContributionCalcDifferentN/src/X86LINUX64/.Depend
index 4b1e6ab..e4beb03 100644 (file)
--- a/src/Tools/llData/llDataContributionCalcDifferentN/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataContributionCalcDifferentN/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataContributionCalcDifferentN.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataContributionCalcDifferentN.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataContributionCalcDifferentN.o: llDataContributionCalcDifferentN.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ llDataContributionCalcDifferentN.o: llDataContributionCalcDifferentN.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataContributionCalcDifferentN.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/lllDataContributionCalcDifferentN.h \
@@ -94,14 +97,15 @@ llDataContributionCalcDifferentN.o: llDataContributionCalcDifferentN.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataDump/src/X86LINUX64/.Depend b/src/Tools/llData/llDataDump/src/X86LINUX64/.Depend
index 0e763d6..a8dc9dd 100644 (file)
--- a/src/Tools/llData/llDataDump/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataDump/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/llDataDump.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/llDataDump.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 llDataDump.o: llDataDump.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,25 +79,26 @@ llDataDump.o: llDataDump.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/llDataDump.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -102,14 +106,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataEquatorAdd/src/X86LINUX64/.Depend b/src/Tools/llData/llDataEquatorAdd/src/X86LINUX64/.Depend
index 6ff18a2..a881049 100644 (file)
--- a/src/Tools/llData/llDataEquatorAdd/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataEquatorAdd/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataEquatorAdd.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataEquatorAdd.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataEquatorAdd.o: llDataEquatorAdd.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ llDataEquatorAdd.o: llDataEquatorAdd.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataEquatorAdd.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/lllDataEquatorAdd.h \
@@ -94,14 +97,15 @@ llDataEquatorAdd.o: llDataEquatorAdd.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataExtract/src/X86LINUX64/.Depend b/src/Tools/llData/llDataExtract/src/X86LINUX64/.Depend
index 8a891b2..843b887 100644 (file)
--- a/src/Tools/llData/llDataExtract/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataExtract/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataExtract.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataExtract.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataExtract.o: llDataExtract.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ llDataExtract.o: llDataExtract.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataExtract.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/lllDataExtract.h \
@@ -94,14 +97,15 @@ llDataExtract.o: llDataExtract.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataFit/src/X86LINUX64/.Depend b/src/Tools/llData/llDataFit/src/X86LINUX64/.Depend
index 7fc4e9f..018d94c 100644 (file)
--- a/src/Tools/llData/llDataFit/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataFit/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/llDataFit.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/llDataFit.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 llDataFit.o: llDataFit.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,14 +81,15 @@ llDataFit.o: llDataFit.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -93,14 +97,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataFitServer/src/X86LINUX64/.Depend b/src/Tools/llData/llDataFitServer/src/X86LINUX64/.Depend
index 47a6dd7..1c6f56b 100644 (file)
--- a/src/Tools/llData/llDataFitServer/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataFitServer/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataFitServer.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataFitServer.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataFitServer.o: llDataFitServer.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ llDataFitServer.o: llDataFitServer.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataFitServer.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/lllDataFit.h \
@@ -93,14 +96,15 @@ llDataFitServer.o: llDataFitServer.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +112,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataInfo/src/X86LINUX64/.Depend b/src/Tools/llData/llDataInfo/src/X86LINUX64/.Depend
index 0cf89e5..f0026b2 100644 (file)
--- a/src/Tools/llData/llDataInfo/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataInfo/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/llDataInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/llDataInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 llDataInfo.o: llDataInfo.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,14 +83,15 @@ llDataInfo.o: llDataInfo.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -95,14 +99,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \

diff --git a/src/Tools/llData/llDataLowPassFiltering/src/X86LINUX64/.Depend b/src/Tools/llData/llDataLowPassFiltering/src/X86LINUX64/.Depend
index 91a80d6..0579c92 100644 (file)
--- a/src/Tools/llData/llDataLowPassFiltering/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataLowPassFiltering/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataLowPassFiltering.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataLowPassFiltering.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataLowPassFiltering.o: llDataLowPassFiltering.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ llDataLowPassFiltering.o: llDataLowPassFiltering.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataLowPassFiltering.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/lllDataLowPassFiltering.h \
@@ -94,14 +97,15 @@ test.o: test.c
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataMultiCTFCompensation/src/X86LINUX64/.Depend b/src/Tools/llData/llDataMultiCTFCompensation/src/X86LINUX64/.Depend
index 305f673..fb1434f 100644 (file)
--- a/src/Tools/llData/llDataMultiCTFCompensation/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataMultiCTFCompensation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataMultiCTFCompensation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataMultiCTFCompensation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataMultiCTFCompensation.o: llDataMultiCTFCompensation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,12 +82,12 @@ llDataMultiCTFCompensation.o: llDataMultiCTFCompensation.c \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h ../inc/config.h \
  ../inc/../inc/llDataMultiCTFCompensation.h \
@@ -100,14 +103,15 @@ llDataMultiCTFCompensation.o: llDataMultiCTFCompensation.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -115,14 +119,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataNEstimation/src/X86LINUX64/.Depend b/src/Tools/llData/llDataNEstimation/src/X86LINUX64/.Depend
index d2641ab..80a2038 100644 (file)
--- a/src/Tools/llData/llDataNEstimation/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataNEstimation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataNEstimation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataNEstimation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataNEstimation.o: llDataNEstimation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,28 +84,30 @@ llDataNEstimation.o: llDataNEstimation.c /usr/include/stdio.h \
  ../inc/../inc/llDataNEstimation.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/llData.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataNormalization/src/X86LINUX64/.Depend b/src/Tools/llData/llDataNormalization/src/X86LINUX64/.Depend
index ee0597b..3b2e8d4 100644 (file)
--- a/src/Tools/llData/llDataNormalization/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataNormalization/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataNormalization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataNormalization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataNormalization.o: llDataNormalization.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ llDataNormalization.o: llDataNormalization.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataNormalization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/lllDataDifferenceCalc.h \
@@ -94,14 +97,15 @@ llDataNormalization.o: llDataNormalization.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataPrint/src/X86LINUX64/.Depend b/src/Tools/llData/llDataPrint/src/X86LINUX64/.Depend
index ec46060..d1ec75e 100644 (file)
--- a/src/Tools/llData/llDataPrint/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataPrint/src/X86LINUX64/.Depend
@@ -4,11 +4,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -20,7 +21,7 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  ../inc/../inc/llDataPrint.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -31,11 +32,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,7 +49,7 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  ../inc/../inc/llDataPrint.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -58,11 +60,12 @@ llDataPrint.o: llDataPrint.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -75,7 +78,7 @@ llDataPrint.o: llDataPrint.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tk.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tcl.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tclDecls.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tclPlatDecls.h \
  /usr/include/X11/Xlib.h /usr/include/X11/X.h \
@@ -97,11 +100,12 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,11 +116,12 @@ util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataRescaling/src/X86LINUX64/.Depend b/src/Tools/llData/llDataRescaling/src/X86LINUX64/.Depend
index 0836288..22e3eee 100644 (file)
--- a/src/Tools/llData/llDataRescaling/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataRescaling/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataRescaling.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataRescaling.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataRescaling.o: llDataRescaling.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ llDataRescaling.o: llDataRescaling.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataRescaling.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/lllDataRescaling.h \
@@ -93,14 +96,15 @@ llDataRescaling.o: llDataRescaling.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +112,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataResolutionCheck/src/X86LINUX64/.Depend b/src/Tools/llData/llDataResolutionCheck/src/X86LINUX64/.Depend
index dd80655..b4fc3b0 100644 (file)
--- a/src/Tools/llData/llDataResolutionCheck/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataResolutionCheck/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataResolutionCheck.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataResolutionCheck.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataResolutionCheck.o: llDataResolutionCheck.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,26 +83,27 @@ llDataResolutionCheck.o: llDataResolutionCheck.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataResolutionCheck.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -107,14 +111,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataRotation/src/X86LINUX64/.Depend b/src/Tools/llData/llDataRotation/src/X86LINUX64/.Depend
index 31a53ed..2393efd 100644 (file)
--- a/src/Tools/llData/llDataRotation/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataRotation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataRotation.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataRotation.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataRotation.o: llDataRotation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -83,14 +86,15 @@ llDataRotation.o: llDataRotation.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -98,14 +102,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataSelectionEstimation/src/X86LINUX64/.Depend b/src/Tools/llData/llDataSelectionEstimation/src/X86LINUX64/.Depend
index 00adf6d..8a53183 100644 (file)
--- a/src/Tools/llData/llDataSelectionEstimation/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataSelectionEstimation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataSelectionEstimation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataSelectionEstimation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataSelectionEstimation.o: llDataSelectionEstimation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,26 +83,27 @@ llDataSelectionEstimation.o: llDataSelectionEstimation.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataSelectionEstimation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -107,14 +111,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataSeparate/src/X86LINUX64/.Depend b/src/Tools/llData/llDataSeparate/src/X86LINUX64/.Depend
index a326851..1804028 100644 (file)
--- a/src/Tools/llData/llDataSeparate/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataSeparate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataSeparate.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataSeparate.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataSeparate.o: llDataSeparate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ llDataSeparate.o: llDataSeparate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataSeparate.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -93,6 +96,7 @@ llDataSeparate.o: llDataSeparate.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/lllExtract.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -104,14 +108,15 @@ llDataSeparate.o: llDataSeparate.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -119,14 +124,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDataWeightSet/src/X86LINUX64/.Depend b/src/Tools/llData/llDataWeightSet/src/X86LINUX64/.Depend
index 2b765a6..1367317 100644 (file)
--- a/src/Tools/llData/llDataWeightSet/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDataWeightSet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataWeightSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDataWeightSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDataWeightSet.o: llDataWeightSet.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -83,14 +86,15 @@ llDataWeightSet.o: llDataWeightSet.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -98,14 +102,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/llData/llDatarMaxLimit/src/X86LINUX64/.Depend b/src/Tools/llData/llDatarMaxLimit/src/X86LINUX64/.Depend
index 236a2f0..2581453 100644 (file)
--- a/src/Tools/llData/llDatarMaxLimit/src/X86LINUX64/.Depend
+++ b/src/Tools/llData/llDatarMaxLimit/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDatarMaxLimit.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llDatarMaxLimit.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llDatarMaxLimit.o: llDatarMaxLimit.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -83,24 +86,25 @@ llDatarMaxLimit.o: llDatarMaxLimit.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/lllDatarMaxLimit.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/genUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +112,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/ltlgData/ltlgDataInfo/src/X86LINUX64/.Depend b/src/Tools/ltlgData/ltlgDataInfo/src/X86LINUX64/.Depend
index 8a820b2..9368cdd 100644 (file)
--- a/src/Tools/ltlgData/ltlgDataInfo/src/X86LINUX64/.Depend
+++ b/src/Tools/ltlgData/ltlgDataInfo/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ltlgDataInfo.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ltlgDataInfo.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ ltlgDataInfo.o: ltlgDataInfo.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -82,14 +85,15 @@ ltlgDataInfo.o: ltlgDataInfo.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -97,14 +101,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/matrix3D/matrix3DEulerAngleTransform/src/X86LINUX64/.Depend b/src/Tools/matrix3D/matrix3DEulerAngleTransform/src/X86LINUX64/.Depend
index 4790d27..6b3444d 100644 (file)
--- a/src/Tools/matrix3D/matrix3DEulerAngleTransform/src/X86LINUX64/.Depend
+++ b/src/Tools/matrix3D/matrix3DEulerAngleTransform/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/matrix3DEulerAngleTransform.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/matrix3DEulerAngleTransform.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ matrix3DEulerAngleTransform.o: matrix3DEulerAngleTransform.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,27 +83,29 @@ matrix3DEulerAngleTransform.o: matrix3DEulerAngleTransform.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/matrix3DEulerAngleTransform.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/matrix3D/matrix3DFromEulerAngle/src/X86LINUX64/.Depend b/src/Tools/matrix3D/matrix3DFromEulerAngle/src/X86LINUX64/.Depend
index 9ca20e0..856b882 100644 (file)
--- a/src/Tools/matrix3D/matrix3DFromEulerAngle/src/X86LINUX64/.Depend
+++ b/src/Tools/matrix3D/matrix3DFromEulerAngle/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/matrix3DFromEulerAngle.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/matrix3DFromEulerAngle.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ matrix3DFromEulerAngle.o: matrix3DFromEulerAngle.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,26 +83,28 @@ matrix3DFromEulerAngle.o: matrix3DFromEulerAngle.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/matrix3DFromEulerAngle.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -107,14 +112,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/matrix3D/matrix3DInverse/src/X86LINUX64/.Depend b/src/Tools/matrix3D/matrix3DInverse/src/X86LINUX64/.Depend
index fd0a0c9..8293e19 100644 (file)
--- a/src/Tools/matrix3D/matrix3DInverse/src/X86LINUX64/.Depend
+++ b/src/Tools/matrix3D/matrix3DInverse/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/matrix3DInverse.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/matrix3DInverse.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ matrix3DInverse.o: matrix3DInverse.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,27 +83,29 @@ matrix3DInverse.o: matrix3DInverse.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/matrix3DInverse.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/matrix3D/matrix3DToEulerAngle/src/X86LINUX64/.Depend b/src/Tools/matrix3D/matrix3DToEulerAngle/src/X86LINUX64/.Depend
index 6b19574..75733ae 100644 (file)
--- a/src/Tools/matrix3D/matrix3DToEulerAngle/src/X86LINUX64/.Depend
+++ b/src/Tools/matrix3D/matrix3DToEulerAngle/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/matrix3DToEulerAngle.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/matrix3DToEulerAngle.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ matrix3DToEulerAngle.o: matrix3DToEulerAngle.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -77,28 +80,30 @@ matrix3DToEulerAngle.o: matrix3DToEulerAngle.c /usr/include/stdio.h \
  /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/matrix3DToEulerAngle.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h ../inc/config.h \
- ../inc/../inc/matrix3DToEulerAngle.h \
- /home/people/tacyas/Eos/include/genUtil.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -106,14 +111,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/fft2d/src/X86LINUX64/.Depend b/src/Tools/mrcImage/fft2d/src/X86LINUX64/.Depend
index 95742d7..271e672 100644 (file)
--- a/src/Tools/mrcImage/fft2d/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/fft2d/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/fft2d.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 fft2d.o: fft2d.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -48,26 +50,28 @@ fft2d.o: fft2d.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/fft2d.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -77,26 +81,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/fft2d.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -104,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrc2dsn6/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrc2dsn6/src/X86LINUX64/.Depend
index 3af836e..e2ed4e7 100644 (file)
--- a/src/Tools/mrcImage/mrc2dsn6/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrc2dsn6/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2dsn6.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2dsn6.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrc2dsn6.o: mrc2dsn6.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,30 +79,32 @@ mrc2dsn6.o: mrc2dsn6.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/config.h ../inc/../inc/mrc2dsn6.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/dsn6File.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -107,14 +112,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrc2map/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrc2map/src/X86LINUX64/.Depend
index dc1cad6..54889a8 100644 (file)
--- a/src/Tools/mrcImage/mrc2map/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrc2map/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2map.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2map.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrc2map.o: mrc2map.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,29 +79,31 @@ mrc2map.o: mrc2map.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/config.h ../inc/../inc/mrc2map.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -106,14 +111,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrc3DExtractZ/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrc3DExtractZ/src/X86LINUX64/.Depend
index 44f3bc1..d31fa25 100644 (file)
--- a/src/Tools/mrcImage/mrc3DExtractZ/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrc3DExtractZ/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrc3DExtractZ.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrc3DExtractZ.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrc3DExtractZ.o: mrc3DExtractZ.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,26 +83,28 @@ mrc3DExtractZ.o: mrc3DExtractZ.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrc3DExtractZ.h /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -107,14 +112,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFETnormalizeBySD/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFETnormalizeBySD/src/X86LINUX64/.Depend
index bdbc35d..a8fb6a8 100644 (file)
--- a/src/Tools/mrcImage/mrcFETnormalizeBySD/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFETnormalizeBySD/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFETnormalizeBySD.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFETnormalizeBySD.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFETnormalizeBySD.o: mrcFETnormalizeBySD.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcFETnormalizeBySD.o: mrcFETnormalizeBySD.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFETnormalizeBySD.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcFETnormalizeBySD.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86LINUX64/.Depend
index ca80885..44e3b1c 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTBandPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTBandPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTBandPassFilter.o: mrcFFTBandPassFilter.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcFFTBandPassFilter.o: mrcFFTBandPassFilter.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTBandPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTCTFCompensation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTCTFCompensation/src/X86LINUX64/.Depend
index b23df83..af1da16 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTCTFCompensation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTCTFCompensation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTCTFCompensation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTCTFCompensation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTCTFCompensation.o: mrcFFTCTFCompensation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcFFTCTFCompensation.o: mrcFFTCTFCompensation.c /usr/include/stdio.h \
  ../inc/config.h ../inc/../inc/mrcFFTCTFCompensation.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/String.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTDigitize/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTDigitize/src/X86LINUX64/.Depend
index a7ea9d3..4c261d4 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTDigitize/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTDigitize/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTDigitize.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTDigitize.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTDigitize.o: mrcFFTDigitize.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcFFTDigitize.o: mrcFFTDigitize.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTDigitize.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTExpression/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTExpression/src/X86LINUX64/.Depend
index 0b90141..2476809 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTExpression/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTExpression/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTExpression.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTExpression.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTExpression.o: mrcFFTExpression.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcFFTExpression.o: mrcFFTExpression.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTExpression.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcFFTExpression.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTFibreDiagram/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTFibreDiagram/src/X86LINUX64/.Depend
index 34dfa33..05a5aa0 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTFibreDiagram/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTFibreDiagram/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTFibreDiagram.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTFibreDiagram.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTFibreDiagram.o: mrcFFTFibreDiagram.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcFFTFibreDiagram.o: mrcFFTFibreDiagram.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTFibreDiagram.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTFiltering/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTFiltering/src/X86LINUX64/.Depend
index d9043f9..08945e2 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTFiltering/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTFiltering/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTFiltering.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTFiltering.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTFiltering.o: mrcFFTFiltering.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,29 +82,31 @@ mrcFFTFiltering.o: mrcFFTFiltering.c /usr/include/stdio.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/config.h ../inc/../inc/mrcFFTFiltering.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Vector.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTIQEstimation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTIQEstimation/src/X86LINUX64/.Depend
index 95b04ea..b29937b 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTIQEstimation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTIQEstimation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTIQEstimation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTIQEstimation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTIQEstimation.o: mrcFFTIQEstimation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ mrcFFTIQEstimation.o: mrcFFTIQEstimation.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTIQEstimation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
@@ -93,18 +96,20 @@ mrcFFTIQEstimation.o: mrcFFTIQEstimation.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTInfo/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTInfo/src/X86LINUX64/.Depend
index 86b87a6..001484c 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTInfo/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTInfo/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrcFFTInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrcFFTInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrcFFTInfo.o: mrcFFTInfo.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,31 +79,33 @@ mrcFFTInfo.o: mrcFFTInfo.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/config.h ../inc/../inc/mrcFFTInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/lmrcFFTInfo.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTLayerLineCheck/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTLayerLineCheck/src/X86LINUX64/.Depend
index d011a9d..f7762c2 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTLayerLineCheck/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTLayerLineCheck/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTLayerLineCheck.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTLayerLineCheck.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTLayerLineCheck.o: mrcFFTLayerLineCheck.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcFFTLayerLineCheck.o: mrcFFTLayerLineCheck.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTLayerLineCheck.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTMedianFilter/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTMedianFilter/src/X86LINUX64/.Depend
index dc1ff9d..68b2e12 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTMedianFilter/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTMedianFilter/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTMedianFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTMedianFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTMedianFilter.o: mrcFFTMedianFilter.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcFFTMedianFilter.o: mrcFFTMedianFilter.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTMedianFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTProjection/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTProjection/src/X86LINUX64/.Depend
index 0c4d87e..f99e0d2 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTProjection/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTProjection/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTProjection.o: mrcFFTProjection.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,31 +83,33 @@ mrcFFTProjection.o: mrcFFTProjection.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/lmrcFFTInfo.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTResampling/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTResampling/src/X86LINUX64/.Depend
index ab7ce14..1519b19 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTResampling/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTResampling/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTResampling.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTResampling.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTResampling.o: mrcFFTResampling.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcFFTResampling.o: mrcFFTResampling.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTResampling.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTShellInfo/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTShellInfo/src/X86LINUX64/.Depend
index 01fdc5d..80d1e22 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTShellInfo/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTShellInfo/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTShellInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTShellInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTShellInfo.o: mrcFFTShellInfo.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcFFTShellInfo.o: mrcFFTShellInfo.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTShellInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcFFTInfo.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTSizeChange/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTSizeChange/src/X86LINUX64/.Depend
index 9b70748..e5c6256 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTSizeChange/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTSizeChange/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTSizeChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTSizeChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTSizeChange.o: mrcFFTSizeChange.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcFFTSizeChange.o: mrcFFTSizeChange.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTSizeChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTSpectrum/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTSpectrum/src/X86LINUX64/.Depend
index 3aefbe1..8d9095c 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTSpectrum/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTSpectrum/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTSpectrum.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTSpectrum.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTSpectrum.o: mrcFFTSpectrum.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,31 +83,33 @@ mrcFFTSpectrum.o: mrcFFTSpectrum.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTSpectrum.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcFFTInfo.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTXFiltering/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTXFiltering/src/X86LINUX64/.Depend
index b067b29..154c588 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTXFiltering/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTXFiltering/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTXFiltering.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTXFiltering.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTXFiltering.o: mrcFFTXFiltering.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcFFTXFiltering.o: mrcFFTXFiltering.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTXFiltering.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcFFTInfo.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFFTplainreduce/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFFTplainreduce/src/X86LINUX64/.Depend
index a1476ee..809b7e2 100644 (file)
--- a/src/Tools/mrcImage/mrcFFTplainreduce/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTplainreduce/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTplainreduce.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTplainreduce.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFFTplainreduce.o: mrcFFTplainreduce.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcFFTplainreduce.o: mrcFFTplainreduce.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFFTplainreduce.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcFTMeridianEquatorRedece/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcFTMeridianEquatorRedece/src/X86LINUX64/.Depend
index ced8eea..a7798f3 100644 (file)
--- a/src/Tools/mrcImage/mrcFTMeridianEquatorRedece/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcFTMeridianEquatorRedece/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFTMeridianEquatorRedece.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFTMeridianEquatorRedece.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcFTMeridianEquatorRedece.o: mrcFTMeridianEquatorRedece.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcFTMeridianEquatorRedece.o: mrcFTMeridianEquatorRedece.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcFTMeridianEquatorRedece.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/X86LINUX64/.Depend
index ec667cb..cf86a99 100644 (file)
--- a/src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage1DProjectionfrom2D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage1DProjectionfrom2D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImage1DProjectionfrom2D.o: mrcImage1DProjectionfrom2D.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImage1DProjectionfrom2D.o: mrcImage1DProjectionfrom2D.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage1DProjectionfrom2D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/X86LINUX64/.Depend
index fde1075..36c93de 100644 (file)
--- a/src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage1dAverageByCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage1dAverageByCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImage1dAverageByCorrelation.o: mrcImage1dAverageByCorrelation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImage1dAverageByCorrelation.o: mrcImage1dAverageByCorrelation.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage1dAverageByCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImage1dCutAverage/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImage1dCutAverage/src/X86LINUX64/.Depend
index 482b0e8..aa150d6 100644 (file)
--- a/src/Tools/mrcImage/mrcImage1dCutAverage/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImage1dCutAverage/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage1dCutAverage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage1dCutAverage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImage1dCutAverage.o: mrcImage1dCutAverage.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImage1dCutAverage.o: mrcImage1dCutAverage.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage1dCutAverage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/X86LINUX64/.Depend
index fa8fc5a..d6f0203 100644 (file)
--- a/src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage1dShiftAverageByAnnealing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage1dShiftAverageByAnnealing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImage1dShiftAverageByAnnealing.o: mrcImage1dShiftAverageByAnnealing.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,15 +84,16 @@ mrcImage1dShiftAverageByAnnealing.o: mrcImage1dShiftAverageByAnnealing.c \
  ../inc/../inc/mrcImage1dShiftAverageByAnnealing.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/mrcImagefuncmin.h \
  /home/people/tacyas/Eos/include/nr2.h \
@@ -98,14 +102,15 @@ mrcImage1dShiftAverageByAnnealing.o: mrcImage1dShiftAverageByAnnealing.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/X86LINUX64/.Depend
index df4e0d4..a440af9 100644 (file)
--- a/src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage1dShiftByCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage1dShiftByCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImage1dShiftByCorrelation.o: mrcImage1dShiftByCorrelation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImage1dShiftByCorrelation.o: mrcImage1dShiftByCorrelation.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage1dShiftByCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/nr2.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImage2DBackProjection/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImage2DBackProjection/src/X86LINUX64/.Depend
index cb750f4..e5498c8 100644 (file)
--- a/src/Tools/mrcImage/mrcImage2DBackProjection/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImage2DBackProjection/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage2DBackProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage2DBackProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImage2DBackProjection.o: mrcImage2DBackProjection.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImage2DBackProjection.o: mrcImage2DBackProjection.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage2DBackProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImage2DProjection/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImage2DProjection/src/X86LINUX64/.Depend
index 00f4860..3b60568 100644 (file)
--- a/src/Tools/mrcImage/mrcImage2DProjection/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImage2DProjection/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage2DProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage2DProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImage2DProjection.o: mrcImage2DProjection.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImage2DProjection.o: mrcImage2DProjection.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage2DProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImage2pdb/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImage2pdb/src/X86LINUX64/.Depend
index 7bf0492..b45bd65 100644 (file)
--- a/src/Tools/mrcImage/mrcImage2pdb/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImage2pdb/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage2pdb.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage2pdb.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImage2pdb.o: mrcImage2pdb.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImage2pdb.o: mrcImage2pdb.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage2pdb.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Random.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/X86LINUX64/.Depend
index 5e5c3ae..1417ee4 100644 (file)
--- a/src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DHighResoEmphasis.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DHighResoEmphasis.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImage3DHighResoEmphasis.o: mrcImage3DHighResoEmphasis.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImage3DHighResoEmphasis.o: mrcImage3DHighResoEmphasis.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DHighResoEmphasis.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImage3DPad/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImage3DPad/src/X86LINUX64/.Depend
index ba50745..a7a6172 100644 (file)
--- a/src/Tools/mrcImage/mrcImage3DPad/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImage3DPad/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DPad.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DPad.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImage3DPad.o: mrcImage3DPad.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImage3DPad.o: mrcImage3DPad.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DPad.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImage3DPad/src/X86LINUX64/mrcImage3DPad b/src/Tools/mrcImage/mrcImage3DPad/src/X86LINUX64/mrcImage3DPad
index e9e53c2..1cfd649 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImage3DPad/src/X86LINUX64/mrcImage3DPad and b/src/Tools/mrcImage/mrcImage3DPad/src/X86LINUX64/mrcImage3DPad differ

diff --git a/src/Tools/mrcImage/mrcImage3DPad2/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImage3DPad2/src/X86LINUX64/.Depend
index 2696de3..4a4224f 100644 (file)
--- a/src/Tools/mrcImage/mrcImage3DPad2/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImage3DPad2/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DPad2.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DPad2.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImage3DPad.o: mrcImage3DPad.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImage3DPad.o: mrcImage3DPad.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DPad2.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 mrcImage3DPad2.o: mrcImage3DPad2.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -113,28 +118,30 @@ mrcImage3DPad2.o: mrcImage3DPad2.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DPad2.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -142,14 +149,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImage3DSymmetryFind/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImage3DSymmetryFind/src/X86LINUX64/.Depend
index 8ece1b5..424ea91 100755 (executable)
--- a/src/Tools/mrcImage/mrcImage3DSymmetryFind/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImage3DSymmetryFind/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DSymmetryFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DSymmetryFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImage3DSymmetryFind.o: mrcImage3DSymmetryFind.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImage3DSymmetryFind.o: mrcImage3DSymmetryFind.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DSymmetryFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Matrix3D.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImage3DWindowing/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImage3DWindowing/src/X86LINUX64/.Depend
index 61f20ee..65bc2ee 100644 (file)
--- a/src/Tools/mrcImage/mrcImage3DWindowing/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImage3DWindowing/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DWindowing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DWindowing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImage3DWindowing.o: mrcImage3DWindowing.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImage3DWindowing.o: mrcImage3DWindowing.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImage3DWindowing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImage3DWindowing.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/X86LINUX64/.Depend
index edbe6fe..52480b6 100644 (file)
--- a/src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAbnormalValueRemove.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAbnormalValueRemove.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageAbnormalValueRemove.o: mrcImageAbnormalValueRemove.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageAbnormalValueRemove.o: mrcImageAbnormalValueRemove.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAbnormalValueRemove.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Random.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86LINUX64/.Depend
index 808254e..5888ba2 100644 (file)
--- a/src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageActinSingleParticleAnalysis.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageActinSingleParticleAnalysis.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ mrcImageActinSingleParticleAnalysis.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,28 +84,30 @@ mrcImageActinSingleParticleAnalysis.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageActinSingleParticleAnalysis.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageAdaptiveBinalization/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageAdaptiveBinalization/src/X86LINUX64/.Depend
index 5bf10c3..9b35768 100644 (file)
--- a/src/Tools/mrcImage/mrcImageAdaptiveBinalization/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAdaptiveBinalization/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAdaptiveBinalization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAdaptiveBinalization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageAdaptiveBinalization.o: mrcImageAdaptiveBinalization.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,29 +82,31 @@ mrcImageAdaptiveBinalization.o: mrcImageAdaptiveBinalization.c \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h ../inc/config.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h ../inc/config.h \
  ../inc/../inc/mrcImageAdaptiveBinalization.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageAdd/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageAdd/src/X86LINUX64/.Depend
index 9f872af..8bcd9a2 100644 (file)
--- a/src/Tools/mrcImage/mrcImageAdd/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAdd/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAdd.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAdd.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrcImageAdd.o: mrcImageAdd.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,17 +82,18 @@ mrcImageAdd.o: mrcImageAdd.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAdd.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/lmrcImageMultiplying.h \
@@ -97,14 +101,15 @@ mrcImageAdd.o: mrcImageAdd.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageAddValue/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageAddValue/src/X86LINUX64/.Depend
index cd211f9..b1e0ffc 100644 (file)
--- a/src/Tools/mrcImage/mrcImageAddValue/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAddValue/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAddValue.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAddValue.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageAddValue.o: mrcImageAddValue.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageAddValue.o: mrcImageAddValue.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAddValue.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageAddValue.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageAreaCalc/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageAreaCalc/src/X86LINUX64/.Depend
index c085371..166766d 100644 (file)
--- a/src/Tools/mrcImage/mrcImageAreaCalc/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAreaCalc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAreaCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAreaCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageAreaCalc.o: mrcImageAreaCalc.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageAreaCalc.o: mrcImageAreaCalc.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAreaCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageCalcArea.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageAssignedToTFofPDB/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageAssignedToTFofPDB/src/X86LINUX64/.Depend
index 7d898e2..57a8cd5 100644 (file)
--- a/src/Tools/mrcImage/mrcImageAssignedToTFofPDB/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAssignedToTFofPDB/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAssignedToTFofPDB.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAssignedToTFofPDB.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageAssignedToTFofPDB.o: mrcImageAssignedToTFofPDB.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,28 +84,30 @@ mrcImageAssignedToTFofPDB.o: mrcImageAssignedToTFofPDB.c \
  ../inc/../inc/mrcImageAssignedToTFofPDB.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86LINUX64/.Depend
index 0cafbb3..ee5e86a 100644 (file)
--- a/src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoCorrelationWithWindowing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoCorrelationWithWindowing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ mrcImageAutoCorrelationWithWindowing.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,29 +84,31 @@ mrcImageAutoCorrelationWithWindowing.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoCorrelationWithWindowing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageWindowing.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86LINUX64/.Depend
index b8b5446..fc7735a 100644 (file)
--- a/src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoFilamentExtract.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoFilamentExtract.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageAutoFilamentExtract.o: mrcImageAutoFilamentExtract.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageAutoFilamentExtract.o: mrcImageAutoFilamentExtract.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoFilamentExtract.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageAutoFilamentExtractResultAnalysis/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageAutoFilamentExtractResultAnalysis/src/X86LINUX64/.Depend
index a56c43b..986e923 100644 (file)
--- a/src/Tools/mrcImage/mrcImageAutoFilamentExtractResultAnalysis/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAutoFilamentExtractResultAnalysis/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoFilamentExtractResultAnalysis.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoFilamentExtractResultAnalysis.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ mrcImageAutoFilamentExtractResultAnalysis.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,29 +84,31 @@ mrcImageAutoFilamentExtractResultAnalysis.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoFilamentExtractResultAnalysis.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lllExtractdYEstimate.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageAutoRotationCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageAutoRotationCorrelation/src/X86LINUX64/.Depend
index 50c873c..2908c93 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageAutoRotationCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAutoRotationCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoRotationCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoRotationCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageAutoRotationCorrelation.o: mrcImageAutoRotationCorrelation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImageAutoRotationCorrelation.o: mrcImageAutoRotationCorrelation.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoRotationCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageCorrelation.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/PVM.h \
@@ -100,14 +104,15 @@ mrcImageAutoRotationCorrelation.o: mrcImageAutoRotationCorrelation.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -115,14 +120,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/X86LINUX64/.Depend
index dff945e..4f0d0dc 100644 (file)
--- a/src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoRotationCorrelation3D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoRotationCorrelation3D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageAutoRotationCorrelation3D.o: mrcImageAutoRotationCorrelation3D.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImageAutoRotationCorrelation3D.o: mrcImageAutoRotationCorrelation3D.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAutoRotationCorrelation3D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageCorrelation.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/PVM.h \
@@ -98,14 +102,15 @@ mrcImageAutoRotationCorrelation3D.o: mrcImageAutoRotationCorrelation3D.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageAutoRotationCorrelationResultPrint/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageAutoRotationCorrelationResultPrint/src/X86LINUX64/.Depend
index 3d0094b..3869a4e 100644 (file)
--- a/src/Tools/mrcImage/mrcImageAutoRotationCorrelationResultPrint/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAutoRotationCorrelationResultPrint/src/X86LINUX64/.Depend
@@ -4,11 +4,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -20,7 +21,7 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  ../inc/../inc/mrcImageAutoRotationCorrelationResultPrint.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -31,11 +32,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,7 +49,7 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  ../inc/../inc/mrcImageAutoRotationCorrelationResultPrint.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -60,11 +62,12 @@ mrcImageAutoRotationCorrelationResultPrint.o: \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,13 +79,14 @@ mrcImageAutoRotationCorrelationResultPrint.o: \
  ../inc/../inc/mrcImageAutoRotationCorrelationResultPrint.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageCorrelation.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/PVM.h \
@@ -95,11 +99,12 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,11 +115,12 @@ util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageAverage/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageAverage/src/X86LINUX64/.Depend
index 286ccfa..33a96da 100644 (file)
--- a/src/Tools/mrcImage/mrcImageAverage/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAverage/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAverage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageAverage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -67,21 +69,22 @@ mrcImageAverage.o: mrcImageAverage.c \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /usr/include/stdio.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -92,19 +95,21 @@ mrcImageAverage.o: mrcImageAverage.c \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageAverage.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageBandPassFilter/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageBandPassFilter/src/X86LINUX64/.Depend
index ab01f29..d12c2e4 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageBandPassFilter/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageBandPassFilter/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageBandPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageBandPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageBandPassFilter.o: mrcImageBandPassFilter.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +84,28 @@ mrcImageBandPassFilter.o: mrcImageBandPassFilter.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageBandPassFilter.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageBilateralFilter/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageBilateralFilter/src/X86LINUX64/.Depend
index f53f1a7..4621122 100644 (file)
--- a/src/Tools/mrcImage/mrcImageBilateralFilter/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageBilateralFilter/src/X86LINUX64/.Depend
@@ -94,6 +94,7 @@ mrcImageBilateralFilter.o: mrcImageBilateralFilter.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageBilateralFilter.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \

diff --git a/src/Tools/mrcImage/mrcImageBinalization/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageBinalization/src/X86LINUX64/.Depend
index fe95283..a31ecb1 100644 (file)
--- a/src/Tools/mrcImage/mrcImageBinalization/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageBinalization/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageBinalization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageBinalization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageBinalization.o: mrcImageBinalization.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageBinalization.o: mrcImageBinalization.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageBinalization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageBinarization.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageBlockMerge/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageBlockMerge/src/X86LINUX64/.Depend
index 225a239..9661bb2 100644 (file)
--- a/src/Tools/mrcImage/mrcImageBlockMerge/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageBlockMerge/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageBlockMerge.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageBlockMerge.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageBlockMerge.o: mrcImageBlockMerge.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageBlockMerge.o: mrcImageBlockMerge.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageBlockMerge.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86LINUX64/.Depend
index 5e76803..26ba694 100644 (file)
--- a/src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageBoundaryInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageBoundaryInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageBoundaryInfo.o: mrcImageBoundaryInfo.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageBoundaryInfo.o: mrcImageBoundaryInfo.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageBoundaryInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCCDNoiseRemove/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCCDNoiseRemove/src/X86LINUX64/.Depend
index 6724be7..5d6c727 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCCDNoiseRemove/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCCDNoiseRemove/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCCDNoiseRemove.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCCDNoiseRemove.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCCDNoiseRemove.o: mrcImageCCDNoiseRemove.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageCCDNoiseRemove.o: mrcImageCCDNoiseRemove.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCCDNoiseRemove.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/File.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCTFCompensation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCTFCompensation/src/X86LINUX64/.Depend
index 60ad98d..83d1741 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCTFCompensation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCTFCompensation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCTFCompensation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCTFCompensation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCTFCompensation.o: mrcImageCTFCompensation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,18 +84,19 @@ mrcImageCTFCompensation.o: mrcImageCTFCompensation.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageCTFCompensation.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/Memory.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/lmrcImageCTFCompensation.h \
  /home/people/tacyas/Eos/include/Memory.h \
@@ -100,14 +104,15 @@ mrcImageCTFCompensation.o: mrcImageCTFCompensation.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -115,14 +120,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86LINUX64/.Depend
index fa38cc0..01693b4 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCTFCompensationForTiltImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCTFCompensationForTiltImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ mrcImageCTFCompensationForTiltImage.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,17 +84,18 @@ mrcImageCTFCompensationForTiltImage.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCTFCompensationForTiltImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/lmrcImageROI2D.h \
@@ -102,14 +106,15 @@ mrcImageCTFCompensationForTiltImage.o: \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -117,14 +122,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCTFDetermination/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCTFDetermination/src/X86LINUX64/.Depend
index 6ea9a9b..79bfab7 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCTFDetermination/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCTFDetermination/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCTFDetermination.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCTFDetermination.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCTFDetermination.o: mrcImageCTFDetermination.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImageCTFDetermination.o: mrcImageCTFDetermination.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCTFDetermination.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageCTFDetermination.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/lllDataCTFCompensate.h \
@@ -112,14 +116,15 @@ mrcImageCTFDetermination.o: mrcImageCTFDetermination.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -127,14 +132,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCTFObservation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCTFObservation/src/X86LINUX64/.Depend
index e2e5878..cf2c958 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCTFObservation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCTFObservation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCTFObservation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCTFObservation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCTFObservation.o: mrcImageCTFObservation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageCTFObservation.o: mrcImageCTFObservation.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCTFObservation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCTFSN/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCTFSN/src/X86LINUX64/.Depend
index 4451471..07c1c83 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCTFSN/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCTFSN/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCTFSN.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCTFSN.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCTFSN.o: mrcImageCTFSN.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,26 +83,28 @@ mrcImageCTFSN.o: mrcImageCTFSN.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCTFSN.h /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -107,14 +112,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCVE/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCVE/src/X86LINUX64/.Depend
index 0443c70..4353af4 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCVE/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCVE/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCVE.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCVE.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrcImageCVE.o: mrcImageCVE.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,26 +82,28 @@ mrcImageCVE.o: mrcImageCVE.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCVE.h /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -106,14 +111,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCenterDensityChange/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCenterDensityChange/src/X86LINUX64/.Depend
index 4f7671f..459b01a 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCenterDensityChange/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCenterDensityChange/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCenterDensityChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCenterDensityChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCenterDensityChange.o: mrcImageCenterDensityChange.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageCenterDensityChange.o: mrcImageCenterDensityChange.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCenterDensityChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCenterGet/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCenterGet/src/X86LINUX64/.Depend
index 787c475..bc646d5 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCenterGet/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCenterGet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCenterGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCenterGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCenterGet.o: mrcImageCenterGet.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageCenterGet.o: mrcImageCenterGet.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCenterGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 mrcImageCenterGet2.o: mrcImageCenterGet2.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -114,29 +119,31 @@ mrcImageCenterGet2.o: mrcImageCenterGet2.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCenterGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -144,14 +151,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCenterOfMassCalculate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCenterOfMassCalculate/src/X86LINUX64/.Depend
index 05ec0e7..3ef60e2 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCenterOfMassCalculate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCenterOfMassCalculate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCenterOfMassCalculate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCenterOfMassCalculate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCenterOfMassCalculate.o: mrcImageCenterOfMassCalculate.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageCenterOfMassCalculate.o: mrcImageCenterOfMassCalculate.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCenterOfMassCalculate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageCentre.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCircumferentialProjection/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCircumferentialProjection/src/X86LINUX64/.Depend
index 8bd9823..b0ad713 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCircumferentialProjection/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCircumferentialProjection/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCircumferentialProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCircumferentialProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCircumferentialProjection.o: mrcImageCircumferentialProjection.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageCircumferentialProjection.o: mrcImageCircumferentialProjection.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCircumferentialProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageClosing/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageClosing/src/X86LINUX64/.Depend
index 541141c..18bcdda 100644 (file)
--- a/src/Tools/mrcImage/mrcImageClosing/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageClosing/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageClosing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageClosing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageClosing.o: mrcImageClosing.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,32 @@ mrcImageClosing.o: mrcImageClosing.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageClosing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/lmrcImageMorphology.h \
+ /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86LINUX64/.Depend
index 418caf9..c41a94e 100644 (file)
--- a/src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageClusterAnalysis.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageClusterAnalysis.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageClusterAnalysis.o: mrcImageClusterAnalysis.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,12 +81,12 @@ mrcImageClusterAnalysis.o: mrcImageClusterAnalysis.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h ../inc/config.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h ../inc/config.h \
  ../inc/../inc/mrcImageClusterAnalysis.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -91,6 +94,7 @@ mrcImageClusterAnalysis.o: mrcImageClusterAnalysis.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/nr2.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/lmrcImageMultiplying.h \
@@ -106,14 +110,15 @@ mrcImageClusterAnalysis.o: mrcImageClusterAnalysis.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -121,14 +126,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageColoring/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageColoring/src/X86LINUX64/.Depend
index 332c1a5..2ab8ae2 100644 (file)
--- a/src/Tools/mrcImage/mrcImageColoring/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageColoring/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageColoring.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageColoring.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageColoring.o: mrcImageColoring.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,15 +84,16 @@ mrcImageColoring.o: mrcImageColoring.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageColoring.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/gifFile.h \
  /home/people/tacyas/Eos/include/gif_lib.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -97,14 +101,15 @@ mrcImageColoring.o: mrcImageColoring.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageConnection/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageConnection/src/X86LINUX64/.Depend
index f67f8ac..0bd4194 100644 (file)
--- a/src/Tools/mrcImage/mrcImageConnection/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageConnection/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageConnection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageConnection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageConnection.o: mrcImageConnection.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,27 +84,29 @@ mrcImageConnection.o: mrcImageConnection.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageConnection.h \
  /home/people/tacyas/Eos/include/lmrcImageConnection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageConnectivityNumberCalc/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageConnectivityNumberCalc/src/X86LINUX64/.Depend
index 3833de8..007ca61 100644 (file)
--- a/src/Tools/mrcImage/mrcImageConnectivityNumberCalc/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageConnectivityNumberCalc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageConnectivityNumberCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageConnectivityNumberCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageConnectivityNumberCalc.o: mrcImageConnectivityNumberCalc.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,31 +83,33 @@ mrcImageConnectivityNumberCalc.o: mrcImageConnectivityNumberCalc.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageConnectivityNumberCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  ../inc/mrcImageConnectivityNumberCalc.h \
  /home/people/tacyas/Eos/include/lmrcImageConnectivityNumberCalc.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageContourSurfaceCreate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageContourSurfaceCreate/src/X86LINUX64/.Depend
index fd7ff67..72113a5 100644 (file)
--- a/src/Tools/mrcImage/mrcImageContourSurfaceCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageContourSurfaceCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageContourSurfaceCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageContourSurfaceCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageContourSurfaceCreate.o: mrcImageContourSurfaceCreate.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageContourSurfaceCreate.o: mrcImageContourSurfaceCreate.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageContourSurfaceCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageContourSurface.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageConvolution/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageConvolution/src/X86LINUX64/.Depend
index 4ea8276..01ab18c 100644 (file)
--- a/src/Tools/mrcImage/mrcImageConvolution/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageConvolution/src/X86LINUX64/.Depend
@@ -1,10 +1,10 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
  /usr/include/bits/waitstatus.h /usr/include/endian.h \
@@ -20,22 +20,22 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageConvolution.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
  /usr/include/bits/waitstatus.h /usr/include/endian.h \
@@ -51,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageConvolution.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -64,10 +64,10 @@ mrcImageConvolution.o: mrcImageConvolution.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
  /usr/include/bits/waitstatus.h /usr/include/endian.h \
@@ -83,28 +83,28 @@ mrcImageConvolution.o: mrcImageConvolution.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageConvolution.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/larray2mrc.h \
  /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/larray2mrc.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
  /usr/include/bits/waitstatus.h /usr/include/endian.h \
@@ -117,10 +117,10 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
  /usr/include/bits/waitstatus.h /usr/include/endian.h \

diff --git a/src/Tools/mrcImage/mrcImageCoordinateChange/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCoordinateChange/src/X86LINUX64/.Depend
index ee2820f..be0259b 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCoordinateChange/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCoordinateChange/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCoordinateChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCoordinateChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCoordinateChange.o: mrcImageCoordinateChange.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageCoordinateChange.o: mrcImageCoordinateChange.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCoordinateChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCoreImageCalc/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCoreImageCalc/src/X86LINUX64/.Depend
index 38c9a46..19a71a6 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCoreImageCalc/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCoreImageCalc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCoreImageCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCoreImageCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCoreImageCalc.o: mrcImageCoreImageCalc.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ mrcImageCoreImageCalc.o: mrcImageCoreImageCalc.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCoreImageCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -93,18 +96,20 @@ mrcImageCoreImageCalc.o: mrcImageCoreImageCalc.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/nr2.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCorrelation/src/X86LINUX64/.Depend
index 691c9a9..373ebfa 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCorrelation.o: mrcImageCorrelation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,15 +84,16 @@ mrcImageCorrelation.o: mrcImageCorrelation.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageCorrelation.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageCorrelation.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/PVM.h \
@@ -99,14 +103,15 @@ mrcImageCorrelation.o: mrcImageCorrelation.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -114,14 +119,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCorrelationInFourierSpace/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCorrelationInFourierSpace/src/X86LINUX64/.Depend
index 36f3d46..317b9b8 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCorrelationInFourierSpace/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCorrelationInFourierSpace/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCorrelationInFourierSpace.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCorrelationInFourierSpace.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCorrelationInFourierSpace.o: mrcImageCorrelationInFourierSpace.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageCorrelationInFourierSpace.o: mrcImageCorrelationInFourierSpace.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCorrelationInFourierSpace.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCorrelationServer/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCorrelationServer/src/X86LINUX64/.Depend
index 9cdf7ca..08a03d2 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCorrelationServer/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCorrelationServer/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCorrelationServer.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCorrelationServer.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCorrelationServer.o: mrcImageCorrelationServer.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,31 +83,33 @@ mrcImageCorrelationServer.o: mrcImageCorrelationServer.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCorrelationServer.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/lmrcImageCorrelation.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/PVM.h \
  /home/people/tacyas/Eos/include/lmrcImageSSDA.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCrystalCreate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCrystalCreate/src/X86LINUX64/.Depend
index 39c1077..9410b1e 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCrystalCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCrystalCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCrystalCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCrystalCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCrystalCreate.o: mrcImageCrystalCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,28 +84,30 @@ mrcImageCrystalCreate.o: mrcImageCrystalCreate.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageCrystalCreate.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageCrystalCreate.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCutAndSetInArray/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCutAndSetInArray/src/X86LINUX64/.Depend
index b98dd3f..3a220a0 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCutAndSetInArray/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCutAndSetInArray/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCutAndSetInArray.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCutAndSetInArray.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCutAndSetInArray.o: mrcImageCutAndSetInArray.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageCutAndSetInArray.o: mrcImageCutAndSetInArray.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCutAndSetInArray.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageCylinderSection/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageCylinderSection/src/X86LINUX64/.Depend
index 372fe3a..77992f4 100644 (file)
--- a/src/Tools/mrcImage/mrcImageCylinderSection/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCylinderSection/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCylinderSection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCylinderSection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCylinderSection.o: mrcImageCylinderSection.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageCylinderSection.o: mrcImageCylinderSection.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCylinderSection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageDeadPixelCorrection/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageDeadPixelCorrection/src/X86LINUX64/.Depend
index 3203008..813121d 100644 (file)
--- a/src/Tools/mrcImage/mrcImageDeadPixelCorrection/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDeadPixelCorrection/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDeadPixelCorrection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDeadPixelCorrection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageDeadPixelCorrection.o: mrcImageDeadPixelCorrection.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageDeadPixelCorrection.o: mrcImageDeadPixelCorrection.c \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/nr2.h \
  ../inc/config.h ../inc/../inc/mrcImageDeadPixelCorrection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageDensityChangeEstimation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageDensityChangeEstimation/src/X86LINUX64/.Depend
index 92c8d8d..7b05358 100644 (file)
--- a/src/Tools/mrcImage/mrcImageDensityChangeEstimation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDensityChangeEstimation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDensityChangeEstimation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDensityChangeEstimation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageDensityChangeEstimation.o: mrcImageDensityChangeEstimation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImageDensityChangeEstimation.o: mrcImageDensityChangeEstimation.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDensityChangeEstimation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageDensity.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -98,14 +102,15 @@ mrcImageDensityChangeEstimation.o: mrcImageDensityChangeEstimation.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageDensityInfo/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageDensityInfo/src/X86LINUX64/.Depend
index 5916879..5dee640 100644 (file)
--- a/src/Tools/mrcImage/mrcImageDensityInfo/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDensityInfo/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDensityInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDensityInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageDensityInfo.o: mrcImageDensityInfo.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,18 +83,19 @@ mrcImageDensityInfo.o: mrcImageDensityInfo.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDensityInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageModeChange.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/lmrcImageDensity.h \
@@ -101,14 +105,15 @@ mrcImageDensityInfo.o: mrcImageDensityInfo.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -116,14 +121,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageDensityNormalization/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageDensityNormalization/src/X86LINUX64/.Depend
index fd20d4c..c2670d0 100644 (file)
--- a/src/Tools/mrcImage/mrcImageDensityNormalization/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDensityNormalization/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDensityNormalization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDensityNormalization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageDensityNormalization.o: mrcImageDensityNormalization.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageDensityNormalization.o: mrcImageDensityNormalization.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDensityNormalization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageDensityNormalizationByImage/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageDensityNormalizationByImage/src/X86LINUX64/.Depend
index 61a12d6..d75bff1 100644 (file)
--- a/src/Tools/mrcImage/mrcImageDensityNormalizationByImage/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDensityNormalizationByImage/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDensityNormalizationByImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDensityNormalizationByImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ mrcImageDensityNormalizationByImage.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,30 +84,32 @@ mrcImageDensityNormalizationByImage.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDensityNormalizationByImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageDensityNormalizationByImage.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageDilation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageDilation/src/X86LINUX64/.Depend
index 0382c5c..95465da 100644 (file)
--- a/src/Tools/mrcImage/mrcImageDilation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDilation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDilation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDilation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageDilation.o: mrcImageDilation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,32 @@ mrcImageDilation.o: mrcImageDilation.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDilation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/lmrcImageMorphology.h \
+ /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageDisplayDensityAsTempFactor/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageDisplayDensityAsTempFactor/src/X86LINUX64/.Depend
index 45e41f8..bf6a5b5 100644 (file)
--- a/src/Tools/mrcImage/mrcImageDisplayDensityAsTempFactor/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDisplayDensityAsTempFactor/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDisplayDensityAsTempFactor.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDisplayDensityAsTempFactor.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ mrcImageDisplayDensityAsTempFactor.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,15 +84,16 @@ mrcImageDisplayDensityAsTempFactor.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDisplayDensityAsTempFactor.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -98,14 +102,15 @@ mrcImageDisplayDensityAsTempFactor.o: \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageDistanceConversion/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageDistanceConversion/src/X86LINUX64/.Depend
index 85cf9ec..f6825b9 100644 (file)
--- a/src/Tools/mrcImage/mrcImageDistanceConversion/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDistanceConversion/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDistanceConversion.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDistanceConversion.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageDistanceConversion.o: mrcImageDistanceConversion.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,31 +83,33 @@ mrcImageDistanceConversion.o: mrcImageDistanceConversion.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDistanceConversion.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  ../inc/mrcImageDistanceConversion.h \
  /home/people/tacyas/Eos/include/lmrcImageDistanceConversion.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageDivideInfoForTomography/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageDivideInfoForTomography/src/X86LINUX64/.Depend
index 8f17e2f..be72182 100644 (file)
--- a/src/Tools/mrcImage/mrcImageDivideInfoForTomography/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDivideInfoForTomography/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDivideInfoForTomography.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDivideInfoForTomography.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageDivideInfoForTomography.o: mrcImageDivideInfoForTomography.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageDivideInfoForTomography.o: mrcImageDivideInfoForTomography.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDivideInfoForTomography.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageDivideIntoTwoImages/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageDivideIntoTwoImages/src/X86LINUX64/.Depend
index b7df624..d71343c 100644 (file)
--- a/src/Tools/mrcImage/mrcImageDivideIntoTwoImages/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDivideIntoTwoImages/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDivideIntoTwoImages.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDivideIntoTwoImages.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageDivideIntoTwoImages.o: mrcImageDivideIntoTwoImages.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageDivideIntoTwoImages.o: mrcImageDivideIntoTwoImages.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageDivideIntoTwoImages.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageEdgeImageGet/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageEdgeImageGet/src/X86LINUX64/.Depend
index f0287a1..fda6e7f 100644 (file)
--- a/src/Tools/mrcImage/mrcImageEdgeImageGet/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageEdgeImageGet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageEdgeImageGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageEdgeImageGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageEdgeImageGet.o: mrcImageEdgeImageGet.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageEdgeImageGet.o: mrcImageEdgeImageGet.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageEdgeImageGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageEnhancementWithFuzzySets/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageEnhancementWithFuzzySets/src/X86LINUX64/.Depend
index 2b50cf2..9cf229b 100644 (file)
--- a/src/Tools/mrcImage/mrcImageEnhancementWithFuzzySets/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageEnhancementWithFuzzySets/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageEnhancementWithFuzzySets.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageEnhancementWithFuzzySets.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageEnhancementWithFuzzySets.o: mrcImageEnhancementWithFuzzySets.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageEnhancementWithFuzzySets.o: mrcImageEnhancementWithFuzzySets.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageEnhancementWithFuzzySets.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageErosion/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageErosion/src/X86LINUX64/.Depend
index 8802ace..1e83ee7 100644 (file)
--- a/src/Tools/mrcImage/mrcImageErosion/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageErosion/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageErosion.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageErosion.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageErosion.o: mrcImageErosion.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageErosion.o: mrcImageErosion.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageErosion.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageMorphology.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageEstimateTiltImage/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageEstimateTiltImage/src/X86LINUX64/.Depend
index 0aec84e..4ce8e90 100644 (file)
--- a/src/Tools/mrcImage/mrcImageEstimateTiltImage/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageEstimateTiltImage/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageEstimateTiltImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageEstimateTiltImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageEstimateTiltImage.o: mrcImageEstimateTiltImage.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,15 +83,16 @@ mrcImageEstimateTiltImage.o: mrcImageEstimateTiltImage.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageEstimateTiltImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -96,14 +100,15 @@ mrcImageEstimateTiltImage.o: mrcImageEstimateTiltImage.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageExpression/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageExpression/src/X86LINUX64/.Depend
index 8856dec..ba68588 100644 (file)
--- a/src/Tools/mrcImage/mrcImageExpression/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageExpression/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageExpression.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageExpression.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageExpression.o: mrcImageExpression.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageExpression.o: mrcImageExpression.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageExpression.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageFFT/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageFFT/src/X86LINUX64/.Depend
index 0e70a6b..668439c 100644 (file)
--- a/src/Tools/mrcImage/mrcImageFFT/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFFT/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFFT.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFFT.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrcImageFFT.o: mrcImageFFT.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,26 +82,28 @@ mrcImageFFT.o: mrcImageFFT.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFFT.h /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -106,14 +111,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageFFTLayerLineExtraction/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageFFTLayerLineExtraction/src/X86LINUX64/.Depend
index 42dc810..0ff1153 100644 (file)
--- a/src/Tools/mrcImage/mrcImageFFTLayerLineExtraction/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFFTLayerLineExtraction/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFFTLayerLineExtraction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFFTLayerLineExtraction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageFFTLayerLineExtraction.o: mrcImageFFTLayerLineExtraction.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,29 +84,31 @@ mrcImageFFTLayerLineExtraction.o: mrcImageFFTLayerLineExtraction.c \
  ../inc/../inc/mrcImageFFTLayerLineExtraction.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/llData.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageFOMCalc.org/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageFOMCalc.org/src/X86LINUX64/.Depend
index f26c7f7..fdd5103 100644 (file)
--- a/src/Tools/mrcImage/mrcImageFOMCalc.org/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFOMCalc.org/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFOMCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFOMCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageFOMCalc.o: mrcImageFOMCalc.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ mrcImageFOMCalc.o: mrcImageFOMCalc.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFOMCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -93,19 +96,21 @@ mrcImageFOMCalc.o: mrcImageFOMCalc.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageFOMCalc.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageFOMCalc/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageFOMCalc/src/X86LINUX64/.Depend
index f26c7f7..fdd5103 100644 (file)
--- a/src/Tools/mrcImage/mrcImageFOMCalc/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFOMCalc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFOMCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFOMCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageFOMCalc.o: mrcImageFOMCalc.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ mrcImageFOMCalc.o: mrcImageFOMCalc.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFOMCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -93,19 +96,21 @@ mrcImageFOMCalc.o: mrcImageFOMCalc.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageFOMCalc.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageFeatureExtraction/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageFeatureExtraction/src/X86LINUX64/.Depend
index 73efd3b..b444919 100644 (file)
--- a/src/Tools/mrcImage/mrcImageFeatureExtraction/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFeatureExtraction/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFeatureExtraction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFeatureExtraction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageFeatureExtraction.o: mrcImageFeatureExtraction.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageFeatureExtraction.o: mrcImageFeatureExtraction.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFeatureExtraction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageFeatureExtraction.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageFilamentSearch/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageFilamentSearch/src/X86LINUX64/.Depend
index 51fbf62..1fd00cd 100644 (file)
--- a/src/Tools/mrcImage/mrcImageFilamentSearch/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFilamentSearch/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFilamentSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFilamentSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageFilamentSearch.o: mrcImageFilamentSearch.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,23 +83,24 @@ mrcImageFilamentSearch.o: mrcImageFilamentSearch.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFilamentSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -104,14 +108,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageFilterCreate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageFilterCreate/src/X86LINUX64/.Depend
index 2142fe1..b1160b8 100644 (file)
--- a/src/Tools/mrcImage/mrcImageFilterCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFilterCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFilterCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFilterCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageFilterCreate.o: mrcImageFilterCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageFilterCreate.o: mrcImageFilterCreate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFilterCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageFilterCreate.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageFilteringbyFile/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageFilteringbyFile/src/X86LINUX64/.Depend
index cdff9ae..6c8a89d 100644 (file)
--- a/src/Tools/mrcImage/mrcImageFilteringbyFile/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFilteringbyFile/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFilteringbyFile.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFilteringbyFile.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageFilteringbyFile.o: mrcImageFilteringbyFile.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageFilteringbyFile.o: mrcImageFilteringbyFile.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFilteringbyFile.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageFilteringbyFileForVariance/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageFilteringbyFileForVariance/src/X86LINUX64/.Depend
index 13a2515..6416084 100644 (file)
--- a/src/Tools/mrcImage/mrcImageFilteringbyFileForVariance/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFilteringbyFileForVariance/src/X86LINUX64/.Depend
@@ -2,14 +2,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -20,26 +21,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFilteringbyFileForVariance.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -50,12 +52,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFilteringbyFileForVariance.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -64,14 +66,15 @@ mrcImageFilteringbyFileForVariance.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -82,29 +85,31 @@ mrcImageFilteringbyFileForVariance.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFilteringbyFileForVariance.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageFourierPowerSpectrum/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageFourierPowerSpectrum/src/X86LINUX64/.Depend
index 04b30b4..0dd9002 100644 (file)
--- a/src/Tools/mrcImage/mrcImageFourierPowerSpectrum/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFourierPowerSpectrum/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFourierPowerSpectrum.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFourierPowerSpectrum.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageFourierPowerSpectrum.o: mrcImageFourierPowerSpectrum.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +84,28 @@ mrcImageFourierPowerSpectrum.o: mrcImageFourierPowerSpectrum.c \
  ../inc/../inc/mrcImageFourierPowerSpectrum.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86LINUX64/.Depend
index 7e37118..32742dd 100644 (file)
--- a/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFourierShellCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFourierShellCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageFourierShellCorrelation.o: mrcImageFourierShellCorrelation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,32 +83,34 @@ mrcImageFourierShellCorrelation.o: mrcImageFourierShellCorrelation.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFourierShellCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/lmrcImageFourierShellCorrelation.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/X86LINUX64/.Depend
index 337b378..9c03dd5 100644 (file)
--- a/src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFractalFourierShellCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFractalFourierShellCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ mrcImageFractalFourierShellCorrelation.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,31 +84,33 @@ mrcImageFractalFourierShellCorrelation.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFractalFourierShellCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageFourierShellCorrelation.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageFractalFrourierShellCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageFractalFrourierShellCorrelation/src/X86LINUX64/.Depend
index 504bd56..e760039 100644 (file)
--- a/src/Tools/mrcImage/mrcImageFractalFrourierShellCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFractalFrourierShellCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFractalFrourierShellCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFractalFrourierShellCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ mrcImageFractalFrourierShellCorrelation.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,28 +84,30 @@ mrcImageFractalFrourierShellCorrelation.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageFractalFrourierShellCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageGaussDisc/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageGaussDisc/src/X86LINUX64/.Depend
index 812721f..ce636c0 100644 (file)
--- a/src/Tools/mrcImage/mrcImageGaussDisc/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageGaussDisc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageGaussDisc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageGaussDisc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageGaussDisc.o: mrcImageGaussDisc.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageGaussDisc.o: mrcImageGaussDisc.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageGaussDisc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageGaussSphere/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageGaussSphere/src/X86LINUX64/.Depend
index 27a0f90..c1bb1f3 100644 (file)
--- a/src/Tools/mrcImage/mrcImageGaussSphere/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageGaussSphere/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageGaussSphere.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageGaussSphere.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageGaussSphere.o: mrcImageGaussSphere.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageGaussSphere.o: mrcImageGaussSphere.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageGaussSphere.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageHeaderChange/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageHeaderChange/src/X86LINUX64/.Depend
index f2bd72d..41a9f17 100644 (file)
--- a/src/Tools/mrcImage/mrcImageHeaderChange/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHeaderChange/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHeaderChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHeaderChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageHeaderChange.o: mrcImageHeaderChange.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageHeaderChange.o: mrcImageHeaderChange.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHeaderChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageHelicalAveraging/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageHelicalAveraging/src/X86LINUX64/.Depend
index f8234b8..c424e9b 100644 (file)
--- a/src/Tools/mrcImage/mrcImageHelicalAveraging/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHelicalAveraging/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalAveraging.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalAveraging.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageHelicalAveraging.o: mrcImageHelicalAveraging.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageHelicalAveraging.o: mrcImageHelicalAveraging.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalAveraging.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageHelicalConvolution/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageHelicalConvolution/src/X86LINUX64/.Depend
index e958acf..f826413 100644 (file)
--- a/src/Tools/mrcImage/mrcImageHelicalConvolution/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHelicalConvolution/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalConvolution.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalConvolution.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageHelicalConvolution.o: mrcImageHelicalConvolution.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageHelicalConvolution.o: mrcImageHelicalConvolution.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalConvolution.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageHelicalMappingFrom2DImage/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageHelicalMappingFrom2DImage/src/X86LINUX64/.Depend
index 6315bd7..510ad58 100644 (file)
--- a/src/Tools/mrcImage/mrcImageHelicalMappingFrom2DImage/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHelicalMappingFrom2DImage/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalMappingFrom2DImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalMappingFrom2DImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageHelicalMappingFrom2DImage.o: mrcImageHelicalMappingFrom2DImage.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageHelicalMappingFrom2DImage.o: mrcImageHelicalMappingFrom2DImage.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalMappingFrom2DImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageHelicalMasking/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageHelicalMasking/src/X86LINUX64/.Depend
index 74da7e6..2c718cb 100644 (file)
--- a/src/Tools/mrcImage/mrcImageHelicalMasking/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHelicalMasking/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalMasking.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalMasking.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageHelicalMasking.o: mrcImageHelicalMasking.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageHelicalMasking.o: mrcImageHelicalMasking.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalMasking.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageHelicalMaskingBy2DImage/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageHelicalMaskingBy2DImage/src/X86LINUX64/.Depend
index 9d4e071..df09c7b 100644 (file)
--- a/src/Tools/mrcImage/mrcImageHelicalMaskingBy2DImage/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHelicalMaskingBy2DImage/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalMaskingBy2DImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalMaskingBy2DImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageHelicalMaskingBy2DImage.o: mrcImageHelicalMaskingBy2DImage.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageHelicalMaskingBy2DImage.o: mrcImageHelicalMaskingBy2DImage.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalMaskingBy2DImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageHelicalProjection/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageHelicalProjection/src/X86LINUX64/.Depend
index 823fd09..459dcd5 100644 (file)
--- a/src/Tools/mrcImage/mrcImageHelicalProjection/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHelicalProjection/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageHelicalProjection.o: mrcImageHelicalProjection.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageHelicalProjection.o: mrcImageHelicalProjection.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHelicalProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageHighPassFilter/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageHighPassFilter/src/X86LINUX64/.Depend
index 8e6b945..a3be184 100644 (file)
--- a/src/Tools/mrcImage/mrcImageHighPassFilter/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHighPassFilter/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHighPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHighPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageHighPassFilter.o: mrcImageHighPassFilter.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +84,28 @@ mrcImageHighPassFilter.o: mrcImageHighPassFilter.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageHighPassFilter.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageHighlighting/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageHighlighting/src/X86LINUX64/.Depend
index b82b6a9..3901687 100644 (file)
--- a/src/Tools/mrcImage/mrcImageHighlighting/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHighlighting/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHighlighting.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageHighlighting.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageHighlighting.o: mrcImageHighlighting.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +84,28 @@ mrcImageHighlighting.o: mrcImageHighlighting.c /usr/include/stdio.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageInfo/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageInfo/src/X86LINUX64/.Depend
index 698a045..5ab9b3b 100644 (file)
--- a/src/Tools/mrcImage/mrcImageInfo/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageInfo/src/X86LINUX64/.Depend
@@ -92,7 +92,8 @@ mrcImageInfo.o: mrcImageInfo.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \

diff --git a/src/Tools/mrcImage/mrcImageLabeling/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageLabeling/src/X86LINUX64/.Depend
index 4a5cde8..ee195a5 100644 (file)
--- a/src/Tools/mrcImage/mrcImageLabeling/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageLabeling/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageLabeling.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageLabeling.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageLabeling.o: mrcImageLabeling.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageLabeling.o: mrcImageLabeling.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageLabeling.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageLabeling.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageLowPassFilter/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageLowPassFilter/src/X86LINUX64/.Depend
index 1c9b0df..db16485 100644 (file)
--- a/src/Tools/mrcImage/mrcImageLowPassFilter/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageLowPassFilter/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageLowPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageLowPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageLowPassFilter.o: mrcImageLowPassFilter.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +84,28 @@ mrcImageLowPassFilter.o: mrcImageLowPassFilter.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageLowPassFilter.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMagnificationChange/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMagnificationChange/src/X86LINUX64/.Depend
index ae4d904..f2abbf0 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMagnificationChange/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMagnificationChange/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMagnificationChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMagnificationChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ lmrcImageMagnificationChange.o: lmrcImageMagnificationChange.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ lmrcImageMagnificationChange.o: lmrcImageMagnificationChange.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMagnificationChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 mrcImageMagnificationChange.o: mrcImageMagnificationChange.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -114,29 +119,31 @@ mrcImageMagnificationChange.o: mrcImageMagnificationChange.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMagnificationChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -144,14 +151,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMake2DArrayImage/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMake2DArrayImage/src/X86LINUX64/.Depend
index 6710e39..796e0eb 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMake2DArrayImage/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMake2DArrayImage/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMake2DArrayImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMake2DArrayImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMake2DArrayImage.o: mrcImageMake2DArrayImage.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageMake2DArrayImage.o: mrcImageMake2DArrayImage.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMake2DArrayImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMakeCylinder/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMakeCylinder/src/X86LINUX64/.Depend
index 84a9f3b..0e96181 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMakeCylinder/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMakeCylinder/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMakeCylinder.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMakeCylinder.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMakeCylinder.o: mrcImageMakeCylinder.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageMakeCylinder.o: mrcImageMakeCylinder.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMakeCylinder.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMakeDump/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMakeDump/src/X86LINUX64/.Depend
index 06e0637..73d608d 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMakeDump/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMakeDump/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMakeDump.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMakeDump.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMakeDump.o: mrcImageMakeDump.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +84,28 @@ mrcImageMakeDump.o: mrcImageMakeDump.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageMakeDump.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMakeFromTextFile/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMakeFromTextFile/src/X86LINUX64/.Depend
index 70aeabf..bf13333 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMakeFromTextFile/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMakeFromTextFile/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMakeFromTextFile.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMakeFromTextFile.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMakeFromTextFile.o: mrcImageMakeFromTextFile.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageMakeFromTextFile.o: mrcImageMakeFromTextFile.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMakeFromTextFile.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMakeSphere/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMakeSphere/src/X86LINUX64/.Depend
index d232318..ed3f5ae 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMakeSphere/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMakeSphere/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMakeSphere.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMakeSphere.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMakeSphere.o: mrcImageMakeSphere.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageMakeSphere.o: mrcImageMakeSphere.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMakeSphere.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMappingtoPdb/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMappingtoPdb/src/X86LINUX64/.Depend
index 236849d..a1dc109 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMappingtoPdb/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMappingtoPdb/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMappingtoPdb.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMappingtoPdb.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMappingtoPdb.o: mrcImageMappingtoPdb.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImageMappingtoPdb.o: mrcImageMappingtoPdb.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMappingtoPdb.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/pdbInfoGet.h \
@@ -98,14 +102,15 @@ mrcImageMappingtoPdb.o: mrcImageMappingtoPdb.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMasking/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMasking/src/X86LINUX64/.Depend
index 8d081f8..f54284c 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMasking/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMasking/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMasking.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMasking.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMasking.o: mrcImageMasking.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,14 +83,15 @@ mrcImageMasking.o: mrcImageMasking.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMasking.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
@@ -99,14 +103,15 @@ mrcImageMasking.o: mrcImageMasking.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -114,14 +119,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMaskingByImage/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMaskingByImage/src/X86LINUX64/.Depend
index d7d5cba..1a9a87a 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMaskingByImage/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMaskingByImage/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMaskingByImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMaskingByImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMaskingByImage.o: mrcImageMaskingByImage.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageMaskingByImage.o: mrcImageMaskingByImage.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMaskingByImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMergebyside/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMergebyside/src/X86LINUX64/.Depend
index 8496b26..c95b9c4 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMergebyside/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMergebyside/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMergebyside.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMergebyside.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMergebyside.o: mrcImageMergebyside.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageMergebyside.o: mrcImageMergebyside.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMergebyside.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMirroring/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMirroring/src/X86LINUX64/.Depend
index 9accefe..9c41ebb 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMirroring/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMirroring/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMirroring.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMirroring.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMirroring.o: mrcImageMirroring.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageMirroring.o: mrcImageMirroring.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMirroring.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageMirroring.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageModeChange/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageModeChange/src/X86LINUX64/.Depend
index a2b8123..57bc772 100644 (file)
--- a/src/Tools/mrcImage/mrcImageModeChange/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageModeChange/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageModeChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageModeChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageModeChange.o: mrcImageModeChange.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageModeChange.o: mrcImageModeChange.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageModeChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageModeChange.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageModelCreate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageModelCreate/src/X86LINUX64/.Depend
index 894adcd..2ccf637 100644 (file)
--- a/src/Tools/mrcImage/mrcImageModelCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageModelCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageModelCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageModelCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageModelCreate.o: mrcImageModelCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageModelCreate.o: mrcImageModelCreate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageModelCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageModelCreate.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageModelSubfilamentsCreate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageModelSubfilamentsCreate/src/X86LINUX64/.Depend
index 2a4b6f4..58340ca 100644 (file)
--- a/src/Tools/mrcImage/mrcImageModelSubfilamentsCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageModelSubfilamentsCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageModelSubfilamentsCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageModelSubfilamentsCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageModelSubfilamentsCreate.o: mrcImageModelSubfilamentsCreate.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageModelSubfilamentsCreate.o: mrcImageModelSubfilamentsCreate.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageModelSubfilamentsCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMontageCreate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMontageCreate/src/X86LINUX64/.Depend
index 14698e7..4c2319b 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMontageCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMontageCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMontageCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMontageCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMontageCreate.o: mrcImageMontageCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImageMontageCreate.o: mrcImageMontageCreate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMontageCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageMontage.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/lmrcImagePad.h \
@@ -98,14 +102,15 @@ mrcImageMontageCreate.o: mrcImageMontageCreate.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMove/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMove/src/X86LINUX64/.Depend
index fddf663..2646f3b 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMove/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMove/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMove.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMove.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMove.o: mrcImageMove.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageMove.o: mrcImageMove.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMove.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageMove.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/X86LINUX64/.Depend
index bede6ba..4eb9e1a 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMultiCTFCompensation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMultiCTFCompensation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMultiCTFCompensation.o: mrcImageMultiCTFCompensation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ mrcImageMultiCTFCompensation.o: mrcImageMultiCTFCompensation.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMultiCTFCompensation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -93,6 +96,7 @@ mrcImageMultiCTFCompensation.o: mrcImageMultiCTFCompensation.c \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/lmrcImageCTFCompensation.h \
  /home/people/tacyas/Eos/include/Memory.h \
@@ -100,14 +104,15 @@ mrcImageMultiCTFCompensation.o: mrcImageMultiCTFCompensation.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -115,14 +120,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMultiCTFDetermination/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMultiCTFDetermination/src/X86LINUX64/.Depend
index f4b6854..2713fc0 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMultiCTFDetermination/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMultiCTFDetermination/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMultiCTFDetermination.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMultiCTFDetermination.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMultiCTFDetermination.o: mrcImageMultiCTFDetermination.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageMultiCTFDetermination.o: mrcImageMultiCTFDetermination.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMultiCTFDetermination.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMultiplying/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMultiplying/src/X86LINUX64/.Depend
index b2d2341..164a5bf 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMultiplying/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMultiplying/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMultiplying.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMultiplying.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMultiplying.o: mrcImageMultiplying.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,28 +84,30 @@ mrcImageMultiplying.o: mrcImageMultiplying.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageMultiplying.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageMultiplying.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/X86LINUX64/.Depend
index 75ed89c..0f8d6d0 100644 (file)
--- a/src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMultiplyingbyFile.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMultiplyingbyFile.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageMultiplyingbyFile.o: mrcImageMultiplyingbyFile.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageMultiplyingbyFile.o: mrcImageMultiplyingbyFile.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageMultiplyingbyFile.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageNLMeansFilter/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageNLMeansFilter/src/X86LINUX64/.Depend
index 11ba7bc..af6c1e8 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageNLMeansFilter/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNLMeansFilter/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNLMeansFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNLMeansFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageNLMeansFilter.o: mrcImageNLMeansFilter.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageNLMeansFilter.o: mrcImageNLMeansFilter.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNLMeansFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageNfoldAxisSearch/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageNfoldAxisSearch/src/X86LINUX64/.Depend
index a32f2fc..87994d7 100644 (file)
--- a/src/Tools/mrcImage/mrcImageNfoldAxisSearch/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNfoldAxisSearch/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNfoldAxisSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNfoldAxisSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageNfoldAxisSearch.o: mrcImageNfoldAxisSearch.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,31 +83,33 @@ mrcImageNfoldAxisSearch.o: mrcImageNfoldAxisSearch.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNfoldAxisSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageTransformDescartesIntoPolar.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/lDescartesIntoPolar.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageNoiseAdd/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageNoiseAdd/src/X86LINUX64/.Depend
index 09f9702..48c5301 100644 (file)
--- a/src/Tools/mrcImage/mrcImageNoiseAdd/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNoiseAdd/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNoiseAdd.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNoiseAdd.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageNoiseAdd.o: mrcImageNoiseAdd.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -82,26 +85,28 @@ mrcImageNoiseAdd.o: mrcImageNoiseAdd.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/Random.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageNoiseCreate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageNoiseCreate/src/X86LINUX64/.Depend
index 8d701a0..522c465 100644 (file)
--- a/src/Tools/mrcImage/mrcImageNoiseCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNoiseCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNoiseCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNoiseCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageNoiseCreate.o: mrcImageNoiseCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageNoiseCreate.o: mrcImageNoiseCreate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNoiseCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/Random.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageNoiseReductionByRelaxation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageNoiseReductionByRelaxation/src/X86LINUX64/.Depend
index 21cf078..f93fe67 100644 (file)
--- a/src/Tools/mrcImage/mrcImageNoiseReductionByRelaxation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNoiseReductionByRelaxation/src/X86LINUX64/.Depend
@@ -95,6 +95,7 @@ mrcImageNoiseReductionByRelaxation.o: \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/lmrcImageSigmaCalculate.h \
  /home/people/tacyas/Eos/include/mrcImage.h \

diff --git a/src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86LINUX64/.Depend
index aa5749d..c4441b1 100644 (file)
--- a/src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86LINUX64/.Depend
@@ -93,6 +93,7 @@ mrcImageNormalizedSubtraction.o: mrcImageNormalizedSubtraction.c \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageSubtractionCalc.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/lmrcImageDensityNormalizationByImage.h \

diff --git a/src/Tools/mrcImage/mrcImageNormalizing/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageNormalizing/src/X86LINUX64/.Depend
index 53d9f42..c84ac87 100644 (file)
--- a/src/Tools/mrcImage/mrcImageNormalizing/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNormalizing/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNormalizing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNormalizing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageNormalizing.o: mrcImageNormalizing.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImageNormalizing.o: mrcImageNormalizing.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNormalizing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageNormalizing.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/nr2.h \
@@ -98,14 +102,15 @@ mrcImageNormalizing.o: mrcImageNormalizing.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageNullImageCreate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageNullImageCreate/src/X86LINUX64/.Depend
index 1f5b03b..ac4785d 100644 (file)
--- a/src/Tools/mrcImage/mrcImageNullImageCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNullImageCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNullImageCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNullImageCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageNullImageCreate.o: mrcImageNullImageCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageNullImageCreate.o: mrcImageNullImageCreate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNullImageCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageOddBoxel/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageOddBoxel/src/X86LINUX64/.Depend
index 9814514..17bd75d 100644 (file)
--- a/src/Tools/mrcImage/mrcImageOddBoxel/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageOddBoxel/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOddBoxel.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOddBoxel.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageOddBoxel.o: mrcImageOddBoxel.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImageOddBoxel.o: mrcImageOddBoxel.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOddBoxel.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/nr2.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/lmrcImageMultiplying.h \
@@ -98,14 +102,15 @@ mrcImageOddBoxel.o: mrcImageOddBoxel.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageOneLineSimilarityCalc/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageOneLineSimilarityCalc/src/X86LINUX64/.Depend
index b705121..8e630ad 100644 (file)
--- a/src/Tools/mrcImage/mrcImageOneLineSimilarityCalc/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageOneLineSimilarityCalc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOneLineSimilarityCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOneLineSimilarityCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageOneLineSimilarityCalc.o: mrcImageOneLineSimilarityCalc.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageOneLineSimilarityCalc.o: mrcImageOneLineSimilarityCalc.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOneLineSimilarityCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageOneLineSimilarityCalc.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageOpening/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageOpening/src/X86LINUX64/.Depend
index 9aefafa..1b94050 100644 (file)
--- a/src/Tools/mrcImage/mrcImageOpening/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageOpening/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOpening.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOpening.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageOpening.o: mrcImageOpening.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageOpening.o: mrcImageOpening.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOpening.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageMorphology.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImagePCA/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImagePCA/src/X86LINUX64/.Depend
index 634c718..367d52a 100644 (file)
--- a/src/Tools/mrcImage/mrcImagePCA/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePCA/src/X86LINUX64/.Depend
@@ -206,3 +206,39 @@ mrcImagePCA.o: mrcImagePCA.cc /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h ../inc/mrcImagePCA.h
+mrcImagePCA.o: mrcImagePCA.cc /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/File.h \
+ ../inc/config.h ../inc/../inc/mrcImagePCA.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/include/Memory.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h ../inc/mrcImagePCA.h

diff --git a/src/Tools/mrcImage/mrcImagePad/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImagePad/src/X86LINUX64/.Depend
index c97b9e3..6fbb495 100755 (executable)
--- a/src/Tools/mrcImage/mrcImagePad/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePad/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePad.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePad.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrcImagePad.o: mrcImagePad.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,17 +82,18 @@ mrcImagePad.o: mrcImagePad.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePad.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/lmrcImagePad.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -97,14 +101,15 @@ mrcImagePad.o: mrcImagePad.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageParticleCandidateExtract/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageParticleCandidateExtract/src/X86LINUX64/.Depend
index 0f213a6..d5cca0b 100644 (file)
--- a/src/Tools/mrcImage/mrcImageParticleCandidateExtract/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageParticleCandidateExtract/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageParticleCandidateExtract.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageParticleCandidateExtract.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageParticleCandidateExtract.o: mrcImageParticleCandidateExtract.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageParticleCandidateExtract.o: mrcImageParticleCandidateExtract.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageParticleCandidateExtract.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImagePeakSearch/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImagePeakSearch/src/X86LINUX64/.Depend
index ac338a4..dd232d1 100755 (executable)
--- a/src/Tools/mrcImage/mrcImagePeakSearch/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePeakSearch/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePeakSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePeakSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImagePeakSearch.o: mrcImagePeakSearch.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,31 +83,33 @@ mrcImagePeakSearch.o: mrcImagePeakSearch.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePeakSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageBinarization.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/lmrcImageCalcArea.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImagePhaseCTFCompensationFromCTFINFO/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImagePhaseCTFCompensationFromCTFINFO/src/X86LINUX64/.Depend
index 1f0abe5..e4dfcbd 100644 (file)
--- a/src/Tools/mrcImage/mrcImagePhaseCTFCompensationFromCTFINFO/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePhaseCTFCompensationFromCTFINFO/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePhaseCTFCompensationFromCTFINFO.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePhaseCTFCompensationFromCTFINFO.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ mrcImagePhaseCTFCompensationFromCTFINFO.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,28 +84,30 @@ mrcImagePhaseCTFCompensationFromCTFINFO.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePhaseCTFCompensationFromCTFINFO.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImagePixelDataGet/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImagePixelDataGet/src/X86LINUX64/.Depend
index 9643435..e928215 100644 (file)
--- a/src/Tools/mrcImage/mrcImagePixelDataGet/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePixelDataGet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePixelDataGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePixelDataGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImagePixelDataGet.o: mrcImagePixelDataGet.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImagePixelDataGet.o: mrcImagePixelDataGet.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePixelDataGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImagePolyROI/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImagePolyROI/src/X86LINUX64/.Depend
index 22e1061..c1fb6ed 100644 (file)
--- a/src/Tools/mrcImage/mrcImagePolyROI/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePolyROI/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePolyROI.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePolyROI.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImagePolyROI.o: mrcImagePolyROI.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImagePolyROI.o: mrcImagePolyROI.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePolyROI.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImagePosterization/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImagePosterization/src/X86LINUX64/.Depend
index 0d6b4fb..ba202fe 100644 (file)
--- a/src/Tools/mrcImage/mrcImagePosterization/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePosterization/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePosterization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePosterization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImagePosterization.o: mrcImagePosterization.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -82,28 +85,30 @@ mrcImagePosterization.o: mrcImagePosterization.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/lmrcImagePosterization.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImagePrint/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImagePrint/src/X86LINUX64/.Depend
index b0017e4..219c14a 100644 (file)
--- a/src/Tools/mrcImage/mrcImagePrint/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePrint/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePrint.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePrint.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImagePrint.o: mrcImagePrint.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,15 +84,16 @@ mrcImagePrint.o: mrcImagePrint.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/lmrcImagePrint.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/psFile.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/genUtil.h \
@@ -97,14 +101,15 @@ mrcImagePrint.o: mrcImagePrint.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImagePrint3D/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImagePrint3D/src/X86LINUX64/.Depend
index 9f17d50..8062104 100644 (file)
--- a/src/Tools/mrcImage/mrcImagePrint3D/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePrint3D/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePrint3D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagePrint3D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImagePrint3D.o: mrcImagePrint3D.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -82,14 +85,15 @@ mrcImagePrint3D.o: mrcImagePrint3D.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -97,14 +101,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageProjection/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageProjection/src/X86LINUX64/.Depend
index ba126f0..84613a8 100644 (file)
--- a/src/Tools/mrcImage/mrcImageProjection/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageProjection/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageProjection.o: mrcImageProjection.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,28 +84,30 @@ mrcImageProjection.o: mrcImageProjection.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageProjection.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageProjection.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageROI/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageROI/src/X86LINUX64/.Depend
index fdff07b..f9b334a 100644 (file)
--- a/src/Tools/mrcImage/mrcImageROI/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageROI/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageROI.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageROI.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrcImageROI.o: mrcImageROI.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,30 +82,32 @@ mrcImageROI.o: mrcImageROI.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageROI.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageROI2D.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageROI3D/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageROI3D/src/X86LINUX64/.Depend
index 6061da9..2f35836 100644 (file)
--- a/src/Tools/mrcImage/mrcImageROI3D/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageROI3D/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageROI3D.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageROI3D.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageROI3D.o: mrcImageROI3D.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,27 +84,29 @@ mrcImageROI3D.o: mrcImageROI3D.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageROI3D.h \
  /home/people/tacyas/Eos/include/lmrcImageROI3D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageROIs/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageROIs/src/X86LINUX64/.Depend
index e50559c..0394c19 100644 (file)
--- a/src/Tools/mrcImage/mrcImageROIs/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageROIs/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageROIs.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageROIs.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageROIs.o: mrcImageROIs.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ mrcImageROIs.o: mrcImageROIs.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageROIs.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/String.h \
@@ -94,6 +97,7 @@ mrcImageROIs.o: mrcImageROIs.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageROI2D.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/lmrcImageMontage.h \
@@ -102,14 +106,15 @@ mrcImageROIs.o: mrcImageROIs.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -117,14 +122,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageROItoPCAoutputImage/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageROItoPCAoutputImage/src/X86LINUX64/.Depend
index 1d8a75a..cb82358 100644 (file)
--- a/src/Tools/mrcImage/mrcImageROItoPCAoutputImage/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageROItoPCAoutputImage/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageROItoPCAoutputImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageROItoPCAoutputImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageROItoPCAoutputImage.o: mrcImageROItoPCAoutputImage.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageROItoPCAoutputImage.o: mrcImageROItoPCAoutputImage.c \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/File.h \
  ../inc/config.h ../inc/../inc/mrcImageROItoPCAoutputImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  ../inc/mrcImageROItoPCAoutputImage.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageRadialDistribution/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageRadialDistribution/src/X86LINUX64/.Depend
index b5df50a..d5964ef 100644 (file)
--- a/src/Tools/mrcImage/mrcImageRadialDistribution/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRadialDistribution/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRadialDistribution.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRadialDistribution.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageRadialDistribution.o: mrcImageRadialDistribution.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImageRadialDistribution.o: mrcImageRadialDistribution.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRadialDistribution.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageRadialDistribution.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/lmrcImageDensityInverse.h \
@@ -101,14 +105,15 @@ mrcImageRadialDistribution.o: mrcImageRadialDistribution.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -116,14 +121,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageRealValueAdd/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageRealValueAdd/src/X86LINUX64/.Depend
index 4ca74f1..b471f8c 100644 (file)
--- a/src/Tools/mrcImage/mrcImageRealValueAdd/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRealValueAdd/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRealValueAdd.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRealValueAdd.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageRealValueAdd.o: mrcImageRealValueAdd.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageRealValueAdd.o: mrcImageRealValueAdd.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRealValueAdd.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageRectangleGet/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageRectangleGet/src/X86LINUX64/.Depend
index 3bf91b2..42e8448 100644 (file)
--- a/src/Tools/mrcImage/mrcImageRectangleGet/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRectangleGet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRectangleGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRectangleGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageRectangleGet.o: mrcImageRectangleGet.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageRectangleGet.o: mrcImageRectangleGet.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRectangleGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageRectangleGetByCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageRectangleGetByCorrelation/src/X86LINUX64/.Depend
index 5bb03c1..9a9bba7 100644 (file)
--- a/src/Tools/mrcImage/mrcImageRectangleGetByCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRectangleGetByCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRectangleGetByCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRectangleGetByCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageRectangleGetByCorrelation.o: mrcImageRectangleGetByCorrelation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageRectangleGetByCorrelation.o: mrcImageRectangleGetByCorrelation.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRectangleGetByCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageRefConv2D/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageRefConv2D/src/X86LINUX64/.Depend
index 7aca6ab..a2aba8f 100644 (file)
--- a/src/Tools/mrcImage/mrcImageRefConv2D/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRefConv2D/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRefConv2D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRefConv2D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageRefConv2D.o: mrcImageRefConv2D.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageRefConv2D.o: mrcImageRefConv2D.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRefConv2D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageRefCreate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageRefCreate/src/X86LINUX64/.Depend
index f6c2bb7..bada377 100644 (file)
--- a/src/Tools/mrcImage/mrcImageRefCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRefCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRefCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRefCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageRefCreate.o: mrcImageRefCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageRefCreate.o: mrcImageRefCreate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRefCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageRefFFTConv2D/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageRefFFTConv2D/src/X86LINUX64/.Depend
index 2b54db6..872c957 100644 (file)
--- a/src/Tools/mrcImage/mrcImageRefFFTConv2D/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRefFFTConv2D/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRefFFTConv2D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRefFFTConv2D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageRefFFTConv2D.o: mrcImageRefFFTConv2D.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageRefFFTConv2D.o: mrcImageRefFFTConv2D.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRefFFTConv2D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageRefScaleChangeWithPad/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageRefScaleChangeWithPad/src/X86LINUX64/.Depend
index bc51f41..7c7add2 100644 (file)
--- a/src/Tools/mrcImage/mrcImageRefScaleChangeWithPad/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRefScaleChangeWithPad/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRefScaleChangeWithPad.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRefScaleChangeWithPad.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageRefScaleChangeWithPad.o: mrcImageRefScaleChangeWithPad.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageRefScaleChangeWithPad.o: mrcImageRefScaleChangeWithPad.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRefScaleChangeWithPad.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/X86LINUX64/.Depend
index d48f8f3..cc69fb7 100644 (file)
--- a/src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageResolutionEstimateForFilaments.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageResolutionEstimateForFilaments.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ mrcImageResolutionEstimateForFilaments.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,28 +84,30 @@ mrcImageResolutionEstimateForFilaments.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageResolutionEstimateForFilaments.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageReverse/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageReverse/src/X86LINUX64/.Depend
index 337c2a7..74422ee 100644 (file)
--- a/src/Tools/mrcImage/mrcImageReverse/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageReverse/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageReverse.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageReverse.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageReverse.o: mrcImageReverse.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +84,28 @@ mrcImageReverse.o: mrcImageReverse.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageReverse.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageRotation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageRotation/src/X86LINUX64/.Depend
index 9cd7694..a596754 100644 (file)
--- a/src/Tools/mrcImage/mrcImageRotation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRotation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRotation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRotation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageRotation.o: mrcImageRotation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageRotation.o: mrcImageRotation.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRotation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageRotation3D/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageRotation3D/src/X86LINUX64/.Depend
index 3a0e5df..f22b103 100644 (file)
--- a/src/Tools/mrcImage/mrcImageRotation3D/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRotation3D/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRotation3D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRotation3D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageRotation3D.o: mrcImageRotation3D.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageRotation3D.o: mrcImageRotation3D.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRotation3D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSN/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSN/src/X86LINUX64/.Depend
index 9765cae..d05de73 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSN/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSN/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrcImageSN.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrcImageSN.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrcImageSN.o: mrcImageSN.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,29 +79,31 @@ mrcImageSN.o: mrcImageSN.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrcImageSN.h \
  /home/people/tacyas/Eos/include/Memory.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /home/people/tacyas/Eos/include/lmrcImagesStatDataGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -106,14 +111,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSamplingUnitChange/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSamplingUnitChange/src/X86LINUX64/.Depend
index 4a8ff79..043a178 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSamplingUnitChange/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSamplingUnitChange/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSamplingUnitChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSamplingUnitChange.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSamplingUnitChange.o: mrcImageSamplingUnitChange.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,28 +84,30 @@ mrcImageSamplingUnitChange.o: mrcImageSamplingUnitChange.c \
  ../inc/../inc/mrcImageSamplingUnitChange.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageSamplingUnitChange.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageScalarAdd/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageScalarAdd/src/X86LINUX64/.Depend
index 7735fa1..5157fe7 100644 (file)
--- a/src/Tools/mrcImage/mrcImageScalarAdd/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageScalarAdd/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageScalarAdd.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageScalarAdd.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageScalarAdd.o: mrcImageScalarAdd.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageScalarAdd.o: mrcImageScalarAdd.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageScalarAdd.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSectionGet/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSectionGet/src/X86LINUX64/.Depend
index 5c58a65..25b6221 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSectionGet/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSectionGet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSectionGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSectionGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSectionGet.o: mrcImageSectionGet.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +84,28 @@ mrcImageSectionGet.o: mrcImageSectionGet.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageSectionGet.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSetFunction/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSetFunction/src/X86LINUX64/.Depend
index 3766bba..f737a40 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSetFunction/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSetFunction/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSetFunction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSetFunction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSetFunction.o: mrcImageSetFunction.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageSetFunction.o: mrcImageSetFunction.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSetFunction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageShapePCA/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageShapePCA/src/X86LINUX64/.Depend
index 712e73b..3273152 100644 (file)
--- a/src/Tools/mrcImage/mrcImageShapePCA/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageShapePCA/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageShapePCA.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageShapePCA.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageShapePCA.o: mrcImageShapePCA.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,33 @@ mrcImageShapePCA.o: mrcImageShapePCA.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageShapePCA.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/lmrcImageShapePCA.h \
+ /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageShapePCAFit/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageShapePCAFit/src/X86LINUX64/.Depend
new file mode 100644 (file)
index 0000000..41d8df6
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageShapePCAFit/src/X86LINUX64/.Depend
@@ -0,0 +1,131 @@
+argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImageShapePCAFit.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+init.o: init.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImageShapePCAFit.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+mrcImageShapePCAFit.o: mrcImageShapePCAFit.c /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImageShapePCAFit.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/lmrcImageShapePCA.h \
+ /home/people/tacyas/Eos/include/mrcImage.h
+usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/mrcImageShapePCAFit.h
+util.o: util.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/mrcImageShapePCAFit.h

diff --git a/src/Tools/mrcImage/mrcImageShift/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageShift/src/X86LINUX64/.Depend
index 943ec19..1e0c45c 100644 (file)
--- a/src/Tools/mrcImage/mrcImageShift/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageShift/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageShift.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageShift.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageShift.o: mrcImageShift.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageShift.o: mrcImageShift.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageShift.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageShiftFollowingGC/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageShiftFollowingGC/src/X86LINUX64/.Depend
index 21d5bae..f88b947 100644 (file)
--- a/src/Tools/mrcImage/mrcImageShiftFollowingGC/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageShiftFollowingGC/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageShiftFollowingGC.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageShiftFollowingGC.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageShiftFollowingGC.o: mrcImageShiftFollowingGC.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImageShiftFollowingGC.o: mrcImageShiftFollowingGC.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageShiftFollowingGC.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageDensity.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -99,14 +103,15 @@ mrcImageShiftFollowingGC.o: mrcImageShiftFollowingGC.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -114,14 +119,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageShrink/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageShrink/src/X86LINUX64/.Depend
index 5e374c6..facbdb4 100644 (file)
--- a/src/Tools/mrcImage/mrcImageShrink/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageShrink/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageShrink.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageShrink.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageShrink.o: mrcImageShrink.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +84,28 @@ mrcImageShrink.o: mrcImageShrink.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageShrink.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSiemensStar/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSiemensStar/src/X86LINUX64/.Depend
index 48f021d..7e82b20 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSiemensStar/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSiemensStar/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSiemensStar.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSiemensStar.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSiemensStar.o: mrcImageSiemensStar.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageSiemensStar.o: mrcImageSiemensStar.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSiemensStar.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSimilarImageSearch/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSimilarImageSearch/src/X86LINUX64/.Depend
index bcee3b4..cfebb32 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSimilarImageSearch/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSimilarImageSearch/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSimilarImageSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSimilarImageSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSimilarImageSearch.o: mrcImageSimilarImageSearch.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageSimilarImageSearch.o: mrcImageSimilarImageSearch.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSimilarImageSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSimilarityEstimate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSimilarityEstimate/src/X86LINUX64/.Depend
index f528849..f3da98a 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSimilarityEstimate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSimilarityEstimate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSimilarityEstimate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSimilarityEstimate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSimilarityEstimate.o: mrcImageSimilarityEstimate.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,18 +84,19 @@ mrcImageSimilarityEstimate.o: mrcImageSimilarityEstimate.c \
  ../inc/../inc/mrcImageSimilarityEstimate.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageCorrelation.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/PVM.h \
@@ -101,14 +105,15 @@ mrcImageSimilarityEstimate.o: mrcImageSimilarityEstimate.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -116,14 +121,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSinogramCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSinogramCorrelation/src/X86LINUX64/.Depend
index a132fa8..9013754 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSinogramCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSinogramCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSinogramCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSinogramCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSinogramCorrelation.o: mrcImageSinogramCorrelation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageSinogramCorrelation.o: mrcImageSinogramCorrelation.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSinogramCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageSinogram.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSinogramCreate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSinogramCreate/src/X86LINUX64/.Depend
index 1e4817b..a4b23eb 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSinogramCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSinogramCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSinogramCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSinogramCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSinogramCreate.o: mrcImageSinogramCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageSinogramCreate.o: mrcImageSinogramCreate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSinogramCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageSinogram.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSinogramFFT/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSinogramFFT/src/X86LINUX64/.Depend
index 2b2e49b..fef7719 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSinogramFFT/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSinogramFFT/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSinogramFFT.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSinogramFFT.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSinogramFFT.o: mrcImageSinogramFFT.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageSinogramFFT.o: mrcImageSinogramFFT.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSinogramFFT.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageSinogramFFT.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSmoothing/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSmoothing/src/X86LINUX64/.Depend
index 8799d88..b21f500 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSmoothing/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSmoothing/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSmoothing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSmoothing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSmoothing.o: mrcImageSmoothing.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,27 +84,29 @@ mrcImageSmoothing.o: mrcImageSmoothing.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageSmoothing.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/genUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSolventFlattening/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSolventFlattening/src/X86LINUX64/.Depend
index 02dc6fb..6732328 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSolventFlattening/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSolventFlattening/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSolventFlattening.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSolventFlattening.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSolventFlattening.o: mrcImageSolventFlattening.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,27 +84,29 @@ mrcImageSolventFlattening.o: mrcImageSolventFlattening.c \
  ../inc/../inc/mrcImageSolventFlattening.h \
  /home/people/tacyas/Eos/include/lmrcImageSolventFlattening.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSphere/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSphere/src/X86LINUX64/.Depend
index 35a1213..e4debcf 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSphere/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSphere/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSphere.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSphere.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSphere.o: mrcImageSphere.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageSphere.o: mrcImageSphere.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSphere.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageSphere.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSphereCheck/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSphereCheck/src/X86LINUX64/.Depend
index e7f96d5..a4107b3 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSphereCheck/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSphereCheck/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSphereCheck.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSphereCheck.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSphereCheck.o: mrcImageSphereCheck.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageSphereCheck.o: mrcImageSphereCheck.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSphereCheck.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSplit/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSplit/src/X86LINUX64/.Depend
index 623dfad..aba1c78 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSplit/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSplit/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSplit.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSplit.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSplit.o: mrcImageSplit.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageSplit.o: mrcImageSplit.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSplit.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageSplit.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSquare/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSquare/src/X86LINUX64/.Depend
index ef61e27..b0eacef 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSquare/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSquare/src/X86LINUX64/.Depend
@@ -93,7 +93,8 @@ mrcImageSquare.o: mrcImageSquare.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \

diff --git a/src/Tools/mrcImage/mrcImageStack/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageStack/src/X86LINUX64/.Depend
index 4bdb759..e3c67b0 100644 (file)
--- a/src/Tools/mrcImage/mrcImageStack/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageStack/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageStack.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageStack.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageStack.o: mrcImageStack.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageStack.o: mrcImageStack.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageStack.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageStandardDeviation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageStandardDeviation/src/X86LINUX64/.Depend
index 07dfa78..6cec1af 100644 (file)
--- a/src/Tools/mrcImage/mrcImageStandardDeviation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageStandardDeviation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageStandardDeviation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageStandardDeviation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageStandardDeviation.o: mrcImageStandardDeviation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageStandardDeviation.o: mrcImageStandardDeviation.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageStandardDeviation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSubtraction/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSubtraction/src/X86LINUX64/.Depend
index 2037ae1..2f16ae6 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSubtraction/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSubtraction/src/X86LINUX64/.Depend
@@ -94,6 +94,7 @@ mrcImageSubtraction.o: mrcImageSubtraction.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \

diff --git a/src/Tools/mrcImage/mrcImageSuperResolution/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSuperResolution/src/X86LINUX64/.Depend
index c1f77f7..e3e2bc0 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSuperResolution/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSuperResolution/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSuperResolution.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSuperResolution.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSuperResolution.o: mrcImageSuperResolution.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImageSuperResolution.o: mrcImageSuperResolution.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSuperResolution.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/nr2.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/lmrcImageSubtractionCalc.h \
@@ -98,14 +102,15 @@ mrcImageSuperResolution.o: mrcImageSuperResolution.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSymmetryAverage/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSymmetryAverage/src/X86LINUX64/.Depend
index f0469c4..3182246 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSymmetryAverage/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSymmetryAverage/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSymmetryAverage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSymmetryAverage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSymmetryAverage.o: mrcImageSymmetryAverage.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImageSymmetryAverage.o: mrcImageSymmetryAverage.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSymmetryAverage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/lDescartesIntoPolar.h \
  /home/people/tacyas/Eos/include/lmrcImageSymmetryFind.h \
@@ -103,14 +107,15 @@ mrcImageSymmetryAverage.o: mrcImageSymmetryAverage.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -118,14 +123,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/X86LINUX64/.Depend
index c6dfe56..5b8a7c7 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSymmetryCentreFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSymmetryCentreFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSymmetryCentreFind.o: mrcImageSymmetryCentreFind.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImageSymmetryCentreFind.o: mrcImageSymmetryCentreFind.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSymmetryCentreFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageSymmetryFind.h \
  /home/people/tacyas/Eos/include/lDescartesIntoPolar.h \
  /home/people/tacyas/Eos/include/lmrcImageTransformDescartesIntoPolar.h \
@@ -98,14 +102,15 @@ mrcImageSymmetryCentreFind.o: mrcImageSymmetryCentreFind.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageSymmetryFind/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageSymmetryFind/src/X86LINUX64/.Depend
index 6ed5467..e752e97 100644 (file)
--- a/src/Tools/mrcImage/mrcImageSymmetryFind/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSymmetryFind/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSymmetryFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSymmetryFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageSymmetryFind.o: mrcImageSymmetryFind.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,18 +83,19 @@ mrcImageSymmetryFind.o: mrcImageSymmetryFind.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageSymmetryFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/lmrcImageSymmetryFind.h \
  /home/people/tacyas/Eos/include/lDescartesIntoPolar.h \
@@ -100,14 +104,15 @@ mrcImageSymmetryFind.o: mrcImageSymmetryFind.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -115,14 +120,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageTfunction/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageTfunction/src/X86LINUX64/.Depend
index 844923a..2a9afd7 100644 (file)
--- a/src/Tools/mrcImage/mrcImageTfunction/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTfunction/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTfunction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTfunction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageTfunction.o: mrcImageTfunction.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +84,28 @@ mrcImageTfunction.o: mrcImageTfunction.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageTfunction.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageTiltAxisSearch/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageTiltAxisSearch/src/X86LINUX64/.Depend
index 5c92b50..5326568 100644 (file)
--- a/src/Tools/mrcImage/mrcImageTiltAxisSearch/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTiltAxisSearch/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTiltAxisSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTiltAxisSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageTiltAxisSearch.o: mrcImageTiltAxisSearch.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,31 +83,33 @@ mrcImageTiltAxisSearch.o: mrcImageTiltAxisSearch.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTiltAxisSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/Vector.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageTiltAxisSearchHelp/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageTiltAxisSearchHelp/src/X86LINUX64/.Depend
index e155d1f..1312295 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageTiltAxisSearchHelp/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTiltAxisSearchHelp/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTiltAxisSearchHelp.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTiltAxisSearchHelp.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageTiltAxisSearchHelp.o: mrcImageTiltAxisSearchHelp.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageTiltAxisSearchHelp.o: mrcImageTiltAxisSearchHelp.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTiltAxisSearchHelp.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageToNAMDConstantForces/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageToNAMDConstantForces/src/X86LINUX64/.Depend
index 876aa18..4411d63 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageToNAMDConstantForces/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageToNAMDConstantForces/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageToNAMDConstantForces.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageToNAMDConstantForces.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageToNAMDConstantForces.o: mrcImageToNAMDConstantForces.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,31 +83,33 @@ mrcImageToNAMDConstantForces.o: mrcImageToNAMDConstantForces.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageToNAMDConstantForces.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/Random.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageToPointsSet/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageToPointsSet/src/X86LINUX64/.Depend
index 4763445..462d899 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageToPointsSet/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageToPointsSet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageToPointsSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageToPointsSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageToPointsSet.o: mrcImageToPointsSet.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,32 @@ mrcImageToPointsSet.o: mrcImageToPointsSet.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageToPointsSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/lmrcImageBinarization.h \
+ /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageTrans/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageTrans/src/X86LINUX64/.Depend
index 759e141..002a1b5 100644 (file)
--- a/src/Tools/mrcImage/mrcImageTrans/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTrans/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTrans.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTrans.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageTrans.o: mrcImageTrans.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcImageTrans.o: mrcImageTrans.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTrans.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageMove.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageTransformDescartesIntoPolar/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageTransformDescartesIntoPolar/src/X86LINUX64/.Depend
index 61aa4ae..03515e4 100644 (file)
--- a/src/Tools/mrcImage/mrcImageTransformDescartesIntoPolar/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTransformDescartesIntoPolar/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTransformDescartesIntoPolar.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTransformDescartesIntoPolar.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ mrcImageTransformDescartesIntoPolar.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,17 +84,18 @@ mrcImageTransformDescartesIntoPolar.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTransformDescartesIntoPolar.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageSymmetryFind.h \
  /home/people/tacyas/Eos/include/lDescartesIntoPolar.h \
  /home/people/tacyas/Eos/include/lmrcImageTransformDescartesIntoPolar.h \
@@ -101,14 +105,15 @@ mrcImageTransformDescartesIntoPolar.o: \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -116,14 +121,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageTransformSign/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageTransformSign/src/X86LINUX64/.Depend
index f3e5bad..433ccd1 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageTransformSign/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTransformSign/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTransformSign.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTransformSign.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageTransformSign.o: mrcImageTransformSign.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageTransformSign.o: mrcImageTransformSign.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTransformSign.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageTranspose/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageTranspose/src/X86LINUX64/.Depend
index cebd302..fa9b1f9 100644 (file)
--- a/src/Tools/mrcImage/mrcImageTranspose/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTranspose/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTranspose.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTranspose.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageTranspose.o: mrcImageTranspose.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageTranspose.o: mrcImageTranspose.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageTranspose.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageUnbentROI/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageUnbentROI/src/X86LINUX64/.Depend
index 91474de..2d6830d 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageUnbentROI/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageUnbentROI/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageUnbentROI.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageUnbentROI.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageUnbentROI.o: mrcImageUnbentROI.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageUnbentROI.o: mrcImageUnbentROI.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageUnbentROI.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageUnexpectedMassFromPDB/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageUnexpectedMassFromPDB/src/X86LINUX64/.Depend
index 0b79c81..7dbeb7a 100644 (file)
--- a/src/Tools/mrcImage/mrcImageUnexpectedMassFromPDB/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageUnexpectedMassFromPDB/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageUnexpectedMassFromPDB.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageUnexpectedMassFromPDB.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageUnexpectedMassFromPDB.o: mrcImageUnexpectedMassFromPDB.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,28 +84,30 @@ mrcImageUnexpectedMassFromPDB.o: mrcImageUnexpectedMassFromPDB.c \
  ../inc/../inc/mrcImageUnexpectedMassFromPDB.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageUntwist/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageUntwist/src/X86LINUX64/.Depend
index b811419..178dab9 100644 (file)
--- a/src/Tools/mrcImage/mrcImageUntwist/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageUntwist/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageUntwist.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageUntwist.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageUntwist.o: mrcImageUntwist.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageUntwist.o: mrcImageUntwist.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageUntwist.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageVarianceAnalysis/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageVarianceAnalysis/src/X86LINUX64/.Depend
index 08b4517..b390f26 100644 (file)
--- a/src/Tools/mrcImage/mrcImageVarianceAnalysis/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageVarianceAnalysis/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageVarianceAnalysis.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageVarianceAnalysis.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageVarianceAnalysis.o: mrcImageVarianceAnalysis.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ mrcImageVarianceAnalysis.o: mrcImageVarianceAnalysis.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageVarianceAnalysis.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/Memory.h \
@@ -94,20 +97,22 @@ mrcImageVarianceAnalysis.o: mrcImageVarianceAnalysis.c \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImagesStatDataGet.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/lmrcImageMultiplying.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -115,14 +120,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageVarianceMap/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageVarianceMap/src/X86LINUX64/.Depend
index ddb0d36..d1af45b 100644 (file)
--- a/src/Tools/mrcImage/mrcImageVarianceMap/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageVarianceMap/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageVarianceMap.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageVarianceMap.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageVarianceMap.o: mrcImageVarianceMap.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,32 +83,34 @@ mrcImageVarianceMap.o: mrcImageVarianceMap.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageVarianceMap.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImagesStatDataGet.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/lmrcImageMultiplying.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageVolumeCalc/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageVolumeCalc/src/X86LINUX64/.Depend
index 9da1b36..3284be5 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageVolumeCalc/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageVolumeCalc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageVolumeCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageVolumeCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageVolumeCalc.o: mrcImageVolumeCalc.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,32 +83,34 @@ mrcImageVolumeCalc.o: mrcImageVolumeCalc.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageVolumeCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/nr2.h \
  /home/people/tacyas/Eos/include/lmrcImageVolumeCalc.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageWindowing/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageWindowing/src/X86LINUX64/.Depend
index 5efeecd..438dd43 100644 (file)
--- a/src/Tools/mrcImage/mrcImageWindowing/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageWindowing/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageWindowing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageWindowing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageWindowing.o: mrcImageWindowing.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,27 +84,29 @@ mrcImageWindowing.o: mrcImageWindowing.c /usr/include/stdio.h \
  ../inc/../inc/mrcImageWindowing.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcImageWindowing.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImageZPad/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImageZPad/src/X86LINUX64/.Depend
index 08734aa..7a59a31 100644 (file)
--- a/src/Tools/mrcImage/mrcImageZPad/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImageZPad/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageZPad.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageZPad.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImage3DPad2.o: mrcImage3DPad2.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImage3DPad2.o: mrcImage3DPad2.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageZPad.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 mrcImageZPad.o: mrcImageZPad.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -113,28 +118,30 @@ mrcImageZPad.o: mrcImageZPad.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageZPad.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -142,14 +149,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImagepdbFileReduce/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImagepdbFileReduce/src/X86LINUX64/.Depend
index 10d6ea9..bc93afa 100644 (file)
--- a/src/Tools/mrcImage/mrcImagepdbFileReduce/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImagepdbFileReduce/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagepdbFileReduce.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagepdbFileReduce.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImagepdbFileReduce.o: mrcImagepdbFileReduce.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImagepdbFileReduce.o: mrcImagepdbFileReduce.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagepdbFileReduce.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/pdbInfoGet.h \
@@ -98,14 +102,15 @@ mrcImagepdbFileReduce.o: mrcImagepdbFileReduce.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImagesSinogramCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImagesSinogramCorrelation/src/X86LINUX64/.Depend
index 30dfff2..7221473 100644 (file)
--- a/src/Tools/mrcImage/mrcImagesSinogramCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImagesSinogramCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagesSinogramCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagesSinogramCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImagesSinogramCorrelation.o: mrcImagesSinogramCorrelation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,21 +82,22 @@ mrcImagesSinogramCorrelation.o: mrcImagesSinogramCorrelation.c \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /usr/include/sys/stat.h \
  /usr/include/bits/stat.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/confname.h \
- /usr/include/getopt.h ../inc/config.h \
+ /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
+ /usr/include/bits/confname.h /usr/include/getopt.h ../inc/config.h \
  ../inc/../inc/mrcImagesSinogramCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/lmrcImageFileListAndEulerAngleDataRead.h \
@@ -105,14 +109,15 @@ mrcImagesSinogramCorrelation.o: mrcImagesSinogramCorrelation.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -120,14 +125,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImagestoRef/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImagestoRef/src/X86LINUX64/.Depend
index dda5a9f..16b84fa 100644 (file)
--- a/src/Tools/mrcImage/mrcImagestoRef/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImagestoRef/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagestoRef.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImagestoRef.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImagestoRef.o: mrcImagestoRef.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,28 +84,30 @@ mrcImagestoRef.o: mrcImagestoRef.c /usr/include/stdio.h \
  ../inc/../inc/mrcImagestoRef.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcImateToPointsSet/src/X86LINUX64/.Depend
index f543671..51dcd6f 100755 (executable)
--- a/src/Tools/mrcImage/mrcImateToPointsSet/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcImateToPointsSet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImateToPointsSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImateToPointsSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImateToPointsSet.o: mrcImateToPointsSet.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImateToPointsSet.o: mrcImateToPointsSet.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImateToPointsSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcInfo/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcInfo/src/X86LINUX64/.Depend
index b799f59..f5aae05 100644 (file)
--- a/src/Tools/mrcImage/mrcInfo/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcInfo/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrcInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrcInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrcInfo.o: mrcInfo.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,28 +79,30 @@ mrcInfo.o: mrcInfo.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrcInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +110,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcInfoSet/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcInfoSet/src/X86LINUX64/.Depend
index 47d853f..b711828 100644 (file)
--- a/src/Tools/mrcImage/mrcInfoSet/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcInfoSet/src/X86LINUX64/.Depend
@@ -87,7 +87,8 @@ mrcInfoSet.o: mrcInfoSet.c /usr/include/stdio.h /usr/include/features.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h ../inc/config.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h ../inc/config.h \
  ../inc/../inc/mrcInfoSet.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \

diff --git a/src/Tools/mrcImage/mrcMask/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcMask/src/X86LINUX64/.Depend
index 1e6d277..c65a54d 100644 (file)
--- a/src/Tools/mrcImage/mrcMask/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcMask/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrcMask.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrcMask.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrcMask.o: mrcMask.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,29 +79,31 @@ mrcMask.o: mrcMask.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrcMask.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -106,14 +111,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcMeanYlinePos/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcMeanYlinePos/src/X86LINUX64/.Depend
index 628d894..fb3966e 100644 (file)
--- a/src/Tools/mrcImage/mrcMeanYlinePos/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcMeanYlinePos/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcMeanYlinePos.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcMeanYlinePos.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcMeanYlinePos.o: mrcMeanYlinePos.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +84,28 @@ mrcMeanYlinePos.o: mrcMeanYlinePos.c /usr/include/stdio.h \
  ../inc/../inc/mrcMeanYlinePos.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcMirrorImageCreate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcMirrorImageCreate/src/X86LINUX64/.Depend
index bd30804..f1d7b09 100644 (file)
--- a/src/Tools/mrcImage/mrcMirrorImageCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcMirrorImageCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcMirrorImageCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcMirrorImageCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcMirrorImageCreate.o: mrcMirrorImageCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcMirrorImageCreate.o: mrcMirrorImageCreate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcMirrorImageCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefCorEstimate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefCorEstimate/src/X86LINUX64/.Depend
index e01eb6e..210b2ef 100644 (file)
--- a/src/Tools/mrcImage/mrcRefCorEstimate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefCorEstimate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCorEstimate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCorEstimate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefCorEstimate.o: mrcRefCorEstimate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefCorEstimate.o: mrcRefCorEstimate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCorEstimate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefCorModify/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefCorModify/src/X86LINUX64/.Depend
index a61047e..44c9db2 100644 (file)
--- a/src/Tools/mrcImage/mrcRefCorModify/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefCorModify/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCorModify.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCorModify.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefCorModify.o: mrcRefCorModify.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefCorModify.o: mrcRefCorModify.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCorModify.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefCoreGet/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefCoreGet/src/X86LINUX64/.Depend
index 959aa05..f9798e2 100644 (file)
--- a/src/Tools/mrcImage/mrcRefCoreGet/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefCoreGet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCoreGet.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCoreGet.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefCoreGet.o: mrcRefCoreGet.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefCoreGet.o: mrcRefCoreGet.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCoreGet.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefCorrelation/src/X86LINUX64/.Depend
index a39cae7..01971aa 100644 (file)
--- a/src/Tools/mrcImage/mrcRefCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefCorrelation.o: mrcRefCorrelation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcRefCorrelation.o: mrcRefCorrelation.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Random.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefCorrelationConv/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefCorrelationConv/src/X86LINUX64/.Depend
index 3bf840f..1ec5d4f 100644 (file)
--- a/src/Tools/mrcImage/mrcRefCorrelationConv/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefCorrelationConv/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCorrelationConv.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCorrelationConv.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefCorrelationConv.o: mrcRefCorrelationConv.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefCorrelationConv.o: mrcRefCorrelationConv.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefCorrelationConv.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefEstimate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefEstimate/src/X86LINUX64/.Depend
index cebd52d..66af16a 100644 (file)
--- a/src/Tools/mrcImage/mrcRefEstimate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefEstimate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefEstimate.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefEstimate.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefEstimate.o: mrcRefEstimate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefEstimate.o: mrcRefEstimate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefEstimate.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefFFTConvert/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefFFTConvert/src/X86LINUX64/.Depend
index ef18506..b68ee14 100644 (file)
--- a/src/Tools/mrcImage/mrcRefFFTConvert/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefFFTConvert/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefFFTConvert.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefFFTConvert.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefFFTConvert.o: mrcRefFFTConvert.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcRefFFTConvert.o: mrcRefFFTConvert.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefFFTConvert.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefHeaderCreate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefHeaderCreate/src/X86LINUX64/.Depend
index 33cd688..09fe952 100644 (file)
--- a/src/Tools/mrcImage/mrcRefHeaderCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefHeaderCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefHeaderCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefHeaderCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefHeaderCreate.o: mrcRefHeaderCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefHeaderCreate.o: mrcRefHeaderCreate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefHeaderCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefHighPassFilter/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefHighPassFilter/src/X86LINUX64/.Depend
index 5f0ec9f..10df7f2 100644 (file)
--- a/src/Tools/mrcImage/mrcRefHighPassFilter/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefHighPassFilter/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefHighPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefHighPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefHighPassFilter.o: mrcRefHighPassFilter.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefHighPassFilter.o: mrcRefHighPassFilter.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefHighPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefImageCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefImageCorrelation/src/X86LINUX64/.Depend
index 8923cba..d6e8a44 100644 (file)
--- a/src/Tools/mrcImage/mrcRefImageCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImageCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImageCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImageCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefImageCorrelation.o: mrcRefImageCorrelation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefImageCorrelation.o: mrcRefImageCorrelation.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImageCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefImageOmegaCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefImageOmegaCorrelation/src/X86LINUX64/.Depend
index adb8543..ef0bad1 100644 (file)
--- a/src/Tools/mrcImage/mrcRefImageOmegaCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImageOmegaCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImageOmegaCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImageOmegaCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefImageOmegaCorrelation.o: mrcRefImageOmegaCorrelation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcRefImageOmegaCorrelation.o: mrcRefImageOmegaCorrelation.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImageOmegaCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefImagepwzCorEstimate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefImagepwzCorEstimate/src/X86LINUX64/.Depend
index e85d12d..da55692 100644 (file)
--- a/src/Tools/mrcImage/mrcRefImagepwzCorEstimate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImagepwzCorEstimate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorEstimate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorEstimate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefImagepwzCorEstimate.o: mrcRefImagepwzCorEstimate.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcRefImagepwzCorEstimate.o: mrcRefImagepwzCorEstimate.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorEstimate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/mrcImagefuncmin.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefImagepwzCorModify/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefImagepwzCorModify/src/X86LINUX64/.Depend
index 9023edb..893727b 100644 (file)
--- a/src/Tools/mrcImage/mrcRefImagepwzCorModify/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImagepwzCorModify/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorModify.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorModify.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefImagepwzCorModify.o: mrcRefImagepwzCorModify.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefImagepwzCorModify.o: mrcRefImagepwzCorModify.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorModify.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefImagepwzCorPeakFind/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefImagepwzCorPeakFind/src/X86LINUX64/.Depend
index 4209f86..6d3690a 100644 (file)
--- a/src/Tools/mrcImage/mrcRefImagepwzCorPeakFind/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImagepwzCorPeakFind/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorPeakFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorPeakFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefImagepwzCorPeakFind.o: mrcRefImagepwzCorPeakFind.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcRefImagepwzCorPeakFind.o: mrcRefImagepwzCorPeakFind.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorPeakFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/mrcImagefuncmin.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefImagepwzCorSmoothing/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefImagepwzCorSmoothing/src/X86LINUX64/.Depend
index 03e7792..a8fe36e 100644 (file)
--- a/src/Tools/mrcImage/mrcRefImagepwzCorSmoothing/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImagepwzCorSmoothing/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorSmoothing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorSmoothing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefImagepwzCorSmoothing.o: mrcRefImagepwzCorSmoothing.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefImagepwzCorSmoothing.o: mrcRefImagepwzCorSmoothing.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorSmoothing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefImagepwzCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefImagepwzCorrelation/src/X86LINUX64/.Depend
index b279e9d..e0e02b4 100644 (file)
--- a/src/Tools/mrcImage/mrcRefImagepwzCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImagepwzCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefImagepwzCorrelation.o: mrcRefImagepwzCorrelation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefImagepwzCorrelation.o: mrcRefImagepwzCorrelation.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefImagepwzCorrelationByFFT/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefImagepwzCorrelationByFFT/src/X86LINUX64/.Depend
index 8d59acd..288ada1 100644 (file)
--- a/src/Tools/mrcImage/mrcRefImagepwzCorrelationByFFT/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImagepwzCorrelationByFFT/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorrelationByFFT.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagepwzCorrelationByFFT.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefImagepwzCorrelationByFFT.o: mrcRefImagepwzCorrelationByFFT.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -82,14 +85,15 @@ mrcRefImagepwzCorrelationByFFT.o: mrcRefImagepwzCorrelationByFFT.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -97,14 +101,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefImagexaFit/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefImagexaFit/src/X86LINUX64/.Depend
index eedfba5..80eee55 100644 (file)
--- a/src/Tools/mrcImage/mrcRefImagexaFit/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImagexaFit/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagexaFit.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagexaFit.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefImagexaFit.o: mrcRefImagexaFit.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,31 +83,33 @@ mrcRefImagexaFit.o: mrcRefImagexaFit.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefImagexaFit.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/mrcImagefuncmin.h \
  /home/people/tacyas/Eos/include/nr2.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefLowPassFilter/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefLowPassFilter/src/X86LINUX64/.Depend
index 8c0e106..4ca7bdd 100644 (file)
--- a/src/Tools/mrcImage/mrcRefLowPassFilter/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefLowPassFilter/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefLowPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefLowPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefLowPassFilter.o: mrcRefLowPassFilter.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefLowPassFilter.o: mrcRefLowPassFilter.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefLowPassFilter.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefNoiseAdd/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefNoiseAdd/src/X86LINUX64/.Depend
index 67748ee..b23148f 100644 (file)
--- a/src/Tools/mrcImage/mrcRefNoiseAdd/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefNoiseAdd/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefNoiseAdd.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefNoiseAdd.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefNoiseAdd.o: mrcRefNoiseAdd.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcRefNoiseAdd.o: mrcRefNoiseAdd.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefNoiseAdd.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/Random.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefNormalizing/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefNormalizing/src/X86LINUX64/.Depend
index 8056769..4b898ed 100644 (file)
--- a/src/Tools/mrcImage/mrcRefNormalizing/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefNormalizing/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefNormalizing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefNormalizing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefNormalizing.o: mrcRefNormalizing.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefNormalizing.o: mrcRefNormalizing.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefNormalizing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefPhaseImageCreate/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefPhaseImageCreate/src/X86LINUX64/.Depend
index e9d1616..74ca31b 100644 (file)
--- a/src/Tools/mrcImage/mrcRefPhaseImageCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefPhaseImageCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefPhaseImageCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefPhaseImageCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefPhaseImageCreate.o: mrcRefPhaseImageCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefPhaseImageCreate.o: mrcRefPhaseImageCreate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefPhaseImageCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefSmoothing/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefSmoothing/src/X86LINUX64/.Depend
index afa4b09..a2e97d8 100644 (file)
--- a/src/Tools/mrcImage/mrcRefSmoothing/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefSmoothing/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefSmoothing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefSmoothing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefSmoothing.o: mrcRefSmoothing.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefSmoothing.o: mrcRefSmoothing.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefSmoothing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcRefz1ImageCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcRefz1ImageCorrelation/src/X86LINUX64/.Depend
index 66876d5..62e7e81 100644 (file)
--- a/src/Tools/mrcImage/mrcRefz1ImageCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcRefz1ImageCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefz1ImageCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefz1ImageCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRefz1ImageCorrelation.o: mrcRefz1ImageCorrelation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcRefz1ImageCorrelation.o: mrcRefz1ImageCorrelation.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRefz1ImageCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcSinogramFET/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcSinogramFET/src/X86LINUX64/.Depend
index e8b0135..79b576d 100644 (file)
--- a/src/Tools/mrcImage/mrcSinogramFET/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcSinogramFET/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFET.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFET.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcSinogramFET.o: mrcSinogramFET.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,31 +83,32 @@ mrcSinogramFET.o: mrcSinogramFET.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFET.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcSinogramFET.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/Array.h
+ /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcSinogramFETcalcSDforNormalize/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcSinogramFETcalcSDforNormalize/src/X86LINUX64/.Depend
index b9c8394..6d55b0a 100644 (file)
--- a/src/Tools/mrcImage/mrcSinogramFETcalcSDforNormalize/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcSinogramFETcalcSDforNormalize/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETcalcSDforNormalize.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETcalcSDforNormalize.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcSinogramFETcalcSDforNormalize.o: mrcSinogramFETcalcSDforNormalize.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcSinogramFETcalcSDforNormalize.o: mrcSinogramFETcalcSDforNormalize.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETcalcSDforNormalize.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcSinogramFETcalcWeight/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcSinogramFETcalcWeight/src/X86LINUX64/.Depend
index 736a7ac..d766111 100644 (file)
--- a/src/Tools/mrcImage/mrcSinogramFETcalcWeight/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcSinogramFETcalcWeight/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETcalcWeight.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETcalcWeight.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcSinogramFETcalcWeight.o: mrcSinogramFETcalcWeight.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,32 +83,33 @@ mrcSinogramFETcalcWeight.o: mrcSinogramFETcalcWeight.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETcalcWeight.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcSinogramFETcalcWeight.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/lmrcSinogramFET.h \
- /home/people/tacyas/Eos/include/Array.h
+ /home/people/tacyas/Eos/include/lmrcSinogramFET.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcSinogramFETcorrelationMap/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcSinogramFETcorrelationMap/src/X86LINUX64/.Depend
index 7e2f558..e2a48b4 100644 (file)
--- a/src/Tools/mrcImage/mrcSinogramFETcorrelationMap/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcSinogramFETcorrelationMap/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETcorrelationMap.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETcorrelationMap.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcSinogramFETcorrelationMap.o: mrcSinogramFETcorrelationMap.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcSinogramFETcorrelationMap.o: mrcSinogramFETcorrelationMap.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETcorrelationMap.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcSinogramFETcorrelationMap.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcSinogramFETnormalizedMap/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcSinogramFETnormalizedMap/src/X86LINUX64/.Depend
index a414445..5d68246 100644 (file)
--- a/src/Tools/mrcImage/mrcSinogramFETnormalizedMap/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcSinogramFETnormalizedMap/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETnormalizedMap.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETnormalizedMap.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcSinogramFETnormalizedMap.o: mrcSinogramFETnormalizedMap.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ mrcSinogramFETnormalizedMap.o: mrcSinogramFETnormalizedMap.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETnormalizedMap.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcSinogramFETnormalizedMap.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcSinogramFETreferredCorrelation/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcSinogramFETreferredCorrelation/src/X86LINUX64/.Depend
index 2c0def5..820c06b 100644 (file)
--- a/src/Tools/mrcImage/mrcSinogramFETreferredCorrelation/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcSinogramFETreferredCorrelation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETreferredCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETreferredCorrelation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcSinogramFETreferredCorrelation.o: mrcSinogramFETreferredCorrelation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -82,28 +85,30 @@ mrcSinogramFETreferredCorrelation.o: mrcSinogramFETreferredCorrelation.c \
  /home/people/tacyas/Eos/include/lmrcSinogramFETreferredCorrelation.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcSinogramFETsmoothParameterMatching/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcSinogramFETsmoothParameterMatching/src/X86LINUX64/.Depend
index 7f105e9..e1b0b05 100644 (file)
--- a/src/Tools/mrcImage/mrcSinogramFETsmoothParameterMatching/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcSinogramFETsmoothParameterMatching/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETsmoothParameterMatching.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETsmoothParameterMatching.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ mrcSinogramFETsmoothParameterMatching.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,30 +84,32 @@ mrcSinogramFETsmoothParameterMatching.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcSinogramFETsmoothParameterMatching.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcSinogramFETsmoothParameterMatching.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/mrcImage/mrcView/src/X86LINUX64/.Depend b/src/Tools/mrcImage/mrcView/src/X86LINUX64/.Depend
index a33f57c..5aed734 100644 (file)
--- a/src/Tools/mrcImage/mrcView/src/X86LINUX64/.Depend
+++ b/src/Tools/mrcImage/mrcView/src/X86LINUX64/.Depend
@@ -163,3 +163,28 @@ eosmrcView.o: eosmrcView.cc /usr/include/stdio.h /usr/include/features.h \
  /usr/include/X11/Xlib.h /usr/include/X11/X.h \
  /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
  /home/people/tacyas/Eos/util/X86LINUX64/include/tkDecls.h
+eosmrcView.o: eosmrcView.cc /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/tk.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/tcl.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/tclDecls.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/tclPlatDecls.h \
+ /usr/include/X11/Xlib.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/include/tkDecls.h

diff --git a/src/Tools/openGL/gmolvie/src/X86LINUX64/.Depend b/src/Tools/openGL/gmolvie/src/X86LINUX64/.Depend
index 1832792..59764d7 100644 (file)
--- a/src/Tools/openGL/gmolvie/src/X86LINUX64/.Depend
+++ b/src/Tools/openGL/gmolvie/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/gmolvie.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 gmolvie.o: gmolvie.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,24 +49,25 @@ gmolvie.o: gmolvie.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/gmolvie.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/openGL.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -74,26 +77,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/gmolvie.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -101,14 +105,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/openGL/molvie/src/X86LINUX64/.Depend b/src/Tools/openGL/molvie/src/X86LINUX64/.Depend
index 143bf74..01dedc1 100644 (file)
--- a/src/Tools/openGL/molvie/src/X86LINUX64/.Depend
+++ b/src/Tools/openGL/molvie/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/molvie.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,66 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/molvie.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
-molvie.o: molvie.c /usr/include/stdio.h /usr/include/features.h \
- /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
- /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
- /usr/include/bits/select.h /usr/include/bits/sigset.h \
- /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/GL/glut.h \
- /usr/include/GL/freeglut_std.h /usr/include/GL/gl.h \
- /usr/include/GL/glext.h /usr/include/GL/glu.h ../inc/config.h \
- ../inc/../inc/molvie.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
- /home/people/tacyas/Eos/include/openGL.h \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/molvieDefault.h \
- /home/people/tacyas/Eos/include/lmolvie.h \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Contour.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -114,14 +77,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/openGL/molvieDock/src/X86LINUX64/.Depend b/src/Tools/openGL/molvieDock/src/X86LINUX64/.Depend
index aaf453f..f3604f8 100644 (file)
--- a/src/Tools/openGL/molvieDock/src/X86LINUX64/.Depend
+++ b/src/Tools/openGL/molvieDock/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/molvieDock.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,66 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/molvieDock.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
-molvieDock.o: molvieDock.c /usr/include/stdio.h /usr/include/features.h \
- /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
- /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
- /usr/include/bits/select.h /usr/include/bits/sigset.h \
- /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/GL/glut.h \
- /usr/include/GL/freeglut_std.h /usr/include/GL/gl.h \
- /usr/include/GL/glext.h /usr/include/GL/glu.h ../inc/config.h \
- ../inc/../inc/molvieDock.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
- /home/people/tacyas/Eos/include/openGL.h \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/molvieDockDefault.h \
- /home/people/tacyas/Eos/include/lmolvie.h \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Contour.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -114,14 +77,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/openGL/molvieFlight/src/X86LINUX64/.Depend b/src/Tools/openGL/molvieFlight/src/X86LINUX64/.Depend
index 62716f2..14a9bea 100644 (file)
--- a/src/Tools/openGL/molvieFlight/src/X86LINUX64/.Depend
+++ b/src/Tools/openGL/molvieFlight/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/molvieFlight.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,67 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/molvieFlight.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
-molvieFlight.o: molvieFlight.c /usr/include/stdio.h \
- /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
- /usr/include/bits/select.h /usr/include/bits/sigset.h \
- /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/GL/glut.h \
- /usr/include/GL/freeglut_std.h /usr/include/GL/gl.h \
- /usr/include/GL/glext.h /usr/include/GL/glu.h ../inc/config.h \
- ../inc/../inc/molvieFlight.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
- /home/people/tacyas/Eos/include/openGL.h \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/molvieFlightDefault.h \
- /home/people/tacyas/Eos/include/lmolvie.h \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Contour.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -117,14 +79,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/openGL/molvieMrcViewer/src/X86LINUX64/.Depend b/src/Tools/openGL/molvieMrcViewer/src/X86LINUX64/.Depend
index 3077fe6..1778da4 100644 (file)
--- a/src/Tools/openGL/molvieMrcViewer/src/X86LINUX64/.Depend
+++ b/src/Tools/openGL/molvieMrcViewer/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/molvieMrcViewer.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,67 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/molvieMrcViewer.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
-molvieMrcViewer.o: molvieMrcViewer.c /usr/include/stdio.h \
- /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
- /usr/include/bits/select.h /usr/include/bits/sigset.h \
- /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/GL/glut.h \
- /usr/include/GL/freeglut_std.h /usr/include/GL/gl.h \
- /usr/include/GL/glext.h /usr/include/GL/glu.h ../inc/config.h \
- ../inc/../inc/molvieMrcViewer.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
- /home/people/tacyas/Eos/include/openGL.h \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/molvieMrcViewerDefault.h \
- /home/people/tacyas/Eos/include/lmolvie.h \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Contour.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -117,14 +79,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/openGL/molvieProjection/src/X86LINUX64/.Depend b/src/Tools/openGL/molvieProjection/src/X86LINUX64/.Depend
index 86f7fe3..4e1ceca 100644 (file)
--- a/src/Tools/openGL/molvieProjection/src/X86LINUX64/.Depend
+++ b/src/Tools/openGL/molvieProjection/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/molvieProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,67 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/molvieProjection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
-molvieProjection.o: molvieProjection.c /usr/include/stdio.h \
- /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
- /usr/include/bits/select.h /usr/include/bits/sigset.h \
- /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/GL/glut.h \
- /usr/include/GL/freeglut_std.h /usr/include/GL/gl.h \
- /usr/include/GL/glext.h /usr/include/GL/glu.h ../inc/config.h \
- ../inc/../inc/molvieProjection.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
- /home/people/tacyas/Eos/include/openGL.h \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/molvieProjectionDefault.h \
- /home/people/tacyas/Eos/include/lmolvie.h \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Contour.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -117,14 +79,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/openGL/molvieViewer/src/X86LINUX64/.Depend b/src/Tools/openGL/molvieViewer/src/X86LINUX64/.Depend
index 37fb918..3f8555c 100644 (file)
--- a/src/Tools/openGL/molvieViewer/src/X86LINUX64/.Depend
+++ b/src/Tools/openGL/molvieViewer/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/molvieViewer.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,67 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/molvieViewer.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
-molvieViewer.o: molvieViewer.c /usr/include/stdio.h \
- /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
- /usr/include/bits/select.h /usr/include/bits/sigset.h \
- /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/GL/glut.h \
- /usr/include/GL/freeglut_std.h /usr/include/GL/gl.h \
- /usr/include/GL/glext.h /usr/include/GL/glu.h ../inc/config.h \
- ../inc/../inc/molvieViewer.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
- /home/people/tacyas/Eos/include/openGL.h \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/molvieViewerDefault.h \
- /home/people/tacyas/Eos/include/lmolvie.h \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Contour.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -117,14 +79,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/openGL/rasmonyo/src/X86LINUX64/.Depend b/src/Tools/openGL/rasmonyo/src/X86LINUX64/.Depend
index 71060ca..410ac54 100644 (file)
--- a/src/Tools/openGL/rasmonyo/src/X86LINUX64/.Depend
+++ b/src/Tools/openGL/rasmonyo/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/rasmonyo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/rasmonyo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 rasmonyo.o: rasmonyo.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,24 +79,25 @@ rasmonyo.o: rasmonyo.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/rasmonyo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/openGL.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -101,14 +105,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdb2SketchMacro/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdb2SketchMacro/src/X86LINUX64/.Depend
index 3834efa..3f3569d 100644 (file)
--- a/src/Tools/pdbUtil/pdb2SketchMacro/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdb2SketchMacro/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdb2SketchMacro.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdb2SketchMacro.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdb2SketchMacro.o: pdb2SketchMacro.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ pdb2SketchMacro.o: pdb2SketchMacro.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdb2SketchMacro.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdb2bender/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdb2bender/src/X86LINUX64/.Depend
index 0574607..b279425 100644 (file)
--- a/src/Tools/pdbUtil/pdb2bender/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdb2bender/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdb2bender.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdb2bender.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdb2bender.o: pdb2bender.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,23 +79,24 @@ pdb2bender.o: pdb2bender.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdb2bender.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -100,14 +104,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdb2mrc/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdb2mrc/src/X86LINUX64/.Depend
index 9200348..cc8d3f5 100644 (file)
--- a/src/Tools/pdbUtil/pdb2mrc/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdb2mrc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdb2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdb2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdb2mrc.o: pdb2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,15 +79,16 @@ pdb2mrc.o: pdb2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdb2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -95,14 +99,15 @@ pdb2mrc.o: pdb2mrc.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdb2mrc2d/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdb2mrc2d/src/X86LINUX64/.Depend
index f89b52d..d334186 100644 (file)
--- a/src/Tools/pdbUtil/pdb2mrc2d/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdb2mrc2d/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdb2mrc2d.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdb2mrc2d.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdb2mrc2d.o: pdb2mrc2d.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,15 +79,16 @@ pdb2mrc2d.o: pdb2mrc2d.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h ../inc/config.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h ../inc/config.h \
  ../inc/../inc/pdb2mrc2d.h /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/lpdb2mrcInfo.h \
@@ -94,14 +98,15 @@ pdb2mrc2d.o: pdb2mrc2d.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdb2mrc2dWithCTF/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdb2mrc2dWithCTF/src/X86LINUX64/.Depend
index 9e96262..9e7e693 100644 (file)
--- a/src/Tools/pdbUtil/pdb2mrc2dWithCTF/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdb2mrc2dWithCTF/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdb2mrc2dWithCTF.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdb2mrc2dWithCTF.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdb2mrc2dWithCTF.o: pdb2mrc2dWithCTF.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,18 +83,19 @@ pdb2mrc2dWithCTF.o: pdb2mrc2dWithCTF.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdb2mrc2dWithCTF.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -99,14 +103,15 @@ pdb2mrc2dWithCTF.o: pdb2mrc2dWithCTF.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -114,14 +119,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbAtomSection/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbAtomSection/src/X86LINUX64/.Depend
index f308be2..ad9c353 100644 (file)
--- a/src/Tools/pdbUtil/pdbAtomSection/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbAtomSection/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbAtomSection.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbAtomSection.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbAtomSection.o: pdbAtomSection.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,15 +82,16 @@ pdbAtomSection.o: pdbAtomSection.c /usr/include/stdio.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/Memory.h \
@@ -99,14 +103,15 @@ pdbAtomSection.o: pdbAtomSection.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -114,14 +119,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbCAOnly/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbCAOnly/src/X86LINUX64/.Depend
index 75591ce..66f8b30 100755 (executable)
--- a/src/Tools/pdbUtil/pdbCAOnly/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbCAOnly/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbCAOnly.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbCAOnly.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdbCAOnly.o: pdbCAOnly.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,26 +81,28 @@ pdbCAOnly.o: pdbCAOnly.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +110,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbChargeFit/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbChargeFit/src/X86LINUX64/.Depend
index fb37e64..3718268 100644 (file)
--- a/src/Tools/pdbUtil/pdbChargeFit/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbChargeFit/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbChargeFit.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbChargeFit.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbChargeFit.o: pdbChargeFit.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ pdbChargeFit.o: pdbChargeFit.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h ../inc/config.h \
  ../inc/../inc/pdbChargeFit.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbCoordAdd/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbCoordAdd/src/X86LINUX64/.Depend
index bc6ac7d..85e8688 100644 (file)
--- a/src/Tools/pdbUtil/pdbCoordAdd/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbCoordAdd/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbCoordAdd.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbCoordAdd.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdbCoordAdd.o: pdbCoordAdd.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,15 +82,16 @@ pdbCoordAdd.o: pdbCoordAdd.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbCoordAdd.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -96,14 +100,15 @@ pdbCoordAdd.o: pdbCoordAdd.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbCrystalCreate/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbCrystalCreate/src/X86LINUX64/.Depend
index d6fded4..dc706bc 100644 (file)
--- a/src/Tools/pdbUtil/pdbCrystalCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbCrystalCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbCrystalCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbCrystalCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbCrystalCreate.o: pdbCrystalCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,15 +83,16 @@ pdbCrystalCreate.o: pdbCrystalCreate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbCrystalCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -97,14 +101,15 @@ pdbCrystalCreate.o: pdbCrystalCreate.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbDisplay/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbDisplay/src/X86LINUX64/.Depend
index 4daf54f..12be54a 100644 (file)
--- a/src/Tools/pdbUtil/pdbDisplay/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbDisplay/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbDisplay.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbDisplay.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdbDisplay.o: pdbDisplay.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,14 +81,15 @@ pdbDisplay.o: pdbDisplay.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -93,14 +97,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbFileMerge/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbFileMerge/src/X86LINUX64/.Depend
index 1ebd540..b8c3222 100644 (file)
--- a/src/Tools/pdbUtil/pdbFileMerge/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbFileMerge/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbFileMerge.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbFileMerge.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbFileMerge.o: pdbFileMerge.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ pdbFileMerge.o: pdbFileMerge.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbFileMerge.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbHelix/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbHelix/src/X86LINUX64/.Depend
index 3a05b3c..632e747 100644 (file)
--- a/src/Tools/pdbUtil/pdbHelix/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbHelix/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbHelix.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbHelix.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdbHelix.o: pdbHelix.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,16 +81,17 @@ pdbHelix.o: pdbHelix.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/Random.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/lpdb2mrcInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h \
@@ -96,14 +100,15 @@ pdbHelix.o: pdbHelix.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbHomologySearch/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbHomologySearch/src/X86LINUX64/.Depend
index 1d842d8..e01b1ea 100644 (file)
--- a/src/Tools/pdbUtil/pdbHomologySearch/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbHomologySearch/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbHomologySearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbHomologySearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbHomologySearch.o: pdbHomologySearch.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ pdbHomologySearch.o: pdbHomologySearch.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbHomologySearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbInfo/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbInfo/src/X86LINUX64/.Depend
index de4eeb5..e1f8670 100644 (file)
--- a/src/Tools/pdbUtil/pdbInfo/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbInfo/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdbInfo.o: pdbInfo.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,15 +79,16 @@ pdbInfo.o: pdbInfo.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -93,14 +97,15 @@ pdbInfo.o: pdbInfo.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbListRMSDCalc/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbListRMSDCalc/src/X86LINUX64/.Depend
index 027ede4..5b35fce 100755 (executable)
--- a/src/Tools/pdbUtil/pdbListRMSDCalc/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbListRMSDCalc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbListRMSDCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbListRMSDCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbListRMSDCalc.o: pdbListRMSDCalc.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,16 +83,17 @@ pdbListRMSDCalc.o: pdbListRMSDCalc.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbListRMSDCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
@@ -97,14 +101,15 @@ pdbListRMSDCalc0404.o: pdbListRMSDCalc0404.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -115,29 +120,31 @@ pdbListRMSDCalc0404.o: pdbListRMSDCalc0404.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbListRMSDCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -145,14 +152,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbListVectorCalc/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbListVectorCalc/src/X86LINUX64/.Depend
index d2787ed..157f1c1 100755 (executable)
--- a/src/Tools/pdbUtil/pdbListVectorCalc/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbListVectorCalc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbListVectorCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbListVectorCalc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -76,14 +79,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbMatrixCreate/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbMatrixCreate/src/X86LINUX64/.Depend
index 964721f..718b3b5 100644 (file)
--- a/src/Tools/pdbUtil/pdbMatrixCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbMatrixCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbMatrixCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbMatrixCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbMatrixCreate.o: pdbMatrixCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -82,28 +85,30 @@ pdbMatrixCreate.o: pdbMatrixCreate.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/nr2.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbMolecularInterfaceFind/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbMolecularInterfaceFind/src/X86LINUX64/.Depend
index a3bedfa..caf1ae2 100644 (file)
--- a/src/Tools/pdbUtil/pdbMolecularInterfaceFind/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbMolecularInterfaceFind/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbMolecularInterfaceFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbMolecularInterfaceFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbMolecularInterfaceFind.o: pdbMolecularInterfaceFind.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,15 +83,16 @@ pdbMolecularInterfaceFind.o: pdbMolecularInterfaceFind.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbMolecularInterfaceFind.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -96,14 +100,15 @@ pdbMolecularInterfaceFind.o: pdbMolecularInterfaceFind.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbMove/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbMove/src/X86LINUX64/.Depend
index 8ffea64..62078ca 100644 (file)
--- a/src/Tools/pdbUtil/pdbMove/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbMove/src/X86LINUX64/.Depend
@@ -58,6 +58,43 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
+pdbMove.o: pdbMove.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbMove.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/include/pdbFile.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/pdbInfoGet.h \
+ /home/people/tacyas/Eos/include/pdbFile.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \

diff --git a/src/Tools/pdbUtil/pdbNAMDRestraintCreate/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbNAMDRestraintCreate/src/X86LINUX64/.Depend
index 585c7cd..3686871 100644 (file)
--- a/src/Tools/pdbUtil/pdbNAMDRestraintCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbNAMDRestraintCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbNAMDRestraintCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbNAMDRestraintCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbNAMDRestraintCreate.o: pdbNAMDRestraintCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ pdbNAMDRestraintCreate.o: pdbNAMDRestraintCreate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbNAMDRestraintCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbNearAtomListShow/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbNearAtomListShow/src/X86LINUX64/.Depend
index ad9f01a..8cdc6ab 100644 (file)
--- a/src/Tools/pdbUtil/pdbNearAtomListShow/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbNearAtomListShow/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbNearAtomListShow.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbNearAtomListShow.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbNearAtomListShow.o: pdbNearAtomListShow.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,15 +83,16 @@ pdbNearAtomListShow.o: pdbNearAtomListShow.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbNearAtomListShow.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -97,14 +101,15 @@ pdbNearAtomListShow.o: pdbNearAtomListShow.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbOneProteinGet/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbOneProteinGet/src/X86LINUX64/.Depend
index f3076b7..7a631a9 100644 (file)
--- a/src/Tools/pdbUtil/pdbOneProteinGet/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbOneProteinGet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbOneProteinGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbOneProteinGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbOneProteinGet.o: pdbOneProteinGet.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ pdbOneProteinGet.o: pdbOneProteinGet.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbOneProteinGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbPCA/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbPCA/src/X86LINUX64/.Depend
index 1141b26..faa08d4 100644 (file)
--- a/src/Tools/pdbUtil/pdbPCA/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbPCA/src/X86LINUX64/.Depend
@@ -88,6 +88,7 @@ pdbPCA.o: pdbPCA.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/mrcImage.h \

diff --git a/src/Tools/pdbUtil/pdbProteinIDSet/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbProteinIDSet/src/X86LINUX64/.Depend
index 41e1a5f..9275a33 100644 (file)
--- a/src/Tools/pdbUtil/pdbProteinIDSet/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbProteinIDSet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbProteinIDSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbProteinIDSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbProteinIDSet.o: pdbProteinIDSet.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -82,26 +85,28 @@ pdbProteinIDSet.o: pdbProteinIDSet.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbRhoFit/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbRhoFit/src/X86LINUX64/.Depend
index 877dbea..fa40924 100644 (file)
--- a/src/Tools/pdbUtil/pdbRhoFit/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbRhoFit/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbRhoFit.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbRhoFit.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdbRhoFit.o: pdbRhoFit.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -77,30 +80,32 @@ pdbRhoFit.o: pdbRhoFit.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h /usr/include/memory.h ../inc/config.h \
  ../inc/../inc/pdbRhoFit.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbRhoFitCoiledCoil/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbRhoFitCoiledCoil/src/X86LINUX64/.Depend
index 483ce3c..d90f2d6 100644 (file)
--- a/src/Tools/pdbUtil/pdbRhoFitCoiledCoil/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbRhoFitCoiledCoil/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbRhoFitCoiledCoil.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbRhoFitCoiledCoil.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -76,14 +79,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbRhoFitTm/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbRhoFitTm/src/X86LINUX64/.Depend
index 38c1abe..51455fb 100644 (file)
--- a/src/Tools/pdbUtil/pdbRhoFitTm/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbRhoFitTm/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbRhoFitTm.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbRhoFitTm.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdbRhoFitTm.o: pdbRhoFitTm.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,30 +82,32 @@ pdbRhoFitTm.o: pdbRhoFitTm.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h /usr/include/memory.h ../inc/config.h \
  ../inc/../inc/pdbRhoFitTm.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbRotation/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbRotation/src/X86LINUX64/.Depend
index cbda0b7..75f8be0 100644 (file)
--- a/src/Tools/pdbUtil/pdbRotation/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbRotation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbRotation.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbRotation.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdbRotation.o: pdbRotation.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,27 +83,29 @@ pdbRotation.o: pdbRotation.c /usr/include/stdio.h /usr/include/features.h \
  ../inc/../inc/pdbRotation.h /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbSecondaryStructurePrint/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbSecondaryStructurePrint/src/X86LINUX64/.Depend
index b92911d..90dee36 100644 (file)
--- a/src/Tools/pdbUtil/pdbSecondaryStructurePrint/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbSecondaryStructurePrint/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbSecondaryStructurePrint.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbSecondaryStructurePrint.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbSecondaryStructurePrint.o: pdbSecondaryStructurePrint.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ pdbSecondaryStructurePrint.o: pdbSecondaryStructurePrint.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbSecondaryStructurePrint.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbShapeFit/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbShapeFit/src/X86LINUX64/.Depend
index 9a5e892..b717c2f 100644 (file)
--- a/src/Tools/pdbUtil/pdbShapeFit/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbShapeFit/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbShapeFit.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbShapeFit.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdbShapeFit.o: pdbShapeFit.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,17 +82,18 @@ pdbShapeFit.o: pdbShapeFit.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbShapeFit.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/lmrcImageContourSurface.h \
@@ -99,14 +103,15 @@ pdbShapeFit.o: pdbShapeFit.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -114,14 +119,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbSurface/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbSurface/src/X86LINUX64/.Depend
index 6e01893..abcfc48 100644 (file)
--- a/src/Tools/pdbUtil/pdbSurface/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbSurface/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbSurface.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbSurface.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdbSurface.o: pdbSurface.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,15 +79,16 @@ pdbSurface.o: pdbSurface.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbSurface.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -94,14 +98,15 @@ pdbSurface.o: pdbSurface.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbTempFactorSet/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbTempFactorSet/src/X86LINUX64/.Depend
index ca831e6..8fdf79f 100644 (file)
--- a/src/Tools/pdbUtil/pdbTempFactorSet/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbTempFactorSet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbTempFactorSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbTempFactorSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbTempFactorSet.o: pdbTempFactorSet.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,30 +83,32 @@ pdbTempFactorSet.o: pdbTempFactorSet.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbTempFactorSet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbTrans/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbTrans/src/X86LINUX64/.Depend
index 0f85725..33548ae 100644 (file)
--- a/src/Tools/pdbUtil/pdbTrans/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbTrans/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbTrans.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/pdbTrans.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdbTrans.o: pdbTrans.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,28 +81,30 @@ pdbTrans.o: pdbTrans.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/genUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -107,14 +112,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbTwoProteinFit/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbTwoProteinFit/src/X86LINUX64/.Depend
index 5ee793b..7992dd1 100644 (file)
--- a/src/Tools/pdbUtil/pdbTwoProteinFit/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbTwoProteinFit/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbTwoProteinFit.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbTwoProteinFit.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pdbTwoProteinFit.o: pdbTwoProteinFit.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,14 +83,15 @@ pdbTwoProteinFit.o: pdbTwoProteinFit.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbTwoProteinFit.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -98,14 +102,15 @@ pdbTwoProteinFit.o: pdbTwoProteinFit.c /usr/include/stdio.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +118,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/pdbWaterAdd/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/pdbWaterAdd/src/X86LINUX64/.Depend
index 2158d5a..1d3f939 100755 (executable)
--- a/src/Tools/pdbUtil/pdbWaterAdd/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/pdbWaterAdd/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbWaterAdd.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbWaterAdd.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 pdbWaterAdd.o: pdbWaterAdd.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,16 +82,17 @@ pdbWaterAdd.o: pdbWaterAdd.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pdbWaterAdd.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Random.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -99,18 +103,19 @@ pdbWaterAdd.o: pdbWaterAdd.c /usr/include/stdio.h /usr/include/features.h \
 randwater27.o: randwater27.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -118,14 +123,15 @@ randwater27.o: randwater27.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -133,14 +139,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pdbUtil/vector2pdb/src/X86LINUX64/.Depend b/src/Tools/pdbUtil/vector2pdb/src/X86LINUX64/.Depend
index 58b2055..e7655c9 100644 (file)
--- a/src/Tools/pdbUtil/vector2pdb/src/X86LINUX64/.Depend
+++ b/src/Tools/pdbUtil/vector2pdb/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/vector2pdb.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/vector2pdb.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -74,14 +77,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -89,14 +93,15 @@ util.o: util.c /usr/include/stdio.h /usr/include/features.h \
 vector2pdb.o: vector2pdb.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -106,15 +111,16 @@ vector2pdb.o: vector2pdb.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/vector2pdb.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/pdbFile.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \

diff --git a/src/Tools/pickup/mrcImageNeuralNetParticleExtraction/src/X86LINUX64/.Depend b/src/Tools/pickup/mrcImageNeuralNetParticleExtraction/src/X86LINUX64/.Depend
index 44586a0..68e4a01 100644 (file)
--- a/src/Tools/pickup/mrcImageNeuralNetParticleExtraction/src/X86LINUX64/.Depend
+++ b/src/Tools/pickup/mrcImageNeuralNetParticleExtraction/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNeuralNetParticleExtraction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNeuralNetParticleExtraction.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -76,14 +79,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/pickup/mrcImageNeuralNetParticleLearning/src/X86LINUX64/.Depend b/src/Tools/pickup/mrcImageNeuralNetParticleLearning/src/X86LINUX64/.Depend
index ad7894f..3872a73 100644 (file)
--- a/src/Tools/pickup/mrcImageNeuralNetParticleLearning/src/X86LINUX64/.Depend
+++ b/src/Tools/pickup/mrcImageNeuralNetParticleLearning/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNeuralNetParticleLearning.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNeuralNetParticleLearning.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageNeuralNetParticleLearning.o: mrcImageNeuralNetParticleLearning.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,17 +83,18 @@ mrcImageNeuralNetParticleLearning.o: mrcImageNeuralNetParticleLearning.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNeuralNetParticleLearning.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/NeuralNet.h \
@@ -100,14 +104,15 @@ mrcImageNeuralNetParticleLearning.o: mrcImageNeuralNetParticleLearning.c \
 test.o: test.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -118,30 +123,32 @@ test.o: test.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageNeuralNetParticleLearning.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -149,14 +156,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/psUtil/psFileMerge/src/X86LINUX64/.Depend b/src/Tools/psUtil/psFileMerge/src/X86LINUX64/.Depend
index 688d5f3..6de431a 100644 (file)
--- a/src/Tools/psUtil/psFileMerge/src/X86LINUX64/.Depend
+++ b/src/Tools/psUtil/psFileMerge/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/psFileMerge.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/psFileMerge.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 psFileMerge.o: psFileMerge.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -77,26 +80,27 @@ psFileMerge.o: psFileMerge.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/Memory.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h /home/people/tacyas/Eos/include/psFile.h \
  /home/people/tacyas/Eos/include/File.h ../inc/config.h \
  ../inc/../inc/psFileMerge.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -104,14 +108,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/psUtil/psFilePageMerge/src/X86LINUX64/.Depend b/src/Tools/psUtil/psFilePageMerge/src/X86LINUX64/.Depend
index 3504610..f4e015d 100644 (file)
--- a/src/Tools/psUtil/psFilePageMerge/src/X86LINUX64/.Depend
+++ b/src/Tools/psUtil/psFilePageMerge/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/psFilePageMerge.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/psFilePageMerge.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ psFilePageMerge.o: psFilePageMerge.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,26 +81,27 @@ psFilePageMerge.o: psFilePageMerge.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/Memory.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h /home/people/tacyas/Eos/include/psFile.h \
  /home/people/tacyas/Eos/include/File.h ../inc/config.h \
  ../inc/../inc/psFilePageMerge.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/random/randomNormalGet/src/X86LINUX64/.Depend b/src/Tools/random/randomNormalGet/src/X86LINUX64/.Depend
index f5963dd..9e4c3f3 100644 (file)
--- a/src/Tools/random/randomNormalGet/src/X86LINUX64/.Depend
+++ b/src/Tools/random/randomNormalGet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/randomNormalGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/randomNormalGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ randomNormalGet.o: randomNormalGet.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +84,28 @@ randomNormalGet.o: randomNormalGet.c /usr/include/stdio.h \
  ../inc/../inc/randomNormalGet.h /home/people/tacyas/Eos/include/Random.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/random/randomUniformGet/src/X86LINUX64/.Depend b/src/Tools/random/randomUniformGet/src/X86LINUX64/.Depend
index 6baab8b..1518b6f 100644 (file)
--- a/src/Tools/random/randomUniformGet/src/X86LINUX64/.Depend
+++ b/src/Tools/random/randomUniformGet/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/randomUniformGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/randomUniformGet.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ randomUniformGet.o: randomUniformGet.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,22 +84,23 @@ randomUniformGet.o: randomUniformGet.c /usr/include/stdio.h \
  ../inc/../inc/randomUniformGet.h \
  /home/people/tacyas/Eos/include/Random.h \
  /home/people/tacyas/Eos/include/Memory.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -104,14 +108,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/CheckCommonLineData/src/X86LINUX64/.Depend b/src/Tools/rec3d/CheckCommonLineData/src/X86LINUX64/.Depend
index ef44c99..6b279be 100644 (file)
--- a/src/Tools/rec3d/CheckCommonLineData/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/CheckCommonLineData/src/X86LINUX64/.Depend
@@ -2,14 +2,15 @@ CheckCommonLineData.o: CheckCommonLineData.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -20,31 +21,33 @@ CheckCommonLineData.o: CheckCommonLineData.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/CheckCommonLineData.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/lCommonLineCalculation.h
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -55,26 +58,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/CheckCommonLineData.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -85,26 +89,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/CheckCommonLineData.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/CheckOfOrientation/src/X86LINUX64/.Depend b/src/Tools/rec3d/CheckOfOrientation/src/X86LINUX64/.Depend
index b7df674..216fbf5 100644 (file)
--- a/src/Tools/rec3d/CheckOfOrientation/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/CheckOfOrientation/src/X86LINUX64/.Depend
@@ -2,14 +2,15 @@ CheckOfOrientation.o: CheckOfOrientation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -20,27 +21,29 @@ CheckOfOrientation.o: CheckOfOrientation.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/CheckOfOrientation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/String.h
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -51,26 +54,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/CheckOfOrientation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +85,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/CheckOfOrientation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/CheckOrientationByDegree/src/X86LINUX64/.Depend b/src/Tools/rec3d/CheckOrientationByDegree/src/X86LINUX64/.Depend
index fc9bea3..1ce1071 100644 (file)
--- a/src/Tools/rec3d/CheckOrientationByDegree/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/CheckOrientationByDegree/src/X86LINUX64/.Depend
@@ -2,14 +2,15 @@ CheckOrientationByDegree.o: CheckOrientationByDegree.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -20,27 +21,29 @@ CheckOrientationByDegree.o: CheckOrientationByDegree.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/CheckOrientationByDegree.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -51,26 +54,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/CheckOrientationByDegree.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +85,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/CheckOrientationByDegree.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/CommonLineCalculation/src/X86LINUX64/.Depend b/src/Tools/rec3d/CommonLineCalculation/src/X86LINUX64/.Depend
index 8ad86b9..3539fe2 100644 (file)
--- a/src/Tools/rec3d/CommonLineCalculation/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/CommonLineCalculation/src/X86LINUX64/.Depend
@@ -2,14 +2,15 @@ CommonLineCalculation.o: CommonLineCalculation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -20,14 +21,15 @@ CommonLineCalculation.o: CommonLineCalculation.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/CommonLineCalculation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/lCommonLineCalculation.h \
@@ -36,14 +38,15 @@ CommonLineCalculation.o: CommonLineCalculation.c /usr/include/stdio.h \
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -54,26 +57,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/CommonLineCalculation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -84,26 +88,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/CommonLineCalculation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/EvaluateCorrelationMapwithCommonLine/src/X86LINUX64/.Depend b/src/Tools/rec3d/EvaluateCorrelationMapwithCommonLine/src/X86LINUX64/.Depend
index 29ebf9a..2848309 100644 (file)
--- a/src/Tools/rec3d/EvaluateCorrelationMapwithCommonLine/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/EvaluateCorrelationMapwithCommonLine/src/X86LINUX64/.Depend
@@ -3,14 +3,15 @@ EvaluateCorrelationMapwithCommonLine.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -21,29 +22,31 @@ EvaluateCorrelationMapwithCommonLine.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/EvaluateCorrelationMapwithCommonLine.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/lEvaluateCorrelationMapwithCommonLine.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -54,26 +57,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/EvaluateCorrelationMapwithCommonLine.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -84,26 +88,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/EvaluateCorrelationMapwithCommonLine.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/FETOrientationSearchByAnnealing/src/X86LINUX64/.Depend b/src/Tools/rec3d/FETOrientationSearchByAnnealing/src/X86LINUX64/.Depend
index 6a5ef90..2de4122 100644 (file)
--- a/src/Tools/rec3d/FETOrientationSearchByAnnealing/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/FETOrientationSearchByAnnealing/src/X86LINUX64/.Depend
@@ -2,14 +2,15 @@ FETOrientationSearchByAnnealing.o: FETOrientationSearchByAnnealing.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -20,30 +21,32 @@ FETOrientationSearchByAnnealing.o: FETOrientationSearchByAnnealing.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/FETOrientationSearchByAnnealing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/lFETOrientationSearchByAnnealing.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lCommonLineCalculation.h
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -54,26 +57,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/FETOrientationSearchByAnnealing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -84,26 +88,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/FETOrientationSearchByAnnealing.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/FETOrientationSearchByFeatureAlignment/src/X86LINUX64/.Depend b/src/Tools/rec3d/FETOrientationSearchByFeatureAlignment/src/X86LINUX64/.Depend
index 2361fce..7b2c7df 100644 (file)
--- a/src/Tools/rec3d/FETOrientationSearchByFeatureAlignment/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/FETOrientationSearchByFeatureAlignment/src/X86LINUX64/.Depend
@@ -3,14 +3,15 @@ FETOrientationSearchByFeatureAlignment.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -21,12 +22,12 @@ FETOrientationSearchByFeatureAlignment.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/FETOrientationSearchByFeatureAlignment.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/lFETOrientationSearchByFeatureAlignment.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/Memory.h \
@@ -42,14 +43,15 @@ FETOrientationSearchByFeatureAlignment.o: \
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -60,26 +62,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/FETOrientationSearchByFeatureAlignment.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -90,26 +93,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/FETOrientationSearchByFeatureAlignment.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -117,14 +121,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/FETmapOrientationSearchBySimultaneousFitting/src/X86LINUX64/.Depend b/src/Tools/rec3d/FETmapOrientationSearchBySimultaneousFitting/src/X86LINUX64/.Depend
index baa17e1..49ea718 100644 (file)
--- a/src/Tools/rec3d/FETmapOrientationSearchBySimultaneousFitting/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/FETmapOrientationSearchBySimultaneousFitting/src/X86LINUX64/.Depend
@@ -3,14 +3,15 @@ FETmapOrientationSearchBySimultaneousFitting.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -21,29 +22,31 @@ FETmapOrientationSearchBySimultaneousFitting.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/FETmapOrientationSearchBySimultaneousFitting.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/lFETmapOrientationSearchBySimultaneousFitting.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -54,26 +57,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/FETmapOrientationSearchBySimultaneousFitting.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -84,26 +88,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/FETmapOrientationSearchBySimultaneousFitting.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/FETsmallMapSetCreate_forSimultaneousMinimization/src/X86LINUX64/.Depend b/src/Tools/rec3d/FETsmallMapSetCreate_forSimultaneousMinimization/src/X86LINUX64/.Depend
index c4d68bf..b0cc783 100644 (file)
--- a/src/Tools/rec3d/FETsmallMapSetCreate_forSimultaneousMinimization/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/FETsmallMapSetCreate_forSimultaneousMinimization/src/X86LINUX64/.Depend
@@ -3,14 +3,15 @@ FETsmallMapSetCreate_forSimultaneousMinimization.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -21,29 +22,31 @@ FETsmallMapSetCreate_forSimultaneousMinimization.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/FETsmallMapSetCreate_forSimultaneousMinimization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/lFETsmallMapSetCreate_forSimultaneousMinimization.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -54,26 +57,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/FETsmallMapSetCreate_forSimultaneousMinimization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -84,26 +88,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/FETsmallMapSetCreate_forSimultaneousMinimization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/LCalculationForOrientationSearch/src/X86LINUX64/.Depend b/src/Tools/rec3d/LCalculationForOrientationSearch/src/X86LINUX64/.Depend
index c398c1a..c5eec56 100644 (file)
--- a/src/Tools/rec3d/LCalculationForOrientationSearch/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/LCalculationForOrientationSearch/src/X86LINUX64/.Depend
@@ -2,14 +2,15 @@ LCalculationForOrientationSearch.o: LCalculationForOrientationSearch.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -20,25 +21,26 @@ LCalculationForOrientationSearch.o: LCalculationForOrientationSearch.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/LCalculationForOrientationSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/LCalculationForOrientationSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -79,26 +82,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/LCalculationForOrientationSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -106,14 +110,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/ProjectionDirectionMapCreate/src/X86LINUX64/.Depend b/src/Tools/rec3d/ProjectionDirectionMapCreate/src/X86LINUX64/.Depend
index 381c758..29b6fb0 100644 (file)
--- a/src/Tools/rec3d/ProjectionDirectionMapCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/ProjectionDirectionMapCreate/src/X86LINUX64/.Depend
@@ -2,14 +2,15 @@ ProjectionDirectionMapCreate.o: ProjectionDirectionMapCreate.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -20,27 +21,29 @@ ProjectionDirectionMapCreate.o: ProjectionDirectionMapCreate.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ProjectionDirectionMapCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -51,26 +54,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ProjectionDirectionMapCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,26 +85,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/ProjectionDirectionMapCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +113,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/WeightCalculationOfCommonLineSearch/src/X86LINUX64/.Depend b/src/Tools/rec3d/WeightCalculationOfCommonLineSearch/src/X86LINUX64/.Depend
index 6f998c8..166d9f1 100644 (file)
--- a/src/Tools/rec3d/WeightCalculationOfCommonLineSearch/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/WeightCalculationOfCommonLineSearch/src/X86LINUX64/.Depend
@@ -3,14 +3,15 @@ WeightCalculationOfCommonLineSearch.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -21,12 +22,12 @@ WeightCalculationOfCommonLineSearch.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/WeightCalculationOfCommonLineSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -34,6 +35,7 @@ WeightCalculationOfCommonLineSearch.o: \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/lmrcImageSinogram.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -44,14 +46,15 @@ WeightCalculationOfCommonLineSearch.o: \
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -62,26 +65,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/WeightCalculationOfCommonLineSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -92,26 +96,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/WeightCalculationOfCommonLineSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -119,14 +124,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/WeightCalculationOfCommonLineSearchByAllSinogram/src/X86LINUX64/.Depend b/src/Tools/rec3d/WeightCalculationOfCommonLineSearchByAllSinogram/src/X86LINUX64/.Depend
index 4b13c59..ea69f91 100644 (file)
--- a/src/Tools/rec3d/WeightCalculationOfCommonLineSearchByAllSinogram/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/WeightCalculationOfCommonLineSearchByAllSinogram/src/X86LINUX64/.Depend
@@ -3,14 +3,15 @@ WeightCalculationOfCommonLineSearchByAllSinogram.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -21,30 +22,32 @@ WeightCalculationOfCommonLineSearchByAllSinogram.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/WeightCalculationOfCommonLineSearchByAllSinogram.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/String.h
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -55,26 +58,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/WeightCalculationOfCommonLineSearchByAllSinogram.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -85,26 +89,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/WeightCalculationOfCommonLineSearchByAllSinogram.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/calcCommonLine/src/X86LINUX64/.Depend b/src/Tools/rec3d/calcCommonLine/src/X86LINUX64/.Depend
index 53e4f71..4133298 100644 (file)
--- a/src/Tools/rec3d/calcCommonLine/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/calcCommonLine/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/calcCommonLine.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ calcCommonLine.o: calcCommonLine.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -51,23 +53,24 @@ calcCommonLine.o: calcCommonLine.c /usr/include/stdio.h \
  ../inc/../inc/calcCommonLine.h \
  ../../../../Objects/General/Vector/inc/Vector.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,26 +81,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/calcCommonLine.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/commonLinesSearchByVoting/src/X86LINUX64/.Depend b/src/Tools/rec3d/commonLinesSearchByVoting/src/X86LINUX64/.Depend
index 5537dcb..bf7fed8 100644 (file)
--- a/src/Tools/rec3d/commonLinesSearchByVoting/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/commonLinesSearchByVoting/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/commonLinesSearchByVoting.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ commonLinesSearchByVoting.o: commonLinesSearchByVoting.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -50,28 +52,30 @@ commonLinesSearchByVoting.o: commonLinesSearchByVoting.c \
  /usr/include/bits/mathcalls.h /usr/include/ctype.h ../inc/config.h \
  ../inc/../inc/commonLinesSearchByVoting.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -82,26 +86,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/commonLinesSearchByVoting.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/ll2ltlg/src/X86LINUX64/.Depend b/src/Tools/rec3d/ll2ltlg/src/X86LINUX64/.Depend
index 02d0aca..71958b3 100644 (file)
--- a/src/Tools/rec3d/ll2ltlg/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/ll2ltlg/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ll2ltlg.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ll2ltlg.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 ll2ltlg.o: ll2ltlg.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,12 +79,12 @@ ll2ltlg.o: ll2ltlg.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ll2ltlg.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
@@ -98,14 +101,15 @@ ll2ltlg.o: ll2ltlg.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -113,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/llExtract/src/X86LINUX64/.Depend b/src/Tools/rec3d/llExtract/src/X86LINUX64/.Depend
index 7f21ad9..a43b851 100644 (file)
--- a/src/Tools/rec3d/llExtract/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/llExtract/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/llExtract.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/llExtract.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 llExtract.o: llExtract.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,18 +79,19 @@ llExtract.o: llExtract.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/llExtract.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/lllExtract.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -99,14 +103,15 @@ llExtract.o: llExtract.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -114,14 +119,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/llExtractCtfinfFileCreate/src/X86LINUX64/.Depend b/src/Tools/rec3d/llExtractCtfinfFileCreate/src/X86LINUX64/.Depend
index 52469a5..c69351e 100644 (file)
--- a/src/Tools/rec3d/llExtractCtfinfFileCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/llExtractCtfinfFileCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractCtfinfFileCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractCtfinfFileCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llExtractCtfinfFileCreate.o: llExtractCtfinfFileCreate.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ llExtractCtfinfFileCreate.o: llExtractCtfinfFileCreate.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractCtfinfFileCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/lllExtractCtfinfFileCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -93,14 +96,15 @@ llExtractCtfinfFileCreate.o: llExtractCtfinfFileCreate.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -108,14 +112,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/llExtractCtrlFileCreate/src/X86LINUX64/.Depend b/src/Tools/rec3d/llExtractCtrlFileCreate/src/X86LINUX64/.Depend
index 29422fe..338bcd7 100644 (file)
--- a/src/Tools/rec3d/llExtractCtrlFileCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/llExtractCtrlFileCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractCtrlFileCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractCtrlFileCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llExtractCtrlFileCreate.o: llExtractCtrlFileCreate.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,31 +83,33 @@ llExtractCtrlFileCreate.o: llExtractCtrlFileCreate.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractCtrlFileCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/lllExtractdYEstimate.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/llExtractWithLayerSeparation/src/X86LINUX64/.Depend b/src/Tools/rec3d/llExtractWithLayerSeparation/src/X86LINUX64/.Depend
index 46d95f0..2667e0c 100644 (file)
--- a/src/Tools/rec3d/llExtractWithLayerSeparation/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/llExtractWithLayerSeparation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ llExtractWithLayerSeparation.o: llExtractWithLayerSeparation.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ llExtractWithLayerSeparation.o: llExtractWithLayerSeparation.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h \
@@ -94,6 +97,7 @@ llExtractWithLayerSeparation.o: llExtractWithLayerSeparation.c \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/lllExtract.h \
@@ -116,14 +120,15 @@ llExtractWithLayerSeparation.o: llExtractWithLayerSeparation.c \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -131,14 +136,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/llExtractWithLayerSeparationCtrlFileCreate/src/X86LINUX64/.Depend b/src/Tools/rec3d/llExtractWithLayerSeparationCtrlFileCreate/src/X86LINUX64/.Depend
index bb08be2..fdf8e0f 100644 (file)
--- a/src/Tools/rec3d/llExtractWithLayerSeparationCtrlFileCreate/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/llExtractWithLayerSeparationCtrlFileCreate/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparationCtrlFileCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparationCtrlFileCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ llExtractWithLayerSeparationCtrlFileCreate.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,29 +84,31 @@ llExtractWithLayerSeparationCtrlFileCreate.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparationCtrlFileCreate.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/llExtractWithLayerSeparationCtrlFileCreateMyosin/src/X86LINUX64/.Depend b/src/Tools/rec3d/llExtractWithLayerSeparationCtrlFileCreateMyosin/src/X86LINUX64/.Depend
index 91180ce..291a748 100644 (file)
--- a/src/Tools/rec3d/llExtractWithLayerSeparationCtrlFileCreateMyosin/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/llExtractWithLayerSeparationCtrlFileCreateMyosin/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparationCtrlFileCreateMyosin.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparationCtrlFileCreateMyosin.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ llExtractWithLayerSeparationCtrlFileCreateMyosin.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,23 +84,24 @@ llExtractWithLayerSeparationCtrlFileCreateMyosin.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparationCtrlFileCreateMyosin.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/llExtractWithLayerSeparationFilamentInfo/src/X86LINUX64/.Depend b/src/Tools/rec3d/llExtractWithLayerSeparationFilamentInfo/src/X86LINUX64/.Depend
index 74c27f5..6c9af70 100644 (file)
--- a/src/Tools/rec3d/llExtractWithLayerSeparationFilamentInfo/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/llExtractWithLayerSeparationFilamentInfo/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparationFilamentInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparationFilamentInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ llExtractWithLayerSeparationFilamentInfo.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,29 +84,31 @@ llExtractWithLayerSeparationFilamentInfo.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparationFilamentInfo.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lllExtractdYEstimate.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/llExtractWithLayerSeparationServer/src/X86LINUX64/.Depend b/src/Tools/rec3d/llExtractWithLayerSeparationServer/src/X86LINUX64/.Depend
index 4e09fc5..56e949e 100644 (file)
--- a/src/Tools/rec3d/llExtractWithLayerSeparationServer/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/llExtractWithLayerSeparationServer/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparationServer.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparationServer.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -76,14 +79,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/llExtractWithLayerSeparationSingle/src/X86LINUX64/.Depend b/src/Tools/rec3d/llExtractWithLayerSeparationSingle/src/X86LINUX64/.Depend
index 722be50..9306ad1 100644 (file)
--- a/src/Tools/rec3d/llExtractWithLayerSeparationSingle/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/llExtractWithLayerSeparationSingle/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparationSingle.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparationSingle.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ llExtractWithLayerSeparationSingle.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,29 +84,31 @@ llExtractWithLayerSeparationSingle.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/llExtractWithLayerSeparationSingle.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/llData.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/ltlg2mrc/src/X86LINUX64/.Depend b/src/Tools/rec3d/ltlg2mrc/src/X86LINUX64/.Depend
index 6f0a5b0..724c7fb 100644 (file)
--- a/src/Tools/rec3d/ltlg2mrc/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/ltlg2mrc/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ltlg2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ltlg2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 ltlg2mrc.o: ltlg2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,12 +79,12 @@ ltlg2mrc.o: ltlg2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ltlg2mrc.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/String.h \
@@ -90,18 +93,20 @@ ltlg2mrc.o: ltlg2mrc.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/ltlg2ps/src/X86LINUX64/.Depend b/src/Tools/rec3d/ltlg2ps/src/X86LINUX64/.Depend
index 74b0760..843ae8c 100644 (file)
--- a/src/Tools/rec3d/ltlg2ps/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/ltlg2ps/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ltlg2ps.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/ltlg2ps.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -74,14 +77,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/mrc2Dto3D/src/X86LINUX64/.Depend b/src/Tools/rec3d/mrc2Dto3D/src/X86LINUX64/.Depend
index 4a002a6..4bfbd86 100755 (executable)
--- a/src/Tools/rec3d/mrc2Dto3D/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/mrc2Dto3D/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -18,26 +19,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2Dto3D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -47,26 +49,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2Dto3D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrc2Dto3D.o: mrc2Dto3D.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -76,12 +79,12 @@ mrc2Dto3D.o: mrc2Dto3D.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2Dto3D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -92,7 +95,7 @@ mrc2Dto3D.o: mrc2Dto3D.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/eosPThread.h /usr/include/pthread.h \
- /usr/include/sched.h /usr/include/bits/sched.h /usr/include/signal.h \
+ /usr/include/sched.h /usr/include/bits/sched.h \
  /usr/include/bits/setjmp.h /usr/include/errno.h \
  /usr/include/bits/errno.h /usr/include/linux/errno.h \
  /usr/include/asm/errno.h /usr/include/asm-generic/errno.h \
@@ -108,14 +111,15 @@ mrc2Dto3D.o: mrc2Dto3D.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -123,14 +127,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/mrc2Dto3DforVariation/src/X86LINUX64/.Depend b/src/Tools/rec3d/mrc2Dto3DforVariation/src/X86LINUX64/.Depend
index 3d3a89d..90bc9fe 100644 (file)
--- a/src/Tools/rec3d/mrc2Dto3DforVariation/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/mrc2Dto3DforVariation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrc2Dto3DforVariation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrc2Dto3DforVariation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -76,14 +79,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/mrc3Dto2D/src/X86LINUX64/.Depend b/src/Tools/rec3d/mrc3Dto2D/src/X86LINUX64/.Depend
index 5ca5206..5961090 100644 (file)
--- a/src/Tools/rec3d/mrc3Dto2D/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/mrc3Dto2D/src/X86LINUX64/.Depend
@@ -1,10 +1,10 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
  /usr/include/bits/waitstatus.h /usr/include/endian.h \
@@ -19,22 +19,22 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc3Dto2D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
  /usr/include/bits/waitstatus.h /usr/include/endian.h \
@@ -49,22 +49,22 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc3Dto2D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrc3Dto2D.o: mrc3Dto2D.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
  /usr/include/bits/waitstatus.h /usr/include/endian.h \
@@ -79,12 +79,12 @@ mrc3Dto2D.o: mrc3Dto2D.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc3Dto2D.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
@@ -105,10 +105,10 @@ mrc3Dto2D.o: mrc3Dto2D.c /usr/include/stdio.h /usr/include/features.h \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
  /usr/include/bits/waitstatus.h /usr/include/endian.h \
@@ -121,10 +121,10 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.5/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
  /usr/include/bits/waitstatus.h /usr/include/endian.h \

diff --git a/src/Tools/rec3d/mrcImageCommonLineSearch/src/X86LINUX64/.Depend b/src/Tools/rec3d/mrcImageCommonLineSearch/src/X86LINUX64/.Depend
index 5cc8583..992e100 100644 (file)
--- a/src/Tools/rec3d/mrcImageCommonLineSearch/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/mrcImageCommonLineSearch/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCommonLineSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCommonLineSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageCommonLineSearch.o: mrcImageCommonLineSearch.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageCommonLineSearch.o: mrcImageCommonLineSearch.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageCommonLineSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/lmrcImageCommonLine.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/mrcImageInverseRadonTransform/src/X86LINUX64/.Depend b/src/Tools/rec3d/mrcImageInverseRadonTransform/src/X86LINUX64/.Depend
index cc37a8c..8e9ad70 100644 (file)
--- a/src/Tools/rec3d/mrcImageInverseRadonTransform/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/mrcImageInverseRadonTransform/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageInverseRadonTransform.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageInverseRadonTransform.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageInverseRadonTransform.o: mrcImageInverseRadonTransform.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,29 +83,31 @@ mrcImageInverseRadonTransform.o: mrcImageInverseRadonTransform.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageInverseRadonTransform.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -110,14 +115,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/mrcImageOrientationSearch/src/X86LINUX64/.Depend b/src/Tools/rec3d/mrcImageOrientationSearch/src/X86LINUX64/.Depend
index 352beda..d645ae9 100644 (file)
--- a/src/Tools/rec3d/mrcImageOrientationSearch/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/mrcImageOrientationSearch/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOrientationSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOrientationSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageOrientationSearch.o: mrcImageOrientationSearch.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,31 +83,33 @@ mrcImageOrientationSearch.o: mrcImageOrientationSearch.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOrientationSearch.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/lCommonLineCalculation.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -112,14 +117,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/mrcImageOrientationSearchByHigherSelection/src/X86LINUX64/.Depend b/src/Tools/rec3d/mrcImageOrientationSearchByHigherSelection/src/X86LINUX64/.Depend
index b4fb615..e2882ad 100644 (file)
--- a/src/Tools/rec3d/mrcImageOrientationSearchByHigherSelection/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/mrcImageOrientationSearchByHigherSelection/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOrientationSearchByHigherSelection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOrientationSearchByHigherSelection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ mrcImageOrientationSearchByHigherSelection.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,25 +84,26 @@ mrcImageOrientationSearchByHigherSelection.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOrientationSearchByHigherSelection.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -107,14 +111,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/mrcImageOrientationSearchByHybridization/src/X86LINUX64/.Depend b/src/Tools/rec3d/mrcImageOrientationSearchByHybridization/src/X86LINUX64/.Depend
index 873b79c..57044f0 100644 (file)
--- a/src/Tools/rec3d/mrcImageOrientationSearchByHybridization/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/mrcImageOrientationSearchByHybridization/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOrientationSearchByHybridization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOrientationSearchByHybridization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,14 +65,15 @@ mrcImageOrientationSearchByHybridization.o: \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -81,27 +84,29 @@ mrcImageOrientationSearchByHybridization.o: \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOrientationSearchByHybridization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/mrcImageOrientationSearchBySimultaneousMinimization/src/X86LINUX64/.Depend b/src/Tools/rec3d/mrcImageOrientationSearchBySimultaneousMinimization/src/X86LINUX64/.Depend
index 8503951..dd442f4 100644 (file)
--- a/src/Tools/rec3d/mrcImageOrientationSearchBySimultaneousMinimization/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/mrcImageOrientationSearchBySimultaneousMinimization/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOrientationSearchBySimultaneousMinimization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOrientationSearchBySimultaneousMinimization.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -63,21 +65,22 @@ mrcImageOrientationSearchBySimultaneousMinimization.o: \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -94,6 +97,7 @@ mrcImageOrientationSearchBySimultaneousMinimization.o: \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/lmrcImageOrientationSearchBySimultaneousMinimization.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -104,14 +108,15 @@ mrcImageOrientationSearchBySimultaneousMinimization.o: \
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -119,14 +124,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/mrcImageRadonTransform/src/X86LINUX64/.Depend b/src/Tools/rec3d/mrcImageRadonTransform/src/X86LINUX64/.Depend
index ec4608e..1888507 100644 (file)
--- a/src/Tools/rec3d/mrcImageRadonTransform/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/mrcImageRadonTransform/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRadonTransform.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRadonTransform.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcImageRadonTransform.o: mrcImageRadonTransform.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,28 +83,30 @@ mrcImageRadonTransform.o: mrcImageRadonTransform.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageRadonTransform.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -109,14 +114,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/rec3d/mrcRadon2Dto3D/src/X86LINUX64/.Depend b/src/Tools/rec3d/mrcRadon2Dto3D/src/X86LINUX64/.Depend
index c6a6c6b..655f792 100644 (file)
--- a/src/Tools/rec3d/mrcRadon2Dto3D/src/X86LINUX64/.Depend
+++ b/src/Tools/rec3d/mrcRadon2Dto3D/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRadon2Dto3D.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRadon2Dto3D.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ mrcRadon2Dto3D.o: mrcRadon2Dto3D.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,12 +83,12 @@ mrcRadon2Dto3D.o: mrcRadon2Dto3D.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcRadon2Dto3D.h /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
@@ -93,20 +96,22 @@ mrcRadon2Dto3D.o: mrcRadon2Dto3D.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/lmrcImageRhoFiltering.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -114,14 +119,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/simulation/energyTransferModelCheck/src/X86LINUX64/.Depend b/src/Tools/simulation/energyTransferModelCheck/src/X86LINUX64/.Depend
index fc73501..14a2d92 100644 (file)
--- a/src/Tools/simulation/energyTransferModelCheck/src/X86LINUX64/.Depend
+++ b/src/Tools/simulation/energyTransferModelCheck/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/energyTransferModelCheck.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,26 +51,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/energyTransferModelCheck.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -76,14 +79,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/simulation/energyTransferModelResultCheck/src/X86LINUX64/.Depend b/src/Tools/simulation/energyTransferModelResultCheck/src/X86LINUX64/.Depend
index 85ce2de..22033ec 100644 (file)
--- a/src/Tools/simulation/energyTransferModelResultCheck/src/X86LINUX64/.Depend
+++ b/src/Tools/simulation/energyTransferModelResultCheck/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,12 +20,12 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/energyTransferModelResultCheck.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -32,14 +33,15 @@ energyTransferModelResultCheck.o: energyTransferModelResultCheck.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -50,30 +52,32 @@ energyTransferModelResultCheck.o: energyTransferModelResultCheck.c \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/energyTransferModelResultCheck.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/lFRET.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -84,26 +88,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/energyTransferModelResultCheck.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -111,14 +116,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/simulation/muscleSimulation/src/X86LINUX64/.Depend b/src/Tools/simulation/muscleSimulation/src/X86LINUX64/.Depend
index d8e0df4..e53f3e0 100644 (file)
--- a/src/Tools/simulation/muscleSimulation/src/X86LINUX64/.Depend
+++ b/src/Tools/simulation/muscleSimulation/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/muscleSimulation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/muscleSimulation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ muscleSimulation.o: muscleSimulation.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,24 +83,25 @@ muscleSimulation.o: muscleSimulation.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/muscleSimulation.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Random.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/transform/Descartes2Polar/src/X86LINUX64/.Depend b/src/Tools/transform/Descartes2Polar/src/X86LINUX64/.Depend
index b62ccc3..034c303 100644 (file)
--- a/src/Tools/transform/Descartes2Polar/src/X86LINUX64/.Depend
+++ b/src/Tools/transform/Descartes2Polar/src/X86LINUX64/.Depend
@@ -2,14 +2,15 @@ Descartes2Polar.o: Descartes2Polar.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -20,24 +21,25 @@ Descartes2Polar.o: Descartes2Polar.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/Descartes2Polar.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/lDescartesIntoPolar.h
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -48,26 +50,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/Descartes2Polar.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,26 +81,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/Descartes2Polar.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/transform/Polar2Descartes/src/X86LINUX64/.Depend b/src/Tools/transform/Polar2Descartes/src/X86LINUX64/.Depend
index daf3b6e..a133138 100644 (file)
--- a/src/Tools/transform/Polar2Descartes/src/X86LINUX64/.Depend
+++ b/src/Tools/transform/Polar2Descartes/src/X86LINUX64/.Depend
@@ -2,14 +2,15 @@ Polar2Descartes.o: Polar2Descartes.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -20,24 +21,25 @@ Polar2Descartes.o: Polar2Descartes.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/Polar2Descartes.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/lDescartesIntoPolar.h
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -48,26 +50,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/Polar2Descartes.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -78,26 +81,27 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/Polar2Descartes.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -105,14 +109,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/transform/pointAffineTransform/src/X86LINUX64/.Depend b/src/Tools/transform/pointAffineTransform/src/X86LINUX64/.Depend
index b4d807e..fdd27d4 100644 (file)
--- a/src/Tools/transform/pointAffineTransform/src/X86LINUX64/.Depend
+++ b/src/Tools/transform/pointAffineTransform/src/X86LINUX64/.Depend
@@ -1,14 +1,15 @@
 argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -19,26 +20,27 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pointAffineTransform.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -49,12 +51,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pointAffineTransform.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
@@ -62,14 +64,15 @@ pointAffineTransform.o: pointAffineTransform.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
@@ -80,26 +83,28 @@ pointAffineTransform.o: pointAffineTransform.c /usr/include/stdio.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/pointAffineTransform.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/limits.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include-fixed/syslimits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/float.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
@@ -107,14 +112,15 @@ usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
 util.o: util.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stddef.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib64/gcc/x86_64-suse-linux/4.4/include/stdarg.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \

diff --git a/src/Tools/vectorImage/vectorImageNearestNeighborMethod/src/X86LINUX64/.Depend b/src/Tools/vectorImage/vectorImageNearestNeighborMethod/src/X86LINUX64/.Depend
index 9c5f123..6c1af7b 100644 (file)
--- a/src/Tools/vectorImage/vectorImageNearestNeighborMethod/src/X86LINUX64/.Depend
+++ b/src/Tools/vectorImage/vectorImageNearestNeighborMethod/src/X86LINUX64/.Depend
@@ -212,3 +212,40 @@ vectorImageNearestNeighborMethod.o: vectorImageNearestNeighborMethod.cc \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  ../inc/vectorImageNearestNeighborMethod.h
+vectorImageNearestNeighborMethod.o: vectorImageNearestNeighborMethod.cc \
+ /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/File.h \
+ ../inc/config.h ../inc/../inc/vectorImageNearestNeighborMethod.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/include/float.h \
+ /home/people/tacyas/Eos/include/Memory.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ ../inc/vectorImageNearestNeighborMethod.h

diff --git a/util/X86LINUX64/bin/fftw-wisdom-to-conf b/util/X86LINUX64/bin/fftw-wisdom-to-conf
index af1fbf3..49d8bab 100755 (executable)
--- a/util/X86LINUX64/bin/fftw-wisdom-to-conf
+++ b/util/X86LINUX64/bin/fftw-wisdom-to-conf
@@ -14,10 +14,10 @@ fi
 
 if test "x$1" = "x--version" || test "x$1" = "x-V"; then
     cat <<EOF
-fftw-wisdom-to-conf from FFTW version 3.2.2
+fftw-wisdom-to-conf from FFTW version 3.3.3
 
-Copyright (c) 2003, 2007-8 Matteo Frigo
-Copyright (c) 2003, 2007-8 Massachusetts Institute of Technology
+Copyright (c) 2003, 2007-11 Matteo Frigo
+Copyright (c) 2003, 2007-11 Massachusetts Institute of Technology
 
 This program is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
@@ -31,7 +31,7 @@ GNU General Public License for more details.
 
 You should have received a copy of the GNU General Public License
 along with this program; if not, write to the Free Software
-Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA    
+Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA    
 EOF
     exit 0
 fi
@@ -39,7 +39,7 @@ fi
 read preamble fftw_wisdom
 
 case "$preamble $fftw_wisdom" in
-       \(fftw-3.2.2\ *_wisdom)
+       \(fftw-3.3.3\ *_wisdom)
                prefix=`echo $fftw_wisdom | cut -d_ -f1`_
                ;;
        *)
@@ -49,7 +49,7 @@ case "$preamble $fftw_wisdom" in
 esac
 
 cat <<EOF
-/* Automatically generated by fftw-wisdom-to-conf from fftw 3.2.2.
+/* Automatically generated by fftw-wisdom-to-conf from fftw 3.3.3.
    DO NOT EDIT!  (Unless you really, really want to.  Then it's okay.) */
 void ${prefix}configure_planner(void *plnr)
 {

diff --git a/util/X86LINUX64/bin/fftwf-wisdom b/util/X86LINUX64/bin/fftwf-wisdom
index 91594dc..56f501e 100755 (executable)
Binary files a/util/X86LINUX64/bin/fftwf-wisdom and b/util/X86LINUX64/bin/fftwf-wisdom differ

diff --git a/util/X86LINUX64/bin/gsl-config b/util/X86LINUX64/bin/gsl-config
new file mode 100755 (executable)
index 0000000..396720e
--- /dev/null
+++ b/util/X86LINUX64/bin/gsl-config
@@ -0,0 +1,80 @@
+#! /bin/sh
+
+prefix=/home/people/tacyas/Eos/util/X86LINUX64
+exec_prefix=/home/people/tacyas/Eos/util/X86LINUX64
+includedir=/home/people/tacyas/Eos/util/X86LINUX64/include
+
+usage()
+{
+    cat <<EOF
+Usage: gsl-config [OPTION]
+
+Known values for OPTION are:
+
+  --prefix             show GSL installation prefix 
+  --libs               print library linking information, with cblas
+  --libs-without-cblas print library linking information, without cblas
+  --cflags             print pre-processor and compiler flags
+  --help               display this help and exit
+  --version            output version information
+
+An external CBLAS library can be specified using the GSL_CBLAS_LIB
+environment variable. The GSL CBLAS library is used by default.
+
+EOF
+
+    exit $1
+}
+
+if test $# -eq 0; then
+    usage 1
+fi
+
+cflags=false
+libs=false
+
+while test $# -gt 0; do
+    case "$1" in
+    -*=*) optarg=`echo "$1" | sed 's/[-_a-zA-Z0-9]*=//'` ;;
+    *) optarg= ;;
+    esac
+
+    case "$1" in
+    --prefix=*)
+       prefix=$optarg
+       ;;
+
+    --prefix)
+       echo $prefix
+       ;;
+
+    --version)
+       echo 1.15
+       exit 0
+       ;;
+
+    --help)
+       usage 0
+       ;;
+
+    --cflags)
+               echo -I/home/people/tacyas/Eos/util/X86LINUX64/include 
+               ;;
+
+    --libs)
+        : ${GSL_CBLAS_LIB=-lgslcblas}
+       echo -L/home/people/tacyas/Eos/util/X86LINUX64/lib -lgsl $GSL_CBLAS_LIB -lm
+               ;;
+
+    --libs-without-cblas)
+       echo -L/home/people/tacyas/Eos/util/X86LINUX64/lib -lgsl -lm
+               ;;
+    *)
+       usage
+       exit 1
+       ;;
+    esac
+    shift
+done
+
+exit 0

diff --git a/util/X86LINUX64/bin/gsl-histogram b/util/X86LINUX64/bin/gsl-histogram
new file mode 100755 (executable)
index 0000000..a502a91
Binary files /dev/null and b/util/X86LINUX64/bin/gsl-histogram differ

diff --git a/util/X86LINUX64/bin/gsl-randist b/util/X86LINUX64/bin/gsl-randist
new file mode 100755 (executable)
index 0000000..8819e2a
Binary files /dev/null and b/util/X86LINUX64/bin/gsl-randist differ

diff --git a/util/X86LINUX64/include/fftw3.f b/util/X86LINUX64/include/fftw3.f
index 03bacdf..72d1aaf 100644 (file)
--- a/util/X86LINUX64/include/fftw3.f
+++ b/util/X86LINUX64/include/fftw3.f
@@ -40,6 +40,8 @@
       PARAMETER (FFTW_PATIENT=32)
       INTEGER FFTW_ESTIMATE
       PARAMETER (FFTW_ESTIMATE=64)
+      INTEGER FFTW_WISDOM_ONLY
+      PARAMETER (FFTW_WISDOM_ONLY=2097152)
       INTEGER FFTW_ESTIMATE_PATIENT
       PARAMETER (FFTW_ESTIMATE_PATIENT=128)
       INTEGER FFTW_BELIEVE_PCOST
@@ -68,5 +70,3 @@
       PARAMETER (FFTW_NO_FIXED_RADIX_LARGE_N=524288)
       INTEGER FFTW_ALLOW_PRUNING
       PARAMETER (FFTW_ALLOW_PRUNING=1048576)
-      INTEGER FFTW_WISDOM_ONLY
-      PARAMETER (FFTW_WISDOM_ONLY=2097152)

diff --git a/util/X86LINUX64/include/fftw3.f03 b/util/X86LINUX64/include/fftw3.f03
new file mode 100644 (file)
index 0000000..ac2afe5
--- /dev/null
+++ b/util/X86LINUX64/include/fftw3.f03
@@ -0,0 +1,1226 @@
+! Generated automatically.  DO NOT EDIT!
+
+  integer, parameter :: C_FFTW_R2R_KIND = C_INT32_T
+
+  integer(C_INT), parameter :: FFTW_R2HC = 0
+  integer(C_INT), parameter :: FFTW_HC2R = 1
+  integer(C_INT), parameter :: FFTW_DHT = 2
+  integer(C_INT), parameter :: FFTW_REDFT00 = 3
+  integer(C_INT), parameter :: FFTW_REDFT01 = 4
+  integer(C_INT), parameter :: FFTW_REDFT10 = 5
+  integer(C_INT), parameter :: FFTW_REDFT11 = 6
+  integer(C_INT), parameter :: FFTW_RODFT00 = 7
+  integer(C_INT), parameter :: FFTW_RODFT01 = 8
+  integer(C_INT), parameter :: FFTW_RODFT10 = 9
+  integer(C_INT), parameter :: FFTW_RODFT11 = 10
+  integer(C_INT), parameter :: FFTW_FORWARD = -1
+  integer(C_INT), parameter :: FFTW_BACKWARD = +1
+  integer(C_INT), parameter :: FFTW_MEASURE = 0
+  integer(C_INT), parameter :: FFTW_DESTROY_INPUT = 1
+  integer(C_INT), parameter :: FFTW_UNALIGNED = 2
+  integer(C_INT), parameter :: FFTW_CONSERVE_MEMORY = 4
+  integer(C_INT), parameter :: FFTW_EXHAUSTIVE = 8
+  integer(C_INT), parameter :: FFTW_PRESERVE_INPUT = 16
+  integer(C_INT), parameter :: FFTW_PATIENT = 32
+  integer(C_INT), parameter :: FFTW_ESTIMATE = 64
+  integer(C_INT), parameter :: FFTW_WISDOM_ONLY = 2097152
+  integer(C_INT), parameter :: FFTW_ESTIMATE_PATIENT = 128
+  integer(C_INT), parameter :: FFTW_BELIEVE_PCOST = 256
+  integer(C_INT), parameter :: FFTW_NO_DFT_R2HC = 512
+  integer(C_INT), parameter :: FFTW_NO_NONTHREADED = 1024
+  integer(C_INT), parameter :: FFTW_NO_BUFFERING = 2048
+  integer(C_INT), parameter :: FFTW_NO_INDIRECT_OP = 4096
+  integer(C_INT), parameter :: FFTW_ALLOW_LARGE_GENERIC = 8192
+  integer(C_INT), parameter :: FFTW_NO_RANK_SPLITS = 16384
+  integer(C_INT), parameter :: FFTW_NO_VRANK_SPLITS = 32768
+  integer(C_INT), parameter :: FFTW_NO_VRECURSE = 65536
+  integer(C_INT), parameter :: FFTW_NO_SIMD = 131072
+  integer(C_INT), parameter :: FFTW_NO_SLOW = 262144
+  integer(C_INT), parameter :: FFTW_NO_FIXED_RADIX_LARGE_N = 524288
+  integer(C_INT), parameter :: FFTW_ALLOW_PRUNING = 1048576
+
+  type, bind(C) :: fftw_iodim
+     integer(C_INT) n, is, os
+  end type fftw_iodim
+  type, bind(C) :: fftw_iodim64
+     integer(C_INTPTR_T) n, is, os
+  end type fftw_iodim64
+
+  interface
+    type(C_PTR) function fftw_plan_dft(rank,n,in,out,sign,flags) bind(C, name='fftw_plan_dft')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftw_plan_dft
+    
+    type(C_PTR) function fftw_plan_dft_1d(n,in,out,sign,flags) bind(C, name='fftw_plan_dft_1d')
+      import
+      integer(C_INT), value :: n
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftw_plan_dft_1d
+    
+    type(C_PTR) function fftw_plan_dft_2d(n0,n1,in,out,sign,flags) bind(C, name='fftw_plan_dft_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftw_plan_dft_2d
+    
+    type(C_PTR) function fftw_plan_dft_3d(n0,n1,n2,in,out,sign,flags) bind(C, name='fftw_plan_dft_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftw_plan_dft_3d
+    
+    type(C_PTR) function fftw_plan_many_dft(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,sign,flags) &
+                         bind(C, name='fftw_plan_many_dft')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftw_plan_many_dft
+    
+    type(C_PTR) function fftw_plan_guru_dft(rank,dims,howmany_rank,howmany_dims,in,out,sign,flags) &
+                         bind(C, name='fftw_plan_guru_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftw_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftw_iodim), dimension(*), intent(in) :: howmany_dims
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftw_plan_guru_dft
+    
+    type(C_PTR) function fftw_plan_guru_split_dft(rank,dims,howmany_rank,howmany_dims,ri,ii,ro,io,flags) &
+                         bind(C, name='fftw_plan_guru_split_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftw_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftw_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_DOUBLE), dimension(*), intent(out) :: ri
+      real(C_DOUBLE), dimension(*), intent(out) :: ii
+      real(C_DOUBLE), dimension(*), intent(out) :: ro
+      real(C_DOUBLE), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftw_plan_guru_split_dft
+    
+    type(C_PTR) function fftw_plan_guru64_dft(rank,dims,howmany_rank,howmany_dims,in,out,sign,flags) &
+                         bind(C, name='fftw_plan_guru64_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftw_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftw_iodim64), dimension(*), intent(in) :: howmany_dims
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftw_plan_guru64_dft
+    
+    type(C_PTR) function fftw_plan_guru64_split_dft(rank,dims,howmany_rank,howmany_dims,ri,ii,ro,io,flags) &
+                         bind(C, name='fftw_plan_guru64_split_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftw_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftw_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_DOUBLE), dimension(*), intent(out) :: ri
+      real(C_DOUBLE), dimension(*), intent(out) :: ii
+      real(C_DOUBLE), dimension(*), intent(out) :: ro
+      real(C_DOUBLE), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftw_plan_guru64_split_dft
+    
+    subroutine fftw_execute_dft(p,in,out) bind(C, name='fftw_execute_dft')
+      import
+      type(C_PTR), value :: p
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(inout) :: in
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+    end subroutine fftw_execute_dft
+    
+    subroutine fftw_execute_split_dft(p,ri,ii,ro,io) bind(C, name='fftw_execute_split_dft')
+      import
+      type(C_PTR), value :: p
+      real(C_DOUBLE), dimension(*), intent(inout) :: ri
+      real(C_DOUBLE), dimension(*), intent(inout) :: ii
+      real(C_DOUBLE), dimension(*), intent(out) :: ro
+      real(C_DOUBLE), dimension(*), intent(out) :: io
+    end subroutine fftw_execute_split_dft
+    
+    type(C_PTR) function fftw_plan_many_dft_r2c(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,flags) &
+                         bind(C, name='fftw_plan_many_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_INT), value :: flags
+    end function fftw_plan_many_dft_r2c
+    
+    type(C_PTR) function fftw_plan_dft_r2c(rank,n,in,out,flags) bind(C, name='fftw_plan_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftw_plan_dft_r2c
+    
+    type(C_PTR) function fftw_plan_dft_r2c_1d(n,in,out,flags) bind(C, name='fftw_plan_dft_r2c_1d')
+      import
+      integer(C_INT), value :: n
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftw_plan_dft_r2c_1d
+    
+    type(C_PTR) function fftw_plan_dft_r2c_2d(n0,n1,in,out,flags) bind(C, name='fftw_plan_dft_r2c_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftw_plan_dft_r2c_2d
+    
+    type(C_PTR) function fftw_plan_dft_r2c_3d(n0,n1,n2,in,out,flags) bind(C, name='fftw_plan_dft_r2c_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftw_plan_dft_r2c_3d
+    
+    type(C_PTR) function fftw_plan_many_dft_c2r(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,flags) &
+                         bind(C, name='fftw_plan_many_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_INT), value :: flags
+    end function fftw_plan_many_dft_c2r
+    
+    type(C_PTR) function fftw_plan_dft_c2r(rank,n,in,out,flags) bind(C, name='fftw_plan_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftw_plan_dft_c2r
+    
+    type(C_PTR) function fftw_plan_dft_c2r_1d(n,in,out,flags) bind(C, name='fftw_plan_dft_c2r_1d')
+      import
+      integer(C_INT), value :: n
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftw_plan_dft_c2r_1d
+    
+    type(C_PTR) function fftw_plan_dft_c2r_2d(n0,n1,in,out,flags) bind(C, name='fftw_plan_dft_c2r_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftw_plan_dft_c2r_2d
+    
+    type(C_PTR) function fftw_plan_dft_c2r_3d(n0,n1,n2,in,out,flags) bind(C, name='fftw_plan_dft_c2r_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftw_plan_dft_c2r_3d
+    
+    type(C_PTR) function fftw_plan_guru_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftw_plan_guru_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftw_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftw_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftw_plan_guru_dft_r2c
+    
+    type(C_PTR) function fftw_plan_guru_dft_c2r(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftw_plan_guru_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftw_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftw_iodim), dimension(*), intent(in) :: howmany_dims
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftw_plan_guru_dft_c2r
+    
+    type(C_PTR) function fftw_plan_guru_split_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,ro,io,flags) &
+                         bind(C, name='fftw_plan_guru_split_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftw_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftw_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: ro
+      real(C_DOUBLE), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftw_plan_guru_split_dft_r2c
+    
+    type(C_PTR) function fftw_plan_guru_split_dft_c2r(rank,dims,howmany_rank,howmany_dims,ri,ii,out,flags) &
+                         bind(C, name='fftw_plan_guru_split_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftw_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftw_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_DOUBLE), dimension(*), intent(out) :: ri
+      real(C_DOUBLE), dimension(*), intent(out) :: ii
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftw_plan_guru_split_dft_c2r
+    
+    type(C_PTR) function fftw_plan_guru64_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftw_plan_guru64_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftw_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftw_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftw_plan_guru64_dft_r2c
+    
+    type(C_PTR) function fftw_plan_guru64_dft_c2r(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftw_plan_guru64_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftw_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftw_iodim64), dimension(*), intent(in) :: howmany_dims
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftw_plan_guru64_dft_c2r
+    
+    type(C_PTR) function fftw_plan_guru64_split_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,ro,io,flags) &
+                         bind(C, name='fftw_plan_guru64_split_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftw_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftw_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: ro
+      real(C_DOUBLE), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftw_plan_guru64_split_dft_r2c
+    
+    type(C_PTR) function fftw_plan_guru64_split_dft_c2r(rank,dims,howmany_rank,howmany_dims,ri,ii,out,flags) &
+                         bind(C, name='fftw_plan_guru64_split_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftw_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftw_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_DOUBLE), dimension(*), intent(out) :: ri
+      real(C_DOUBLE), dimension(*), intent(out) :: ii
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftw_plan_guru64_split_dft_c2r
+    
+    subroutine fftw_execute_dft_r2c(p,in,out) bind(C, name='fftw_execute_dft_r2c')
+      import
+      type(C_PTR), value :: p
+      real(C_DOUBLE), dimension(*), intent(inout) :: in
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+    end subroutine fftw_execute_dft_r2c
+    
+    subroutine fftw_execute_dft_c2r(p,in,out) bind(C, name='fftw_execute_dft_c2r')
+      import
+      type(C_PTR), value :: p
+      complex(C_DOUBLE_COMPLEX), dimension(*), intent(inout) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+    end subroutine fftw_execute_dft_c2r
+    
+    subroutine fftw_execute_split_dft_r2c(p,in,ro,io) bind(C, name='fftw_execute_split_dft_r2c')
+      import
+      type(C_PTR), value :: p
+      real(C_DOUBLE), dimension(*), intent(inout) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: ro
+      real(C_DOUBLE), dimension(*), intent(out) :: io
+    end subroutine fftw_execute_split_dft_r2c
+    
+    subroutine fftw_execute_split_dft_c2r(p,ri,ii,out) bind(C, name='fftw_execute_split_dft_c2r')
+      import
+      type(C_PTR), value :: p
+      real(C_DOUBLE), dimension(*), intent(inout) :: ri
+      real(C_DOUBLE), dimension(*), intent(inout) :: ii
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+    end subroutine fftw_execute_split_dft_c2r
+    
+    type(C_PTR) function fftw_plan_many_r2r(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,kind,flags) &
+                         bind(C, name='fftw_plan_many_r2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftw_plan_many_r2r
+    
+    type(C_PTR) function fftw_plan_r2r(rank,n,in,out,kind,flags) bind(C, name='fftw_plan_r2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftw_plan_r2r
+    
+    type(C_PTR) function fftw_plan_r2r_1d(n,in,out,kind,flags) bind(C, name='fftw_plan_r2r_1d')
+      import
+      integer(C_INT), value :: n
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), value :: kind
+      integer(C_INT), value :: flags
+    end function fftw_plan_r2r_1d
+    
+    type(C_PTR) function fftw_plan_r2r_2d(n0,n1,in,out,kind0,kind1,flags) bind(C, name='fftw_plan_r2r_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), value :: kind0
+      integer(C_FFTW_R2R_KIND), value :: kind1
+      integer(C_INT), value :: flags
+    end function fftw_plan_r2r_2d
+    
+    type(C_PTR) function fftw_plan_r2r_3d(n0,n1,n2,in,out,kind0,kind1,kind2,flags) bind(C, name='fftw_plan_r2r_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), value :: kind0
+      integer(C_FFTW_R2R_KIND), value :: kind1
+      integer(C_FFTW_R2R_KIND), value :: kind2
+      integer(C_INT), value :: flags
+    end function fftw_plan_r2r_3d
+    
+    type(C_PTR) function fftw_plan_guru_r2r(rank,dims,howmany_rank,howmany_dims,in,out,kind,flags) &
+                         bind(C, name='fftw_plan_guru_r2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftw_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftw_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftw_plan_guru_r2r
+    
+    type(C_PTR) function fftw_plan_guru64_r2r(rank,dims,howmany_rank,howmany_dims,in,out,kind,flags) &
+                         bind(C, name='fftw_plan_guru64_r2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftw_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftw_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_DOUBLE), dimension(*), intent(out) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftw_plan_guru64_r2r
+    
+    subroutine fftw_execute_r2r(p,in,out) bind(C, name='fftw_execute_r2r')
+      import
+      type(C_PTR), value :: p
+      real(C_DOUBLE), dimension(*), intent(inout) :: in
+      real(C_DOUBLE), dimension(*), intent(out) :: out
+    end subroutine fftw_execute_r2r
+    
+    subroutine fftw_destroy_plan(p) bind(C, name='fftw_destroy_plan')
+      import
+      type(C_PTR), value :: p
+    end subroutine fftw_destroy_plan
+    
+    subroutine fftw_forget_wisdom() bind(C, name='fftw_forget_wisdom')
+      import
+    end subroutine fftw_forget_wisdom
+    
+    subroutine fftw_cleanup() bind(C, name='fftw_cleanup')
+      import
+    end subroutine fftw_cleanup
+    
+    subroutine fftw_set_timelimit(t) bind(C, name='fftw_set_timelimit')
+      import
+      real(C_DOUBLE), value :: t
+    end subroutine fftw_set_timelimit
+    
+    subroutine fftw_plan_with_nthreads(nthreads) bind(C, name='fftw_plan_with_nthreads')
+      import
+      integer(C_INT), value :: nthreads
+    end subroutine fftw_plan_with_nthreads
+    
+    integer(C_INT) function fftw_init_threads() bind(C, name='fftw_init_threads')
+      import
+    end function fftw_init_threads
+    
+    subroutine fftw_cleanup_threads() bind(C, name='fftw_cleanup_threads')
+      import
+    end subroutine fftw_cleanup_threads
+    
+    integer(C_INT) function fftw_export_wisdom_to_filename(filename) bind(C, name='fftw_export_wisdom_to_filename')
+      import
+      character(C_CHAR), dimension(*), intent(in) :: filename
+    end function fftw_export_wisdom_to_filename
+    
+    subroutine fftw_export_wisdom_to_file(output_file) bind(C, name='fftw_export_wisdom_to_file')
+      import
+      type(C_PTR), value :: output_file
+    end subroutine fftw_export_wisdom_to_file
+    
+    type(C_PTR) function fftw_export_wisdom_to_string() bind(C, name='fftw_export_wisdom_to_string')
+      import
+    end function fftw_export_wisdom_to_string
+    
+    subroutine fftw_export_wisdom(write_char,data) bind(C, name='fftw_export_wisdom')
+      import
+      type(C_FUNPTR), value :: write_char
+      type(C_PTR), value :: data
+    end subroutine fftw_export_wisdom
+    
+    integer(C_INT) function fftw_import_system_wisdom() bind(C, name='fftw_import_system_wisdom')
+      import
+    end function fftw_import_system_wisdom
+    
+    integer(C_INT) function fftw_import_wisdom_from_filename(filename) bind(C, name='fftw_import_wisdom_from_filename')
+      import
+      character(C_CHAR), dimension(*), intent(in) :: filename
+    end function fftw_import_wisdom_from_filename
+    
+    integer(C_INT) function fftw_import_wisdom_from_file(input_file) bind(C, name='fftw_import_wisdom_from_file')
+      import
+      type(C_PTR), value :: input_file
+    end function fftw_import_wisdom_from_file
+    
+    integer(C_INT) function fftw_import_wisdom_from_string(input_string) bind(C, name='fftw_import_wisdom_from_string')
+      import
+      character(C_CHAR), dimension(*), intent(in) :: input_string
+    end function fftw_import_wisdom_from_string
+    
+    integer(C_INT) function fftw_import_wisdom(read_char,data) bind(C, name='fftw_import_wisdom')
+      import
+      type(C_FUNPTR), value :: read_char
+      type(C_PTR), value :: data
+    end function fftw_import_wisdom
+    
+    subroutine fftw_fprint_plan(p,output_file) bind(C, name='fftw_fprint_plan')
+      import
+      type(C_PTR), value :: p
+      type(C_PTR), value :: output_file
+    end subroutine fftw_fprint_plan
+    
+    subroutine fftw_print_plan(p) bind(C, name='fftw_print_plan')
+      import
+      type(C_PTR), value :: p
+    end subroutine fftw_print_plan
+    
+    type(C_PTR) function fftw_malloc(n) bind(C, name='fftw_malloc')
+      import
+      integer(C_SIZE_T), value :: n
+    end function fftw_malloc
+    
+    type(C_PTR) function fftw_alloc_real(n) bind(C, name='fftw_alloc_real')
+      import
+      integer(C_SIZE_T), value :: n
+    end function fftw_alloc_real
+    
+    type(C_PTR) function fftw_alloc_complex(n) bind(C, name='fftw_alloc_complex')
+      import
+      integer(C_SIZE_T), value :: n
+    end function fftw_alloc_complex
+    
+    subroutine fftw_free(p) bind(C, name='fftw_free')
+      import
+      type(C_PTR), value :: p
+    end subroutine fftw_free
+    
+    subroutine fftw_flops(p,add,mul,fmas) bind(C, name='fftw_flops')
+      import
+      type(C_PTR), value :: p
+      real(C_DOUBLE), intent(out) :: add
+      real(C_DOUBLE), intent(out) :: mul
+      real(C_DOUBLE), intent(out) :: fmas
+    end subroutine fftw_flops
+    
+    real(C_DOUBLE) function fftw_estimate_cost(p) bind(C, name='fftw_estimate_cost')
+      import
+      type(C_PTR), value :: p
+    end function fftw_estimate_cost
+    
+    real(C_DOUBLE) function fftw_cost(p) bind(C, name='fftw_cost')
+      import
+      type(C_PTR), value :: p
+    end function fftw_cost
+    
+  end interface
+
+  type, bind(C) :: fftwf_iodim
+     integer(C_INT) n, is, os
+  end type fftwf_iodim
+  type, bind(C) :: fftwf_iodim64
+     integer(C_INTPTR_T) n, is, os
+  end type fftwf_iodim64
+
+  interface
+    type(C_PTR) function fftwf_plan_dft(rank,n,in,out,sign,flags) bind(C, name='fftwf_plan_dft')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwf_plan_dft
+    
+    type(C_PTR) function fftwf_plan_dft_1d(n,in,out,sign,flags) bind(C, name='fftwf_plan_dft_1d')
+      import
+      integer(C_INT), value :: n
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwf_plan_dft_1d
+    
+    type(C_PTR) function fftwf_plan_dft_2d(n0,n1,in,out,sign,flags) bind(C, name='fftwf_plan_dft_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwf_plan_dft_2d
+    
+    type(C_PTR) function fftwf_plan_dft_3d(n0,n1,n2,in,out,sign,flags) bind(C, name='fftwf_plan_dft_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwf_plan_dft_3d
+    
+    type(C_PTR) function fftwf_plan_many_dft(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,sign,flags) &
+                         bind(C, name='fftwf_plan_many_dft')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwf_plan_many_dft
+    
+    type(C_PTR) function fftwf_plan_guru_dft(rank,dims,howmany_rank,howmany_dims,in,out,sign,flags) &
+                         bind(C, name='fftwf_plan_guru_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftwf_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwf_iodim), dimension(*), intent(in) :: howmany_dims
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwf_plan_guru_dft
+    
+    type(C_PTR) function fftwf_plan_guru_split_dft(rank,dims,howmany_rank,howmany_dims,ri,ii,ro,io,flags) &
+                         bind(C, name='fftwf_plan_guru_split_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftwf_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwf_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_FLOAT), dimension(*), intent(out) :: ri
+      real(C_FLOAT), dimension(*), intent(out) :: ii
+      real(C_FLOAT), dimension(*), intent(out) :: ro
+      real(C_FLOAT), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftwf_plan_guru_split_dft
+    
+    type(C_PTR) function fftwf_plan_guru64_dft(rank,dims,howmany_rank,howmany_dims,in,out,sign,flags) &
+                         bind(C, name='fftwf_plan_guru64_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftwf_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwf_iodim64), dimension(*), intent(in) :: howmany_dims
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwf_plan_guru64_dft
+    
+    type(C_PTR) function fftwf_plan_guru64_split_dft(rank,dims,howmany_rank,howmany_dims,ri,ii,ro,io,flags) &
+                         bind(C, name='fftwf_plan_guru64_split_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftwf_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwf_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_FLOAT), dimension(*), intent(out) :: ri
+      real(C_FLOAT), dimension(*), intent(out) :: ii
+      real(C_FLOAT), dimension(*), intent(out) :: ro
+      real(C_FLOAT), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftwf_plan_guru64_split_dft
+    
+    subroutine fftwf_execute_dft(p,in,out) bind(C, name='fftwf_execute_dft')
+      import
+      type(C_PTR), value :: p
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(inout) :: in
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+    end subroutine fftwf_execute_dft
+    
+    subroutine fftwf_execute_split_dft(p,ri,ii,ro,io) bind(C, name='fftwf_execute_split_dft')
+      import
+      type(C_PTR), value :: p
+      real(C_FLOAT), dimension(*), intent(inout) :: ri
+      real(C_FLOAT), dimension(*), intent(inout) :: ii
+      real(C_FLOAT), dimension(*), intent(out) :: ro
+      real(C_FLOAT), dimension(*), intent(out) :: io
+    end subroutine fftwf_execute_split_dft
+    
+    type(C_PTR) function fftwf_plan_many_dft_r2c(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,flags) &
+                         bind(C, name='fftwf_plan_many_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_INT), value :: flags
+    end function fftwf_plan_many_dft_r2c
+    
+    type(C_PTR) function fftwf_plan_dft_r2c(rank,n,in,out,flags) bind(C, name='fftwf_plan_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwf_plan_dft_r2c
+    
+    type(C_PTR) function fftwf_plan_dft_r2c_1d(n,in,out,flags) bind(C, name='fftwf_plan_dft_r2c_1d')
+      import
+      integer(C_INT), value :: n
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwf_plan_dft_r2c_1d
+    
+    type(C_PTR) function fftwf_plan_dft_r2c_2d(n0,n1,in,out,flags) bind(C, name='fftwf_plan_dft_r2c_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwf_plan_dft_r2c_2d
+    
+    type(C_PTR) function fftwf_plan_dft_r2c_3d(n0,n1,n2,in,out,flags) bind(C, name='fftwf_plan_dft_r2c_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwf_plan_dft_r2c_3d
+    
+    type(C_PTR) function fftwf_plan_many_dft_c2r(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,flags) &
+                         bind(C, name='fftwf_plan_many_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_INT), value :: flags
+    end function fftwf_plan_many_dft_c2r
+    
+    type(C_PTR) function fftwf_plan_dft_c2r(rank,n,in,out,flags) bind(C, name='fftwf_plan_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwf_plan_dft_c2r
+    
+    type(C_PTR) function fftwf_plan_dft_c2r_1d(n,in,out,flags) bind(C, name='fftwf_plan_dft_c2r_1d')
+      import
+      integer(C_INT), value :: n
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwf_plan_dft_c2r_1d
+    
+    type(C_PTR) function fftwf_plan_dft_c2r_2d(n0,n1,in,out,flags) bind(C, name='fftwf_plan_dft_c2r_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwf_plan_dft_c2r_2d
+    
+    type(C_PTR) function fftwf_plan_dft_c2r_3d(n0,n1,n2,in,out,flags) bind(C, name='fftwf_plan_dft_c2r_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwf_plan_dft_c2r_3d
+    
+    type(C_PTR) function fftwf_plan_guru_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftwf_plan_guru_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftwf_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwf_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwf_plan_guru_dft_r2c
+    
+    type(C_PTR) function fftwf_plan_guru_dft_c2r(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftwf_plan_guru_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwf_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwf_iodim), dimension(*), intent(in) :: howmany_dims
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwf_plan_guru_dft_c2r
+    
+    type(C_PTR) function fftwf_plan_guru_split_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,ro,io,flags) &
+                         bind(C, name='fftwf_plan_guru_split_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftwf_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwf_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: ro
+      real(C_FLOAT), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftwf_plan_guru_split_dft_r2c
+    
+    type(C_PTR) function fftwf_plan_guru_split_dft_c2r(rank,dims,howmany_rank,howmany_dims,ri,ii,out,flags) &
+                         bind(C, name='fftwf_plan_guru_split_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwf_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwf_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_FLOAT), dimension(*), intent(out) :: ri
+      real(C_FLOAT), dimension(*), intent(out) :: ii
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwf_plan_guru_split_dft_c2r
+    
+    type(C_PTR) function fftwf_plan_guru64_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftwf_plan_guru64_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftwf_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwf_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwf_plan_guru64_dft_r2c
+    
+    type(C_PTR) function fftwf_plan_guru64_dft_c2r(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftwf_plan_guru64_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwf_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwf_iodim64), dimension(*), intent(in) :: howmany_dims
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwf_plan_guru64_dft_c2r
+    
+    type(C_PTR) function fftwf_plan_guru64_split_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,ro,io,flags) &
+                         bind(C, name='fftwf_plan_guru64_split_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftwf_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwf_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: ro
+      real(C_FLOAT), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftwf_plan_guru64_split_dft_r2c
+    
+    type(C_PTR) function fftwf_plan_guru64_split_dft_c2r(rank,dims,howmany_rank,howmany_dims,ri,ii,out,flags) &
+                         bind(C, name='fftwf_plan_guru64_split_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwf_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwf_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_FLOAT), dimension(*), intent(out) :: ri
+      real(C_FLOAT), dimension(*), intent(out) :: ii
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwf_plan_guru64_split_dft_c2r
+    
+    subroutine fftwf_execute_dft_r2c(p,in,out) bind(C, name='fftwf_execute_dft_r2c')
+      import
+      type(C_PTR), value :: p
+      real(C_FLOAT), dimension(*), intent(inout) :: in
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(out) :: out
+    end subroutine fftwf_execute_dft_r2c
+    
+    subroutine fftwf_execute_dft_c2r(p,in,out) bind(C, name='fftwf_execute_dft_c2r')
+      import
+      type(C_PTR), value :: p
+      complex(C_FLOAT_COMPLEX), dimension(*), intent(inout) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: out
+    end subroutine fftwf_execute_dft_c2r
+    
+    subroutine fftwf_execute_split_dft_r2c(p,in,ro,io) bind(C, name='fftwf_execute_split_dft_r2c')
+      import
+      type(C_PTR), value :: p
+      real(C_FLOAT), dimension(*), intent(inout) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: ro
+      real(C_FLOAT), dimension(*), intent(out) :: io
+    end subroutine fftwf_execute_split_dft_r2c
+    
+    subroutine fftwf_execute_split_dft_c2r(p,ri,ii,out) bind(C, name='fftwf_execute_split_dft_c2r')
+      import
+      type(C_PTR), value :: p
+      real(C_FLOAT), dimension(*), intent(inout) :: ri
+      real(C_FLOAT), dimension(*), intent(inout) :: ii
+      real(C_FLOAT), dimension(*), intent(out) :: out
+    end subroutine fftwf_execute_split_dft_c2r
+    
+    type(C_PTR) function fftwf_plan_many_r2r(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,kind,flags) &
+                         bind(C, name='fftwf_plan_many_r2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftwf_plan_many_r2r
+    
+    type(C_PTR) function fftwf_plan_r2r(rank,n,in,out,kind,flags) bind(C, name='fftwf_plan_r2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftwf_plan_r2r
+    
+    type(C_PTR) function fftwf_plan_r2r_1d(n,in,out,kind,flags) bind(C, name='fftwf_plan_r2r_1d')
+      import
+      integer(C_INT), value :: n
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), value :: kind
+      integer(C_INT), value :: flags
+    end function fftwf_plan_r2r_1d
+    
+    type(C_PTR) function fftwf_plan_r2r_2d(n0,n1,in,out,kind0,kind1,flags) bind(C, name='fftwf_plan_r2r_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), value :: kind0
+      integer(C_FFTW_R2R_KIND), value :: kind1
+      integer(C_INT), value :: flags
+    end function fftwf_plan_r2r_2d
+    
+    type(C_PTR) function fftwf_plan_r2r_3d(n0,n1,n2,in,out,kind0,kind1,kind2,flags) bind(C, name='fftwf_plan_r2r_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), value :: kind0
+      integer(C_FFTW_R2R_KIND), value :: kind1
+      integer(C_FFTW_R2R_KIND), value :: kind2
+      integer(C_INT), value :: flags
+    end function fftwf_plan_r2r_3d
+    
+    type(C_PTR) function fftwf_plan_guru_r2r(rank,dims,howmany_rank,howmany_dims,in,out,kind,flags) &
+                         bind(C, name='fftwf_plan_guru_r2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwf_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwf_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftwf_plan_guru_r2r
+    
+    type(C_PTR) function fftwf_plan_guru64_r2r(rank,dims,howmany_rank,howmany_dims,in,out,kind,flags) &
+                         bind(C, name='fftwf_plan_guru64_r2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwf_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwf_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_FLOAT), dimension(*), intent(out) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftwf_plan_guru64_r2r
+    
+    subroutine fftwf_execute_r2r(p,in,out) bind(C, name='fftwf_execute_r2r')
+      import
+      type(C_PTR), value :: p
+      real(C_FLOAT), dimension(*), intent(inout) :: in
+      real(C_FLOAT), dimension(*), intent(out) :: out
+    end subroutine fftwf_execute_r2r
+    
+    subroutine fftwf_destroy_plan(p) bind(C, name='fftwf_destroy_plan')
+      import
+      type(C_PTR), value :: p
+    end subroutine fftwf_destroy_plan
+    
+    subroutine fftwf_forget_wisdom() bind(C, name='fftwf_forget_wisdom')
+      import
+    end subroutine fftwf_forget_wisdom
+    
+    subroutine fftwf_cleanup() bind(C, name='fftwf_cleanup')
+      import
+    end subroutine fftwf_cleanup
+    
+    subroutine fftwf_set_timelimit(t) bind(C, name='fftwf_set_timelimit')
+      import
+      real(C_DOUBLE), value :: t
+    end subroutine fftwf_set_timelimit
+    
+    subroutine fftwf_plan_with_nthreads(nthreads) bind(C, name='fftwf_plan_with_nthreads')
+      import
+      integer(C_INT), value :: nthreads
+    end subroutine fftwf_plan_with_nthreads
+    
+    integer(C_INT) function fftwf_init_threads() bind(C, name='fftwf_init_threads')
+      import
+    end function fftwf_init_threads
+    
+    subroutine fftwf_cleanup_threads() bind(C, name='fftwf_cleanup_threads')
+      import
+    end subroutine fftwf_cleanup_threads
+    
+    integer(C_INT) function fftwf_export_wisdom_to_filename(filename) bind(C, name='fftwf_export_wisdom_to_filename')
+      import
+      character(C_CHAR), dimension(*), intent(in) :: filename
+    end function fftwf_export_wisdom_to_filename
+    
+    subroutine fftwf_export_wisdom_to_file(output_file) bind(C, name='fftwf_export_wisdom_to_file')
+      import
+      type(C_PTR), value :: output_file
+    end subroutine fftwf_export_wisdom_to_file
+    
+    type(C_PTR) function fftwf_export_wisdom_to_string() bind(C, name='fftwf_export_wisdom_to_string')
+      import
+    end function fftwf_export_wisdom_to_string
+    
+    subroutine fftwf_export_wisdom(write_char,data) bind(C, name='fftwf_export_wisdom')
+      import
+      type(C_FUNPTR), value :: write_char
+      type(C_PTR), value :: data
+    end subroutine fftwf_export_wisdom
+    
+    integer(C_INT) function fftwf_import_system_wisdom() bind(C, name='fftwf_import_system_wisdom')
+      import
+    end function fftwf_import_system_wisdom
+    
+    integer(C_INT) function fftwf_import_wisdom_from_filename(filename) bind(C, name='fftwf_import_wisdom_from_filename')
+      import
+      character(C_CHAR), dimension(*), intent(in) :: filename
+    end function fftwf_import_wisdom_from_filename
+    
+    integer(C_INT) function fftwf_import_wisdom_from_file(input_file) bind(C, name='fftwf_import_wisdom_from_file')
+      import
+      type(C_PTR), value :: input_file
+    end function fftwf_import_wisdom_from_file
+    
+    integer(C_INT) function fftwf_import_wisdom_from_string(input_string) bind(C, name='fftwf_import_wisdom_from_string')
+      import
+      character(C_CHAR), dimension(*), intent(in) :: input_string
+    end function fftwf_import_wisdom_from_string
+    
+    integer(C_INT) function fftwf_import_wisdom(read_char,data) bind(C, name='fftwf_import_wisdom')
+      import
+      type(C_FUNPTR), value :: read_char
+      type(C_PTR), value :: data
+    end function fftwf_import_wisdom
+    
+    subroutine fftwf_fprint_plan(p,output_file) bind(C, name='fftwf_fprint_plan')
+      import
+      type(C_PTR), value :: p
+      type(C_PTR), value :: output_file
+    end subroutine fftwf_fprint_plan
+    
+    subroutine fftwf_print_plan(p) bind(C, name='fftwf_print_plan')
+      import
+      type(C_PTR), value :: p
+    end subroutine fftwf_print_plan
+    
+    type(C_PTR) function fftwf_malloc(n) bind(C, name='fftwf_malloc')
+      import
+      integer(C_SIZE_T), value :: n
+    end function fftwf_malloc
+    
+    type(C_PTR) function fftwf_alloc_real(n) bind(C, name='fftwf_alloc_real')
+      import
+      integer(C_SIZE_T), value :: n
+    end function fftwf_alloc_real
+    
+    type(C_PTR) function fftwf_alloc_complex(n) bind(C, name='fftwf_alloc_complex')
+      import
+      integer(C_SIZE_T), value :: n
+    end function fftwf_alloc_complex
+    
+    subroutine fftwf_free(p) bind(C, name='fftwf_free')
+      import
+      type(C_PTR), value :: p
+    end subroutine fftwf_free
+    
+    subroutine fftwf_flops(p,add,mul,fmas) bind(C, name='fftwf_flops')
+      import
+      type(C_PTR), value :: p
+      real(C_DOUBLE), intent(out) :: add
+      real(C_DOUBLE), intent(out) :: mul
+      real(C_DOUBLE), intent(out) :: fmas
+    end subroutine fftwf_flops
+    
+    real(C_DOUBLE) function fftwf_estimate_cost(p) bind(C, name='fftwf_estimate_cost')
+      import
+      type(C_PTR), value :: p
+    end function fftwf_estimate_cost
+    
+    real(C_DOUBLE) function fftwf_cost(p) bind(C, name='fftwf_cost')
+      import
+      type(C_PTR), value :: p
+    end function fftwf_cost
+    
+  end interface

diff --git a/util/X86LINUX64/include/fftw3.h b/util/X86LINUX64/include/fftw3.h
index 6637303..58a2c73 100644 (file)
--- a/util/X86LINUX64/include/fftw3.h
+++ b/util/X86LINUX64/include/fftw3.h
@@ -1,6 +1,6 @@
 /*
- * Copyright (c) 2003, 2007-8 Matteo Frigo
- * Copyright (c) 2003, 2007-8 Massachusetts Institute of Technology
+ * Copyright (c) 2003, 2007-11 Matteo Frigo
+ * Copyright (c) 2003, 2007-11 Massachusetts Institute of Technology
  *
  * The following statement of license applies *only* to this header file,
  * and *not* to the other files distributed with FFTW or derived therefrom:
@@ -66,6 +66,7 @@ extern "C"
 #define FFTW_MANGLE_DOUBLE(name) FFTW_CONCAT(fftw_, name)
 #define FFTW_MANGLE_FLOAT(name) FFTW_CONCAT(fftwf_, name)
 #define FFTW_MANGLE_LONG_DOUBLE(name) FFTW_CONCAT(fftwl_, name)
+#define FFTW_MANGLE_QUAD(name) FFTW_CONCAT(fftwq_, name)
 
 /* IMPORTANT: for Windows compilers, you should add a line
         #define FFTW_DLL
@@ -104,6 +105,9 @@ struct fftw_iodim64_do_not_use_me {
      ptrdiff_t os;                     /* output stride */
 };
 
+typedef void (*fftw_write_char_func_do_not_use_me)(char c, void *);
+typedef int (*fftw_read_char_func_do_not_use_me)(void *);
+
 /*
   huge second-order macro that defines prototypes for all API
   functions.  We expand this macro for each supported precision
@@ -124,6 +128,9 @@ typedef struct fftw_iodim64_do_not_use_me X(iodim64);                          \
                                                                           \
 typedef enum fftw_r2r_kind_do_not_use_me X(r2r_kind);                     \
                                                                           \
+typedef fftw_write_char_func_do_not_use_me X(write_char_func);            \
+typedef fftw_read_char_func_do_not_use_me X(read_char_func);              \
+                                                                          \
 FFTW_EXTERN void X(execute)(const X(plan) p);                             \
                                                                           \
 FFTW_EXTERN X(plan) X(plan_dft)(int rank, const int *n,                           \
@@ -306,30 +313,35 @@ FFTW_EXTERN void X(destroy_plan)(X(plan) p);                                 \
 FFTW_EXTERN void X(forget_wisdom)(void);                                  \
 FFTW_EXTERN void X(cleanup)(void);                                        \
                                                                           \
-FFTW_EXTERN void X(set_timelimit)(double);                                \
+FFTW_EXTERN void X(set_timelimit)(double t);                              \
                                                                           \
 FFTW_EXTERN void X(plan_with_nthreads)(int nthreads);                     \
 FFTW_EXTERN int X(init_threads)(void);                                    \
 FFTW_EXTERN void X(cleanup_threads)(void);                                \
                                                                           \
+FFTW_EXTERN int X(export_wisdom_to_filename)(const char *filename);       \
 FFTW_EXTERN void X(export_wisdom_to_file)(FILE *output_file);             \
 FFTW_EXTERN char *X(export_wisdom_to_string)(void);                       \
-FFTW_EXTERN void X(export_wisdom)(void (*write_char)(char c, void *),     \
+FFTW_EXTERN void X(export_wisdom)(X(write_char_func) write_char,          \
                                   void *data);                            \
 FFTW_EXTERN int X(import_system_wisdom)(void);                            \
+FFTW_EXTERN int X(import_wisdom_from_filename)(const char *filename);     \
 FFTW_EXTERN int X(import_wisdom_from_file)(FILE *input_file);             \
 FFTW_EXTERN int X(import_wisdom_from_string)(const char *input_string);           \
-FFTW_EXTERN int X(import_wisdom)(int (*read_char)(void *), void *data);           \
+FFTW_EXTERN int X(import_wisdom)(X(read_char_func) read_char, void *data); \
                                                                           \
 FFTW_EXTERN void X(fprint_plan)(const X(plan) p, FILE *output_file);      \
 FFTW_EXTERN void X(print_plan)(const X(plan) p);                          \
                                                                           \
 FFTW_EXTERN void *X(malloc)(size_t n);                                    \
+FFTW_EXTERN R *X(alloc_real)(size_t n);                                           \
+FFTW_EXTERN C *X(alloc_complex)(size_t n);                                \
 FFTW_EXTERN void X(free)(void *p);                                        \
                                                                           \
 FFTW_EXTERN void X(flops)(const X(plan) p,                                \
                           double *add, double *mul, double *fmas);        \
 FFTW_EXTERN double X(estimate_cost)(const X(plan) p);                     \
+FFTW_EXTERN double X(cost)(const X(plan) p);                              \
                                                                           \
 FFTW_EXTERN const char X(version)[];                                      \
 FFTW_EXTERN const char X(cc)[];                                                   \
@@ -342,6 +354,23 @@ FFTW_DEFINE_API(FFTW_MANGLE_DOUBLE, double, fftw_complex)
 FFTW_DEFINE_API(FFTW_MANGLE_FLOAT, float, fftwf_complex)
 FFTW_DEFINE_API(FFTW_MANGLE_LONG_DOUBLE, long double, fftwl_complex)
 
+/* __float128 (quad precision) is a gcc extension on i386, x86_64, and ia64
+   for gcc >= 4.6 (compiled in FFTW with --enable-quad-precision) */
+#if (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 6)) \
+ && !(defined(__ICC) || defined(__INTEL_COMPILER)) \
+ && (defined(__i386__) || defined(__x86_64__) || defined(__ia64__))
+#  if !defined(FFTW_NO_Complex) && defined(_Complex_I) && defined(complex) && defined(I)
+/* note: __float128 is a typedef, which is not supported with the _Complex
+         keyword in gcc, so instead we use this ugly __attribute__ version.
+         However, we can't simply pass the __attribute__ version to
+         FFTW_DEFINE_API because the __attribute__ confuses gcc in pointer
+         types.  Hence redefining FFTW_DEFINE_COMPLEX.  Ugh. */
+#    undef FFTW_DEFINE_COMPLEX
+#    define FFTW_DEFINE_COMPLEX(R, C) typedef _Complex float __attribute__((mode(TC))) C
+#  endif
+FFTW_DEFINE_API(FFTW_MANGLE_QUAD, __float128, fftwq_complex)
+#endif
+
 #define FFTW_FORWARD (-1)
 #define FFTW_BACKWARD (+1)
 
@@ -356,6 +385,7 @@ FFTW_DEFINE_API(FFTW_MANGLE_LONG_DOUBLE, long double, fftwl_complex)
 #define FFTW_PRESERVE_INPUT (1U << 4) /* cancels FFTW_DESTROY_INPUT */
 #define FFTW_PATIENT (1U << 5) /* IMPATIENT is default */
 #define FFTW_ESTIMATE (1U << 6)
+#define FFTW_WISDOM_ONLY (1U << 21)
 
 /* undocumented beyond-guru flags */
 #define FFTW_ESTIMATE_PATIENT (1U << 7)
@@ -372,7 +402,6 @@ FFTW_DEFINE_API(FFTW_MANGLE_LONG_DOUBLE, long double, fftwl_complex)
 #define FFTW_NO_SLOW (1U << 18)
 #define FFTW_NO_FIXED_RADIX_LARGE_N (1U << 19)
 #define FFTW_ALLOW_PRUNING (1U << 20)
-#define FFTW_WISDOM_ONLY (1U << 21)
 
 #ifdef __cplusplus
 }  /* extern "C" */

diff --git a/util/X86LINUX64/include/fftw3l.f03 b/util/X86LINUX64/include/fftw3l.f03
new file mode 100644 (file)
index 0000000..f700520
--- /dev/null
+++ b/util/X86LINUX64/include/fftw3l.f03
@@ -0,0 +1,595 @@
+! Generated automatically.  DO NOT EDIT!
+
+
+  type, bind(C) :: fftwl_iodim
+     integer(C_INT) n, is, os
+  end type fftwl_iodim
+  type, bind(C) :: fftwl_iodim64
+     integer(C_INTPTR_T) n, is, os
+  end type fftwl_iodim64
+
+  interface
+    type(C_PTR) function fftwl_plan_dft(rank,n,in,out,sign,flags) bind(C, name='fftwl_plan_dft')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwl_plan_dft
+    
+    type(C_PTR) function fftwl_plan_dft_1d(n,in,out,sign,flags) bind(C, name='fftwl_plan_dft_1d')
+      import
+      integer(C_INT), value :: n
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwl_plan_dft_1d
+    
+    type(C_PTR) function fftwl_plan_dft_2d(n0,n1,in,out,sign,flags) bind(C, name='fftwl_plan_dft_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwl_plan_dft_2d
+    
+    type(C_PTR) function fftwl_plan_dft_3d(n0,n1,n2,in,out,sign,flags) bind(C, name='fftwl_plan_dft_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwl_plan_dft_3d
+    
+    type(C_PTR) function fftwl_plan_many_dft(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,sign,flags) &
+                         bind(C, name='fftwl_plan_many_dft')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwl_plan_many_dft
+    
+    type(C_PTR) function fftwl_plan_guru_dft(rank,dims,howmany_rank,howmany_dims,in,out,sign,flags) &
+                         bind(C, name='fftwl_plan_guru_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftwl_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwl_iodim), dimension(*), intent(in) :: howmany_dims
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwl_plan_guru_dft
+    
+    type(C_PTR) function fftwl_plan_guru_split_dft(rank,dims,howmany_rank,howmany_dims,ri,ii,ro,io,flags) &
+                         bind(C, name='fftwl_plan_guru_split_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftwl_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwl_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: ri
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: ii
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: ro
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftwl_plan_guru_split_dft
+    
+    type(C_PTR) function fftwl_plan_guru64_dft(rank,dims,howmany_rank,howmany_dims,in,out,sign,flags) &
+                         bind(C, name='fftwl_plan_guru64_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftwl_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwl_iodim64), dimension(*), intent(in) :: howmany_dims
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwl_plan_guru64_dft
+    
+    type(C_PTR) function fftwl_plan_guru64_split_dft(rank,dims,howmany_rank,howmany_dims,ri,ii,ro,io,flags) &
+                         bind(C, name='fftwl_plan_guru64_split_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftwl_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwl_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: ri
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: ii
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: ro
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftwl_plan_guru64_split_dft
+    
+    subroutine fftwl_execute_dft(p,in,out) bind(C, name='fftwl_execute_dft')
+      import
+      type(C_PTR), value :: p
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(inout) :: in
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+    end subroutine fftwl_execute_dft
+    
+    subroutine fftwl_execute_split_dft(p,ri,ii,ro,io) bind(C, name='fftwl_execute_split_dft')
+      import
+      type(C_PTR), value :: p
+      real(C_LONG_DOUBLE), dimension(*), intent(inout) :: ri
+      real(C_LONG_DOUBLE), dimension(*), intent(inout) :: ii
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: ro
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: io
+    end subroutine fftwl_execute_split_dft
+    
+    type(C_PTR) function fftwl_plan_many_dft_r2c(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,flags) &
+                         bind(C, name='fftwl_plan_many_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_INT), value :: flags
+    end function fftwl_plan_many_dft_r2c
+    
+    type(C_PTR) function fftwl_plan_dft_r2c(rank,n,in,out,flags) bind(C, name='fftwl_plan_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwl_plan_dft_r2c
+    
+    type(C_PTR) function fftwl_plan_dft_r2c_1d(n,in,out,flags) bind(C, name='fftwl_plan_dft_r2c_1d')
+      import
+      integer(C_INT), value :: n
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwl_plan_dft_r2c_1d
+    
+    type(C_PTR) function fftwl_plan_dft_r2c_2d(n0,n1,in,out,flags) bind(C, name='fftwl_plan_dft_r2c_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwl_plan_dft_r2c_2d
+    
+    type(C_PTR) function fftwl_plan_dft_r2c_3d(n0,n1,n2,in,out,flags) bind(C, name='fftwl_plan_dft_r2c_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwl_plan_dft_r2c_3d
+    
+    type(C_PTR) function fftwl_plan_many_dft_c2r(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,flags) &
+                         bind(C, name='fftwl_plan_many_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_INT), value :: flags
+    end function fftwl_plan_many_dft_c2r
+    
+    type(C_PTR) function fftwl_plan_dft_c2r(rank,n,in,out,flags) bind(C, name='fftwl_plan_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwl_plan_dft_c2r
+    
+    type(C_PTR) function fftwl_plan_dft_c2r_1d(n,in,out,flags) bind(C, name='fftwl_plan_dft_c2r_1d')
+      import
+      integer(C_INT), value :: n
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwl_plan_dft_c2r_1d
+    
+    type(C_PTR) function fftwl_plan_dft_c2r_2d(n0,n1,in,out,flags) bind(C, name='fftwl_plan_dft_c2r_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwl_plan_dft_c2r_2d
+    
+    type(C_PTR) function fftwl_plan_dft_c2r_3d(n0,n1,n2,in,out,flags) bind(C, name='fftwl_plan_dft_c2r_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwl_plan_dft_c2r_3d
+    
+    type(C_PTR) function fftwl_plan_guru_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftwl_plan_guru_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftwl_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwl_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwl_plan_guru_dft_r2c
+    
+    type(C_PTR) function fftwl_plan_guru_dft_c2r(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftwl_plan_guru_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwl_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwl_iodim), dimension(*), intent(in) :: howmany_dims
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwl_plan_guru_dft_c2r
+    
+    type(C_PTR) function fftwl_plan_guru_split_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,ro,io,flags) &
+                         bind(C, name='fftwl_plan_guru_split_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftwl_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwl_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: ro
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftwl_plan_guru_split_dft_r2c
+    
+    type(C_PTR) function fftwl_plan_guru_split_dft_c2r(rank,dims,howmany_rank,howmany_dims,ri,ii,out,flags) &
+                         bind(C, name='fftwl_plan_guru_split_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwl_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwl_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: ri
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: ii
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwl_plan_guru_split_dft_c2r
+    
+    type(C_PTR) function fftwl_plan_guru64_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftwl_plan_guru64_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftwl_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwl_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwl_plan_guru64_dft_r2c
+    
+    type(C_PTR) function fftwl_plan_guru64_dft_c2r(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftwl_plan_guru64_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwl_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwl_iodim64), dimension(*), intent(in) :: howmany_dims
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwl_plan_guru64_dft_c2r
+    
+    type(C_PTR) function fftwl_plan_guru64_split_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,ro,io,flags) &
+                         bind(C, name='fftwl_plan_guru64_split_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftwl_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwl_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: ro
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftwl_plan_guru64_split_dft_r2c
+    
+    type(C_PTR) function fftwl_plan_guru64_split_dft_c2r(rank,dims,howmany_rank,howmany_dims,ri,ii,out,flags) &
+                         bind(C, name='fftwl_plan_guru64_split_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwl_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwl_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: ri
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: ii
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwl_plan_guru64_split_dft_c2r
+    
+    subroutine fftwl_execute_dft_r2c(p,in,out) bind(C, name='fftwl_execute_dft_r2c')
+      import
+      type(C_PTR), value :: p
+      real(C_LONG_DOUBLE), dimension(*), intent(inout) :: in
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(out) :: out
+    end subroutine fftwl_execute_dft_r2c
+    
+    subroutine fftwl_execute_dft_c2r(p,in,out) bind(C, name='fftwl_execute_dft_c2r')
+      import
+      type(C_PTR), value :: p
+      complex(C_LONG_DOUBLE_COMPLEX), dimension(*), intent(inout) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+    end subroutine fftwl_execute_dft_c2r
+    
+    subroutine fftwl_execute_split_dft_r2c(p,in,ro,io) bind(C, name='fftwl_execute_split_dft_r2c')
+      import
+      type(C_PTR), value :: p
+      real(C_LONG_DOUBLE), dimension(*), intent(inout) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: ro
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: io
+    end subroutine fftwl_execute_split_dft_r2c
+    
+    subroutine fftwl_execute_split_dft_c2r(p,ri,ii,out) bind(C, name='fftwl_execute_split_dft_c2r')
+      import
+      type(C_PTR), value :: p
+      real(C_LONG_DOUBLE), dimension(*), intent(inout) :: ri
+      real(C_LONG_DOUBLE), dimension(*), intent(inout) :: ii
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+    end subroutine fftwl_execute_split_dft_c2r
+    
+    type(C_PTR) function fftwl_plan_many_r2r(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,kind,flags) &
+                         bind(C, name='fftwl_plan_many_r2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftwl_plan_many_r2r
+    
+    type(C_PTR) function fftwl_plan_r2r(rank,n,in,out,kind,flags) bind(C, name='fftwl_plan_r2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftwl_plan_r2r
+    
+    type(C_PTR) function fftwl_plan_r2r_1d(n,in,out,kind,flags) bind(C, name='fftwl_plan_r2r_1d')
+      import
+      integer(C_INT), value :: n
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), value :: kind
+      integer(C_INT), value :: flags
+    end function fftwl_plan_r2r_1d
+    
+    type(C_PTR) function fftwl_plan_r2r_2d(n0,n1,in,out,kind0,kind1,flags) bind(C, name='fftwl_plan_r2r_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), value :: kind0
+      integer(C_FFTW_R2R_KIND), value :: kind1
+      integer(C_INT), value :: flags
+    end function fftwl_plan_r2r_2d
+    
+    type(C_PTR) function fftwl_plan_r2r_3d(n0,n1,n2,in,out,kind0,kind1,kind2,flags) bind(C, name='fftwl_plan_r2r_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), value :: kind0
+      integer(C_FFTW_R2R_KIND), value :: kind1
+      integer(C_FFTW_R2R_KIND), value :: kind2
+      integer(C_INT), value :: flags
+    end function fftwl_plan_r2r_3d
+    
+    type(C_PTR) function fftwl_plan_guru_r2r(rank,dims,howmany_rank,howmany_dims,in,out,kind,flags) &
+                         bind(C, name='fftwl_plan_guru_r2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwl_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwl_iodim), dimension(*), intent(in) :: howmany_dims
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftwl_plan_guru_r2r
+    
+    type(C_PTR) function fftwl_plan_guru64_r2r(rank,dims,howmany_rank,howmany_dims,in,out,kind,flags) &
+                         bind(C, name='fftwl_plan_guru64_r2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwl_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwl_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftwl_plan_guru64_r2r
+    
+    subroutine fftwl_execute_r2r(p,in,out) bind(C, name='fftwl_execute_r2r')
+      import
+      type(C_PTR), value :: p
+      real(C_LONG_DOUBLE), dimension(*), intent(inout) :: in
+      real(C_LONG_DOUBLE), dimension(*), intent(out) :: out
+    end subroutine fftwl_execute_r2r
+    
+    subroutine fftwl_destroy_plan(p) bind(C, name='fftwl_destroy_plan')
+      import
+      type(C_PTR), value :: p
+    end subroutine fftwl_destroy_plan
+    
+    subroutine fftwl_forget_wisdom() bind(C, name='fftwl_forget_wisdom')
+      import
+    end subroutine fftwl_forget_wisdom
+    
+    subroutine fftwl_cleanup() bind(C, name='fftwl_cleanup')
+      import
+    end subroutine fftwl_cleanup
+    
+    subroutine fftwl_set_timelimit(t) bind(C, name='fftwl_set_timelimit')
+      import
+      real(C_DOUBLE), value :: t
+    end subroutine fftwl_set_timelimit
+    
+    subroutine fftwl_plan_with_nthreads(nthreads) bind(C, name='fftwl_plan_with_nthreads')
+      import
+      integer(C_INT), value :: nthreads
+    end subroutine fftwl_plan_with_nthreads
+    
+    integer(C_INT) function fftwl_init_threads() bind(C, name='fftwl_init_threads')
+      import
+    end function fftwl_init_threads
+    
+    subroutine fftwl_cleanup_threads() bind(C, name='fftwl_cleanup_threads')
+      import
+    end subroutine fftwl_cleanup_threads
+    
+    integer(C_INT) function fftwl_export_wisdom_to_filename(filename) bind(C, name='fftwl_export_wisdom_to_filename')
+      import
+      character(C_CHAR), dimension(*), intent(in) :: filename
+    end function fftwl_export_wisdom_to_filename
+    
+    subroutine fftwl_export_wisdom_to_file(output_file) bind(C, name='fftwl_export_wisdom_to_file')
+      import
+      type(C_PTR), value :: output_file
+    end subroutine fftwl_export_wisdom_to_file
+    
+    type(C_PTR) function fftwl_export_wisdom_to_string() bind(C, name='fftwl_export_wisdom_to_string')
+      import
+    end function fftwl_export_wisdom_to_string
+    
+    subroutine fftwl_export_wisdom(write_char,data) bind(C, name='fftwl_export_wisdom')
+      import
+      type(C_FUNPTR), value :: write_char
+      type(C_PTR), value :: data
+    end subroutine fftwl_export_wisdom
+    
+    integer(C_INT) function fftwl_import_system_wisdom() bind(C, name='fftwl_import_system_wisdom')
+      import
+    end function fftwl_import_system_wisdom
+    
+    integer(C_INT) function fftwl_import_wisdom_from_filename(filename) bind(C, name='fftwl_import_wisdom_from_filename')
+      import
+      character(C_CHAR), dimension(*), intent(in) :: filename
+    end function fftwl_import_wisdom_from_filename
+    
+    integer(C_INT) function fftwl_import_wisdom_from_file(input_file) bind(C, name='fftwl_import_wisdom_from_file')
+      import
+      type(C_PTR), value :: input_file
+    end function fftwl_import_wisdom_from_file
+    
+    integer(C_INT) function fftwl_import_wisdom_from_string(input_string) bind(C, name='fftwl_import_wisdom_from_string')
+      import
+      character(C_CHAR), dimension(*), intent(in) :: input_string
+    end function fftwl_import_wisdom_from_string
+    
+    integer(C_INT) function fftwl_import_wisdom(read_char,data) bind(C, name='fftwl_import_wisdom')
+      import
+      type(C_FUNPTR), value :: read_char
+      type(C_PTR), value :: data
+    end function fftwl_import_wisdom
+    
+    subroutine fftwl_fprint_plan(p,output_file) bind(C, name='fftwl_fprint_plan')
+      import
+      type(C_PTR), value :: p
+      type(C_PTR), value :: output_file
+    end subroutine fftwl_fprint_plan
+    
+    subroutine fftwl_print_plan(p) bind(C, name='fftwl_print_plan')
+      import
+      type(C_PTR), value :: p
+    end subroutine fftwl_print_plan
+    
+    type(C_PTR) function fftwl_malloc(n) bind(C, name='fftwl_malloc')
+      import
+      integer(C_SIZE_T), value :: n
+    end function fftwl_malloc
+    
+    type(C_PTR) function fftwl_alloc_real(n) bind(C, name='fftwl_alloc_real')
+      import
+      integer(C_SIZE_T), value :: n
+    end function fftwl_alloc_real
+    
+    type(C_PTR) function fftwl_alloc_complex(n) bind(C, name='fftwl_alloc_complex')
+      import
+      integer(C_SIZE_T), value :: n
+    end function fftwl_alloc_complex
+    
+    subroutine fftwl_free(p) bind(C, name='fftwl_free')
+      import
+      type(C_PTR), value :: p
+    end subroutine fftwl_free
+    
+    subroutine fftwl_flops(p,add,mul,fmas) bind(C, name='fftwl_flops')
+      import
+      type(C_PTR), value :: p
+      real(C_DOUBLE), intent(out) :: add
+      real(C_DOUBLE), intent(out) :: mul
+      real(C_DOUBLE), intent(out) :: fmas
+    end subroutine fftwl_flops
+    
+    real(C_DOUBLE) function fftwl_estimate_cost(p) bind(C, name='fftwl_estimate_cost')
+      import
+      type(C_PTR), value :: p
+    end function fftwl_estimate_cost
+    
+    real(C_DOUBLE) function fftwl_cost(p) bind(C, name='fftwl_cost')
+      import
+      type(C_PTR), value :: p
+    end function fftwl_cost
+    
+  end interface

diff --git a/util/X86LINUX64/include/fftw3q.f03 b/util/X86LINUX64/include/fftw3q.f03
new file mode 100644 (file)
index 0000000..662e02c
--- /dev/null
+++ b/util/X86LINUX64/include/fftw3q.f03
@@ -0,0 +1,591 @@
+! Generated automatically.  DO NOT EDIT!
+
+
+  type, bind(C) :: fftwq_iodim
+     integer(C_INT) n, is, os
+  end type fftwq_iodim
+  type, bind(C) :: fftwq_iodim64
+     integer(C_INTPTR_T) n, is, os
+  end type fftwq_iodim64
+
+  interface
+    type(C_PTR) function fftwq_plan_dft(rank,n,in,out,sign,flags) bind(C, name='fftwq_plan_dft')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      complex(16), dimension(*), intent(out) :: in
+      complex(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwq_plan_dft
+    
+    type(C_PTR) function fftwq_plan_dft_1d(n,in,out,sign,flags) bind(C, name='fftwq_plan_dft_1d')
+      import
+      integer(C_INT), value :: n
+      complex(16), dimension(*), intent(out) :: in
+      complex(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwq_plan_dft_1d
+    
+    type(C_PTR) function fftwq_plan_dft_2d(n0,n1,in,out,sign,flags) bind(C, name='fftwq_plan_dft_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      complex(16), dimension(*), intent(out) :: in
+      complex(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwq_plan_dft_2d
+    
+    type(C_PTR) function fftwq_plan_dft_3d(n0,n1,n2,in,out,sign,flags) bind(C, name='fftwq_plan_dft_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      complex(16), dimension(*), intent(out) :: in
+      complex(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwq_plan_dft_3d
+    
+    type(C_PTR) function fftwq_plan_many_dft(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,sign,flags) &
+                         bind(C, name='fftwq_plan_many_dft')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      complex(16), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      complex(16), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwq_plan_many_dft
+    
+    type(C_PTR) function fftwq_plan_guru_dft(rank,dims,howmany_rank,howmany_dims,in,out,sign,flags) &
+                         bind(C, name='fftwq_plan_guru_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftwq_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwq_iodim), dimension(*), intent(in) :: howmany_dims
+      complex(16), dimension(*), intent(out) :: in
+      complex(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwq_plan_guru_dft
+    
+    type(C_PTR) function fftwq_plan_guru_split_dft(rank,dims,howmany_rank,howmany_dims,ri,ii,ro,io,flags) &
+                         bind(C, name='fftwq_plan_guru_split_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftwq_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwq_iodim), dimension(*), intent(in) :: howmany_dims
+      real(16), dimension(*), intent(out) :: ri
+      real(16), dimension(*), intent(out) :: ii
+      real(16), dimension(*), intent(out) :: ro
+      real(16), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftwq_plan_guru_split_dft
+    
+    type(C_PTR) function fftwq_plan_guru64_dft(rank,dims,howmany_rank,howmany_dims,in,out,sign,flags) &
+                         bind(C, name='fftwq_plan_guru64_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftwq_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwq_iodim64), dimension(*), intent(in) :: howmany_dims
+      complex(16), dimension(*), intent(out) :: in
+      complex(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: sign
+      integer(C_INT), value :: flags
+    end function fftwq_plan_guru64_dft
+    
+    type(C_PTR) function fftwq_plan_guru64_split_dft(rank,dims,howmany_rank,howmany_dims,ri,ii,ro,io,flags) &
+                         bind(C, name='fftwq_plan_guru64_split_dft')
+      import
+      integer(C_INT), value :: rank
+      type(fftwq_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwq_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(16), dimension(*), intent(out) :: ri
+      real(16), dimension(*), intent(out) :: ii
+      real(16), dimension(*), intent(out) :: ro
+      real(16), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftwq_plan_guru64_split_dft
+    
+    subroutine fftwq_execute_dft(p,in,out) bind(C, name='fftwq_execute_dft')
+      import
+      type(C_PTR), value :: p
+      complex(16), dimension(*), intent(inout) :: in
+      complex(16), dimension(*), intent(out) :: out
+    end subroutine fftwq_execute_dft
+    
+    subroutine fftwq_execute_split_dft(p,ri,ii,ro,io) bind(C, name='fftwq_execute_split_dft')
+      import
+      type(C_PTR), value :: p
+      real(16), dimension(*), intent(inout) :: ri
+      real(16), dimension(*), intent(inout) :: ii
+      real(16), dimension(*), intent(out) :: ro
+      real(16), dimension(*), intent(out) :: io
+    end subroutine fftwq_execute_split_dft
+    
+    type(C_PTR) function fftwq_plan_many_dft_r2c(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,flags) &
+                         bind(C, name='fftwq_plan_many_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      real(16), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      complex(16), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_INT), value :: flags
+    end function fftwq_plan_many_dft_r2c
+    
+    type(C_PTR) function fftwq_plan_dft_r2c(rank,n,in,out,flags) bind(C, name='fftwq_plan_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      real(16), dimension(*), intent(out) :: in
+      complex(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwq_plan_dft_r2c
+    
+    type(C_PTR) function fftwq_plan_dft_r2c_1d(n,in,out,flags) bind(C, name='fftwq_plan_dft_r2c_1d')
+      import
+      integer(C_INT), value :: n
+      real(16), dimension(*), intent(out) :: in
+      complex(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwq_plan_dft_r2c_1d
+    
+    type(C_PTR) function fftwq_plan_dft_r2c_2d(n0,n1,in,out,flags) bind(C, name='fftwq_plan_dft_r2c_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      real(16), dimension(*), intent(out) :: in
+      complex(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwq_plan_dft_r2c_2d
+    
+    type(C_PTR) function fftwq_plan_dft_r2c_3d(n0,n1,n2,in,out,flags) bind(C, name='fftwq_plan_dft_r2c_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      real(16), dimension(*), intent(out) :: in
+      complex(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwq_plan_dft_r2c_3d
+    
+    type(C_PTR) function fftwq_plan_many_dft_c2r(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,flags) &
+                         bind(C, name='fftwq_plan_many_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      complex(16), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      real(16), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_INT), value :: flags
+    end function fftwq_plan_many_dft_c2r
+    
+    type(C_PTR) function fftwq_plan_dft_c2r(rank,n,in,out,flags) bind(C, name='fftwq_plan_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      complex(16), dimension(*), intent(out) :: in
+      real(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwq_plan_dft_c2r
+    
+    type(C_PTR) function fftwq_plan_dft_c2r_1d(n,in,out,flags) bind(C, name='fftwq_plan_dft_c2r_1d')
+      import
+      integer(C_INT), value :: n
+      complex(16), dimension(*), intent(out) :: in
+      real(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwq_plan_dft_c2r_1d
+    
+    type(C_PTR) function fftwq_plan_dft_c2r_2d(n0,n1,in,out,flags) bind(C, name='fftwq_plan_dft_c2r_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      complex(16), dimension(*), intent(out) :: in
+      real(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwq_plan_dft_c2r_2d
+    
+    type(C_PTR) function fftwq_plan_dft_c2r_3d(n0,n1,n2,in,out,flags) bind(C, name='fftwq_plan_dft_c2r_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      complex(16), dimension(*), intent(out) :: in
+      real(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwq_plan_dft_c2r_3d
+    
+    type(C_PTR) function fftwq_plan_guru_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftwq_plan_guru_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftwq_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwq_iodim), dimension(*), intent(in) :: howmany_dims
+      real(16), dimension(*), intent(out) :: in
+      complex(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwq_plan_guru_dft_r2c
+    
+    type(C_PTR) function fftwq_plan_guru_dft_c2r(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftwq_plan_guru_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwq_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwq_iodim), dimension(*), intent(in) :: howmany_dims
+      complex(16), dimension(*), intent(out) :: in
+      real(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwq_plan_guru_dft_c2r
+    
+    type(C_PTR) function fftwq_plan_guru_split_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,ro,io,flags) &
+                         bind(C, name='fftwq_plan_guru_split_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftwq_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwq_iodim), dimension(*), intent(in) :: howmany_dims
+      real(16), dimension(*), intent(out) :: in
+      real(16), dimension(*), intent(out) :: ro
+      real(16), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftwq_plan_guru_split_dft_r2c
+    
+    type(C_PTR) function fftwq_plan_guru_split_dft_c2r(rank,dims,howmany_rank,howmany_dims,ri,ii,out,flags) &
+                         bind(C, name='fftwq_plan_guru_split_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwq_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwq_iodim), dimension(*), intent(in) :: howmany_dims
+      real(16), dimension(*), intent(out) :: ri
+      real(16), dimension(*), intent(out) :: ii
+      real(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwq_plan_guru_split_dft_c2r
+    
+    type(C_PTR) function fftwq_plan_guru64_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftwq_plan_guru64_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftwq_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwq_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(16), dimension(*), intent(out) :: in
+      complex(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwq_plan_guru64_dft_r2c
+    
+    type(C_PTR) function fftwq_plan_guru64_dft_c2r(rank,dims,howmany_rank,howmany_dims,in,out,flags) &
+                         bind(C, name='fftwq_plan_guru64_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwq_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwq_iodim64), dimension(*), intent(in) :: howmany_dims
+      complex(16), dimension(*), intent(out) :: in
+      real(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwq_plan_guru64_dft_c2r
+    
+    type(C_PTR) function fftwq_plan_guru64_split_dft_r2c(rank,dims,howmany_rank,howmany_dims,in,ro,io,flags) &
+                         bind(C, name='fftwq_plan_guru64_split_dft_r2c')
+      import
+      integer(C_INT), value :: rank
+      type(fftwq_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwq_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(16), dimension(*), intent(out) :: in
+      real(16), dimension(*), intent(out) :: ro
+      real(16), dimension(*), intent(out) :: io
+      integer(C_INT), value :: flags
+    end function fftwq_plan_guru64_split_dft_r2c
+    
+    type(C_PTR) function fftwq_plan_guru64_split_dft_c2r(rank,dims,howmany_rank,howmany_dims,ri,ii,out,flags) &
+                         bind(C, name='fftwq_plan_guru64_split_dft_c2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwq_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwq_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(16), dimension(*), intent(out) :: ri
+      real(16), dimension(*), intent(out) :: ii
+      real(16), dimension(*), intent(out) :: out
+      integer(C_INT), value :: flags
+    end function fftwq_plan_guru64_split_dft_c2r
+    
+    subroutine fftwq_execute_dft_r2c(p,in,out) bind(C, name='fftwq_execute_dft_r2c')
+      import
+      type(C_PTR), value :: p
+      real(16), dimension(*), intent(inout) :: in
+      complex(16), dimension(*), intent(out) :: out
+    end subroutine fftwq_execute_dft_r2c
+    
+    subroutine fftwq_execute_dft_c2r(p,in,out) bind(C, name='fftwq_execute_dft_c2r')
+      import
+      type(C_PTR), value :: p
+      complex(16), dimension(*), intent(inout) :: in
+      real(16), dimension(*), intent(out) :: out
+    end subroutine fftwq_execute_dft_c2r
+    
+    subroutine fftwq_execute_split_dft_r2c(p,in,ro,io) bind(C, name='fftwq_execute_split_dft_r2c')
+      import
+      type(C_PTR), value :: p
+      real(16), dimension(*), intent(inout) :: in
+      real(16), dimension(*), intent(out) :: ro
+      real(16), dimension(*), intent(out) :: io
+    end subroutine fftwq_execute_split_dft_r2c
+    
+    subroutine fftwq_execute_split_dft_c2r(p,ri,ii,out) bind(C, name='fftwq_execute_split_dft_c2r')
+      import
+      type(C_PTR), value :: p
+      real(16), dimension(*), intent(inout) :: ri
+      real(16), dimension(*), intent(inout) :: ii
+      real(16), dimension(*), intent(out) :: out
+    end subroutine fftwq_execute_split_dft_c2r
+    
+    type(C_PTR) function fftwq_plan_many_r2r(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,kind,flags) &
+                         bind(C, name='fftwq_plan_many_r2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      integer(C_INT), value :: howmany
+      real(16), dimension(*), intent(out) :: in
+      integer(C_INT), dimension(*), intent(in) :: inembed
+      integer(C_INT), value :: istride
+      integer(C_INT), value :: idist
+      real(16), dimension(*), intent(out) :: out
+      integer(C_INT), dimension(*), intent(in) :: onembed
+      integer(C_INT), value :: ostride
+      integer(C_INT), value :: odist
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftwq_plan_many_r2r
+    
+    type(C_PTR) function fftwq_plan_r2r(rank,n,in,out,kind,flags) bind(C, name='fftwq_plan_r2r')
+      import
+      integer(C_INT), value :: rank
+      integer(C_INT), dimension(*), intent(in) :: n
+      real(16), dimension(*), intent(out) :: in
+      real(16), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftwq_plan_r2r
+    
+    type(C_PTR) function fftwq_plan_r2r_1d(n,in,out,kind,flags) bind(C, name='fftwq_plan_r2r_1d')
+      import
+      integer(C_INT), value :: n
+      real(16), dimension(*), intent(out) :: in
+      real(16), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), value :: kind
+      integer(C_INT), value :: flags
+    end function fftwq_plan_r2r_1d
+    
+    type(C_PTR) function fftwq_plan_r2r_2d(n0,n1,in,out,kind0,kind1,flags) bind(C, name='fftwq_plan_r2r_2d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      real(16), dimension(*), intent(out) :: in
+      real(16), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), value :: kind0
+      integer(C_FFTW_R2R_KIND), value :: kind1
+      integer(C_INT), value :: flags
+    end function fftwq_plan_r2r_2d
+    
+    type(C_PTR) function fftwq_plan_r2r_3d(n0,n1,n2,in,out,kind0,kind1,kind2,flags) bind(C, name='fftwq_plan_r2r_3d')
+      import
+      integer(C_INT), value :: n0
+      integer(C_INT), value :: n1
+      integer(C_INT), value :: n2
+      real(16), dimension(*), intent(out) :: in
+      real(16), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), value :: kind0
+      integer(C_FFTW_R2R_KIND), value :: kind1
+      integer(C_FFTW_R2R_KIND), value :: kind2
+      integer(C_INT), value :: flags
+    end function fftwq_plan_r2r_3d
+    
+    type(C_PTR) function fftwq_plan_guru_r2r(rank,dims,howmany_rank,howmany_dims,in,out,kind,flags) &
+                         bind(C, name='fftwq_plan_guru_r2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwq_iodim), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwq_iodim), dimension(*), intent(in) :: howmany_dims
+      real(16), dimension(*), intent(out) :: in
+      real(16), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftwq_plan_guru_r2r
+    
+    type(C_PTR) function fftwq_plan_guru64_r2r(rank,dims,howmany_rank,howmany_dims,in,out,kind,flags) &
+                         bind(C, name='fftwq_plan_guru64_r2r')
+      import
+      integer(C_INT), value :: rank
+      type(fftwq_iodim64), dimension(*), intent(in) :: dims
+      integer(C_INT), value :: howmany_rank
+      type(fftwq_iodim64), dimension(*), intent(in) :: howmany_dims
+      real(16), dimension(*), intent(out) :: in
+      real(16), dimension(*), intent(out) :: out
+      integer(C_FFTW_R2R_KIND), dimension(*), intent(in) :: kind
+      integer(C_INT), value :: flags
+    end function fftwq_plan_guru64_r2r
+    
+    subroutine fftwq_execute_r2r(p,in,out) bind(C, name='fftwq_execute_r2r')
+      import
+      type(C_PTR), value :: p
+      real(16), dimension(*), intent(inout) :: in
+      real(16), dimension(*), intent(out) :: out
+    end subroutine fftwq_execute_r2r
+    
+    subroutine fftwq_destroy_plan(p) bind(C, name='fftwq_destroy_plan')
+      import
+      type(C_PTR), value :: p
+    end subroutine fftwq_destroy_plan
+    
+    subroutine fftwq_forget_wisdom() bind(C, name='fftwq_forget_wisdom')
+      import
+    end subroutine fftwq_forget_wisdom
+    
+    subroutine fftwq_cleanup() bind(C, name='fftwq_cleanup')
+      import
+    end subroutine fftwq_cleanup
+    
+    subroutine fftwq_set_timelimit(t) bind(C, name='fftwq_set_timelimit')
+      import
+      real(C_DOUBLE), value :: t
+    end subroutine fftwq_set_timelimit
+    
+    subroutine fftwq_plan_with_nthreads(nthreads) bind(C, name='fftwq_plan_with_nthreads')
+      import
+      integer(C_INT), value :: nthreads
+    end subroutine fftwq_plan_with_nthreads
+    
+    integer(C_INT) function fftwq_init_threads() bind(C, name='fftwq_init_threads')
+      import
+    end function fftwq_init_threads
+    
+    subroutine fftwq_cleanup_threads() bind(C, name='fftwq_cleanup_threads')
+      import
+    end subroutine fftwq_cleanup_threads
+    
+    integer(C_INT) function fftwq_export_wisdom_to_filename(filename) bind(C, name='fftwq_export_wisdom_to_filename')
+      import
+      character(C_CHAR), dimension(*), intent(in) :: filename
+    end function fftwq_export_wisdom_to_filename
+    
+    subroutine fftwq_export_wisdom_to_file(output_file) bind(C, name='fftwq_export_wisdom_to_file')
+      import
+      type(C_PTR), value :: output_file
+    end subroutine fftwq_export_wisdom_to_file
+    
+    type(C_PTR) function fftwq_export_wisdom_to_string() bind(C, name='fftwq_export_wisdom_to_string')
+      import
+    end function fftwq_export_wisdom_to_string
+    
+    subroutine fftwq_export_wisdom(write_char,data) bind(C, name='fftwq_export_wisdom')
+      import
+      type(C_FUNPTR), value :: write_char
+      type(C_PTR), value :: data
+    end subroutine fftwq_export_wisdom
+    
+    integer(C_INT) function fftwq_import_system_wisdom() bind(C, name='fftwq_import_system_wisdom')
+      import
+    end function fftwq_import_system_wisdom
+    
+    integer(C_INT) function fftwq_import_wisdom_from_filename(filename) bind(C, name='fftwq_import_wisdom_from_filename')
+      import
+      character(C_CHAR), dimension(*), intent(in) :: filename
+    end function fftwq_import_wisdom_from_filename
+    
+    integer(C_INT) function fftwq_import_wisdom_from_file(input_file) bind(C, name='fftwq_import_wisdom_from_file')
+      import
+      type(C_PTR), value :: input_file
+    end function fftwq_import_wisdom_from_file
+    
+    integer(C_INT) function fftwq_import_wisdom_from_string(input_string) bind(C, name='fftwq_import_wisdom_from_string')
+      import
+      character(C_CHAR), dimension(*), intent(in) :: input_string
+    end function fftwq_import_wisdom_from_string
+    
+    integer(C_INT) function fftwq_import_wisdom(read_char,data) bind(C, name='fftwq_import_wisdom')
+      import
+      type(C_FUNPTR), value :: read_char
+      type(C_PTR), value :: data
+    end function fftwq_import_wisdom
+    
+    subroutine fftwq_fprint_plan(p,output_file) bind(C, name='fftwq_fprint_plan')
+      import
+      type(C_PTR), value :: p
+      type(C_PTR), value :: output_file
+    end subroutine fftwq_fprint_plan
+    
+    subroutine fftwq_print_plan(p) bind(C, name='fftwq_print_plan')
+      import
+      type(C_PTR), value :: p
+    end subroutine fftwq_print_plan
+    
+    type(C_PTR) function fftwq_malloc(n) bind(C, name='fftwq_malloc')
+      import
+      integer(C_SIZE_T), value :: n
+    end function fftwq_malloc
+    
+! Unable to generate Fortran interface for fftwq_alloc_real
+    type(C_PTR) function fftwq_alloc_complex(n) bind(C, name='fftwq_alloc_complex')
+      import
+      integer(C_SIZE_T), value :: n
+    end function fftwq_alloc_complex
+    
+    subroutine fftwq_free(p) bind(C, name='fftwq_free')
+      import
+      type(C_PTR), value :: p
+    end subroutine fftwq_free
+    
+    subroutine fftwq_flops(p,add,mul,fmas) bind(C, name='fftwq_flops')
+      import
+      type(C_PTR), value :: p
+      real(C_DOUBLE), intent(out) :: add
+      real(C_DOUBLE), intent(out) :: mul
+      real(C_DOUBLE), intent(out) :: fmas
+    end subroutine fftwq_flops
+    
+    real(C_DOUBLE) function fftwq_estimate_cost(p) bind(C, name='fftwq_estimate_cost')
+      import
+      type(C_PTR), value :: p
+    end function fftwq_estimate_cost
+    
+    real(C_DOUBLE) function fftwq_cost(p) bind(C, name='fftwq_cost')
+      import
+      type(C_PTR), value :: p
+    end function fftwq_cost
+    
+  end interface

diff --git a/util/X86LINUX64/include/gsl/gsl_blas.h b/util/X86LINUX64/include/gsl/gsl_blas.h
new file mode 100644 (file)
index 0000000..7c42714
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_blas.h
@@ -0,0 +1,602 @@
+/* blas/gsl_blas.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/*
+ * Author:  G. Jungman
+ */
+#ifndef __GSL_BLAS_H__
+#define __GSL_BLAS_H__
+
+#include <gsl/gsl_vector.h>
+#include <gsl/gsl_matrix.h>
+
+#include <gsl/gsl_blas_types.h>
+
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* ========================================================================
+ * Level 1
+ * ========================================================================
+ */
+
+int gsl_blas_sdsdot (float alpha,
+                     const gsl_vector_float * X,
+                     const gsl_vector_float * Y,
+                     float * result
+                     );
+
+int gsl_blas_dsdot (const gsl_vector_float * X,
+                    const gsl_vector_float * Y,
+                    double * result
+                    );
+
+int gsl_blas_sdot (const gsl_vector_float * X,
+                   const gsl_vector_float * Y,
+                   float * result
+                   );
+
+int gsl_blas_ddot (const gsl_vector * X,
+                   const gsl_vector * Y,
+                   double * result
+                   );
+
+
+int  gsl_blas_cdotu (const gsl_vector_complex_float * X,
+                     const gsl_vector_complex_float * Y,
+                     gsl_complex_float * dotu);
+
+int  gsl_blas_cdotc (const gsl_vector_complex_float * X,
+                     const gsl_vector_complex_float * Y,
+                     gsl_complex_float * dotc);
+
+int  gsl_blas_zdotu (const gsl_vector_complex * X,
+                     const gsl_vector_complex * Y,
+                     gsl_complex * dotu);
+
+int  gsl_blas_zdotc (const gsl_vector_complex * X,
+                     const gsl_vector_complex * Y,
+                     gsl_complex * dotc);
+
+
+float  gsl_blas_snrm2  (const gsl_vector_float * X);
+float  gsl_blas_sasum  (const gsl_vector_float * X);
+double gsl_blas_dnrm2  (const gsl_vector * X);
+double gsl_blas_dasum  (const gsl_vector * X);
+float  gsl_blas_scnrm2 (const gsl_vector_complex_float * X);
+float  gsl_blas_scasum (const gsl_vector_complex_float * X);
+double gsl_blas_dznrm2 (const gsl_vector_complex * X);
+double gsl_blas_dzasum (const gsl_vector_complex * X);
+
+
+CBLAS_INDEX_t gsl_blas_isamax (const gsl_vector_float * X);
+CBLAS_INDEX_t gsl_blas_idamax (const gsl_vector * X);
+CBLAS_INDEX_t gsl_blas_icamax (const gsl_vector_complex_float * X);
+CBLAS_INDEX_t gsl_blas_izamax (const gsl_vector_complex * X);
+
+
+int  gsl_blas_sswap (gsl_vector_float * X,
+                     gsl_vector_float * Y);
+
+int  gsl_blas_scopy (const gsl_vector_float * X,
+                     gsl_vector_float * Y);
+
+int  gsl_blas_saxpy (float alpha,
+                     const gsl_vector_float * X,
+                     gsl_vector_float * Y);
+
+int  gsl_blas_dswap (gsl_vector * X,
+                     gsl_vector * Y);
+
+int  gsl_blas_dcopy (const gsl_vector * X,
+                     gsl_vector * Y);
+
+int  gsl_blas_daxpy (double alpha,
+                     const gsl_vector * X,
+                     gsl_vector * Y);
+
+int  gsl_blas_cswap (gsl_vector_complex_float * X,
+                     gsl_vector_complex_float * Y);
+
+int  gsl_blas_ccopy (const gsl_vector_complex_float * X,
+                     gsl_vector_complex_float * Y);
+
+int  gsl_blas_caxpy (const gsl_complex_float alpha,
+                     const gsl_vector_complex_float * X,
+                     gsl_vector_complex_float * Y);
+
+int  gsl_blas_zswap (gsl_vector_complex * X,
+                     gsl_vector_complex * Y);
+
+int  gsl_blas_zcopy (const gsl_vector_complex * X,
+                     gsl_vector_complex * Y);
+
+int  gsl_blas_zaxpy (const gsl_complex alpha,
+                     const gsl_vector_complex * X,
+                     gsl_vector_complex * Y);
+
+
+int  gsl_blas_srotg (float a[], float b[], float c[], float s[]);
+
+int  gsl_blas_srotmg (float d1[], float d2[], float b1[], float b2, float P[]);
+
+int  gsl_blas_srot (gsl_vector_float * X,
+                    gsl_vector_float * Y,
+                    float c, float s);
+
+int  gsl_blas_srotm (gsl_vector_float * X,
+                     gsl_vector_float * Y,
+                     const float P[]);
+
+int  gsl_blas_drotg (double a[], double b[], double c[], double s[]);
+
+int  gsl_blas_drotmg (double d1[], double d2[], double b1[],
+                      double b2, double P[]);
+
+int  gsl_blas_drot (gsl_vector * X,
+                    gsl_vector * Y,
+                    const double c, const double s);
+
+int  gsl_blas_drotm (gsl_vector * X,
+                     gsl_vector * Y,
+                     const double P[]);
+
+
+void gsl_blas_sscal  (float  alpha, gsl_vector_float * X);
+void gsl_blas_dscal  (double alpha, gsl_vector * X);
+void gsl_blas_cscal  (const gsl_complex_float alpha, gsl_vector_complex_float * X);
+void gsl_blas_zscal  (const gsl_complex alpha, gsl_vector_complex * X);
+void gsl_blas_csscal (float  alpha, gsl_vector_complex_float * X);
+void gsl_blas_zdscal (double alpha, gsl_vector_complex * X);
+
+
+/* ===========================================================================
+ * Level 2
+ * ===========================================================================
+ */
+
+/*
+ * Routines with standard 4 prefixes (S, D, C, Z)
+ */
+int  gsl_blas_sgemv (CBLAS_TRANSPOSE_t TransA,
+                     float alpha,
+                     const gsl_matrix_float * A,
+                     const gsl_vector_float * X,
+                     float beta,
+                     gsl_vector_float * Y);
+
+int  gsl_blas_strmv (CBLAS_UPLO_t Uplo,
+                     CBLAS_TRANSPOSE_t TransA, CBLAS_DIAG_t Diag,
+                     const gsl_matrix_float * A,
+                     gsl_vector_float * X);
+
+int  gsl_blas_strsv (CBLAS_UPLO_t Uplo,
+                     CBLAS_TRANSPOSE_t TransA, CBLAS_DIAG_t Diag,
+                     const gsl_matrix_float * A,
+                     gsl_vector_float * X);
+
+int  gsl_blas_dgemv (CBLAS_TRANSPOSE_t TransA,
+                     double alpha,
+                     const gsl_matrix * A,
+                     const gsl_vector * X,
+                     double beta,
+                     gsl_vector * Y);
+
+int  gsl_blas_dtrmv (CBLAS_UPLO_t Uplo,
+                     CBLAS_TRANSPOSE_t TransA, CBLAS_DIAG_t Diag,
+                     const gsl_matrix * A,
+                     gsl_vector * X);
+
+int  gsl_blas_dtrsv (CBLAS_UPLO_t Uplo,
+                     CBLAS_TRANSPOSE_t TransA, CBLAS_DIAG_t Diag,
+                     const gsl_matrix * A,
+                     gsl_vector * X);
+
+int  gsl_blas_cgemv (CBLAS_TRANSPOSE_t TransA,
+                     const gsl_complex_float alpha,
+                     const gsl_matrix_complex_float * A,
+                     const gsl_vector_complex_float * X,
+                     const gsl_complex_float beta,
+                     gsl_vector_complex_float * Y);
+
+int  gsl_blas_ctrmv (CBLAS_UPLO_t Uplo,
+                     CBLAS_TRANSPOSE_t TransA, CBLAS_DIAG_t Diag,
+                     const gsl_matrix_complex_float * A,
+                     gsl_vector_complex_float * X);
+
+int  gsl_blas_ctrsv (CBLAS_UPLO_t Uplo,
+                     CBLAS_TRANSPOSE_t TransA, CBLAS_DIAG_t Diag,
+                     const gsl_matrix_complex_float * A,
+                     gsl_vector_complex_float * X);
+
+int  gsl_blas_zgemv (CBLAS_TRANSPOSE_t TransA,
+                     const gsl_complex alpha,
+                     const gsl_matrix_complex * A,
+                     const gsl_vector_complex * X,
+                     const gsl_complex beta,
+                     gsl_vector_complex * Y);
+
+int  gsl_blas_ztrmv (CBLAS_UPLO_t Uplo,
+                     CBLAS_TRANSPOSE_t TransA, CBLAS_DIAG_t Diag,
+                     const gsl_matrix_complex * A,
+                     gsl_vector_complex * X);
+
+int  gsl_blas_ztrsv (CBLAS_UPLO_t Uplo,
+                     CBLAS_TRANSPOSE_t TransA, CBLAS_DIAG_t Diag,
+                     const gsl_matrix_complex * A,
+                     gsl_vector_complex *X);
+
+/*
+ * Routines with S and D prefixes only
+ */
+int  gsl_blas_ssymv (CBLAS_UPLO_t Uplo,
+                     float alpha,
+                     const gsl_matrix_float * A,
+                     const gsl_vector_float * X,
+                     float beta,
+                     gsl_vector_float * Y);
+
+int  gsl_blas_sger (float alpha,
+                    const gsl_vector_float * X,
+                    const gsl_vector_float * Y,
+                    gsl_matrix_float * A);
+
+int  gsl_blas_ssyr (CBLAS_UPLO_t Uplo,
+                    float alpha,
+                    const gsl_vector_float * X,
+                    gsl_matrix_float * A);
+
+int  gsl_blas_ssyr2 (CBLAS_UPLO_t Uplo,
+                     float alpha,
+                     const gsl_vector_float * X,
+                     const gsl_vector_float * Y,
+                     gsl_matrix_float * A);
+
+int  gsl_blas_dsymv (CBLAS_UPLO_t Uplo,
+                     double alpha,
+                     const gsl_matrix * A,
+                     const gsl_vector * X,
+                     double beta,
+                     gsl_vector * Y);
+int  gsl_blas_dger (double alpha,
+                    const gsl_vector * X,
+                    const gsl_vector * Y,
+                    gsl_matrix * A);
+
+int  gsl_blas_dsyr (CBLAS_UPLO_t Uplo,
+                    double alpha,
+                    const gsl_vector * X,
+                    gsl_matrix * A);
+
+int  gsl_blas_dsyr2 (CBLAS_UPLO_t Uplo,
+                     double alpha,
+                     const gsl_vector * X,
+                     const gsl_vector * Y,
+                     gsl_matrix * A);
+
+/*
+ * Routines with C and Z prefixes only
+ */
+
+int  gsl_blas_chemv (CBLAS_UPLO_t Uplo,
+                     const gsl_complex_float alpha,
+                     const gsl_matrix_complex_float * A,
+                     const gsl_vector_complex_float * X,
+                     const gsl_complex_float beta,
+                     gsl_vector_complex_float * Y);
+
+int  gsl_blas_cgeru (const gsl_complex_float alpha,
+                     const gsl_vector_complex_float * X,
+                     const gsl_vector_complex_float * Y,
+                     gsl_matrix_complex_float * A);
+
+int  gsl_blas_cgerc (const gsl_complex_float alpha,
+                     const gsl_vector_complex_float * X,
+                     const gsl_vector_complex_float * Y,
+                     gsl_matrix_complex_float * A);
+
+int  gsl_blas_cher (CBLAS_UPLO_t Uplo,
+                    float alpha,
+                    const gsl_vector_complex_float * X,
+                    gsl_matrix_complex_float * A);
+
+int  gsl_blas_cher2 (CBLAS_UPLO_t Uplo,
+                     const gsl_complex_float alpha,
+                     const gsl_vector_complex_float * X,
+                     const gsl_vector_complex_float * Y,
+                     gsl_matrix_complex_float * A);
+
+int  gsl_blas_zhemv (CBLAS_UPLO_t Uplo,
+                     const gsl_complex alpha,
+                     const gsl_matrix_complex * A,
+                     const gsl_vector_complex * X,
+                     const gsl_complex beta,
+                     gsl_vector_complex * Y);
+
+int  gsl_blas_zgeru (const gsl_complex alpha,
+                     const gsl_vector_complex * X,
+                     const gsl_vector_complex * Y,
+                     gsl_matrix_complex * A);
+
+int  gsl_blas_zgerc (const gsl_complex alpha,
+                     const gsl_vector_complex * X,
+                     const gsl_vector_complex * Y,
+                     gsl_matrix_complex * A);
+
+int  gsl_blas_zher (CBLAS_UPLO_t Uplo,
+                    double alpha,
+                    const gsl_vector_complex * X,
+                    gsl_matrix_complex * A);
+
+int  gsl_blas_zher2 (CBLAS_UPLO_t Uplo,
+                     const gsl_complex alpha,
+                     const gsl_vector_complex * X,
+                     const gsl_vector_complex * Y,
+                     gsl_matrix_complex * A);
+
+/*
+ * ===========================================================================
+ * Prototypes for level 3 BLAS
+ * ===========================================================================
+ */
+
+/*
+ * Routines with standard 4 prefixes (S, D, C, Z)
+ */
+int  gsl_blas_sgemm (CBLAS_TRANSPOSE_t TransA,
+                     CBLAS_TRANSPOSE_t TransB,
+                     float alpha,
+                     const gsl_matrix_float * A,
+                     const gsl_matrix_float * B,
+                     float beta,
+                     gsl_matrix_float * C);
+
+int  gsl_blas_ssymm (CBLAS_SIDE_t Side, CBLAS_UPLO_t Uplo,
+                     float alpha,
+                     const gsl_matrix_float * A,
+                     const gsl_matrix_float * B,
+                     float beta,
+                     gsl_matrix_float * C);
+
+int  gsl_blas_ssyrk (CBLAS_UPLO_t Uplo, CBLAS_TRANSPOSE_t Trans,
+                     float alpha,
+                     const gsl_matrix_float * A,
+                     float beta,
+                     gsl_matrix_float * C);
+
+int  gsl_blas_ssyr2k (CBLAS_UPLO_t Uplo, CBLAS_TRANSPOSE_t Trans,
+                      float alpha,
+                      const gsl_matrix_float * A,
+                      const gsl_matrix_float * B,
+                      float beta,
+                      gsl_matrix_float * C);
+
+int  gsl_blas_strmm (CBLAS_SIDE_t Side,
+                     CBLAS_UPLO_t Uplo, CBLAS_TRANSPOSE_t TransA,
+                     CBLAS_DIAG_t Diag,
+                     float alpha,
+                     const gsl_matrix_float * A,
+                     gsl_matrix_float * B);
+
+int  gsl_blas_strsm (CBLAS_SIDE_t Side,
+                     CBLAS_UPLO_t Uplo, CBLAS_TRANSPOSE_t TransA,
+                     CBLAS_DIAG_t Diag,
+                     float alpha,
+                     const gsl_matrix_float * A,
+                     gsl_matrix_float * B);
+
+int  gsl_blas_dgemm (CBLAS_TRANSPOSE_t TransA,
+                     CBLAS_TRANSPOSE_t TransB,
+                     double alpha,
+                     const gsl_matrix * A,
+                     const gsl_matrix * B,
+                     double beta,
+                     gsl_matrix * C);
+
+int  gsl_blas_dsymm (CBLAS_SIDE_t Side,
+                     CBLAS_UPLO_t Uplo,
+                     double alpha,
+                     const gsl_matrix * A,
+                     const gsl_matrix * B,
+                     double beta,
+                     gsl_matrix * C);
+
+int  gsl_blas_dsyrk (CBLAS_UPLO_t Uplo,
+                     CBLAS_TRANSPOSE_t Trans,
+                     double alpha,
+                     const gsl_matrix * A,
+                     double beta,
+                     gsl_matrix * C);
+
+int  gsl_blas_dsyr2k (CBLAS_UPLO_t Uplo,
+                      CBLAS_TRANSPOSE_t Trans,
+                      double alpha,
+                      const  gsl_matrix * A,
+                      const  gsl_matrix * B,
+                      double beta,
+                      gsl_matrix * C);
+
+int  gsl_blas_dtrmm (CBLAS_SIDE_t Side,
+                     CBLAS_UPLO_t Uplo, CBLAS_TRANSPOSE_t TransA,
+                     CBLAS_DIAG_t Diag,
+                     double alpha,
+                     const gsl_matrix * A,
+                     gsl_matrix * B);
+
+int  gsl_blas_dtrsm (CBLAS_SIDE_t Side,
+                     CBLAS_UPLO_t Uplo, CBLAS_TRANSPOSE_t TransA,
+                     CBLAS_DIAG_t Diag,
+                     double alpha,
+                     const gsl_matrix * A,
+                     gsl_matrix * B);
+
+int  gsl_blas_cgemm (CBLAS_TRANSPOSE_t TransA,
+                     CBLAS_TRANSPOSE_t TransB,
+                     const gsl_complex_float alpha,
+                     const gsl_matrix_complex_float * A,
+                     const gsl_matrix_complex_float * B,
+                     const gsl_complex_float beta,
+                     gsl_matrix_complex_float * C);
+
+int  gsl_blas_csymm (CBLAS_SIDE_t Side,
+                     CBLAS_UPLO_t Uplo,
+                     const gsl_complex_float alpha,
+                     const gsl_matrix_complex_float * A,
+                     const gsl_matrix_complex_float * B,
+                     const gsl_complex_float beta,
+                     gsl_matrix_complex_float * C);
+
+int  gsl_blas_csyrk (CBLAS_UPLO_t Uplo,
+                     CBLAS_TRANSPOSE_t Trans,
+                     const gsl_complex_float alpha,
+                     const gsl_matrix_complex_float * A,
+                     const gsl_complex_float beta,
+                     gsl_matrix_complex_float * C);
+
+int  gsl_blas_csyr2k (CBLAS_UPLO_t Uplo,
+                      CBLAS_TRANSPOSE_t Trans,
+                      const gsl_complex_float alpha,
+                      const gsl_matrix_complex_float * A,
+                      const gsl_matrix_complex_float * B,
+                      const gsl_complex_float beta,
+                      gsl_matrix_complex_float * C);
+
+int  gsl_blas_ctrmm (CBLAS_SIDE_t Side,
+                     CBLAS_UPLO_t Uplo, CBLAS_TRANSPOSE_t TransA,
+                     CBLAS_DIAG_t Diag,
+                     const gsl_complex_float alpha,
+                     const gsl_matrix_complex_float * A,
+                     gsl_matrix_complex_float * B);
+
+int  gsl_blas_ctrsm (CBLAS_SIDE_t Side,
+                     CBLAS_UPLO_t Uplo, CBLAS_TRANSPOSE_t TransA,
+                     CBLAS_DIAG_t Diag,
+                     const gsl_complex_float alpha,
+                     const gsl_matrix_complex_float * A,
+                     gsl_matrix_complex_float * B);
+
+int  gsl_blas_zgemm (CBLAS_TRANSPOSE_t TransA,
+                     CBLAS_TRANSPOSE_t TransB,
+                     const gsl_complex alpha,
+                     const gsl_matrix_complex * A,
+                     const gsl_matrix_complex * B,
+                     const gsl_complex beta,
+                     gsl_matrix_complex * C);
+
+int  gsl_blas_zsymm (CBLAS_SIDE_t Side,
+                     CBLAS_UPLO_t Uplo,
+                     const gsl_complex alpha,
+                     const gsl_matrix_complex * A,
+                     const gsl_matrix_complex * B,
+                     const gsl_complex beta,
+                     gsl_matrix_complex * C);
+
+int  gsl_blas_zsyrk (CBLAS_UPLO_t Uplo,
+                     CBLAS_TRANSPOSE_t Trans,
+                     const gsl_complex alpha,
+                     const gsl_matrix_complex * A,
+                     const gsl_complex beta,
+                     gsl_matrix_complex * C);
+
+int  gsl_blas_zsyr2k (CBLAS_UPLO_t Uplo,
+                      CBLAS_TRANSPOSE_t Trans,
+                      const gsl_complex alpha,
+                      const gsl_matrix_complex * A,
+                      const gsl_matrix_complex * B,
+                      const gsl_complex beta,
+                      gsl_matrix_complex *C);
+
+int  gsl_blas_ztrmm (CBLAS_SIDE_t Side,
+                     CBLAS_UPLO_t Uplo, CBLAS_TRANSPOSE_t TransA,
+                     CBLAS_DIAG_t Diag,
+                     const gsl_complex alpha,
+                     const gsl_matrix_complex * A,
+                     gsl_matrix_complex * B);
+
+int  gsl_blas_ztrsm (CBLAS_SIDE_t Side,
+                     CBLAS_UPLO_t Uplo, CBLAS_TRANSPOSE_t TransA,
+                     CBLAS_DIAG_t Diag,
+                     const gsl_complex alpha,
+                     const gsl_matrix_complex * A,
+                     gsl_matrix_complex * B);
+
+/*
+ * Routines with prefixes C and Z only
+ */
+int  gsl_blas_chemm (CBLAS_SIDE_t Side,
+                     CBLAS_UPLO_t Uplo,
+                     const gsl_complex_float alpha,
+                     const gsl_matrix_complex_float * A,
+                     const gsl_matrix_complex_float * B,
+                     const gsl_complex_float beta,
+                     gsl_matrix_complex_float * C);
+
+int  gsl_blas_cherk (CBLAS_UPLO_t Uplo,
+                     CBLAS_TRANSPOSE_t Trans,
+                     float alpha,
+                     const gsl_matrix_complex_float * A,
+                     float beta,
+                     gsl_matrix_complex_float * C);
+
+int  gsl_blas_cher2k (CBLAS_UPLO_t Uplo,
+                      CBLAS_TRANSPOSE_t Trans,
+                      const gsl_complex_float alpha,
+                      const gsl_matrix_complex_float * A,
+                      const gsl_matrix_complex_float * B,
+                      float beta,
+                      gsl_matrix_complex_float * C);
+
+int  gsl_blas_zhemm (CBLAS_SIDE_t Side,
+                     CBLAS_UPLO_t Uplo,
+                     const gsl_complex alpha,
+                     const gsl_matrix_complex * A,
+                     const gsl_matrix_complex * B,
+                     const gsl_complex beta,
+                     gsl_matrix_complex * C);
+
+int  gsl_blas_zherk (CBLAS_UPLO_t Uplo,
+                     CBLAS_TRANSPOSE_t Trans,
+                     double alpha,
+                     const gsl_matrix_complex * A,
+                     double beta,
+                     gsl_matrix_complex * C);
+
+int  gsl_blas_zher2k (CBLAS_UPLO_t Uplo,
+                      CBLAS_TRANSPOSE_t Trans,
+                      const gsl_complex alpha,
+                      const gsl_matrix_complex * A,
+                      const gsl_matrix_complex * B,
+                      double beta,
+                      gsl_matrix_complex * C);
+
+
+__END_DECLS
+
+#endif /* __GSL_BLAS_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_blas_types.h b/util/X86LINUX64/include/gsl/gsl_blas_types.h
new file mode 100644 (file)
index 0000000..923edb3
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_blas_types.h
@@ -0,0 +1,54 @@
+/* blas/gsl_blas_types.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/*
+ * Author:  G. Jungman
+ */
+/* Based on draft BLAST C interface specification  [Jul 7 1998]
+ */
+#ifndef __GSL_BLAS_TYPES_H__
+#define __GSL_BLAS_TYPES_H__
+
+#include <gsl/gsl_cblas.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef  CBLAS_INDEX  CBLAS_INDEX_t;
+typedef  enum CBLAS_ORDER       CBLAS_ORDER_t;
+typedef  enum CBLAS_TRANSPOSE   CBLAS_TRANSPOSE_t;
+typedef  enum CBLAS_UPLO        CBLAS_UPLO_t;
+typedef  enum CBLAS_DIAG        CBLAS_DIAG_t;
+typedef  enum CBLAS_SIDE        CBLAS_SIDE_t;
+
+/* typedef  gsl_complex  COMPLEX; */
+
+__END_DECLS
+
+
+#endif /* __GSL_BLAS_TYPES_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block.h b/util/X86LINUX64/include/gsl/gsl_block.h
new file mode 100644 (file)
index 0000000..f1f9ef8
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block.h
@@ -0,0 +1,24 @@
+#ifndef __GSL_BLOCK_H__
+#define __GSL_BLOCK_H__
+
+#include <gsl/gsl_block_complex_long_double.h>
+#include <gsl/gsl_block_complex_double.h>
+#include <gsl/gsl_block_complex_float.h>
+
+#include <gsl/gsl_block_long_double.h>
+#include <gsl/gsl_block_double.h>
+#include <gsl/gsl_block_float.h>
+
+#include <gsl/gsl_block_ulong.h>
+#include <gsl/gsl_block_long.h>
+
+#include <gsl/gsl_block_uint.h>
+#include <gsl/gsl_block_int.h>
+
+#include <gsl/gsl_block_ushort.h>
+#include <gsl/gsl_block_short.h>
+
+#include <gsl/gsl_block_uchar.h>
+#include <gsl/gsl_block_char.h>
+
+#endif /* __GSL_BLOCK_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block_char.h b/util/X86LINUX64/include/gsl/gsl_block_char.h
new file mode 100644 (file)
index 0000000..70bf969
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block_char.h
@@ -0,0 +1,65 @@
+/* block/gsl_block_char.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BLOCK_CHAR_H__
+#define __GSL_BLOCK_CHAR_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_block_char_struct
+{
+  size_t size;
+  char *data;
+};
+
+typedef struct gsl_block_char_struct gsl_block_char;
+
+gsl_block_char *gsl_block_char_alloc (const size_t n);
+gsl_block_char *gsl_block_char_calloc (const size_t n);
+void gsl_block_char_free (gsl_block_char * b);
+
+int gsl_block_char_fread (FILE * stream, gsl_block_char * b);
+int gsl_block_char_fwrite (FILE * stream, const gsl_block_char * b);
+int gsl_block_char_fscanf (FILE * stream, gsl_block_char * b);
+int gsl_block_char_fprintf (FILE * stream, const gsl_block_char * b, const char *format);
+
+int gsl_block_char_raw_fread (FILE * stream, char * b, const size_t n, const size_t stride);
+int gsl_block_char_raw_fwrite (FILE * stream, const char * b, const size_t n, const size_t stride);
+int gsl_block_char_raw_fscanf (FILE * stream, char * b, const size_t n, const size_t stride);
+int gsl_block_char_raw_fprintf (FILE * stream, const char * b, const size_t n, const size_t stride, const char *format);
+
+size_t gsl_block_char_size (const gsl_block_char * b);
+char * gsl_block_char_data (const gsl_block_char * b);
+
+__END_DECLS
+
+#endif /* __GSL_BLOCK_CHAR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block_complex_double.h b/util/X86LINUX64/include/gsl/gsl_block_complex_double.h
new file mode 100644 (file)
index 0000000..bcf66c0
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block_complex_double.h
@@ -0,0 +1,65 @@
+/* block/gsl_block_complex_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BLOCK_COMPLEX_DOUBLE_H__
+#define __GSL_BLOCK_COMPLEX_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_block_complex_struct
+{
+  size_t size;
+  double *data;
+};
+
+typedef struct gsl_block_complex_struct gsl_block_complex;
+
+gsl_block_complex *gsl_block_complex_alloc (const size_t n);
+gsl_block_complex *gsl_block_complex_calloc (const size_t n);
+void gsl_block_complex_free (gsl_block_complex * b);
+
+int gsl_block_complex_fread (FILE * stream, gsl_block_complex * b);
+int gsl_block_complex_fwrite (FILE * stream, const gsl_block_complex * b);
+int gsl_block_complex_fscanf (FILE * stream, gsl_block_complex * b);
+int gsl_block_complex_fprintf (FILE * stream, const gsl_block_complex * b, const char *format);
+
+int gsl_block_complex_raw_fread (FILE * stream, double * b, const size_t n, const size_t stride);
+int gsl_block_complex_raw_fwrite (FILE * stream, const double * b, const size_t n, const size_t stride);
+int gsl_block_complex_raw_fscanf (FILE * stream, double * b, const size_t n, const size_t stride);
+int gsl_block_complex_raw_fprintf (FILE * stream, const double * b, const size_t n, const size_t stride, const char *format);
+
+size_t gsl_block_complex_size (const gsl_block_complex * b);
+double * gsl_block_complex_data (const gsl_block_complex * b);
+
+__END_DECLS
+
+#endif /* __GSL_BLOCK_COMPLEX_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block_complex_float.h b/util/X86LINUX64/include/gsl/gsl_block_complex_float.h
new file mode 100644 (file)
index 0000000..03595dc
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block_complex_float.h
@@ -0,0 +1,65 @@
+/* block/gsl_block_complex_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BLOCK_COMPLEX_FLOAT_H__
+#define __GSL_BLOCK_COMPLEX_FLOAT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_block_complex_float_struct
+{
+  size_t size;
+  float *data;
+};
+
+typedef struct gsl_block_complex_float_struct gsl_block_complex_float;
+
+gsl_block_complex_float *gsl_block_complex_float_alloc (const size_t n);
+gsl_block_complex_float *gsl_block_complex_float_calloc (const size_t n);
+void gsl_block_complex_float_free (gsl_block_complex_float * b);
+
+int gsl_block_complex_float_fread (FILE * stream, gsl_block_complex_float * b);
+int gsl_block_complex_float_fwrite (FILE * stream, const gsl_block_complex_float * b);
+int gsl_block_complex_float_fscanf (FILE * stream, gsl_block_complex_float * b);
+int gsl_block_complex_float_fprintf (FILE * stream, const gsl_block_complex_float * b, const char *format);
+
+int gsl_block_complex_float_raw_fread (FILE * stream, float * b, const size_t n, const size_t stride);
+int gsl_block_complex_float_raw_fwrite (FILE * stream, const float * b, const size_t n, const size_t stride);
+int gsl_block_complex_float_raw_fscanf (FILE * stream, float * b, const size_t n, const size_t stride);
+int gsl_block_complex_float_raw_fprintf (FILE * stream, const float * b, const size_t n, const size_t stride, const char *format);
+
+size_t gsl_block_complex_float_size (const gsl_block_complex_float * b);
+float * gsl_block_complex_float_data (const gsl_block_complex_float * b);
+
+__END_DECLS
+
+#endif /* __GSL_BLOCK_COMPLEX_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block_complex_long_double.h b/util/X86LINUX64/include/gsl/gsl_block_complex_long_double.h
new file mode 100644 (file)
index 0000000..eb0c605
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block_complex_long_double.h
@@ -0,0 +1,65 @@
+/* block/gsl_block_complex_long_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BLOCK_COMPLEX_LONG_DOUBLE_H__
+#define __GSL_BLOCK_COMPLEX_LONG_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_block_complex_long_double_struct
+{
+  size_t size;
+  long double *data;
+};
+
+typedef struct gsl_block_complex_long_double_struct gsl_block_complex_long_double;
+
+gsl_block_complex_long_double *gsl_block_complex_long_double_alloc (const size_t n);
+gsl_block_complex_long_double *gsl_block_complex_long_double_calloc (const size_t n);
+void gsl_block_complex_long_double_free (gsl_block_complex_long_double * b);
+
+int gsl_block_complex_long_double_fread (FILE * stream, gsl_block_complex_long_double * b);
+int gsl_block_complex_long_double_fwrite (FILE * stream, const gsl_block_complex_long_double * b);
+int gsl_block_complex_long_double_fscanf (FILE * stream, gsl_block_complex_long_double * b);
+int gsl_block_complex_long_double_fprintf (FILE * stream, const gsl_block_complex_long_double * b, const char *format);
+
+int gsl_block_complex_long_double_raw_fread (FILE * stream, long double * b, const size_t n, const size_t stride);
+int gsl_block_complex_long_double_raw_fwrite (FILE * stream, const long double * b, const size_t n, const size_t stride);
+int gsl_block_complex_long_double_raw_fscanf (FILE * stream, long double * b, const size_t n, const size_t stride);
+int gsl_block_complex_long_double_raw_fprintf (FILE * stream, const long double * b, const size_t n, const size_t stride, const char *format);
+
+size_t gsl_block_complex_long_double_size (const gsl_block_complex_long_double * b);
+long double * gsl_block_complex_long_double_data (const gsl_block_complex_long_double * b);
+
+__END_DECLS
+
+#endif /* __GSL_BLOCK_COMPLEX_LONG_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block_double.h b/util/X86LINUX64/include/gsl/gsl_block_double.h
new file mode 100644 (file)
index 0000000..3a95f4d
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block_double.h
@@ -0,0 +1,65 @@
+/* block/gsl_block_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BLOCK_DOUBLE_H__
+#define __GSL_BLOCK_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_block_struct
+{
+  size_t size;
+  double *data;
+};
+
+typedef struct gsl_block_struct gsl_block;
+
+gsl_block *gsl_block_alloc (const size_t n);
+gsl_block *gsl_block_calloc (const size_t n);
+void gsl_block_free (gsl_block * b);
+
+int gsl_block_fread (FILE * stream, gsl_block * b);
+int gsl_block_fwrite (FILE * stream, const gsl_block * b);
+int gsl_block_fscanf (FILE * stream, gsl_block * b);
+int gsl_block_fprintf (FILE * stream, const gsl_block * b, const char *format);
+
+int gsl_block_raw_fread (FILE * stream, double * b, const size_t n, const size_t stride);
+int gsl_block_raw_fwrite (FILE * stream, const double * b, const size_t n, const size_t stride);
+int gsl_block_raw_fscanf (FILE * stream, double * b, const size_t n, const size_t stride);
+int gsl_block_raw_fprintf (FILE * stream, const double * b, const size_t n, const size_t stride, const char *format);
+
+size_t gsl_block_size (const gsl_block * b);
+double * gsl_block_data (const gsl_block * b);
+
+__END_DECLS
+
+#endif /* __GSL_BLOCK_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block_float.h b/util/X86LINUX64/include/gsl/gsl_block_float.h
new file mode 100644 (file)
index 0000000..f1c3fb3
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block_float.h
@@ -0,0 +1,65 @@
+/* block/gsl_block_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BLOCK_FLOAT_H__
+#define __GSL_BLOCK_FLOAT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_block_float_struct
+{
+  size_t size;
+  float *data;
+};
+
+typedef struct gsl_block_float_struct gsl_block_float;
+
+gsl_block_float *gsl_block_float_alloc (const size_t n);
+gsl_block_float *gsl_block_float_calloc (const size_t n);
+void gsl_block_float_free (gsl_block_float * b);
+
+int gsl_block_float_fread (FILE * stream, gsl_block_float * b);
+int gsl_block_float_fwrite (FILE * stream, const gsl_block_float * b);
+int gsl_block_float_fscanf (FILE * stream, gsl_block_float * b);
+int gsl_block_float_fprintf (FILE * stream, const gsl_block_float * b, const char *format);
+
+int gsl_block_float_raw_fread (FILE * stream, float * b, const size_t n, const size_t stride);
+int gsl_block_float_raw_fwrite (FILE * stream, const float * b, const size_t n, const size_t stride);
+int gsl_block_float_raw_fscanf (FILE * stream, float * b, const size_t n, const size_t stride);
+int gsl_block_float_raw_fprintf (FILE * stream, const float * b, const size_t n, const size_t stride, const char *format);
+
+size_t gsl_block_float_size (const gsl_block_float * b);
+float * gsl_block_float_data (const gsl_block_float * b);
+
+__END_DECLS
+
+#endif /* __GSL_BLOCK_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block_int.h b/util/X86LINUX64/include/gsl/gsl_block_int.h
new file mode 100644 (file)
index 0000000..2213f47
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block_int.h
@@ -0,0 +1,65 @@
+/* block/gsl_block_int.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BLOCK_INT_H__
+#define __GSL_BLOCK_INT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_block_int_struct
+{
+  size_t size;
+  int *data;
+};
+
+typedef struct gsl_block_int_struct gsl_block_int;
+
+gsl_block_int *gsl_block_int_alloc (const size_t n);
+gsl_block_int *gsl_block_int_calloc (const size_t n);
+void gsl_block_int_free (gsl_block_int * b);
+
+int gsl_block_int_fread (FILE * stream, gsl_block_int * b);
+int gsl_block_int_fwrite (FILE * stream, const gsl_block_int * b);
+int gsl_block_int_fscanf (FILE * stream, gsl_block_int * b);
+int gsl_block_int_fprintf (FILE * stream, const gsl_block_int * b, const char *format);
+
+int gsl_block_int_raw_fread (FILE * stream, int * b, const size_t n, const size_t stride);
+int gsl_block_int_raw_fwrite (FILE * stream, const int * b, const size_t n, const size_t stride);
+int gsl_block_int_raw_fscanf (FILE * stream, int * b, const size_t n, const size_t stride);
+int gsl_block_int_raw_fprintf (FILE * stream, const int * b, const size_t n, const size_t stride, const char *format);
+
+size_t gsl_block_int_size (const gsl_block_int * b);
+int * gsl_block_int_data (const gsl_block_int * b);
+
+__END_DECLS
+
+#endif /* __GSL_BLOCK_INT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block_long.h b/util/X86LINUX64/include/gsl/gsl_block_long.h
new file mode 100644 (file)
index 0000000..0c30aa5
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block_long.h
@@ -0,0 +1,65 @@
+/* block/gsl_block_long.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BLOCK_LONG_H__
+#define __GSL_BLOCK_LONG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_block_long_struct
+{
+  size_t size;
+  long *data;
+};
+
+typedef struct gsl_block_long_struct gsl_block_long;
+
+gsl_block_long *gsl_block_long_alloc (const size_t n);
+gsl_block_long *gsl_block_long_calloc (const size_t n);
+void gsl_block_long_free (gsl_block_long * b);
+
+int gsl_block_long_fread (FILE * stream, gsl_block_long * b);
+int gsl_block_long_fwrite (FILE * stream, const gsl_block_long * b);
+int gsl_block_long_fscanf (FILE * stream, gsl_block_long * b);
+int gsl_block_long_fprintf (FILE * stream, const gsl_block_long * b, const char *format);
+
+int gsl_block_long_raw_fread (FILE * stream, long * b, const size_t n, const size_t stride);
+int gsl_block_long_raw_fwrite (FILE * stream, const long * b, const size_t n, const size_t stride);
+int gsl_block_long_raw_fscanf (FILE * stream, long * b, const size_t n, const size_t stride);
+int gsl_block_long_raw_fprintf (FILE * stream, const long * b, const size_t n, const size_t stride, const char *format);
+
+size_t gsl_block_long_size (const gsl_block_long * b);
+long * gsl_block_long_data (const gsl_block_long * b);
+
+__END_DECLS
+
+#endif /* __GSL_BLOCK_LONG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block_long_double.h b/util/X86LINUX64/include/gsl/gsl_block_long_double.h
new file mode 100644 (file)
index 0000000..639cd81
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block_long_double.h
@@ -0,0 +1,65 @@
+/* block/gsl_block_long_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BLOCK_LONG_DOUBLE_H__
+#define __GSL_BLOCK_LONG_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_block_long_double_struct
+{
+  size_t size;
+  long double *data;
+};
+
+typedef struct gsl_block_long_double_struct gsl_block_long_double;
+
+gsl_block_long_double *gsl_block_long_double_alloc (const size_t n);
+gsl_block_long_double *gsl_block_long_double_calloc (const size_t n);
+void gsl_block_long_double_free (gsl_block_long_double * b);
+
+int gsl_block_long_double_fread (FILE * stream, gsl_block_long_double * b);
+int gsl_block_long_double_fwrite (FILE * stream, const gsl_block_long_double * b);
+int gsl_block_long_double_fscanf (FILE * stream, gsl_block_long_double * b);
+int gsl_block_long_double_fprintf (FILE * stream, const gsl_block_long_double * b, const char *format);
+
+int gsl_block_long_double_raw_fread (FILE * stream, long double * b, const size_t n, const size_t stride);
+int gsl_block_long_double_raw_fwrite (FILE * stream, const long double * b, const size_t n, const size_t stride);
+int gsl_block_long_double_raw_fscanf (FILE * stream, long double * b, const size_t n, const size_t stride);
+int gsl_block_long_double_raw_fprintf (FILE * stream, const long double * b, const size_t n, const size_t stride, const char *format);
+
+size_t gsl_block_long_double_size (const gsl_block_long_double * b);
+long double * gsl_block_long_double_data (const gsl_block_long_double * b);
+
+__END_DECLS
+
+#endif /* __GSL_BLOCK_LONG_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block_short.h b/util/X86LINUX64/include/gsl/gsl_block_short.h
new file mode 100644 (file)
index 0000000..9744775
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block_short.h
@@ -0,0 +1,65 @@
+/* block/gsl_block_short.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BLOCK_SHORT_H__
+#define __GSL_BLOCK_SHORT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_block_short_struct
+{
+  size_t size;
+  short *data;
+};
+
+typedef struct gsl_block_short_struct gsl_block_short;
+
+gsl_block_short *gsl_block_short_alloc (const size_t n);
+gsl_block_short *gsl_block_short_calloc (const size_t n);
+void gsl_block_short_free (gsl_block_short * b);
+
+int gsl_block_short_fread (FILE * stream, gsl_block_short * b);
+int gsl_block_short_fwrite (FILE * stream, const gsl_block_short * b);
+int gsl_block_short_fscanf (FILE * stream, gsl_block_short * b);
+int gsl_block_short_fprintf (FILE * stream, const gsl_block_short * b, const char *format);
+
+int gsl_block_short_raw_fread (FILE * stream, short * b, const size_t n, const size_t stride);
+int gsl_block_short_raw_fwrite (FILE * stream, const short * b, const size_t n, const size_t stride);
+int gsl_block_short_raw_fscanf (FILE * stream, short * b, const size_t n, const size_t stride);
+int gsl_block_short_raw_fprintf (FILE * stream, const short * b, const size_t n, const size_t stride, const char *format);
+
+size_t gsl_block_short_size (const gsl_block_short * b);
+short * gsl_block_short_data (const gsl_block_short * b);
+
+__END_DECLS
+
+#endif /* __GSL_BLOCK_SHORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block_uchar.h b/util/X86LINUX64/include/gsl/gsl_block_uchar.h
new file mode 100644 (file)
index 0000000..58cf789
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block_uchar.h
@@ -0,0 +1,65 @@
+/* block/gsl_block_uchar.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BLOCK_UCHAR_H__
+#define __GSL_BLOCK_UCHAR_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_block_uchar_struct
+{
+  size_t size;
+  unsigned char *data;
+};
+
+typedef struct gsl_block_uchar_struct gsl_block_uchar;
+
+gsl_block_uchar *gsl_block_uchar_alloc (const size_t n);
+gsl_block_uchar *gsl_block_uchar_calloc (const size_t n);
+void gsl_block_uchar_free (gsl_block_uchar * b);
+
+int gsl_block_uchar_fread (FILE * stream, gsl_block_uchar * b);
+int gsl_block_uchar_fwrite (FILE * stream, const gsl_block_uchar * b);
+int gsl_block_uchar_fscanf (FILE * stream, gsl_block_uchar * b);
+int gsl_block_uchar_fprintf (FILE * stream, const gsl_block_uchar * b, const char *format);
+
+int gsl_block_uchar_raw_fread (FILE * stream, unsigned char * b, const size_t n, const size_t stride);
+int gsl_block_uchar_raw_fwrite (FILE * stream, const unsigned char * b, const size_t n, const size_t stride);
+int gsl_block_uchar_raw_fscanf (FILE * stream, unsigned char * b, const size_t n, const size_t stride);
+int gsl_block_uchar_raw_fprintf (FILE * stream, const unsigned char * b, const size_t n, const size_t stride, const char *format);
+
+size_t gsl_block_uchar_size (const gsl_block_uchar * b);
+unsigned char * gsl_block_uchar_data (const gsl_block_uchar * b);
+
+__END_DECLS
+
+#endif /* __GSL_BLOCK_UCHAR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block_uint.h b/util/X86LINUX64/include/gsl/gsl_block_uint.h
new file mode 100644 (file)
index 0000000..52cf2cb
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block_uint.h
@@ -0,0 +1,65 @@
+/* block/gsl_block_uint.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BLOCK_UINT_H__
+#define __GSL_BLOCK_UINT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_block_uint_struct
+{
+  size_t size;
+  unsigned int *data;
+};
+
+typedef struct gsl_block_uint_struct gsl_block_uint;
+
+gsl_block_uint *gsl_block_uint_alloc (const size_t n);
+gsl_block_uint *gsl_block_uint_calloc (const size_t n);
+void gsl_block_uint_free (gsl_block_uint * b);
+
+int gsl_block_uint_fread (FILE * stream, gsl_block_uint * b);
+int gsl_block_uint_fwrite (FILE * stream, const gsl_block_uint * b);
+int gsl_block_uint_fscanf (FILE * stream, gsl_block_uint * b);
+int gsl_block_uint_fprintf (FILE * stream, const gsl_block_uint * b, const char *format);
+
+int gsl_block_uint_raw_fread (FILE * stream, unsigned int * b, const size_t n, const size_t stride);
+int gsl_block_uint_raw_fwrite (FILE * stream, const unsigned int * b, const size_t n, const size_t stride);
+int gsl_block_uint_raw_fscanf (FILE * stream, unsigned int * b, const size_t n, const size_t stride);
+int gsl_block_uint_raw_fprintf (FILE * stream, const unsigned int * b, const size_t n, const size_t stride, const char *format);
+
+size_t gsl_block_uint_size (const gsl_block_uint * b);
+unsigned int * gsl_block_uint_data (const gsl_block_uint * b);
+
+__END_DECLS
+
+#endif /* __GSL_BLOCK_UINT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block_ulong.h b/util/X86LINUX64/include/gsl/gsl_block_ulong.h
new file mode 100644 (file)
index 0000000..863ff47
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block_ulong.h
@@ -0,0 +1,65 @@
+/* block/gsl_block_ulong.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BLOCK_ULONG_H__
+#define __GSL_BLOCK_ULONG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_block_ulong_struct
+{
+  size_t size;
+  unsigned long *data;
+};
+
+typedef struct gsl_block_ulong_struct gsl_block_ulong;
+
+gsl_block_ulong *gsl_block_ulong_alloc (const size_t n);
+gsl_block_ulong *gsl_block_ulong_calloc (const size_t n);
+void gsl_block_ulong_free (gsl_block_ulong * b);
+
+int gsl_block_ulong_fread (FILE * stream, gsl_block_ulong * b);
+int gsl_block_ulong_fwrite (FILE * stream, const gsl_block_ulong * b);
+int gsl_block_ulong_fscanf (FILE * stream, gsl_block_ulong * b);
+int gsl_block_ulong_fprintf (FILE * stream, const gsl_block_ulong * b, const char *format);
+
+int gsl_block_ulong_raw_fread (FILE * stream, unsigned long * b, const size_t n, const size_t stride);
+int gsl_block_ulong_raw_fwrite (FILE * stream, const unsigned long * b, const size_t n, const size_t stride);
+int gsl_block_ulong_raw_fscanf (FILE * stream, unsigned long * b, const size_t n, const size_t stride);
+int gsl_block_ulong_raw_fprintf (FILE * stream, const unsigned long * b, const size_t n, const size_t stride, const char *format);
+
+size_t gsl_block_ulong_size (const gsl_block_ulong * b);
+unsigned long * gsl_block_ulong_data (const gsl_block_ulong * b);
+
+__END_DECLS
+
+#endif /* __GSL_BLOCK_ULONG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_block_ushort.h b/util/X86LINUX64/include/gsl/gsl_block_ushort.h
new file mode 100644 (file)
index 0000000..24ad7db
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_block_ushort.h
@@ -0,0 +1,65 @@
+/* block/gsl_block_ushort.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BLOCK_USHORT_H__
+#define __GSL_BLOCK_USHORT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_block_ushort_struct
+{
+  size_t size;
+  unsigned short *data;
+};
+
+typedef struct gsl_block_ushort_struct gsl_block_ushort;
+
+gsl_block_ushort *gsl_block_ushort_alloc (const size_t n);
+gsl_block_ushort *gsl_block_ushort_calloc (const size_t n);
+void gsl_block_ushort_free (gsl_block_ushort * b);
+
+int gsl_block_ushort_fread (FILE * stream, gsl_block_ushort * b);
+int gsl_block_ushort_fwrite (FILE * stream, const gsl_block_ushort * b);
+int gsl_block_ushort_fscanf (FILE * stream, gsl_block_ushort * b);
+int gsl_block_ushort_fprintf (FILE * stream, const gsl_block_ushort * b, const char *format);
+
+int gsl_block_ushort_raw_fread (FILE * stream, unsigned short * b, const size_t n, const size_t stride);
+int gsl_block_ushort_raw_fwrite (FILE * stream, const unsigned short * b, const size_t n, const size_t stride);
+int gsl_block_ushort_raw_fscanf (FILE * stream, unsigned short * b, const size_t n, const size_t stride);
+int gsl_block_ushort_raw_fprintf (FILE * stream, const unsigned short * b, const size_t n, const size_t stride, const char *format);
+
+size_t gsl_block_ushort_size (const gsl_block_ushort * b);
+unsigned short * gsl_block_ushort_data (const gsl_block_ushort * b);
+
+__END_DECLS
+
+#endif /* __GSL_BLOCK_USHORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_bspline.h b/util/X86LINUX64/include/gsl/gsl_bspline.h
new file mode 100644 (file)
index 0000000..7b89a10
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_bspline.h
@@ -0,0 +1,114 @@
+/* bspline/gsl_bspline.h
+ *
+ * Copyright (C) 2006 Patrick Alken
+ * Copyright (C) 2008 Rhys Ulerich
+ *
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_BSPLINE_H__
+#define __GSL_BSPLINE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_vector.h>
+#include <gsl/gsl_matrix.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct
+{
+    size_t k; /* spline order */
+    size_t km1; /* k - 1 (polynomial order) */
+    size_t l; /* number of polynomial pieces on interval */
+    size_t nbreak; /* number of breakpoints (l + 1) */
+    size_t n; /* number of bspline basis functions (l + k - 1) */
+
+    gsl_vector *knots; /* knots vector */
+    gsl_vector *deltal; /* left delta */
+    gsl_vector *deltar; /* right delta */
+    gsl_vector *B; /* temporary spline results */
+} gsl_bspline_workspace;
+
+typedef struct
+{
+    size_t k; /* spline order */
+    gsl_matrix *A; /* work matrix */
+    gsl_matrix *dB; /* temporary derivative results */
+} gsl_bspline_deriv_workspace;
+
+gsl_bspline_workspace *
+gsl_bspline_alloc(const size_t k, const size_t nbreak);
+
+void gsl_bspline_free(gsl_bspline_workspace *w);
+
+size_t gsl_bspline_ncoeffs(gsl_bspline_workspace * w);
+size_t gsl_bspline_order(gsl_bspline_workspace * w);
+size_t gsl_bspline_nbreak(gsl_bspline_workspace * w);
+double gsl_bspline_breakpoint(size_t i, gsl_bspline_workspace * w);
+double gsl_bspline_greville_abscissa(size_t i, gsl_bspline_workspace *w);
+
+int
+gsl_bspline_knots(const gsl_vector *breakpts, gsl_bspline_workspace *w);
+
+int gsl_bspline_knots_uniform(const double a, const double b,
+                              gsl_bspline_workspace *w);
+
+int
+gsl_bspline_eval(const double x, gsl_vector *B, 
+                 gsl_bspline_workspace *w);
+
+int
+gsl_bspline_eval_nonzero(const double x,
+                         gsl_vector *Bk,
+                         size_t *istart,
+                         size_t *iend,
+                         gsl_bspline_workspace *w);
+
+gsl_bspline_deriv_workspace *
+gsl_bspline_deriv_alloc(const size_t k);
+
+void
+gsl_bspline_deriv_free(gsl_bspline_deriv_workspace *w);
+
+int
+gsl_bspline_deriv_eval(const double x,
+                       const size_t nderiv,
+                       gsl_matrix *dB,
+                       gsl_bspline_workspace *w,
+                       gsl_bspline_deriv_workspace *dw);
+
+int
+gsl_bspline_deriv_eval_nonzero(const double x,
+                               const size_t nderiv,
+                               gsl_matrix *dB,
+                               size_t *istart,
+                               size_t *iend,
+                               gsl_bspline_workspace *w,
+                               gsl_bspline_deriv_workspace *dw);
+
+__END_DECLS
+
+#endif /* __GSL_BSPLINE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_cblas.h b/util/X86LINUX64/include/gsl/gsl_cblas.h
new file mode 100644 (file)
index 0000000..e90e3b0
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_cblas.h
@@ -0,0 +1,606 @@
+/* blas/gsl_cblas.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* This is a copy of the CBLAS standard header.
+ * We carry this around so we do not have to
+ * break our model for flexible BLAS functionality.
+ */
+
+#ifndef __GSL_CBLAS_H__
+#define __GSL_CBLAS_H__
+#include <stddef.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+#define __BEGIN_DECLS extern "C" {
+#define __END_DECLS }
+#else
+#define __BEGIN_DECLS           /* empty */
+#define __END_DECLS             /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/*
+ * Enumerated and derived types
+ */
+#define CBLAS_INDEX size_t  /* this may vary between platforms */
+
+enum CBLAS_ORDER {CblasRowMajor=101, CblasColMajor=102};
+enum CBLAS_TRANSPOSE {CblasNoTrans=111, CblasTrans=112, CblasConjTrans=113};
+enum CBLAS_UPLO {CblasUpper=121, CblasLower=122};
+enum CBLAS_DIAG {CblasNonUnit=131, CblasUnit=132};
+enum CBLAS_SIDE {CblasLeft=141, CblasRight=142};
+
+/*
+ * ===========================================================================
+ * Prototypes for level 1 BLAS functions (complex are recast as routines)
+ * ===========================================================================
+ */
+float  cblas_sdsdot(const int N, const float alpha, const float *X,
+                    const int incX, const float *Y, const int incY);
+double cblas_dsdot(const int N, const float *X, const int incX, const float *Y,
+                   const int incY);
+float  cblas_sdot(const int N, const float  *X, const int incX,
+                  const float  *Y, const int incY);
+double cblas_ddot(const int N, const double *X, const int incX,
+                  const double *Y, const int incY);
+
+/*
+ * Functions having prefixes Z and C only
+ */
+void   cblas_cdotu_sub(const int N, const void *X, const int incX,
+                       const void *Y, const int incY, void *dotu);
+void   cblas_cdotc_sub(const int N, const void *X, const int incX,
+                       const void *Y, const int incY, void *dotc);
+
+void   cblas_zdotu_sub(const int N, const void *X, const int incX,
+                       const void *Y, const int incY, void *dotu);
+void   cblas_zdotc_sub(const int N, const void *X, const int incX,
+                       const void *Y, const int incY, void *dotc);
+
+
+/*
+ * Functions having prefixes S D SC DZ
+ */
+float  cblas_snrm2(const int N, const float *X, const int incX);
+float  cblas_sasum(const int N, const float *X, const int incX);
+
+double cblas_dnrm2(const int N, const double *X, const int incX);
+double cblas_dasum(const int N, const double *X, const int incX);
+
+float  cblas_scnrm2(const int N, const void *X, const int incX);
+float  cblas_scasum(const int N, const void *X, const int incX);
+
+double cblas_dznrm2(const int N, const void *X, const int incX);
+double cblas_dzasum(const int N, const void *X, const int incX);
+
+
+/*
+ * Functions having standard 4 prefixes (S D C Z)
+ */
+CBLAS_INDEX cblas_isamax(const int N, const float  *X, const int incX);
+CBLAS_INDEX cblas_idamax(const int N, const double *X, const int incX);
+CBLAS_INDEX cblas_icamax(const int N, const void   *X, const int incX);
+CBLAS_INDEX cblas_izamax(const int N, const void   *X, const int incX);
+
+/*
+ * ===========================================================================
+ * Prototypes for level 1 BLAS routines
+ * ===========================================================================
+ */
+
+/* 
+ * Routines with standard 4 prefixes (s, d, c, z)
+ */
+void cblas_sswap(const int N, float *X, const int incX, 
+                 float *Y, const int incY);
+void cblas_scopy(const int N, const float *X, const int incX, 
+                 float *Y, const int incY);
+void cblas_saxpy(const int N, const float alpha, const float *X,
+                 const int incX, float *Y, const int incY);
+
+void cblas_dswap(const int N, double *X, const int incX, 
+                 double *Y, const int incY);
+void cblas_dcopy(const int N, const double *X, const int incX, 
+                 double *Y, const int incY);
+void cblas_daxpy(const int N, const double alpha, const double *X,
+                 const int incX, double *Y, const int incY);
+
+void cblas_cswap(const int N, void *X, const int incX, 
+                 void *Y, const int incY);
+void cblas_ccopy(const int N, const void *X, const int incX, 
+                 void *Y, const int incY);
+void cblas_caxpy(const int N, const void *alpha, const void *X,
+                 const int incX, void *Y, const int incY);
+
+void cblas_zswap(const int N, void *X, const int incX, 
+                 void *Y, const int incY);
+void cblas_zcopy(const int N, const void *X, const int incX, 
+                 void *Y, const int incY);
+void cblas_zaxpy(const int N, const void *alpha, const void *X,
+                 const int incX, void *Y, const int incY);
+
+
+/* 
+ * Routines with S and D prefix only
+ */
+void cblas_srotg(float *a, float *b, float *c, float *s);
+void cblas_srotmg(float *d1, float *d2, float *b1, const float b2, float *P);
+void cblas_srot(const int N, float *X, const int incX,
+                float *Y, const int incY, const float c, const float s);
+void cblas_srotm(const int N, float *X, const int incX,
+                float *Y, const int incY, const float *P);
+
+void cblas_drotg(double *a, double *b, double *c, double *s);
+void cblas_drotmg(double *d1, double *d2, double *b1, const double b2, double *P);
+void cblas_drot(const int N, double *X, const int incX,
+                double *Y, const int incY, const double c, const double  s);
+void cblas_drotm(const int N, double *X, const int incX,
+                double *Y, const int incY, const double *P);
+
+
+/* 
+ * Routines with S D C Z CS and ZD prefixes
+ */
+void cblas_sscal(const int N, const float alpha, float *X, const int incX);
+void cblas_dscal(const int N, const double alpha, double *X, const int incX);
+void cblas_cscal(const int N, const void *alpha, void *X, const int incX);
+void cblas_zscal(const int N, const void *alpha, void *X, const int incX);
+void cblas_csscal(const int N, const float alpha, void *X, const int incX);
+void cblas_zdscal(const int N, const double alpha, void *X, const int incX);
+
+/*
+ * ===========================================================================
+ * Prototypes for level 2 BLAS
+ * ===========================================================================
+ */
+
+/* 
+ * Routines with standard 4 prefixes (S, D, C, Z)
+ */
+void cblas_sgemv(const enum CBLAS_ORDER order,
+                 const enum CBLAS_TRANSPOSE TransA, const int M, const int N,
+                 const float alpha, const float *A, const int lda,
+                 const float *X, const int incX, const float beta,
+                 float *Y, const int incY);
+void cblas_sgbmv(const enum CBLAS_ORDER order,
+                 const enum CBLAS_TRANSPOSE TransA, const int M, const int N,
+                 const int KL, const int KU, const float alpha,
+                 const float *A, const int lda, const float *X,
+                 const int incX, const float beta, float *Y, const int incY);
+void cblas_strmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const float *A, const int lda, 
+                 float *X, const int incX);
+void cblas_stbmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const int K, const float *A, const int lda, 
+                 float *X, const int incX);
+void cblas_stpmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const float *Ap, float *X, const int incX);
+void cblas_strsv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const float *A, const int lda, float *X,
+                 const int incX);
+void cblas_stbsv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const int K, const float *A, const int lda,
+                 float *X, const int incX);
+void cblas_stpsv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const float *Ap, float *X, const int incX);
+
+void cblas_dgemv(const enum CBLAS_ORDER order,
+                 const enum CBLAS_TRANSPOSE TransA, const int M, const int N,
+                 const double alpha, const double *A, const int lda,
+                 const double *X, const int incX, const double beta,
+                 double *Y, const int incY);
+void cblas_dgbmv(const enum CBLAS_ORDER order,
+                 const enum CBLAS_TRANSPOSE TransA, const int M, const int N,
+                 const int KL, const int KU, const double alpha,
+                 const double *A, const int lda, const double *X,
+                 const int incX, const double beta, double *Y, const int incY);
+void cblas_dtrmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const double *A, const int lda, 
+                 double *X, const int incX);
+void cblas_dtbmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const int K, const double *A, const int lda, 
+                 double *X, const int incX);
+void cblas_dtpmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const double *Ap, double *X, const int incX);
+void cblas_dtrsv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const double *A, const int lda, double *X,
+                 const int incX);
+void cblas_dtbsv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const int K, const double *A, const int lda,
+                 double *X, const int incX);
+void cblas_dtpsv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const double *Ap, double *X, const int incX);
+
+void cblas_cgemv(const enum CBLAS_ORDER order,
+                 const enum CBLAS_TRANSPOSE TransA, const int M, const int N,
+                 const void *alpha, const void *A, const int lda,
+                 const void *X, const int incX, const void *beta,
+                 void *Y, const int incY);
+void cblas_cgbmv(const enum CBLAS_ORDER order,
+                 const enum CBLAS_TRANSPOSE TransA, const int M, const int N,
+                 const int KL, const int KU, const void *alpha,
+                 const void *A, const int lda, const void *X,
+                 const int incX, const void *beta, void *Y, const int incY);
+void cblas_ctrmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const void *A, const int lda, 
+                 void *X, const int incX);
+void cblas_ctbmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const int K, const void *A, const int lda, 
+                 void *X, const int incX);
+void cblas_ctpmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const void *Ap, void *X, const int incX);
+void cblas_ctrsv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const void *A, const int lda, void *X,
+                 const int incX);
+void cblas_ctbsv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const int K, const void *A, const int lda,
+                 void *X, const int incX);
+void cblas_ctpsv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const void *Ap, void *X, const int incX);
+
+void cblas_zgemv(const enum CBLAS_ORDER order,
+                 const enum CBLAS_TRANSPOSE TransA, const int M, const int N,
+                 const void *alpha, const void *A, const int lda,
+                 const void *X, const int incX, const void *beta,
+                 void *Y, const int incY);
+void cblas_zgbmv(const enum CBLAS_ORDER order,
+                 const enum CBLAS_TRANSPOSE TransA, const int M, const int N,
+                 const int KL, const int KU, const void *alpha,
+                 const void *A, const int lda, const void *X,
+                 const int incX, const void *beta, void *Y, const int incY);
+void cblas_ztrmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const void *A, const int lda, 
+                 void *X, const int incX);
+void cblas_ztbmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const int K, const void *A, const int lda, 
+                 void *X, const int incX);
+void cblas_ztpmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const void *Ap, void *X, const int incX);
+void cblas_ztrsv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const void *A, const int lda, void *X,
+                 const int incX);
+void cblas_ztbsv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const int K, const void *A, const int lda,
+                 void *X, const int incX);
+void cblas_ztpsv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_DIAG Diag,
+                 const int N, const void *Ap, void *X, const int incX);
+
+
+/* 
+ * Routines with S and D prefixes only
+ */
+void cblas_ssymv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const int N, const float alpha, const float *A,
+                 const int lda, const float *X, const int incX,
+                 const float beta, float *Y, const int incY);
+void cblas_ssbmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const int N, const int K, const float alpha, const float *A,
+                 const int lda, const float *X, const int incX,
+                 const float beta, float *Y, const int incY);
+void cblas_sspmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const int N, const float alpha, const float *Ap,
+                 const float *X, const int incX,
+                 const float beta, float *Y, const int incY);
+void cblas_sger(const enum CBLAS_ORDER order, const int M, const int N,
+                const float alpha, const float *X, const int incX,
+                const float *Y, const int incY, float *A, const int lda);
+void cblas_ssyr(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                const int N, const float alpha, const float *X,
+                const int incX, float *A, const int lda);
+void cblas_sspr(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                const int N, const float alpha, const float *X,
+                const int incX, float *Ap);
+void cblas_ssyr2(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                const int N, const float alpha, const float *X,
+                const int incX, const float *Y, const int incY, float *A,
+                const int lda);
+void cblas_sspr2(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                const int N, const float alpha, const float *X,
+                const int incX, const float *Y, const int incY, float *A);
+
+void cblas_dsymv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const int N, const double alpha, const double *A,
+                 const int lda, const double *X, const int incX,
+                 const double beta, double *Y, const int incY);
+void cblas_dsbmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const int N, const int K, const double alpha, const double *A,
+                 const int lda, const double *X, const int incX,
+                 const double beta, double *Y, const int incY);
+void cblas_dspmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const int N, const double alpha, const double *Ap,
+                 const double *X, const int incX,
+                 const double beta, double *Y, const int incY);
+void cblas_dger(const enum CBLAS_ORDER order, const int M, const int N,
+                const double alpha, const double *X, const int incX,
+                const double *Y, const int incY, double *A, const int lda);
+void cblas_dsyr(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                const int N, const double alpha, const double *X,
+                const int incX, double *A, const int lda);
+void cblas_dspr(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                const int N, const double alpha, const double *X,
+                const int incX, double *Ap);
+void cblas_dsyr2(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                const int N, const double alpha, const double *X,
+                const int incX, const double *Y, const int incY, double *A,
+                const int lda);
+void cblas_dspr2(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                const int N, const double alpha, const double *X,
+                const int incX, const double *Y, const int incY, double *A);
+
+
+/* 
+ * Routines with C and Z prefixes only
+ */
+void cblas_chemv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const int N, const void *alpha, const void *A,
+                 const int lda, const void *X, const int incX,
+                 const void *beta, void *Y, const int incY);
+void cblas_chbmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const int N, const int K, const void *alpha, const void *A,
+                 const int lda, const void *X, const int incX,
+                 const void *beta, void *Y, const int incY);
+void cblas_chpmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const int N, const void *alpha, const void *Ap,
+                 const void *X, const int incX,
+                 const void *beta, void *Y, const int incY);
+void cblas_cgeru(const enum CBLAS_ORDER order, const int M, const int N,
+                 const void *alpha, const void *X, const int incX,
+                 const void *Y, const int incY, void *A, const int lda);
+void cblas_cgerc(const enum CBLAS_ORDER order, const int M, const int N,
+                 const void *alpha, const void *X, const int incX,
+                 const void *Y, const int incY, void *A, const int lda);
+void cblas_cher(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                const int N, const float alpha, const void *X, const int incX,
+                void *A, const int lda);
+void cblas_chpr(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                const int N, const float alpha, const void *X,
+                const int incX, void *A);
+void cblas_cher2(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo, const int N,
+                const void *alpha, const void *X, const int incX,
+                const void *Y, const int incY, void *A, const int lda);
+void cblas_chpr2(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo, const int N,
+                const void *alpha, const void *X, const int incX,
+                const void *Y, const int incY, void *Ap);
+
+void cblas_zhemv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const int N, const void *alpha, const void *A,
+                 const int lda, const void *X, const int incX,
+                 const void *beta, void *Y, const int incY);
+void cblas_zhbmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const int N, const int K, const void *alpha, const void *A,
+                 const int lda, const void *X, const int incX,
+                 const void *beta, void *Y, const int incY);
+void cblas_zhpmv(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                 const int N, const void *alpha, const void *Ap,
+                 const void *X, const int incX,
+                 const void *beta, void *Y, const int incY);
+void cblas_zgeru(const enum CBLAS_ORDER order, const int M, const int N,
+                 const void *alpha, const void *X, const int incX,
+                 const void *Y, const int incY, void *A, const int lda);
+void cblas_zgerc(const enum CBLAS_ORDER order, const int M, const int N,
+                 const void *alpha, const void *X, const int incX,
+                 const void *Y, const int incY, void *A, const int lda);
+void cblas_zher(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                const int N, const double alpha, const void *X, const int incX,
+                void *A, const int lda);
+void cblas_zhpr(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo,
+                const int N, const double alpha, const void *X,
+                const int incX, void *A);
+void cblas_zher2(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo, const int N,
+                const void *alpha, const void *X, const int incX,
+                const void *Y, const int incY, void *A, const int lda);
+void cblas_zhpr2(const enum CBLAS_ORDER order, const enum CBLAS_UPLO Uplo, const int N,
+                const void *alpha, const void *X, const int incX,
+                const void *Y, const int incY, void *Ap);
+
+/*
+ * ===========================================================================
+ * Prototypes for level 3 BLAS
+ * ===========================================================================
+ */
+
+/* 
+ * Routines with standard 4 prefixes (S, D, C, Z)
+ */
+void cblas_sgemm(const enum CBLAS_ORDER Order, const enum CBLAS_TRANSPOSE TransA,
+                 const enum CBLAS_TRANSPOSE TransB, const int M, const int N,
+                 const int K, const float alpha, const float *A,
+                 const int lda, const float *B, const int ldb,
+                 const float beta, float *C, const int ldc);
+void cblas_ssymm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,
+                 const enum CBLAS_UPLO Uplo, const int M, const int N,
+                 const float alpha, const float *A, const int lda,
+                 const float *B, const int ldb, const float beta,
+                 float *C, const int ldc);
+void cblas_ssyrk(const enum CBLAS_ORDER Order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE Trans, const int N, const int K,
+                 const float alpha, const float *A, const int lda,
+                 const float beta, float *C, const int ldc);
+void cblas_ssyr2k(const enum CBLAS_ORDER Order, const enum CBLAS_UPLO Uplo,
+                  const enum CBLAS_TRANSPOSE Trans, const int N, const int K,
+                  const float alpha, const float *A, const int lda,
+                  const float *B, const int ldb, const float beta,
+                  float *C, const int ldc);
+void cblas_strmm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,
+                 const enum CBLAS_UPLO Uplo, const enum CBLAS_TRANSPOSE TransA,
+                 const enum CBLAS_DIAG Diag, const int M, const int N,
+                 const float alpha, const float *A, const int lda,
+                 float *B, const int ldb);
+void cblas_strsm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,
+                 const enum CBLAS_UPLO Uplo, const enum CBLAS_TRANSPOSE TransA,
+                 const enum CBLAS_DIAG Diag, const int M, const int N,
+                 const float alpha, const float *A, const int lda,
+                 float *B, const int ldb);
+
+void cblas_dgemm(const enum CBLAS_ORDER Order, const enum CBLAS_TRANSPOSE TransA,
+                 const enum CBLAS_TRANSPOSE TransB, const int M, const int N,
+                 const int K, const double alpha, const double *A,
+                 const int lda, const double *B, const int ldb,
+                 const double beta, double *C, const int ldc);
+void cblas_dsymm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,
+                 const enum CBLAS_UPLO Uplo, const int M, const int N,
+                 const double alpha, const double *A, const int lda,
+                 const double *B, const int ldb, const double beta,
+                 double *C, const int ldc);
+void cblas_dsyrk(const enum CBLAS_ORDER Order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE Trans, const int N, const int K,
+                 const double alpha, const double *A, const int lda,
+                 const double beta, double *C, const int ldc);
+void cblas_dsyr2k(const enum CBLAS_ORDER Order, const enum CBLAS_UPLO Uplo,
+                  const enum CBLAS_TRANSPOSE Trans, const int N, const int K,
+                  const double alpha, const double *A, const int lda,
+                  const double *B, const int ldb, const double beta,
+                  double *C, const int ldc);
+void cblas_dtrmm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,
+                 const enum CBLAS_UPLO Uplo, const enum CBLAS_TRANSPOSE TransA,
+                 const enum CBLAS_DIAG Diag, const int M, const int N,
+                 const double alpha, const double *A, const int lda,
+                 double *B, const int ldb);
+void cblas_dtrsm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,
+                 const enum CBLAS_UPLO Uplo, const enum CBLAS_TRANSPOSE TransA,
+                 const enum CBLAS_DIAG Diag, const int M, const int N,
+                 const double alpha, const double *A, const int lda,
+                 double *B, const int ldb);
+
+void cblas_cgemm(const enum CBLAS_ORDER Order, const enum CBLAS_TRANSPOSE TransA,
+                 const enum CBLAS_TRANSPOSE TransB, const int M, const int N,
+                 const int K, const void *alpha, const void *A,
+                 const int lda, const void *B, const int ldb,
+                 const void *beta, void *C, const int ldc);
+void cblas_csymm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,
+                 const enum CBLAS_UPLO Uplo, const int M, const int N,
+                 const void *alpha, const void *A, const int lda,
+                 const void *B, const int ldb, const void *beta,
+                 void *C, const int ldc);
+void cblas_csyrk(const enum CBLAS_ORDER Order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE Trans, const int N, const int K,
+                 const void *alpha, const void *A, const int lda,
+                 const void *beta, void *C, const int ldc);
+void cblas_csyr2k(const enum CBLAS_ORDER Order, const enum CBLAS_UPLO Uplo,
+                  const enum CBLAS_TRANSPOSE Trans, const int N, const int K,
+                  const void *alpha, const void *A, const int lda,
+                  const void *B, const int ldb, const void *beta,
+                  void *C, const int ldc);
+void cblas_ctrmm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,
+                 const enum CBLAS_UPLO Uplo, const enum CBLAS_TRANSPOSE TransA,
+                 const enum CBLAS_DIAG Diag, const int M, const int N,
+                 const void *alpha, const void *A, const int lda,
+                 void *B, const int ldb);
+void cblas_ctrsm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,
+                 const enum CBLAS_UPLO Uplo, const enum CBLAS_TRANSPOSE TransA,
+                 const enum CBLAS_DIAG Diag, const int M, const int N,
+                 const void *alpha, const void *A, const int lda,
+                 void *B, const int ldb);
+
+void cblas_zgemm(const enum CBLAS_ORDER Order, const enum CBLAS_TRANSPOSE TransA,
+                 const enum CBLAS_TRANSPOSE TransB, const int M, const int N,
+                 const int K, const void *alpha, const void *A,
+                 const int lda, const void *B, const int ldb,
+                 const void *beta, void *C, const int ldc);
+void cblas_zsymm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,
+                 const enum CBLAS_UPLO Uplo, const int M, const int N,
+                 const void *alpha, const void *A, const int lda,
+                 const void *B, const int ldb, const void *beta,
+                 void *C, const int ldc);
+void cblas_zsyrk(const enum CBLAS_ORDER Order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE Trans, const int N, const int K,
+                 const void *alpha, const void *A, const int lda,
+                 const void *beta, void *C, const int ldc);
+void cblas_zsyr2k(const enum CBLAS_ORDER Order, const enum CBLAS_UPLO Uplo,
+                  const enum CBLAS_TRANSPOSE Trans, const int N, const int K,
+                  const void *alpha, const void *A, const int lda,
+                  const void *B, const int ldb, const void *beta,
+                  void *C, const int ldc);
+void cblas_ztrmm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,
+                 const enum CBLAS_UPLO Uplo, const enum CBLAS_TRANSPOSE TransA,
+                 const enum CBLAS_DIAG Diag, const int M, const int N,
+                 const void *alpha, const void *A, const int lda,
+                 void *B, const int ldb);
+void cblas_ztrsm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,
+                 const enum CBLAS_UPLO Uplo, const enum CBLAS_TRANSPOSE TransA,
+                 const enum CBLAS_DIAG Diag, const int M, const int N,
+                 const void *alpha, const void *A, const int lda,
+                 void *B, const int ldb);
+
+
+/* 
+ * Routines with prefixes C and Z only
+ */
+void cblas_chemm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,
+                 const enum CBLAS_UPLO Uplo, const int M, const int N,
+                 const void *alpha, const void *A, const int lda,
+                 const void *B, const int ldb, const void *beta,
+                 void *C, const int ldc);
+void cblas_cherk(const enum CBLAS_ORDER Order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE Trans, const int N, const int K,
+                 const float alpha, const void *A, const int lda,
+                 const float beta, void *C, const int ldc);
+void cblas_cher2k(const enum CBLAS_ORDER Order, const enum CBLAS_UPLO Uplo,
+                  const enum CBLAS_TRANSPOSE Trans, const int N, const int K,
+                  const void *alpha, const void *A, const int lda,
+                  const void *B, const int ldb, const float beta,
+                  void *C, const int ldc);
+
+void cblas_zhemm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,
+                 const enum CBLAS_UPLO Uplo, const int M, const int N,
+                 const void *alpha, const void *A, const int lda,
+                 const void *B, const int ldb, const void *beta,
+                 void *C, const int ldc);
+void cblas_zherk(const enum CBLAS_ORDER Order, const enum CBLAS_UPLO Uplo,
+                 const enum CBLAS_TRANSPOSE Trans, const int N, const int K,
+                 const double alpha, const void *A, const int lda,
+                 const double beta, void *C, const int ldc);
+void cblas_zher2k(const enum CBLAS_ORDER Order, const enum CBLAS_UPLO Uplo,
+                  const enum CBLAS_TRANSPOSE Trans, const int N, const int K,
+                  const void *alpha, const void *A, const int lda,
+                  const void *B, const int ldb, const double beta,
+                  void *C, const int ldc);
+
+void cblas_xerbla(int p, const char *rout, const char *form, ...);
+
+__END_DECLS
+
+#endif /* __GSL_CBLAS_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_cdf.h b/util/X86LINUX64/include/gsl/gsl_cdf.h
new file mode 100644 (file)
index 0000000..1a4e39b
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_cdf.h
@@ -0,0 +1,170 @@
+/* cdf/gsl_cdf.h
+ * 
+ * Copyright (C) 2002 Jason H. Stover.
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307, USA.
+ */
+
+/* Author:  J. Stover */
+
+#ifndef __GSL_CDF_H__
+#define __GSL_CDF_H__
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS          /* empty */
+# define __END_DECLS            /* empty */
+#endif
+
+__BEGIN_DECLS 
+
+double gsl_cdf_ugaussian_P (const double x);
+double gsl_cdf_ugaussian_Q (const double x);
+
+double gsl_cdf_ugaussian_Pinv (const double P);
+double gsl_cdf_ugaussian_Qinv (const double Q);
+
+double gsl_cdf_gaussian_P (const double x, const double sigma);
+double gsl_cdf_gaussian_Q (const double x, const double sigma);
+
+double gsl_cdf_gaussian_Pinv (const double P, const double sigma);
+double gsl_cdf_gaussian_Qinv (const double Q, const double sigma);
+
+double gsl_cdf_gamma_P (const double x, const double a, const double b);
+double gsl_cdf_gamma_Q (const double x, const double a, const double b);
+
+double gsl_cdf_gamma_Pinv (const double P, const double a, const double b);
+double gsl_cdf_gamma_Qinv (const double Q, const double a, const double b);
+
+double gsl_cdf_cauchy_P (const double x, const double a);
+double gsl_cdf_cauchy_Q (const double x, const double a);
+
+double gsl_cdf_cauchy_Pinv (const double P, const double a);
+double gsl_cdf_cauchy_Qinv (const double Q, const double a);
+
+double gsl_cdf_laplace_P (const double x, const double a);
+double gsl_cdf_laplace_Q (const double x, const double a);
+
+double gsl_cdf_laplace_Pinv (const double P, const double a);
+double gsl_cdf_laplace_Qinv (const double Q, const double a);
+
+double gsl_cdf_rayleigh_P (const double x, const double sigma);
+double gsl_cdf_rayleigh_Q (const double x, const double sigma);
+
+double gsl_cdf_rayleigh_Pinv (const double P, const double sigma);
+double gsl_cdf_rayleigh_Qinv (const double Q, const double sigma);
+
+double gsl_cdf_chisq_P (const double x, const double nu);
+double gsl_cdf_chisq_Q (const double x, const double nu);
+
+double gsl_cdf_chisq_Pinv (const double P, const double nu);
+double gsl_cdf_chisq_Qinv (const double Q, const double nu);
+
+double gsl_cdf_exponential_P (const double x, const double mu);
+double gsl_cdf_exponential_Q (const double x, const double mu);
+
+double gsl_cdf_exponential_Pinv (const double P, const double mu);
+double gsl_cdf_exponential_Qinv (const double Q, const double mu);
+
+double gsl_cdf_exppow_P (const double x, const double a, const double b);
+double gsl_cdf_exppow_Q (const double x, const double a, const double b);
+
+double gsl_cdf_tdist_P (const double x, const double nu);
+double gsl_cdf_tdist_Q (const double x, const double nu);
+
+double gsl_cdf_tdist_Pinv (const double P, const double nu);
+double gsl_cdf_tdist_Qinv (const double Q, const double nu);
+
+double gsl_cdf_fdist_P (const double x, const double nu1, const double nu2);
+double gsl_cdf_fdist_Q (const double x, const double nu1, const double nu2);
+
+double gsl_cdf_fdist_Pinv (const double P, const double nu1, const double nu2);
+double gsl_cdf_fdist_Qinv (const double Q, const double nu1, const double nu2);
+
+double gsl_cdf_beta_P (const double x, const double a, const double b);
+double gsl_cdf_beta_Q (const double x, const double a, const double b);
+
+double gsl_cdf_beta_Pinv (const double P, const double a, const double b);
+double gsl_cdf_beta_Qinv (const double Q, const double a, const double b);
+
+double gsl_cdf_flat_P (const double x, const double a, const double b);
+double gsl_cdf_flat_Q (const double x, const double a, const double b);
+
+double gsl_cdf_flat_Pinv (const double P, const double a, const double b);
+double gsl_cdf_flat_Qinv (const double Q, const double a, const double b);
+
+double gsl_cdf_lognormal_P (const double x, const double zeta, const double sigma);
+double gsl_cdf_lognormal_Q (const double x, const double zeta, const double sigma);
+
+double gsl_cdf_lognormal_Pinv (const double P, const double zeta, const double sigma);
+double gsl_cdf_lognormal_Qinv (const double Q, const double zeta, const double sigma);
+
+double gsl_cdf_gumbel1_P (const double x, const double a, const double b);
+double gsl_cdf_gumbel1_Q (const double x, const double a, const double b);
+
+double gsl_cdf_gumbel1_Pinv (const double P, const double a, const double b);
+double gsl_cdf_gumbel1_Qinv (const double Q, const double a, const double b);
+
+double gsl_cdf_gumbel2_P (const double x, const double a, const double b);
+double gsl_cdf_gumbel2_Q (const double x, const double a, const double b);
+
+double gsl_cdf_gumbel2_Pinv (const double P, const double a, const double b);
+double gsl_cdf_gumbel2_Qinv (const double Q, const double a, const double b);
+
+double gsl_cdf_weibull_P (const double x, const double a, const double b);
+double gsl_cdf_weibull_Q (const double x, const double a, const double b);
+
+double gsl_cdf_weibull_Pinv (const double P, const double a, const double b);
+double gsl_cdf_weibull_Qinv (const double Q, const double a, const double b);
+
+double gsl_cdf_pareto_P (const double x, const double a, const double b);
+double gsl_cdf_pareto_Q (const double x, const double a, const double b);
+
+double gsl_cdf_pareto_Pinv (const double P, const double a, const double b);
+double gsl_cdf_pareto_Qinv (const double Q, const double a, const double b);
+
+double gsl_cdf_logistic_P (const double x, const double a);
+double gsl_cdf_logistic_Q (const double x, const double a);
+
+double gsl_cdf_logistic_Pinv (const double P, const double a);
+double gsl_cdf_logistic_Qinv (const double Q, const double a);
+
+double gsl_cdf_binomial_P (const unsigned int k, const double p, const unsigned int n);
+double gsl_cdf_binomial_Q (const unsigned int k, const double p, const unsigned int n);
+
+double gsl_cdf_poisson_P (const unsigned int k, const double mu);
+double gsl_cdf_poisson_Q (const unsigned int k, const double mu);
+
+double gsl_cdf_geometric_P (const unsigned int k, const double p);
+double gsl_cdf_geometric_Q (const unsigned int k, const double p);
+
+double gsl_cdf_negative_binomial_P (const unsigned int k, const double p, const double n);
+double gsl_cdf_negative_binomial_Q (const unsigned int k, const double p, const double n);
+
+double gsl_cdf_pascal_P (const unsigned int k, const double p, const unsigned int n);
+double gsl_cdf_pascal_Q (const unsigned int k, const double p, const unsigned int n);
+
+double gsl_cdf_hypergeometric_P (const unsigned int k, const unsigned int n1,
+                                 const unsigned int n2, const unsigned int t);
+double gsl_cdf_hypergeometric_Q (const unsigned int k, const unsigned int n1,
+                                 const unsigned int n2, const unsigned int t);
+
+__END_DECLS
+
+#endif /* __GSL_CDF_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_chebyshev.h b/util/X86LINUX64/include/gsl/gsl_chebyshev.h
new file mode 100644 (file)
index 0000000..858048e
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_chebyshev.h
@@ -0,0 +1,133 @@
+/* cheb/gsl_chebyshev.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_CHEBYSHEV_H__
+#define __GSL_CHEBYSHEV_H__
+
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_mode.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* data for a Chebyshev series over a given interval */
+
+struct gsl_cheb_series_struct {
+
+  double * c;   /* coefficients                */
+  size_t order; /* order of expansion          */
+  double a;     /* lower interval point        */
+  double b;     /* upper interval point        */
+
+  /* The following exists (mostly) for the benefit
+   * of the implementation. It is an effective single
+   * precision order, for use in single precision
+   * evaluation. Users can use it if they like, but
+   * only they know how to calculate it, since it is
+   * specific to the approximated function. By default,
+   * order_sp = order.
+   * It is used explicitly only by the gsl_cheb_eval_mode
+   * functions, which are not meant for casual use.
+   */
+  size_t order_sp;
+
+  /* Additional elements not used by specfunc */
+
+  double * f;   /* function evaluated at chebyschev points  */
+};
+typedef struct gsl_cheb_series_struct gsl_cheb_series;
+
+
+/* Calculate a Chebyshev series of specified order over
+ * a specified interval, for a given function.
+ * Return 0 on failure.
+ */
+gsl_cheb_series * gsl_cheb_alloc(const size_t order);
+
+/* Free a Chebyshev series previously calculated with gsl_cheb_alloc().
+ */
+void gsl_cheb_free(gsl_cheb_series * cs);
+
+/* Calculate a Chebyshev series using the storage provided.
+ * Uses the interval (a,b) and the order with which it
+ * was initially created.
+ *
+ */
+int gsl_cheb_init(gsl_cheb_series * cs, const gsl_function * func,
+                  const double a, const double b);
+
+/* Return the order, size of coefficient array and coefficient array ptr */
+size_t gsl_cheb_order (const gsl_cheb_series * cs);
+size_t gsl_cheb_size (const gsl_cheb_series * cs);
+double *gsl_cheb_coeffs (const gsl_cheb_series * cs);
+
+/* Evaluate a Chebyshev series at a given point.
+ * No errors can occur for a struct obtained from gsl_cheb_new().
+ */
+double gsl_cheb_eval(const gsl_cheb_series * cs, const double x);
+int gsl_cheb_eval_err(const gsl_cheb_series * cs, const double x, 
+                      double * result, double * abserr);
+
+
+/* Evaluate a Chebyshev series at a given point, to (at most) the given order.
+ * No errors can occur for a struct obtained from gsl_cheb_new().
+ */
+double gsl_cheb_eval_n(const gsl_cheb_series * cs, const size_t order, 
+                       const double x);
+int gsl_cheb_eval_n_err(const gsl_cheb_series * cs, const size_t order, 
+                        const double x, double * result, double * abserr);
+
+
+/* Evaluate a Chebyshev series at a given point, using the default
+ * order for double precision mode(s) and the single precision
+ * order for other modes.
+ * No errors can occur for a struct obtained from gsl_cheb_new().
+ */
+double gsl_cheb_eval_mode(const gsl_cheb_series * cs, const double x, gsl_mode_t mode);
+int gsl_cheb_eval_mode_e(const gsl_cheb_series * cs, const double x, gsl_mode_t mode, double * result, double * abserr);
+
+
+
+/* Compute the derivative of a Chebyshev series.
+ */
+int gsl_cheb_calc_deriv(gsl_cheb_series * deriv, const gsl_cheb_series * cs);
+
+/* Compute the integral of a Chebyshev series. The
+ * integral is fixed by the condition that it equals zero at
+ * the left end-point, ie it is precisely
+ *       Integrate[cs(t; a,b), {t, a, x}]
+ */
+int gsl_cheb_calc_integ(gsl_cheb_series * integ, const gsl_cheb_series * cs);
+
+
+
+
+__END_DECLS
+
+#endif /* __GSL_CHEBYSHEV_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_check_range.h b/util/X86LINUX64/include/gsl/gsl_check_range.h
new file mode 100644 (file)
index 0000000..d110b6b
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_check_range.h
@@ -0,0 +1,57 @@
+/* vector/gsl_check_range.h
+ * 
+ * Copyright (C) 2003, 2004, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_CHECK_RANGE_H__
+#define __GSL_CHECK_RANGE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+GSL_VAR int gsl_check_range;
+
+/* Turn range checking on by default, unless the user defines
+   GSL_RANGE_CHECK_OFF, or defines GSL_RANGE_CHECK to 0 explicitly */
+
+#ifdef GSL_RANGE_CHECK_OFF
+# ifndef GSL_RANGE_CHECK
+#  define GSL_RANGE_CHECK 0
+# else
+#  error "cannot set both GSL_RANGE_CHECK and GSL_RANGE_CHECK_OFF"
+# endif
+#else
+# ifndef GSL_RANGE_CHECK
+#  define GSL_RANGE_CHECK 1
+# endif
+#endif
+
+__END_DECLS
+
+#endif /* __GSL_CHECK_RANGE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_combination.h b/util/X86LINUX64/include/gsl/gsl_combination.h
new file mode 100644 (file)
index 0000000..69de7cf
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_combination.h
@@ -0,0 +1,92 @@
+/* combination/gsl_combination.h
+ * based on permutation/gsl_permutation.h by Brian Gough
+ * 
+ * Copyright (C) 2001 Szymon Jaroszewicz
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_COMBINATION_H__
+#define __GSL_COMBINATION_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_combination_struct
+{
+  size_t n;
+  size_t k;
+  size_t *data;
+};
+
+typedef struct gsl_combination_struct gsl_combination;
+
+gsl_combination *gsl_combination_alloc (const size_t n, const size_t k);
+gsl_combination *gsl_combination_calloc (const size_t n, const size_t k);
+void gsl_combination_init_first (gsl_combination * c);
+void gsl_combination_init_last (gsl_combination * c);
+void gsl_combination_free (gsl_combination * c);
+int gsl_combination_memcpy (gsl_combination * dest, const gsl_combination * src); 
+
+int gsl_combination_fread (FILE * stream, gsl_combination * c);
+int gsl_combination_fwrite (FILE * stream, const gsl_combination * c);
+int gsl_combination_fscanf (FILE * stream, gsl_combination * c);
+int gsl_combination_fprintf (FILE * stream, const gsl_combination * c, const char *format);
+
+size_t gsl_combination_n (const gsl_combination * c);
+size_t gsl_combination_k (const gsl_combination * c);
+size_t * gsl_combination_data (const gsl_combination * c);
+
+int gsl_combination_valid (gsl_combination * c);
+int gsl_combination_next (gsl_combination * c);
+int gsl_combination_prev (gsl_combination * c);
+
+INLINE_DECL size_t gsl_combination_get (const gsl_combination * c, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+size_t
+gsl_combination_get (const gsl_combination * c, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= c->k)) /* size_t is unsigned, can't be negative */
+    {
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, 0);
+    }
+#endif
+  return c->data[i];
+}
+
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_COMBINATION_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_complex.h b/util/X86LINUX64/include/gsl/gsl_complex.h
new file mode 100644 (file)
index 0000000..e77b770
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_complex.h
@@ -0,0 +1,103 @@
+/* complex/gsl_complex.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_COMPLEX_H__
+#define __GSL_COMPLEX_H__
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* two consecutive built-in types as a complex number */
+typedef double *       gsl_complex_packed ;
+typedef float *        gsl_complex_packed_float  ;
+typedef long double *  gsl_complex_packed_long_double ;
+
+typedef const double *       gsl_const_complex_packed ;
+typedef const float *        gsl_const_complex_packed_float  ;
+typedef const long double *  gsl_const_complex_packed_long_double ;
+
+
+/* 2N consecutive built-in types as N complex numbers */
+typedef double *       gsl_complex_packed_array ;
+typedef float *        gsl_complex_packed_array_float  ;
+typedef long double *  gsl_complex_packed_array_long_double ;
+
+typedef const double *       gsl_const_complex_packed_array ;
+typedef const float *        gsl_const_complex_packed_array_float  ;
+typedef const long double *  gsl_const_complex_packed_array_long_double ;
+
+
+/* Yes... this seems weird. Trust us. The point is just that
+   sometimes you want to make it obvious that something is
+   an output value. The fact that it lacks a 'const' may not
+   be enough of a clue for people in some contexts.
+ */
+typedef double *       gsl_complex_packed_ptr ;
+typedef float *        gsl_complex_packed_float_ptr  ;
+typedef long double *  gsl_complex_packed_long_double_ptr ;
+
+typedef const double *       gsl_const_complex_packed_ptr ;
+typedef const float *        gsl_const_complex_packed_float_ptr  ;
+typedef const long double *  gsl_const_complex_packed_long_double_ptr ;
+
+
+typedef struct
+  {
+    long double dat[2];
+  }
+gsl_complex_long_double;
+
+typedef struct
+  {
+    double dat[2];
+  }
+gsl_complex;
+
+typedef struct
+  {
+    float dat[2];
+  }
+gsl_complex_float;
+
+#define GSL_REAL(z)     ((z).dat[0])
+#define GSL_IMAG(z)     ((z).dat[1])
+#define GSL_COMPLEX_P(zp) ((zp)->dat)
+#define GSL_COMPLEX_P_REAL(zp)  ((zp)->dat[0])
+#define GSL_COMPLEX_P_IMAG(zp)  ((zp)->dat[1])
+#define GSL_COMPLEX_EQ(z1,z2) (((z1).dat[0] == (z2).dat[0]) && ((z1).dat[1] == (z2).dat[1]))
+
+#define GSL_SET_COMPLEX(zp,x,y) do {(zp)->dat[0]=(x); (zp)->dat[1]=(y);} while(0)
+#define GSL_SET_REAL(zp,x) do {(zp)->dat[0]=(x);} while(0)
+#define GSL_SET_IMAG(zp,y) do {(zp)->dat[1]=(y);} while(0)
+
+#define GSL_SET_COMPLEX_PACKED(zp,n,x,y) do {*((zp)+2*(n))=(x); *((zp)+(2*(n)+1))=(y);} while(0)
+
+__END_DECLS
+
+#endif /* __GSL_COMPLEX_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_complex_math.h b/util/X86LINUX64/include/gsl/gsl_complex_math.h
new file mode 100644 (file)
index 0000000..ad8d076
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_complex_math.h
@@ -0,0 +1,142 @@
+/* complex/gsl_complex_math.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2004, 2007 Jorma Olavi Tähtinen, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_COMPLEX_MATH_H__
+#define __GSL_COMPLEX_MATH_H__
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_complex.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+#define __BEGIN_DECLS extern "C" {
+#define __END_DECLS }
+#else
+#define __BEGIN_DECLS           /* empty */
+#define __END_DECLS             /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/* Complex numbers */
+
+gsl_complex gsl_complex_polar (double r, double theta); /* r= r e^(i theta) */
+
+INLINE_DECL gsl_complex gsl_complex_rect (double x, double y);  /* r= real+i*imag */
+
+#ifdef HAVE_INLINE
+INLINE_FUN gsl_complex
+gsl_complex_rect (double x, double y)
+{                               /* return z = x + i y */
+  gsl_complex z;
+  GSL_SET_COMPLEX (&z, x, y);
+  return z;
+}
+#endif
+
+#define GSL_COMPLEX_ONE (gsl_complex_rect(1.0,0.0))
+#define GSL_COMPLEX_ZERO (gsl_complex_rect(0.0,0.0))
+#define GSL_COMPLEX_NEGONE (gsl_complex_rect(-1.0,0.0))
+
+/* Properties of complex numbers */
+
+double gsl_complex_arg (gsl_complex z); /* return arg(z), -pi< arg(z) <=+pi */
+double gsl_complex_abs (gsl_complex z);   /* return |z|   */
+double gsl_complex_abs2 (gsl_complex z);  /* return |z|^2 */
+double gsl_complex_logabs (gsl_complex z); /* return log|z| */
+
+/* Complex arithmetic operators */
+
+gsl_complex gsl_complex_add (gsl_complex a, gsl_complex b);  /* r=a+b */
+gsl_complex gsl_complex_sub (gsl_complex a, gsl_complex b);  /* r=a-b */
+gsl_complex gsl_complex_mul (gsl_complex a, gsl_complex b);  /* r=a*b */
+gsl_complex gsl_complex_div (gsl_complex a, gsl_complex b);  /* r=a/b */
+                                                           
+gsl_complex gsl_complex_add_real (gsl_complex a, double x);  /* r=a+x */
+gsl_complex gsl_complex_sub_real (gsl_complex a, double x);  /* r=a-x */
+gsl_complex gsl_complex_mul_real (gsl_complex a, double x);  /* r=a*x */
+gsl_complex gsl_complex_div_real (gsl_complex a, double x);  /* r=a/x */
+
+gsl_complex gsl_complex_add_imag (gsl_complex a, double y);  /* r=a+iy */
+gsl_complex gsl_complex_sub_imag (gsl_complex a, double y);  /* r=a-iy */
+gsl_complex gsl_complex_mul_imag (gsl_complex a, double y);  /* r=a*iy */
+gsl_complex gsl_complex_div_imag (gsl_complex a, double y);  /* r=a/iy */
+
+gsl_complex gsl_complex_conjugate (gsl_complex z);  /* r=conj(z) */
+gsl_complex gsl_complex_inverse (gsl_complex a);    /* r=1/a */
+gsl_complex gsl_complex_negative (gsl_complex a);    /* r=-a */
+
+/* Elementary Complex Functions */
+
+gsl_complex gsl_complex_sqrt (gsl_complex z);  /* r=sqrt(z) */
+gsl_complex gsl_complex_sqrt_real (double x);  /* r=sqrt(x) (x<0 ok) */
+
+gsl_complex gsl_complex_pow (gsl_complex a, gsl_complex b);  /* r=a^b */
+gsl_complex gsl_complex_pow_real (gsl_complex a, double b);  /* r=a^b */
+
+gsl_complex gsl_complex_exp (gsl_complex a);    /* r=exp(a) */
+gsl_complex gsl_complex_log (gsl_complex a);    /* r=log(a) (base e) */
+gsl_complex gsl_complex_log10 (gsl_complex a);  /* r=log10(a) (base 10) */
+gsl_complex gsl_complex_log_b (gsl_complex a, gsl_complex b);   /* r=log_b(a) (base=b) */
+
+/* Complex Trigonometric Functions */
+
+gsl_complex gsl_complex_sin (gsl_complex a);  /* r=sin(a) */
+gsl_complex gsl_complex_cos (gsl_complex a);  /* r=cos(a) */
+gsl_complex gsl_complex_sec (gsl_complex a);  /* r=sec(a) */
+gsl_complex gsl_complex_csc (gsl_complex a);  /* r=csc(a) */
+gsl_complex gsl_complex_tan (gsl_complex a);  /* r=tan(a) */
+gsl_complex gsl_complex_cot (gsl_complex a);  /* r=cot(a) */
+
+/* Inverse Complex Trigonometric Functions */
+
+gsl_complex gsl_complex_arcsin (gsl_complex a);  /* r=arcsin(a) */
+gsl_complex gsl_complex_arcsin_real (double a);  /* r=arcsin(a) */
+gsl_complex gsl_complex_arccos (gsl_complex a);  /* r=arccos(a) */
+gsl_complex gsl_complex_arccos_real (double a);  /* r=arccos(a) */
+gsl_complex gsl_complex_arcsec (gsl_complex a);  /* r=arcsec(a) */
+gsl_complex gsl_complex_arcsec_real (double a);  /* r=arcsec(a) */
+gsl_complex gsl_complex_arccsc (gsl_complex a);  /* r=arccsc(a) */
+gsl_complex gsl_complex_arccsc_real (double a);  /* r=arccsc(a) */
+gsl_complex gsl_complex_arctan (gsl_complex a);  /* r=arctan(a) */
+gsl_complex gsl_complex_arccot (gsl_complex a);  /* r=arccot(a) */
+
+/* Complex Hyperbolic Functions */
+
+gsl_complex gsl_complex_sinh (gsl_complex a);  /* r=sinh(a) */
+gsl_complex gsl_complex_cosh (gsl_complex a);  /* r=coshh(a) */
+gsl_complex gsl_complex_sech (gsl_complex a);  /* r=sech(a) */
+gsl_complex gsl_complex_csch (gsl_complex a);  /* r=csch(a) */
+gsl_complex gsl_complex_tanh (gsl_complex a);  /* r=tanh(a) */
+gsl_complex gsl_complex_coth (gsl_complex a);  /* r=coth(a) */
+
+/* Inverse Complex Hyperbolic Functions */
+
+gsl_complex gsl_complex_arcsinh (gsl_complex a);  /* r=arcsinh(a) */
+gsl_complex gsl_complex_arccosh (gsl_complex a);  /* r=arccosh(a) */
+gsl_complex gsl_complex_arccosh_real (double a);  /* r=arccosh(a) */
+gsl_complex gsl_complex_arcsech (gsl_complex a);  /* r=arcsech(a) */
+gsl_complex gsl_complex_arccsch (gsl_complex a);  /* r=arccsch(a) */
+gsl_complex gsl_complex_arctanh (gsl_complex a);  /* r=arctanh(a) */
+gsl_complex gsl_complex_arctanh_real (double a);  /* r=arctanh(a) */
+gsl_complex gsl_complex_arccoth (gsl_complex a);  /* r=arccoth(a) */
+
+__END_DECLS
+
+#endif /* __GSL_COMPLEX_MATH_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_const.h b/util/X86LINUX64/include/gsl/gsl_const.h
new file mode 100644 (file)
index 0000000..5d749dc
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_const.h
@@ -0,0 +1,31 @@
+/* const/gsl_const.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2004, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_CONST__
+#define __GSL_CONST__
+
+#include <gsl/gsl_const_num.h>
+
+#include <gsl/gsl_const_cgs.h>
+#include <gsl/gsl_const_mks.h>
+
+#include <gsl/gsl_const_cgsm.h>
+#include <gsl/gsl_const_mksa.h>
+
+#endif /* __GSL_CONST__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_const_cgs.h b/util/X86LINUX64/include/gsl/gsl_const_cgs.h
new file mode 100644 (file)
index 0000000..ab95b7b
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_const_cgs.h
@@ -0,0 +1,116 @@
+/* const/gsl_const_cgs.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005,
+ * 2006, 2007, 2008, 2009 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_CONST_CGS__
+#define __GSL_CONST_CGS__
+
+#define GSL_CONST_CGS_SPEED_OF_LIGHT (2.99792458e10) /* cm / s */
+#define GSL_CONST_CGS_GRAVITATIONAL_CONSTANT (6.673e-8) /* cm^3 / g s^2 */
+#define GSL_CONST_CGS_PLANCKS_CONSTANT_H (6.62606896e-27) /* g cm^2 / s */
+#define GSL_CONST_CGS_PLANCKS_CONSTANT_HBAR (1.05457162825e-27) /* g cm^2 / s */
+#define GSL_CONST_CGS_ASTRONOMICAL_UNIT (1.49597870691e13) /* cm */
+#define GSL_CONST_CGS_LIGHT_YEAR (9.46053620707e17) /* cm */
+#define GSL_CONST_CGS_PARSEC (3.08567758135e18) /* cm */
+#define GSL_CONST_CGS_GRAV_ACCEL (9.80665e2) /* cm / s^2 */
+#define GSL_CONST_CGS_ELECTRON_VOLT (1.602176487e-12) /* g cm^2 / s^2 */
+#define GSL_CONST_CGS_MASS_ELECTRON (9.10938188e-28) /* g */
+#define GSL_CONST_CGS_MASS_MUON (1.88353109e-25) /* g */
+#define GSL_CONST_CGS_MASS_PROTON (1.67262158e-24) /* g */
+#define GSL_CONST_CGS_MASS_NEUTRON (1.67492716e-24) /* g */
+#define GSL_CONST_CGS_RYDBERG (2.17987196968e-11) /* g cm^2 / s^2 */
+#define GSL_CONST_CGS_BOLTZMANN (1.3806504e-16) /* g cm^2 / K s^2 */
+#define GSL_CONST_CGS_MOLAR_GAS (8.314472e7) /* g cm^2 / K mol s^2 */
+#define GSL_CONST_CGS_STANDARD_GAS_VOLUME (2.2710981e4) /* cm^3 / mol */
+#define GSL_CONST_CGS_MINUTE (6e1) /* s */
+#define GSL_CONST_CGS_HOUR (3.6e3) /* s */
+#define GSL_CONST_CGS_DAY (8.64e4) /* s */
+#define GSL_CONST_CGS_WEEK (6.048e5) /* s */
+#define GSL_CONST_CGS_INCH (2.54e0) /* cm */
+#define GSL_CONST_CGS_FOOT (3.048e1) /* cm */
+#define GSL_CONST_CGS_YARD (9.144e1) /* cm */
+#define GSL_CONST_CGS_MILE (1.609344e5) /* cm */
+#define GSL_CONST_CGS_NAUTICAL_MILE (1.852e5) /* cm */
+#define GSL_CONST_CGS_FATHOM (1.8288e2) /* cm */
+#define GSL_CONST_CGS_MIL (2.54e-3) /* cm */
+#define GSL_CONST_CGS_POINT (3.52777777778e-2) /* cm */
+#define GSL_CONST_CGS_TEXPOINT (3.51459803515e-2) /* cm */
+#define GSL_CONST_CGS_MICRON (1e-4) /* cm */
+#define GSL_CONST_CGS_ANGSTROM (1e-8) /* cm */
+#define GSL_CONST_CGS_HECTARE (1e8) /* cm^2 */
+#define GSL_CONST_CGS_ACRE (4.04685642241e7) /* cm^2 */
+#define GSL_CONST_CGS_BARN (1e-24) /* cm^2 */
+#define GSL_CONST_CGS_LITER (1e3) /* cm^3 */
+#define GSL_CONST_CGS_US_GALLON (3.78541178402e3) /* cm^3 */
+#define GSL_CONST_CGS_QUART (9.46352946004e2) /* cm^3 */
+#define GSL_CONST_CGS_PINT (4.73176473002e2) /* cm^3 */
+#define GSL_CONST_CGS_CUP (2.36588236501e2) /* cm^3 */
+#define GSL_CONST_CGS_FLUID_OUNCE (2.95735295626e1) /* cm^3 */
+#define GSL_CONST_CGS_TABLESPOON (1.47867647813e1) /* cm^3 */
+#define GSL_CONST_CGS_TEASPOON (4.92892159375e0) /* cm^3 */
+#define GSL_CONST_CGS_CANADIAN_GALLON (4.54609e3) /* cm^3 */
+#define GSL_CONST_CGS_UK_GALLON (4.546092e3) /* cm^3 */
+#define GSL_CONST_CGS_MILES_PER_HOUR (4.4704e1) /* cm / s */
+#define GSL_CONST_CGS_KILOMETERS_PER_HOUR (2.77777777778e1) /* cm / s */
+#define GSL_CONST_CGS_KNOT (5.14444444444e1) /* cm / s */
+#define GSL_CONST_CGS_POUND_MASS (4.5359237e2) /* g */
+#define GSL_CONST_CGS_OUNCE_MASS (2.8349523125e1) /* g */
+#define GSL_CONST_CGS_TON (9.0718474e5) /* g */
+#define GSL_CONST_CGS_METRIC_TON (1e6) /* g */
+#define GSL_CONST_CGS_UK_TON (1.0160469088e6) /* g */
+#define GSL_CONST_CGS_TROY_OUNCE (3.1103475e1) /* g */
+#define GSL_CONST_CGS_CARAT (2e-1) /* g */
+#define GSL_CONST_CGS_UNIFIED_ATOMIC_MASS (1.660538782e-24) /* g */
+#define GSL_CONST_CGS_GRAM_FORCE (9.80665e2) /* cm g / s^2 */
+#define GSL_CONST_CGS_POUND_FORCE (4.44822161526e5) /* cm g / s^2 */
+#define GSL_CONST_CGS_KILOPOUND_FORCE (4.44822161526e8) /* cm g / s^2 */
+#define GSL_CONST_CGS_POUNDAL (1.38255e4) /* cm g / s^2 */
+#define GSL_CONST_CGS_CALORIE (4.1868e7) /* g cm^2 / s^2 */
+#define GSL_CONST_CGS_BTU (1.05505585262e10) /* g cm^2 / s^2 */
+#define GSL_CONST_CGS_THERM (1.05506e15) /* g cm^2 / s^2 */
+#define GSL_CONST_CGS_HORSEPOWER (7.457e9) /* g cm^2 / s^3 */
+#define GSL_CONST_CGS_BAR (1e6) /* g / cm s^2 */
+#define GSL_CONST_CGS_STD_ATMOSPHERE (1.01325e6) /* g / cm s^2 */
+#define GSL_CONST_CGS_TORR (1.33322368421e3) /* g / cm s^2 */
+#define GSL_CONST_CGS_METER_OF_MERCURY (1.33322368421e6) /* g / cm s^2 */
+#define GSL_CONST_CGS_INCH_OF_MERCURY (3.38638815789e4) /* g / cm s^2 */
+#define GSL_CONST_CGS_INCH_OF_WATER (2.490889e3) /* g / cm s^2 */
+#define GSL_CONST_CGS_PSI (6.89475729317e4) /* g / cm s^2 */
+#define GSL_CONST_CGS_POISE (1e0) /* g / cm s */
+#define GSL_CONST_CGS_STOKES (1e0) /* cm^2 / s */
+#define GSL_CONST_CGS_STILB (1e0) /* cd / cm^2 */
+#define GSL_CONST_CGS_LUMEN (1e0) /* cd sr */
+#define GSL_CONST_CGS_LUX (1e-4) /* cd sr / cm^2 */
+#define GSL_CONST_CGS_PHOT (1e0) /* cd sr / cm^2 */
+#define GSL_CONST_CGS_FOOTCANDLE (1.076e-3) /* cd sr / cm^2 */
+#define GSL_CONST_CGS_LAMBERT (1e0) /* cd sr / cm^2 */
+#define GSL_CONST_CGS_FOOTLAMBERT (1.07639104e-3) /* cd sr / cm^2 */
+#define GSL_CONST_CGS_CURIE (3.7e10) /* 1 / s */
+#define GSL_CONST_CGS_ROENTGEN (2.58e-7) /* A s / g */
+#define GSL_CONST_CGS_RAD (1e2) /* cm^2 / s^2 */
+#define GSL_CONST_CGS_SOLAR_MASS (1.98892e33) /* g */
+#define GSL_CONST_CGS_BOHR_RADIUS (5.291772083e-9) /* cm */
+#define GSL_CONST_CGS_NEWTON (1e5) /* cm g / s^2 */
+#define GSL_CONST_CGS_DYNE (1e0) /* cm g / s^2 */
+#define GSL_CONST_CGS_JOULE (1e7) /* g cm^2 / s^2 */
+#define GSL_CONST_CGS_ERG (1e0) /* g cm^2 / s^2 */
+#define GSL_CONST_CGS_STEFAN_BOLTZMANN_CONSTANT (5.67040047374e-5) /* g / K^4 s^3 */
+#define GSL_CONST_CGS_THOMSON_CROSS_SECTION (6.65245893699e-25) /* cm^2 */
+
+#endif /* __GSL_CONST_CGS__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_const_cgsm.h b/util/X86LINUX64/include/gsl/gsl_const_cgsm.h
new file mode 100644 (file)
index 0000000..2047e5e
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_const_cgsm.h
@@ -0,0 +1,122 @@
+/* const/gsl_const_cgsm.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005,
+ * 2006, 2007, 2008, 2009 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_CONST_CGSM__
+#define __GSL_CONST_CGSM__
+
+#define GSL_CONST_CGSM_SPEED_OF_LIGHT (2.99792458e10) /* cm / s */
+#define GSL_CONST_CGSM_GRAVITATIONAL_CONSTANT (6.673e-8) /* cm^3 / g s^2 */
+#define GSL_CONST_CGSM_PLANCKS_CONSTANT_H (6.62606896e-27) /* g cm^2 / s */
+#define GSL_CONST_CGSM_PLANCKS_CONSTANT_HBAR (1.05457162825e-27) /* g cm^2 / s */
+#define GSL_CONST_CGSM_ASTRONOMICAL_UNIT (1.49597870691e13) /* cm */
+#define GSL_CONST_CGSM_LIGHT_YEAR (9.46053620707e17) /* cm */
+#define GSL_CONST_CGSM_PARSEC (3.08567758135e18) /* cm */
+#define GSL_CONST_CGSM_GRAV_ACCEL (9.80665e2) /* cm / s^2 */
+#define GSL_CONST_CGSM_ELECTRON_VOLT (1.602176487e-12) /* g cm^2 / s^2 */
+#define GSL_CONST_CGSM_MASS_ELECTRON (9.10938188e-28) /* g */
+#define GSL_CONST_CGSM_MASS_MUON (1.88353109e-25) /* g */
+#define GSL_CONST_CGSM_MASS_PROTON (1.67262158e-24) /* g */
+#define GSL_CONST_CGSM_MASS_NEUTRON (1.67492716e-24) /* g */
+#define GSL_CONST_CGSM_RYDBERG (2.17987196968e-11) /* g cm^2 / s^2 */
+#define GSL_CONST_CGSM_BOLTZMANN (1.3806504e-16) /* g cm^2 / K s^2 */
+#define GSL_CONST_CGSM_MOLAR_GAS (8.314472e7) /* g cm^2 / K mol s^2 */
+#define GSL_CONST_CGSM_STANDARD_GAS_VOLUME (2.2710981e4) /* cm^3 / mol */
+#define GSL_CONST_CGSM_MINUTE (6e1) /* s */
+#define GSL_CONST_CGSM_HOUR (3.6e3) /* s */
+#define GSL_CONST_CGSM_DAY (8.64e4) /* s */
+#define GSL_CONST_CGSM_WEEK (6.048e5) /* s */
+#define GSL_CONST_CGSM_INCH (2.54e0) /* cm */
+#define GSL_CONST_CGSM_FOOT (3.048e1) /* cm */
+#define GSL_CONST_CGSM_YARD (9.144e1) /* cm */
+#define GSL_CONST_CGSM_MILE (1.609344e5) /* cm */
+#define GSL_CONST_CGSM_NAUTICAL_MILE (1.852e5) /* cm */
+#define GSL_CONST_CGSM_FATHOM (1.8288e2) /* cm */
+#define GSL_CONST_CGSM_MIL (2.54e-3) /* cm */
+#define GSL_CONST_CGSM_POINT (3.52777777778e-2) /* cm */
+#define GSL_CONST_CGSM_TEXPOINT (3.51459803515e-2) /* cm */
+#define GSL_CONST_CGSM_MICRON (1e-4) /* cm */
+#define GSL_CONST_CGSM_ANGSTROM (1e-8) /* cm */
+#define GSL_CONST_CGSM_HECTARE (1e8) /* cm^2 */
+#define GSL_CONST_CGSM_ACRE (4.04685642241e7) /* cm^2 */
+#define GSL_CONST_CGSM_BARN (1e-24) /* cm^2 */
+#define GSL_CONST_CGSM_LITER (1e3) /* cm^3 */
+#define GSL_CONST_CGSM_US_GALLON (3.78541178402e3) /* cm^3 */
+#define GSL_CONST_CGSM_QUART (9.46352946004e2) /* cm^3 */
+#define GSL_CONST_CGSM_PINT (4.73176473002e2) /* cm^3 */
+#define GSL_CONST_CGSM_CUP (2.36588236501e2) /* cm^3 */
+#define GSL_CONST_CGSM_FLUID_OUNCE (2.95735295626e1) /* cm^3 */
+#define GSL_CONST_CGSM_TABLESPOON (1.47867647813e1) /* cm^3 */
+#define GSL_CONST_CGSM_TEASPOON (4.92892159375e0) /* cm^3 */
+#define GSL_CONST_CGSM_CANADIAN_GALLON (4.54609e3) /* cm^3 */
+#define GSL_CONST_CGSM_UK_GALLON (4.546092e3) /* cm^3 */
+#define GSL_CONST_CGSM_MILES_PER_HOUR (4.4704e1) /* cm / s */
+#define GSL_CONST_CGSM_KILOMETERS_PER_HOUR (2.77777777778e1) /* cm / s */
+#define GSL_CONST_CGSM_KNOT (5.14444444444e1) /* cm / s */
+#define GSL_CONST_CGSM_POUND_MASS (4.5359237e2) /* g */
+#define GSL_CONST_CGSM_OUNCE_MASS (2.8349523125e1) /* g */
+#define GSL_CONST_CGSM_TON (9.0718474e5) /* g */
+#define GSL_CONST_CGSM_METRIC_TON (1e6) /* g */
+#define GSL_CONST_CGSM_UK_TON (1.0160469088e6) /* g */
+#define GSL_CONST_CGSM_TROY_OUNCE (3.1103475e1) /* g */
+#define GSL_CONST_CGSM_CARAT (2e-1) /* g */
+#define GSL_CONST_CGSM_UNIFIED_ATOMIC_MASS (1.660538782e-24) /* g */
+#define GSL_CONST_CGSM_GRAM_FORCE (9.80665e2) /* cm g / s^2 */
+#define GSL_CONST_CGSM_POUND_FORCE (4.44822161526e5) /* cm g / s^2 */
+#define GSL_CONST_CGSM_KILOPOUND_FORCE (4.44822161526e8) /* cm g / s^2 */
+#define GSL_CONST_CGSM_POUNDAL (1.38255e4) /* cm g / s^2 */
+#define GSL_CONST_CGSM_CALORIE (4.1868e7) /* g cm^2 / s^2 */
+#define GSL_CONST_CGSM_BTU (1.05505585262e10) /* g cm^2 / s^2 */
+#define GSL_CONST_CGSM_THERM (1.05506e15) /* g cm^2 / s^2 */
+#define GSL_CONST_CGSM_HORSEPOWER (7.457e9) /* g cm^2 / s^3 */
+#define GSL_CONST_CGSM_BAR (1e6) /* g / cm s^2 */
+#define GSL_CONST_CGSM_STD_ATMOSPHERE (1.01325e6) /* g / cm s^2 */
+#define GSL_CONST_CGSM_TORR (1.33322368421e3) /* g / cm s^2 */
+#define GSL_CONST_CGSM_METER_OF_MERCURY (1.33322368421e6) /* g / cm s^2 */
+#define GSL_CONST_CGSM_INCH_OF_MERCURY (3.38638815789e4) /* g / cm s^2 */
+#define GSL_CONST_CGSM_INCH_OF_WATER (2.490889e3) /* g / cm s^2 */
+#define GSL_CONST_CGSM_PSI (6.89475729317e4) /* g / cm s^2 */
+#define GSL_CONST_CGSM_POISE (1e0) /* g / cm s */
+#define GSL_CONST_CGSM_STOKES (1e0) /* cm^2 / s */
+#define GSL_CONST_CGSM_STILB (1e0) /* cd / cm^2 */
+#define GSL_CONST_CGSM_LUMEN (1e0) /* cd sr */
+#define GSL_CONST_CGSM_LUX (1e-4) /* cd sr / cm^2 */
+#define GSL_CONST_CGSM_PHOT (1e0) /* cd sr / cm^2 */
+#define GSL_CONST_CGSM_FOOTCANDLE (1.076e-3) /* cd sr / cm^2 */
+#define GSL_CONST_CGSM_LAMBERT (1e0) /* cd sr / cm^2 */
+#define GSL_CONST_CGSM_FOOTLAMBERT (1.07639104e-3) /* cd sr / cm^2 */
+#define GSL_CONST_CGSM_CURIE (3.7e10) /* 1 / s */
+#define GSL_CONST_CGSM_ROENTGEN (2.58e-8) /* abamp s / g */
+#define GSL_CONST_CGSM_RAD (1e2) /* cm^2 / s^2 */
+#define GSL_CONST_CGSM_SOLAR_MASS (1.98892e33) /* g */
+#define GSL_CONST_CGSM_BOHR_RADIUS (5.291772083e-9) /* cm */
+#define GSL_CONST_CGSM_NEWTON (1e5) /* cm g / s^2 */
+#define GSL_CONST_CGSM_DYNE (1e0) /* cm g / s^2 */
+#define GSL_CONST_CGSM_JOULE (1e7) /* g cm^2 / s^2 */
+#define GSL_CONST_CGSM_ERG (1e0) /* g cm^2 / s^2 */
+#define GSL_CONST_CGSM_STEFAN_BOLTZMANN_CONSTANT (5.67040047374e-5) /* g / K^4 s^3 */
+#define GSL_CONST_CGSM_THOMSON_CROSS_SECTION (6.65245893699e-25) /* cm^2 */
+#define GSL_CONST_CGSM_BOHR_MAGNETON (9.27400899e-21) /* abamp cm^2 */
+#define GSL_CONST_CGSM_NUCLEAR_MAGNETON (5.05078317e-24) /* abamp cm^2 */
+#define GSL_CONST_CGSM_ELECTRON_MAGNETIC_MOMENT (9.28476362e-21) /* abamp cm^2 */
+#define GSL_CONST_CGSM_PROTON_MAGNETIC_MOMENT (1.410606633e-23) /* abamp cm^2 */
+#define GSL_CONST_CGSM_FARADAY (9.64853429775e3) /* abamp s / mol */
+#define GSL_CONST_CGSM_ELECTRON_CHARGE (1.602176487e-20) /* abamp s */
+
+#endif /* __GSL_CONST_CGSM__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_const_mks.h b/util/X86LINUX64/include/gsl/gsl_const_mks.h
new file mode 100644 (file)
index 0000000..bc60e2a
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_const_mks.h
@@ -0,0 +1,126 @@
+/* const/gsl_const_mks.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005,
+ * 2006, 2007, 2008, 2009 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_CONST_MKS__
+#define __GSL_CONST_MKS__
+
+#define GSL_CONST_MKS_SPEED_OF_LIGHT (2.99792458e8) /* m / s */
+#define GSL_CONST_MKS_GRAVITATIONAL_CONSTANT (6.673e-11) /* m^3 / kg s^2 */
+#define GSL_CONST_MKS_PLANCKS_CONSTANT_H (6.62606896e-34) /* kg m^2 / s */
+#define GSL_CONST_MKS_PLANCKS_CONSTANT_HBAR (1.05457162825e-34) /* kg m^2 / s */
+#define GSL_CONST_MKS_ASTRONOMICAL_UNIT (1.49597870691e11) /* m */
+#define GSL_CONST_MKS_LIGHT_YEAR (9.46053620707e15) /* m */
+#define GSL_CONST_MKS_PARSEC (3.08567758135e16) /* m */
+#define GSL_CONST_MKS_GRAV_ACCEL (9.80665e0) /* m / s^2 */
+#define GSL_CONST_MKS_ELECTRON_VOLT (1.602176487e-19) /* kg m^2 / s^2 */
+#define GSL_CONST_MKS_MASS_ELECTRON (9.10938188e-31) /* kg */
+#define GSL_CONST_MKS_MASS_MUON (1.88353109e-28) /* kg */
+#define GSL_CONST_MKS_MASS_PROTON (1.67262158e-27) /* kg */
+#define GSL_CONST_MKS_MASS_NEUTRON (1.67492716e-27) /* kg */
+#define GSL_CONST_MKS_RYDBERG (2.17987196968e-18) /* kg m^2 / s^2 */
+#define GSL_CONST_MKS_BOLTZMANN (1.3806504e-23) /* kg m^2 / K s^2 */
+#define GSL_CONST_MKS_MOLAR_GAS (8.314472e0) /* kg m^2 / K mol s^2 */
+#define GSL_CONST_MKS_STANDARD_GAS_VOLUME (2.2710981e-2) /* m^3 / mol */
+#define GSL_CONST_MKS_MINUTE (6e1) /* s */
+#define GSL_CONST_MKS_HOUR (3.6e3) /* s */
+#define GSL_CONST_MKS_DAY (8.64e4) /* s */
+#define GSL_CONST_MKS_WEEK (6.048e5) /* s */
+#define GSL_CONST_MKS_INCH (2.54e-2) /* m */
+#define GSL_CONST_MKS_FOOT (3.048e-1) /* m */
+#define GSL_CONST_MKS_YARD (9.144e-1) /* m */
+#define GSL_CONST_MKS_MILE (1.609344e3) /* m */
+#define GSL_CONST_MKS_NAUTICAL_MILE (1.852e3) /* m */
+#define GSL_CONST_MKS_FATHOM (1.8288e0) /* m */
+#define GSL_CONST_MKS_MIL (2.54e-5) /* m */
+#define GSL_CONST_MKS_POINT (3.52777777778e-4) /* m */
+#define GSL_CONST_MKS_TEXPOINT (3.51459803515e-4) /* m */
+#define GSL_CONST_MKS_MICRON (1e-6) /* m */
+#define GSL_CONST_MKS_ANGSTROM (1e-10) /* m */
+#define GSL_CONST_MKS_HECTARE (1e4) /* m^2 */
+#define GSL_CONST_MKS_ACRE (4.04685642241e3) /* m^2 */
+#define GSL_CONST_MKS_BARN (1e-28) /* m^2 */
+#define GSL_CONST_MKS_LITER (1e-3) /* m^3 */
+#define GSL_CONST_MKS_US_GALLON (3.78541178402e-3) /* m^3 */
+#define GSL_CONST_MKS_QUART (9.46352946004e-4) /* m^3 */
+#define GSL_CONST_MKS_PINT (4.73176473002e-4) /* m^3 */
+#define GSL_CONST_MKS_CUP (2.36588236501e-4) /* m^3 */
+#define GSL_CONST_MKS_FLUID_OUNCE (2.95735295626e-5) /* m^3 */
+#define GSL_CONST_MKS_TABLESPOON (1.47867647813e-5) /* m^3 */
+#define GSL_CONST_MKS_TEASPOON (4.92892159375e-6) /* m^3 */
+#define GSL_CONST_MKS_CANADIAN_GALLON (4.54609e-3) /* m^3 */
+#define GSL_CONST_MKS_UK_GALLON (4.546092e-3) /* m^3 */
+#define GSL_CONST_MKS_MILES_PER_HOUR (4.4704e-1) /* m / s */
+#define GSL_CONST_MKS_KILOMETERS_PER_HOUR (2.77777777778e-1) /* m / s */
+#define GSL_CONST_MKS_KNOT (5.14444444444e-1) /* m / s */
+#define GSL_CONST_MKS_POUND_MASS (4.5359237e-1) /* kg */
+#define GSL_CONST_MKS_OUNCE_MASS (2.8349523125e-2) /* kg */
+#define GSL_CONST_MKS_TON (9.0718474e2) /* kg */
+#define GSL_CONST_MKS_METRIC_TON (1e3) /* kg */
+#define GSL_CONST_MKS_UK_TON (1.0160469088e3) /* kg */
+#define GSL_CONST_MKS_TROY_OUNCE (3.1103475e-2) /* kg */
+#define GSL_CONST_MKS_CARAT (2e-4) /* kg */
+#define GSL_CONST_MKS_UNIFIED_ATOMIC_MASS (1.660538782e-27) /* kg */
+#define GSL_CONST_MKS_GRAM_FORCE (9.80665e-3) /* kg m / s^2 */
+#define GSL_CONST_MKS_POUND_FORCE (4.44822161526e0) /* kg m / s^2 */
+#define GSL_CONST_MKS_KILOPOUND_FORCE (4.44822161526e3) /* kg m / s^2 */
+#define GSL_CONST_MKS_POUNDAL (1.38255e-1) /* kg m / s^2 */
+#define GSL_CONST_MKS_CALORIE (4.1868e0) /* kg m^2 / s^2 */
+#define GSL_CONST_MKS_BTU (1.05505585262e3) /* kg m^2 / s^2 */
+#define GSL_CONST_MKS_THERM (1.05506e8) /* kg m^2 / s^2 */
+#define GSL_CONST_MKS_HORSEPOWER (7.457e2) /* kg m^2 / s^3 */
+#define GSL_CONST_MKS_BAR (1e5) /* kg / m s^2 */
+#define GSL_CONST_MKS_STD_ATMOSPHERE (1.01325e5) /* kg / m s^2 */
+#define GSL_CONST_MKS_TORR (1.33322368421e2) /* kg / m s^2 */
+#define GSL_CONST_MKS_METER_OF_MERCURY (1.33322368421e5) /* kg / m s^2 */
+#define GSL_CONST_MKS_INCH_OF_MERCURY (3.38638815789e3) /* kg / m s^2 */
+#define GSL_CONST_MKS_INCH_OF_WATER (2.490889e2) /* kg / m s^2 */
+#define GSL_CONST_MKS_PSI (6.89475729317e3) /* kg / m s^2 */
+#define GSL_CONST_MKS_POISE (1e-1) /* kg m^-1 s^-1 */
+#define GSL_CONST_MKS_STOKES (1e-4) /* m^2 / s */
+#define GSL_CONST_MKS_STILB (1e4) /* cd / m^2 */
+#define GSL_CONST_MKS_LUMEN (1e0) /* cd sr */
+#define GSL_CONST_MKS_LUX (1e0) /* cd sr / m^2 */
+#define GSL_CONST_MKS_PHOT (1e4) /* cd sr / m^2 */
+#define GSL_CONST_MKS_FOOTCANDLE (1.076e1) /* cd sr / m^2 */
+#define GSL_CONST_MKS_LAMBERT (1e4) /* cd sr / m^2 */
+#define GSL_CONST_MKS_FOOTLAMBERT (1.07639104e1) /* cd sr / m^2 */
+#define GSL_CONST_MKS_CURIE (3.7e10) /* 1 / s */
+#define GSL_CONST_MKS_ROENTGEN (2.58e-4) /* A s / kg */
+#define GSL_CONST_MKS_RAD (1e-2) /* m^2 / s^2 */
+#define GSL_CONST_MKS_SOLAR_MASS (1.98892e30) /* kg */
+#define GSL_CONST_MKS_BOHR_RADIUS (5.291772083e-11) /* m */
+#define GSL_CONST_MKS_NEWTON (1e0) /* kg m / s^2 */
+#define GSL_CONST_MKS_DYNE (1e-5) /* kg m / s^2 */
+#define GSL_CONST_MKS_JOULE (1e0) /* kg m^2 / s^2 */
+#define GSL_CONST_MKS_ERG (1e-7) /* kg m^2 / s^2 */
+#define GSL_CONST_MKS_STEFAN_BOLTZMANN_CONSTANT (5.67040047374e-8) /* kg / K^4 s^3 */
+#define GSL_CONST_MKS_THOMSON_CROSS_SECTION (6.65245893699e-29) /* m^2 */
+#define GSL_CONST_MKS_BOHR_MAGNETON (9.27400899e-24) /* A m^2 */
+#define GSL_CONST_MKS_NUCLEAR_MAGNETON (5.05078317e-27) /* A m^2 */
+#define GSL_CONST_MKS_ELECTRON_MAGNETIC_MOMENT (9.28476362e-24) /* A m^2 */
+#define GSL_CONST_MKS_PROTON_MAGNETIC_MOMENT (1.410606633e-26) /* A m^2 */
+#define GSL_CONST_MKS_FARADAY (9.64853429775e4) /* A s / mol */
+#define GSL_CONST_MKS_ELECTRON_CHARGE (1.602176487e-19) /* A s */
+#define GSL_CONST_MKS_VACUUM_PERMITTIVITY (8.854187817e-12) /* A^2 s^4 / kg m^3 */
+#define GSL_CONST_MKS_VACUUM_PERMEABILITY (1.25663706144e-6) /* kg m / A^2 s^2 */
+#define GSL_CONST_MKS_DEBYE (3.33564095198e-30) /* A s^2 / m^2 */
+#define GSL_CONST_MKS_GAUSS (1e-4) /* kg / A s^2 */
+
+#endif /* __GSL_CONST_MKS__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_const_mksa.h b/util/X86LINUX64/include/gsl/gsl_const_mksa.h
new file mode 100644 (file)
index 0000000..5d91d1c
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_const_mksa.h
@@ -0,0 +1,126 @@
+/* const/gsl_const_mksa.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005,
+ * 2006, 2007, 2008, 2009 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_CONST_MKSA__
+#define __GSL_CONST_MKSA__
+
+#define GSL_CONST_MKSA_SPEED_OF_LIGHT (2.99792458e8) /* m / s */
+#define GSL_CONST_MKSA_GRAVITATIONAL_CONSTANT (6.673e-11) /* m^3 / kg s^2 */
+#define GSL_CONST_MKSA_PLANCKS_CONSTANT_H (6.62606896e-34) /* kg m^2 / s */
+#define GSL_CONST_MKSA_PLANCKS_CONSTANT_HBAR (1.05457162825e-34) /* kg m^2 / s */
+#define GSL_CONST_MKSA_ASTRONOMICAL_UNIT (1.49597870691e11) /* m */
+#define GSL_CONST_MKSA_LIGHT_YEAR (9.46053620707e15) /* m */
+#define GSL_CONST_MKSA_PARSEC (3.08567758135e16) /* m */
+#define GSL_CONST_MKSA_GRAV_ACCEL (9.80665e0) /* m / s^2 */
+#define GSL_CONST_MKSA_ELECTRON_VOLT (1.602176487e-19) /* kg m^2 / s^2 */
+#define GSL_CONST_MKSA_MASS_ELECTRON (9.10938188e-31) /* kg */
+#define GSL_CONST_MKSA_MASS_MUON (1.88353109e-28) /* kg */
+#define GSL_CONST_MKSA_MASS_PROTON (1.67262158e-27) /* kg */
+#define GSL_CONST_MKSA_MASS_NEUTRON (1.67492716e-27) /* kg */
+#define GSL_CONST_MKSA_RYDBERG (2.17987196968e-18) /* kg m^2 / s^2 */
+#define GSL_CONST_MKSA_BOLTZMANN (1.3806504e-23) /* kg m^2 / K s^2 */
+#define GSL_CONST_MKSA_MOLAR_GAS (8.314472e0) /* kg m^2 / K mol s^2 */
+#define GSL_CONST_MKSA_STANDARD_GAS_VOLUME (2.2710981e-2) /* m^3 / mol */
+#define GSL_CONST_MKSA_MINUTE (6e1) /* s */
+#define GSL_CONST_MKSA_HOUR (3.6e3) /* s */
+#define GSL_CONST_MKSA_DAY (8.64e4) /* s */
+#define GSL_CONST_MKSA_WEEK (6.048e5) /* s */
+#define GSL_CONST_MKSA_INCH (2.54e-2) /* m */
+#define GSL_CONST_MKSA_FOOT (3.048e-1) /* m */
+#define GSL_CONST_MKSA_YARD (9.144e-1) /* m */
+#define GSL_CONST_MKSA_MILE (1.609344e3) /* m */
+#define GSL_CONST_MKSA_NAUTICAL_MILE (1.852e3) /* m */
+#define GSL_CONST_MKSA_FATHOM (1.8288e0) /* m */
+#define GSL_CONST_MKSA_MIL (2.54e-5) /* m */
+#define GSL_CONST_MKSA_POINT (3.52777777778e-4) /* m */
+#define GSL_CONST_MKSA_TEXPOINT (3.51459803515e-4) /* m */
+#define GSL_CONST_MKSA_MICRON (1e-6) /* m */
+#define GSL_CONST_MKSA_ANGSTROM (1e-10) /* m */
+#define GSL_CONST_MKSA_HECTARE (1e4) /* m^2 */
+#define GSL_CONST_MKSA_ACRE (4.04685642241e3) /* m^2 */
+#define GSL_CONST_MKSA_BARN (1e-28) /* m^2 */
+#define GSL_CONST_MKSA_LITER (1e-3) /* m^3 */
+#define GSL_CONST_MKSA_US_GALLON (3.78541178402e-3) /* m^3 */
+#define GSL_CONST_MKSA_QUART (9.46352946004e-4) /* m^3 */
+#define GSL_CONST_MKSA_PINT (4.73176473002e-4) /* m^3 */
+#define GSL_CONST_MKSA_CUP (2.36588236501e-4) /* m^3 */
+#define GSL_CONST_MKSA_FLUID_OUNCE (2.95735295626e-5) /* m^3 */
+#define GSL_CONST_MKSA_TABLESPOON (1.47867647813e-5) /* m^3 */
+#define GSL_CONST_MKSA_TEASPOON (4.92892159375e-6) /* m^3 */
+#define GSL_CONST_MKSA_CANADIAN_GALLON (4.54609e-3) /* m^3 */
+#define GSL_CONST_MKSA_UK_GALLON (4.546092e-3) /* m^3 */
+#define GSL_CONST_MKSA_MILES_PER_HOUR (4.4704e-1) /* m / s */
+#define GSL_CONST_MKSA_KILOMETERS_PER_HOUR (2.77777777778e-1) /* m / s */
+#define GSL_CONST_MKSA_KNOT (5.14444444444e-1) /* m / s */
+#define GSL_CONST_MKSA_POUND_MASS (4.5359237e-1) /* kg */
+#define GSL_CONST_MKSA_OUNCE_MASS (2.8349523125e-2) /* kg */
+#define GSL_CONST_MKSA_TON (9.0718474e2) /* kg */
+#define GSL_CONST_MKSA_METRIC_TON (1e3) /* kg */
+#define GSL_CONST_MKSA_UK_TON (1.0160469088e3) /* kg */
+#define GSL_CONST_MKSA_TROY_OUNCE (3.1103475e-2) /* kg */
+#define GSL_CONST_MKSA_CARAT (2e-4) /* kg */
+#define GSL_CONST_MKSA_UNIFIED_ATOMIC_MASS (1.660538782e-27) /* kg */
+#define GSL_CONST_MKSA_GRAM_FORCE (9.80665e-3) /* kg m / s^2 */
+#define GSL_CONST_MKSA_POUND_FORCE (4.44822161526e0) /* kg m / s^2 */
+#define GSL_CONST_MKSA_KILOPOUND_FORCE (4.44822161526e3) /* kg m / s^2 */
+#define GSL_CONST_MKSA_POUNDAL (1.38255e-1) /* kg m / s^2 */
+#define GSL_CONST_MKSA_CALORIE (4.1868e0) /* kg m^2 / s^2 */
+#define GSL_CONST_MKSA_BTU (1.05505585262e3) /* kg m^2 / s^2 */
+#define GSL_CONST_MKSA_THERM (1.05506e8) /* kg m^2 / s^2 */
+#define GSL_CONST_MKSA_HORSEPOWER (7.457e2) /* kg m^2 / s^3 */
+#define GSL_CONST_MKSA_BAR (1e5) /* kg / m s^2 */
+#define GSL_CONST_MKSA_STD_ATMOSPHERE (1.01325e5) /* kg / m s^2 */
+#define GSL_CONST_MKSA_TORR (1.33322368421e2) /* kg / m s^2 */
+#define GSL_CONST_MKSA_METER_OF_MERCURY (1.33322368421e5) /* kg / m s^2 */
+#define GSL_CONST_MKSA_INCH_OF_MERCURY (3.38638815789e3) /* kg / m s^2 */
+#define GSL_CONST_MKSA_INCH_OF_WATER (2.490889e2) /* kg / m s^2 */
+#define GSL_CONST_MKSA_PSI (6.89475729317e3) /* kg / m s^2 */
+#define GSL_CONST_MKSA_POISE (1e-1) /* kg m^-1 s^-1 */
+#define GSL_CONST_MKSA_STOKES (1e-4) /* m^2 / s */
+#define GSL_CONST_MKSA_STILB (1e4) /* cd / m^2 */
+#define GSL_CONST_MKSA_LUMEN (1e0) /* cd sr */
+#define GSL_CONST_MKSA_LUX (1e0) /* cd sr / m^2 */
+#define GSL_CONST_MKSA_PHOT (1e4) /* cd sr / m^2 */
+#define GSL_CONST_MKSA_FOOTCANDLE (1.076e1) /* cd sr / m^2 */
+#define GSL_CONST_MKSA_LAMBERT (1e4) /* cd sr / m^2 */
+#define GSL_CONST_MKSA_FOOTLAMBERT (1.07639104e1) /* cd sr / m^2 */
+#define GSL_CONST_MKSA_CURIE (3.7e10) /* 1 / s */
+#define GSL_CONST_MKSA_ROENTGEN (2.58e-4) /* A s / kg */
+#define GSL_CONST_MKSA_RAD (1e-2) /* m^2 / s^2 */
+#define GSL_CONST_MKSA_SOLAR_MASS (1.98892e30) /* kg */
+#define GSL_CONST_MKSA_BOHR_RADIUS (5.291772083e-11) /* m */
+#define GSL_CONST_MKSA_NEWTON (1e0) /* kg m / s^2 */
+#define GSL_CONST_MKSA_DYNE (1e-5) /* kg m / s^2 */
+#define GSL_CONST_MKSA_JOULE (1e0) /* kg m^2 / s^2 */
+#define GSL_CONST_MKSA_ERG (1e-7) /* kg m^2 / s^2 */
+#define GSL_CONST_MKSA_STEFAN_BOLTZMANN_CONSTANT (5.67040047374e-8) /* kg / K^4 s^3 */
+#define GSL_CONST_MKSA_THOMSON_CROSS_SECTION (6.65245893699e-29) /* m^2 */
+#define GSL_CONST_MKSA_BOHR_MAGNETON (9.27400899e-24) /* A m^2 */
+#define GSL_CONST_MKSA_NUCLEAR_MAGNETON (5.05078317e-27) /* A m^2 */
+#define GSL_CONST_MKSA_ELECTRON_MAGNETIC_MOMENT (9.28476362e-24) /* A m^2 */
+#define GSL_CONST_MKSA_PROTON_MAGNETIC_MOMENT (1.410606633e-26) /* A m^2 */
+#define GSL_CONST_MKSA_FARADAY (9.64853429775e4) /* A s / mol */
+#define GSL_CONST_MKSA_ELECTRON_CHARGE (1.602176487e-19) /* A s */
+#define GSL_CONST_MKSA_VACUUM_PERMITTIVITY (8.854187817e-12) /* A^2 s^4 / kg m^3 */
+#define GSL_CONST_MKSA_VACUUM_PERMEABILITY (1.25663706144e-6) /* kg m / A^2 s^2 */
+#define GSL_CONST_MKSA_DEBYE (3.33564095198e-30) /* A s^2 / m^2 */
+#define GSL_CONST_MKSA_GAUSS (1e-4) /* kg / A s^2 */
+
+#endif /* __GSL_CONST_MKSA__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_const_num.h b/util/X86LINUX64/include/gsl/gsl_const_num.h
new file mode 100644 (file)
index 0000000..385a660
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_const_num.h
@@ -0,0 +1,43 @@
+/* const/gsl_const_num.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005,
+ * 2006, 2007, 2008, 2009 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_CONST_NUM__
+#define __GSL_CONST_NUM__
+
+#define GSL_CONST_NUM_FINE_STRUCTURE (7.297352533e-3) /* 1 */
+#define GSL_CONST_NUM_AVOGADRO (6.02214199e23) /* 1 / mol */
+#define GSL_CONST_NUM_YOTTA (1e24) /* 1 */
+#define GSL_CONST_NUM_ZETTA (1e21) /* 1 */
+#define GSL_CONST_NUM_EXA (1e18) /* 1 */
+#define GSL_CONST_NUM_PETA (1e15) /* 1 */
+#define GSL_CONST_NUM_TERA (1e12) /* 1 */
+#define GSL_CONST_NUM_GIGA (1e9) /* 1 */
+#define GSL_CONST_NUM_MEGA (1e6) /* 1 */
+#define GSL_CONST_NUM_KILO (1e3) /* 1 */
+#define GSL_CONST_NUM_MILLI (1e-3) /* 1 */
+#define GSL_CONST_NUM_MICRO (1e-6) /* 1 */
+#define GSL_CONST_NUM_NANO (1e-9) /* 1 */
+#define GSL_CONST_NUM_PICO (1e-12) /* 1 */
+#define GSL_CONST_NUM_FEMTO (1e-15) /* 1 */
+#define GSL_CONST_NUM_ATTO (1e-18) /* 1 */
+#define GSL_CONST_NUM_ZEPTO (1e-21) /* 1 */
+#define GSL_CONST_NUM_YOCTO (1e-24) /* 1 */
+
+#endif /* __GSL_CONST_NUM__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_deriv.h b/util/X86LINUX64/include/gsl/gsl_deriv.h
new file mode 100644 (file)
index 0000000..7f4694f
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_deriv.h
@@ -0,0 +1,50 @@
+/* deriv/gsl_deriv.h
+ * 
+ * Copyright (C) 2000 David Morrison
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_DERIV_H__
+#define __GSL_DERIV_H__
+#include <gsl/gsl_math.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_deriv_central (const gsl_function *f,
+                       double x, double h,
+                       double *result, double *abserr);
+
+int gsl_deriv_backward (const gsl_function *f,
+                        double x, double h,
+                        double *result, double *abserr);
+
+int gsl_deriv_forward (const gsl_function *f,
+                       double x, double h,
+                       double *result, double *abserr);
+
+__END_DECLS
+
+#endif /* __GSL_DERIV_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_dft_complex.h b/util/X86LINUX64/include/gsl/gsl_dft_complex.h
new file mode 100644 (file)
index 0000000..cb4d088
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_dft_complex.h
@@ -0,0 +1,55 @@
+/* fft/gsl_dft_complex.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_DFT_COMPLEX_H__
+#define __GSL_DFT_COMPLEX_H__
+
+#include <stddef.h>
+
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_fft.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_dft_complex_forward (const double data[], const size_t stride, const size_t n,
+                             double result[]);
+
+int gsl_dft_complex_backward (const double data[], const size_t stride, const size_t n,
+                              double result[]);
+
+int gsl_dft_complex_inverse (const double data[], const size_t stride, const size_t n,
+                             double result[]);
+
+int gsl_dft_complex_transform (const double data[], const size_t stride, const size_t n,
+                     double result[], const gsl_fft_direction sign);
+
+__END_DECLS
+
+#endif /* __GSL_DFT_COMPLEX_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_dft_complex_float.h b/util/X86LINUX64/include/gsl/gsl_dft_complex_float.h
new file mode 100644 (file)
index 0000000..c511ac0
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_dft_complex_float.h
@@ -0,0 +1,55 @@
+/* fft/gsl_dft_complex_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_DFT_COMPLEX_FLOAT_H__
+#define __GSL_DFT_COMPLEX_FLOAT_H__
+
+#include <stddef.h>
+
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_fft.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_dft_complex_float_forward (const float data[], const size_t stride, const size_t n,
+                             float result[]);
+
+int gsl_dft_complex_float_backward (const float data[], const size_t stride, const size_t n,
+                              float result[]);
+
+int gsl_dft_complex_float_inverse (const float data[], const size_t stride, const size_t n,
+                             float result[]);
+
+int gsl_dft_complex_float_transform (const float data[], const size_t stride, const size_t n,
+                     float result[], const gsl_fft_direction sign);
+
+__END_DECLS
+
+#endif /* __GSL_DFT_COMPLEX_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_dht.h b/util/X86LINUX64/include/gsl/gsl_dht.h
new file mode 100644 (file)
index 0000000..bfc4b2f
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_dht.h
@@ -0,0 +1,87 @@
+/* dht/gsl_dht.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman
+ */
+#ifndef __GSL_DHT_H__
+#define __GSL_DHT_H__
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+struct gsl_dht_struct {
+  size_t    size;  /* size of the sample arrays to be transformed    */
+  double    nu;    /* Bessel function order                          */
+  double    xmax;  /* the upper limit to the x-sampling domain       */
+  double    kmax;  /* the upper limit to the k-sampling domain       */
+  double *  j;     /* array of computed J_nu zeros, j_{nu,s} = j[s]  */
+  double *  Jjj;   /* transform numerator, J_nu(j_i j_m / j_N)       */
+  double *  J2;    /* transform denominator, J_{nu+1}^2(j_m)         */
+};
+typedef struct gsl_dht_struct gsl_dht;
+
+
+/* Create a new transform object for a given size
+ * sampling array on the domain [0, xmax].
+ */
+gsl_dht * gsl_dht_alloc(size_t size);
+gsl_dht * gsl_dht_new(size_t size, double nu, double xmax);
+
+/* Recalculate a transform object for given values of nu, xmax.
+ * You cannot change the size of the object since the internal
+ * allocation is reused.
+ */
+int gsl_dht_init(gsl_dht * t, double nu, double xmax);
+
+/* The n'th computed x sample point for a given transform.
+ * 0 <= n <= size-1
+ */
+double gsl_dht_x_sample(const gsl_dht * t, int n);
+
+
+/* The n'th computed k sample point for a given transform.
+ * 0 <= n <= size-1
+ */
+double gsl_dht_k_sample(const gsl_dht * t, int n);
+
+
+/* Free a transform object.
+ */
+void gsl_dht_free(gsl_dht * t);
+
+
+/* Perform a transform on a sampled array.
+ * f_in[0] ... f_in[size-1] and similarly for f_out[]
+ */
+int gsl_dht_apply(const gsl_dht * t, double * f_in, double * f_out);
+
+
+__END_DECLS
+
+#endif /* __GSL_DHT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_diff.h b/util/X86LINUX64/include/gsl/gsl_diff.h
new file mode 100644 (file)
index 0000000..a145894
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_diff.h
@@ -0,0 +1,52 @@
+/* diff/gsl_diff.h
+ * 
+ * Copyright (C) 2000 David Morrison
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_DIFF_H__
+#define __GSL_DIFF_H__
+#include <gsl/gsl_math.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+#ifndef GSL_DISABLE_DEPRECATED
+int gsl_diff_central (const gsl_function *f,
+                      double x,
+                      double *result, double *abserr);
+
+int gsl_diff_backward (const gsl_function *f,
+                       double x,
+                       double *result, double *abserr);
+
+int gsl_diff_forward (const gsl_function *f,
+                      double x,
+                      double *result, double *abserr);
+#endif
+
+__END_DECLS
+
+#endif /* __GSL_DIFF_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_eigen.h b/util/X86LINUX64/include/gsl/gsl_eigen.h
new file mode 100644 (file)
index 0000000..6de8dba
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_eigen.h
@@ -0,0 +1,347 @@
+/* eigen/gsl_eigen.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2006, 2007 Gerard Jungman, Brian Gough, Patrick Alken
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_EIGEN_H__
+#define __GSL_EIGEN_H__
+
+#include <gsl/gsl_vector.h>
+#include <gsl/gsl_matrix.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct {
+  size_t size;
+  double * d;
+  double * sd;
+} gsl_eigen_symm_workspace;
+
+gsl_eigen_symm_workspace * gsl_eigen_symm_alloc (const size_t n);
+void gsl_eigen_symm_free (gsl_eigen_symm_workspace * w);
+int gsl_eigen_symm (gsl_matrix * A, gsl_vector * eval, gsl_eigen_symm_workspace * w);
+
+typedef struct {
+  size_t size;
+  double * d;
+  double * sd;
+  double * gc;
+  double * gs;
+} gsl_eigen_symmv_workspace;
+
+gsl_eigen_symmv_workspace * gsl_eigen_symmv_alloc (const size_t n);
+void gsl_eigen_symmv_free (gsl_eigen_symmv_workspace * w);
+int gsl_eigen_symmv (gsl_matrix * A, gsl_vector * eval, gsl_matrix * evec, gsl_eigen_symmv_workspace * w);
+
+typedef struct {
+  size_t size;
+  double * d;
+  double * sd;
+  double * tau;
+} gsl_eigen_herm_workspace;
+
+gsl_eigen_herm_workspace * gsl_eigen_herm_alloc (const size_t n);
+void gsl_eigen_herm_free (gsl_eigen_herm_workspace * w);
+int gsl_eigen_herm (gsl_matrix_complex * A, gsl_vector * eval,
+                         gsl_eigen_herm_workspace * w);
+
+typedef struct {
+  size_t size;
+  double * d;
+  double * sd;
+  double * tau;
+  double * gc;
+  double * gs;
+} gsl_eigen_hermv_workspace;
+
+gsl_eigen_hermv_workspace * gsl_eigen_hermv_alloc (const size_t n);
+void gsl_eigen_hermv_free (gsl_eigen_hermv_workspace * w);
+int gsl_eigen_hermv (gsl_matrix_complex * A, gsl_vector * eval, 
+                           gsl_matrix_complex * evec,
+                           gsl_eigen_hermv_workspace * w);
+
+typedef struct {
+  size_t size;           /* matrix size */
+  size_t max_iterations; /* max iterations since last eigenvalue found */
+  size_t n_iter;         /* number of iterations since last eigenvalue found */
+  size_t n_evals;        /* number of eigenvalues found so far */
+
+  int compute_t;         /* compute Schur form T = Z^t A Z */
+
+  gsl_matrix *H;         /* pointer to Hessenberg matrix */
+  gsl_matrix *Z;         /* pointer to Schur vector matrix */
+} gsl_eigen_francis_workspace;
+
+gsl_eigen_francis_workspace * gsl_eigen_francis_alloc (void);
+void gsl_eigen_francis_free (gsl_eigen_francis_workspace * w);
+void gsl_eigen_francis_T (const int compute_t,
+                          gsl_eigen_francis_workspace * w);
+int gsl_eigen_francis (gsl_matrix * H, gsl_vector_complex * eval,
+                       gsl_eigen_francis_workspace * w);
+int gsl_eigen_francis_Z (gsl_matrix * H, gsl_vector_complex * eval,
+                         gsl_matrix * Z,
+                         gsl_eigen_francis_workspace * w);
+
+typedef struct {
+  size_t size;                 /* size of matrices */
+  gsl_vector *diag;            /* diagonal matrix elements from balancing */
+  gsl_vector *tau;             /* Householder coefficients */
+  gsl_matrix *Z;               /* pointer to Z matrix */
+  int do_balance;              /* perform balancing transformation? */
+  size_t n_evals;              /* number of eigenvalues found */
+
+  gsl_eigen_francis_workspace *francis_workspace_p;
+} gsl_eigen_nonsymm_workspace;
+
+gsl_eigen_nonsymm_workspace * gsl_eigen_nonsymm_alloc (const size_t n);
+void gsl_eigen_nonsymm_free (gsl_eigen_nonsymm_workspace * w);
+void gsl_eigen_nonsymm_params (const int compute_t, const int balance,
+                               gsl_eigen_nonsymm_workspace *w);
+int gsl_eigen_nonsymm (gsl_matrix * A, gsl_vector_complex * eval,
+                       gsl_eigen_nonsymm_workspace * w);
+int gsl_eigen_nonsymm_Z (gsl_matrix * A, gsl_vector_complex * eval,
+                         gsl_matrix * Z, gsl_eigen_nonsymm_workspace * w);
+
+typedef struct {
+  size_t size;                 /* size of matrices */
+  gsl_vector *work;            /* scratch workspace */
+  gsl_vector *work2;           /* scratch workspace */
+  gsl_vector *work3;           /* scratch workspace */
+
+  gsl_matrix *Z;               /* pointer to Schur vectors */
+
+  gsl_eigen_nonsymm_workspace *nonsymm_workspace_p;
+} gsl_eigen_nonsymmv_workspace;
+
+gsl_eigen_nonsymmv_workspace * gsl_eigen_nonsymmv_alloc (const size_t n);
+void gsl_eigen_nonsymmv_free (gsl_eigen_nonsymmv_workspace * w);
+void gsl_eigen_nonsymmv_params (const int balance,
+                                gsl_eigen_nonsymmv_workspace *w);
+int gsl_eigen_nonsymmv (gsl_matrix * A, gsl_vector_complex * eval,
+                        gsl_matrix_complex * evec,
+                        gsl_eigen_nonsymmv_workspace * w);
+int gsl_eigen_nonsymmv_Z (gsl_matrix * A, gsl_vector_complex * eval,
+                          gsl_matrix_complex * evec, gsl_matrix * Z,
+                          gsl_eigen_nonsymmv_workspace * w);
+
+typedef struct {
+  size_t size;            /* size of matrices */
+  gsl_eigen_symm_workspace *symm_workspace_p;
+} gsl_eigen_gensymm_workspace;
+
+gsl_eigen_gensymm_workspace * gsl_eigen_gensymm_alloc (const size_t n);
+void gsl_eigen_gensymm_free (gsl_eigen_gensymm_workspace * w);
+int gsl_eigen_gensymm (gsl_matrix * A, gsl_matrix * B,
+                       gsl_vector * eval, gsl_eigen_gensymm_workspace * w);
+int gsl_eigen_gensymm_standardize (gsl_matrix * A, const gsl_matrix * B);
+
+typedef struct {
+  size_t size;            /* size of matrices */
+  gsl_eigen_symmv_workspace *symmv_workspace_p;
+} gsl_eigen_gensymmv_workspace;
+
+gsl_eigen_gensymmv_workspace * gsl_eigen_gensymmv_alloc (const size_t n);
+void gsl_eigen_gensymmv_free (gsl_eigen_gensymmv_workspace * w);
+int gsl_eigen_gensymmv (gsl_matrix * A, gsl_matrix * B,
+                        gsl_vector * eval, gsl_matrix * evec,
+                        gsl_eigen_gensymmv_workspace * w);
+
+typedef struct {
+  size_t size;            /* size of matrices */
+  gsl_eigen_herm_workspace *herm_workspace_p;
+} gsl_eigen_genherm_workspace;
+
+gsl_eigen_genherm_workspace * gsl_eigen_genherm_alloc (const size_t n);
+void gsl_eigen_genherm_free (gsl_eigen_genherm_workspace * w);
+int gsl_eigen_genherm (gsl_matrix_complex * A, gsl_matrix_complex * B,
+                       gsl_vector * eval, gsl_eigen_genherm_workspace * w);
+int gsl_eigen_genherm_standardize (gsl_matrix_complex * A,
+                                   const gsl_matrix_complex * B);
+
+typedef struct {
+  size_t size;            /* size of matrices */
+  gsl_eigen_hermv_workspace *hermv_workspace_p;
+} gsl_eigen_genhermv_workspace;
+
+gsl_eigen_genhermv_workspace * gsl_eigen_genhermv_alloc (const size_t n);
+void gsl_eigen_genhermv_free (gsl_eigen_genhermv_workspace * w);
+int gsl_eigen_genhermv (gsl_matrix_complex * A, gsl_matrix_complex * B,
+                        gsl_vector * eval, gsl_matrix_complex * evec,
+                        gsl_eigen_genhermv_workspace * w);
+
+typedef struct {
+  size_t size;            /* size of matrices */
+  gsl_vector *work;       /* scratch workspace */
+
+  size_t n_evals;         /* number of eigenvalues found */
+  size_t max_iterations;  /* maximum QZ iterations allowed */
+  size_t n_iter;          /* number of iterations since last eigenvalue found */
+  double eshift;          /* exceptional shift counter */
+
+  int needtop;            /* need to compute top index? */
+
+  double atol;            /* tolerance for splitting A matrix */
+  double btol;            /* tolerance for splitting B matrix */
+
+  double ascale;          /* scaling factor for shifts */
+  double bscale;          /* scaling factor for shifts */
+
+  gsl_matrix *H;          /* pointer to hessenberg matrix */
+  gsl_matrix *R;          /* pointer to upper triangular matrix */
+
+  int compute_s;          /* compute generalized Schur form S */
+  int compute_t;          /* compute generalized Schur form T */
+
+  gsl_matrix *Q;          /* pointer to left Schur vectors */
+  gsl_matrix *Z;          /* pointer to right Schur vectors */
+} gsl_eigen_gen_workspace;
+
+gsl_eigen_gen_workspace * gsl_eigen_gen_alloc (const size_t n);
+void gsl_eigen_gen_free (gsl_eigen_gen_workspace * w);
+void gsl_eigen_gen_params (const int compute_s, const int compute_t,
+                           const int balance, gsl_eigen_gen_workspace * w);
+int gsl_eigen_gen (gsl_matrix * A, gsl_matrix * B,
+                   gsl_vector_complex * alpha, gsl_vector * beta,
+                   gsl_eigen_gen_workspace * w);
+int gsl_eigen_gen_QZ (gsl_matrix * A, gsl_matrix * B,
+                      gsl_vector_complex * alpha, gsl_vector * beta,
+                      gsl_matrix * Q, gsl_matrix * Z,
+                      gsl_eigen_gen_workspace * w);
+
+typedef struct {
+  size_t size;            /* size of matrices */
+
+  gsl_vector *work1;      /* 1-norm of columns of A */
+  gsl_vector *work2;      /* 1-norm of columns of B */
+  gsl_vector *work3;      /* real part of eigenvector */
+  gsl_vector *work4;      /* imag part of eigenvector */
+  gsl_vector *work5;      /* real part of back-transformed eigenvector */
+  gsl_vector *work6;      /* imag part of back-transformed eigenvector */
+
+  gsl_matrix *Q;          /* pointer to left Schur vectors */
+  gsl_matrix *Z;          /* pointer to right Schur vectors */
+
+  gsl_eigen_gen_workspace *gen_workspace_p;
+} gsl_eigen_genv_workspace;
+
+gsl_eigen_genv_workspace * gsl_eigen_genv_alloc (const size_t n);
+void gsl_eigen_genv_free (gsl_eigen_genv_workspace * w);
+int gsl_eigen_genv (gsl_matrix * A, gsl_matrix * B,
+                    gsl_vector_complex * alpha, gsl_vector * beta,
+                    gsl_matrix_complex * evec,
+                    gsl_eigen_genv_workspace * w);
+int gsl_eigen_genv_QZ (gsl_matrix * A, gsl_matrix * B,
+                       gsl_vector_complex * alpha, gsl_vector * beta,
+                       gsl_matrix_complex * evec,
+                       gsl_matrix * Q, gsl_matrix * Z,
+                       gsl_eigen_genv_workspace * w);
+
+
+
+typedef enum {
+  GSL_EIGEN_SORT_VAL_ASC,
+  GSL_EIGEN_SORT_VAL_DESC,
+  GSL_EIGEN_SORT_ABS_ASC,
+  GSL_EIGEN_SORT_ABS_DESC
+}
+gsl_eigen_sort_t;
+
+/* Sort eigensystem results based on eigenvalues.
+ * Sorts in order of increasing value or increasing
+ * absolute value.
+ *
+ * exceptions: GSL_EBADLEN
+ */
+
+int gsl_eigen_symmv_sort(gsl_vector * eval, gsl_matrix * evec,
+                         gsl_eigen_sort_t sort_type);
+
+int gsl_eigen_hermv_sort(gsl_vector * eval, gsl_matrix_complex * evec,
+                         gsl_eigen_sort_t sort_type);
+
+int gsl_eigen_nonsymmv_sort(gsl_vector_complex * eval,
+                            gsl_matrix_complex * evec,
+                            gsl_eigen_sort_t sort_type);
+
+int gsl_eigen_gensymmv_sort (gsl_vector * eval, gsl_matrix * evec, 
+                             gsl_eigen_sort_t sort_type);
+
+int gsl_eigen_genhermv_sort (gsl_vector * eval, gsl_matrix_complex * evec, 
+                             gsl_eigen_sort_t sort_type);
+
+int gsl_eigen_genv_sort (gsl_vector_complex * alpha, gsl_vector * beta,
+                         gsl_matrix_complex * evec,
+                         gsl_eigen_sort_t sort_type);
+
+/* Prototypes for the schur module */
+
+int gsl_schur_gen_eigvals(const gsl_matrix *A, const gsl_matrix *B,
+                          double *wr1, double *wr2, double *wi,
+                          double *scale1, double *scale2);
+
+int gsl_schur_solve_equation(double ca, const gsl_matrix *A, double z,
+                             double d1, double d2, const gsl_vector *b,
+                             gsl_vector *x, double *s, double *xnorm,
+                             double smin);
+
+int gsl_schur_solve_equation_z(double ca, const gsl_matrix *A,
+                               gsl_complex *z, double d1, double d2,
+                               const gsl_vector_complex *b,
+                               gsl_vector_complex *x, double *s,
+                               double *xnorm, double smin);
+
+
+/* The following functions are obsolete: */
+
+/* Eigensolve by Jacobi Method
+ *
+ * The data in the matrix input is destroyed.
+ *
+ * exceptions: 
+ */
+int
+gsl_eigen_jacobi(gsl_matrix * matrix,
+                      gsl_vector * eval,
+                      gsl_matrix * evec,
+                      unsigned int max_rot, 
+                      unsigned int * nrot);
+
+
+/* Invert by Jacobi Method
+ *
+ * exceptions: 
+ */
+int
+gsl_eigen_invert_jacobi(const gsl_matrix * matrix,
+                             gsl_matrix * ainv,
+                             unsigned int max_rot);
+
+
+
+__END_DECLS
+
+#endif /* __GSL_EIGEN_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_errno.h b/util/X86LINUX64/include/gsl/gsl_errno.h
new file mode 100644 (file)
index 0000000..b8e99b4
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_errno.h
@@ -0,0 +1,154 @@
+/* err/gsl_errno.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_ERRNO_H__
+#define __GSL_ERRNO_H__
+
+#include <stdio.h>
+#include <errno.h>
+#include <gsl/gsl_types.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+enum { 
+  GSL_SUCCESS  = 0, 
+  GSL_FAILURE  = -1,
+  GSL_CONTINUE = -2,  /* iteration has not converged */
+  GSL_EDOM     = 1,   /* input domain error, e.g sqrt(-1) */
+  GSL_ERANGE   = 2,   /* output range error, e.g. exp(1e100) */
+  GSL_EFAULT   = 3,   /* invalid pointer */
+  GSL_EINVAL   = 4,   /* invalid argument supplied by user */
+  GSL_EFAILED  = 5,   /* generic failure */
+  GSL_EFACTOR  = 6,   /* factorization failed */
+  GSL_ESANITY  = 7,   /* sanity check failed - shouldn't happen */
+  GSL_ENOMEM   = 8,   /* malloc failed */
+  GSL_EBADFUNC = 9,   /* problem with user-supplied function */
+  GSL_ERUNAWAY = 10,  /* iterative process is out of control */
+  GSL_EMAXITER = 11,  /* exceeded max number of iterations */
+  GSL_EZERODIV = 12,  /* tried to divide by zero */
+  GSL_EBADTOL  = 13,  /* user specified an invalid tolerance */
+  GSL_ETOL     = 14,  /* failed to reach the specified tolerance */
+  GSL_EUNDRFLW = 15,  /* underflow */
+  GSL_EOVRFLW  = 16,  /* overflow  */
+  GSL_ELOSS    = 17,  /* loss of accuracy */
+  GSL_EROUND   = 18,  /* failed because of roundoff error */
+  GSL_EBADLEN  = 19,  /* matrix, vector lengths are not conformant */
+  GSL_ENOTSQR  = 20,  /* matrix not square */
+  GSL_ESING    = 21,  /* apparent singularity detected */
+  GSL_EDIVERGE = 22,  /* integral or series is divergent */
+  GSL_EUNSUP   = 23,  /* requested feature is not supported by the hardware */
+  GSL_EUNIMPL  = 24,  /* requested feature not (yet) implemented */
+  GSL_ECACHE   = 25,  /* cache limit exceeded */
+  GSL_ETABLE   = 26,  /* table limit exceeded */
+  GSL_ENOPROG  = 27,  /* iteration is not making progress towards solution */
+  GSL_ENOPROGJ = 28,  /* jacobian evaluations are not improving the solution */
+  GSL_ETOLF    = 29,  /* cannot reach the specified tolerance in F */
+  GSL_ETOLX    = 30,  /* cannot reach the specified tolerance in X */
+  GSL_ETOLG    = 31,  /* cannot reach the specified tolerance in gradient */
+  GSL_EOF      = 32   /* end of file */
+} ;
+
+void gsl_error (const char * reason, const char * file, int line,
+                int gsl_errno);
+
+void gsl_stream_printf (const char *label, const char *file,
+                        int line, const char *reason);
+
+const char * gsl_strerror (const int gsl_errno);
+
+typedef void gsl_error_handler_t (const char * reason, const char * file,
+                                  int line, int gsl_errno);
+
+typedef void gsl_stream_handler_t (const char * label, const char * file,
+                                   int line, const char * reason);
+
+gsl_error_handler_t * 
+gsl_set_error_handler (gsl_error_handler_t * new_handler);
+
+gsl_error_handler_t *
+gsl_set_error_handler_off (void);
+
+gsl_stream_handler_t * 
+gsl_set_stream_handler (gsl_stream_handler_t * new_handler);
+
+FILE * gsl_set_stream (FILE * new_stream);
+
+/* GSL_ERROR: call the error handler, and return the error code */
+
+#define GSL_ERROR(reason, gsl_errno) \
+       do { \
+       gsl_error (reason, __FILE__, __LINE__, gsl_errno) ; \
+       return gsl_errno ; \
+       } while (0)
+
+/* GSL_ERROR_VAL: call the error handler, and return the given value */
+
+#define GSL_ERROR_VAL(reason, gsl_errno, value) \
+       do { \
+       gsl_error (reason, __FILE__, __LINE__, gsl_errno) ; \
+       return value ; \
+       } while (0)
+
+/* GSL_ERROR_VOID: call the error handler, and then return
+   (for void functions which still need to generate an error) */
+
+#define GSL_ERROR_VOID(reason, gsl_errno) \
+       do { \
+       gsl_error (reason, __FILE__, __LINE__, gsl_errno) ; \
+       return ; \
+       } while (0)
+
+/* GSL_ERROR_NULL suitable for out-of-memory conditions */
+
+#define GSL_ERROR_NULL(reason, gsl_errno) GSL_ERROR_VAL(reason, gsl_errno, 0)
+
+/* Sometimes you have several status results returned from
+ * function calls and you want to combine them in some sensible
+ * way. You cannot produce a "total" status condition, but you can
+ * pick one from a set of conditions based on an implied hierarchy.
+ *
+ * In other words:
+ *    you have: status_a, status_b, ...
+ *    you want: status = (status_a if it is bad, or status_b if it is bad,...)
+ *
+ * In this example you consider status_a to be more important and
+ * it is checked first, followed by the others in the order specified.
+ *
+ * Here are some dumb macros to do this.
+ */
+#define GSL_ERROR_SELECT_2(a,b)       ((a) != GSL_SUCCESS ? (a) : ((b) != GSL_SUCCESS ? (b) : GSL_SUCCESS))
+#define GSL_ERROR_SELECT_3(a,b,c)     ((a) != GSL_SUCCESS ? (a) : GSL_ERROR_SELECT_2(b,c))
+#define GSL_ERROR_SELECT_4(a,b,c,d)   ((a) != GSL_SUCCESS ? (a) : GSL_ERROR_SELECT_3(b,c,d))
+#define GSL_ERROR_SELECT_5(a,b,c,d,e) ((a) != GSL_SUCCESS ? (a) : GSL_ERROR_SELECT_4(b,c,d,e))
+
+#define GSL_STATUS_UPDATE(sp, s) do { if ((s) != GSL_SUCCESS) *(sp) = (s);} while(0)
+
+__END_DECLS
+
+#endif /* __GSL_ERRNO_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_fft.h b/util/X86LINUX64/include/gsl/gsl_fft.h
new file mode 100644 (file)
index 0000000..3578870
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_fft.h
@@ -0,0 +1,60 @@
+/* fft/gsl_fft.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_FFT_H__
+#define __GSL_FFT_H__
+
+#include <gsl/gsl_complex.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+#ifndef GSL_DISABLE_DEPRECATED
+typedef enum
+  {
+    forward = -1, backward = +1,
+    gsl_fft_forward = -1, gsl_fft_backward = +1      
+  }
+gsl_fft_direction;
+#else
+typedef enum
+  {
+    gsl_fft_forward = -1, gsl_fft_backward = +1   
+  }
+gsl_fft_direction;
+#endif
+
+/* this gives the sign in the formula
+
+   h(f) = \sum x(t) exp(+/- 2 pi i f t) 
+       
+   where - is the forward transform direction and + the inverse direction */
+
+__END_DECLS
+
+#endif /* __GSL_FFT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_fft_complex.h b/util/X86LINUX64/include/gsl/gsl_fft_complex.h
new file mode 100644 (file)
index 0000000..c13f7ea
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_fft_complex.h
@@ -0,0 +1,136 @@
+/* fft/gsl_fft_complex.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_FFT_COMPLEX_H__
+#define __GSL_FFT_COMPLEX_H__
+
+#include <stddef.h>
+
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_fft.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/*  Power of 2 routines  */
+
+
+int gsl_fft_complex_radix2_forward (gsl_complex_packed_array data,
+                                    const size_t stride,
+                                    const size_t n);
+
+int gsl_fft_complex_radix2_backward (gsl_complex_packed_array data,
+                                     const size_t stride,
+                                     const size_t n);
+
+int gsl_fft_complex_radix2_inverse (gsl_complex_packed_array data,
+                                    const size_t stride,
+                                    const size_t n);
+
+int gsl_fft_complex_radix2_transform (gsl_complex_packed_array data,
+                                      const size_t stride,
+                                      const size_t n,
+                                      const gsl_fft_direction sign);
+
+int gsl_fft_complex_radix2_dif_forward (gsl_complex_packed_array data,
+                                        const size_t stride,
+                                        const size_t n);
+
+int gsl_fft_complex_radix2_dif_backward (gsl_complex_packed_array data,
+                                         const size_t stride,
+                                         const size_t n);
+
+int gsl_fft_complex_radix2_dif_inverse (gsl_complex_packed_array data,
+                                        const size_t stride,
+                                        const size_t n);
+
+int gsl_fft_complex_radix2_dif_transform (gsl_complex_packed_array data,
+                                          const size_t stride,
+                                          const size_t n,
+                                          const gsl_fft_direction sign);
+
+/*  Mixed Radix general-N routines  */
+
+typedef struct
+  {
+    size_t n;
+    size_t nf;
+    size_t factor[64];
+    gsl_complex *twiddle[64];
+    gsl_complex *trig;
+  }
+gsl_fft_complex_wavetable;
+
+typedef struct
+{
+  size_t n;
+  double *scratch;
+}
+gsl_fft_complex_workspace;
+
+
+gsl_fft_complex_wavetable *gsl_fft_complex_wavetable_alloc (size_t n);
+
+void gsl_fft_complex_wavetable_free (gsl_fft_complex_wavetable * wavetable);
+
+gsl_fft_complex_workspace *gsl_fft_complex_workspace_alloc (size_t n);
+
+void gsl_fft_complex_workspace_free (gsl_fft_complex_workspace * workspace);
+
+int gsl_fft_complex_memcpy (gsl_fft_complex_wavetable * dest,
+                            gsl_fft_complex_wavetable * src);
+
+
+int gsl_fft_complex_forward (gsl_complex_packed_array data,
+                             const size_t stride,
+                             const size_t n,
+                             const gsl_fft_complex_wavetable * wavetable,
+                             gsl_fft_complex_workspace * work);
+
+int gsl_fft_complex_backward (gsl_complex_packed_array data,
+                              const size_t stride,
+                              const size_t n,
+                              const gsl_fft_complex_wavetable * wavetable,
+                              gsl_fft_complex_workspace * work);
+
+int gsl_fft_complex_inverse (gsl_complex_packed_array data,
+                             const size_t stride,
+                             const size_t n,
+                             const gsl_fft_complex_wavetable * wavetable,
+                             gsl_fft_complex_workspace * work);
+
+int gsl_fft_complex_transform (gsl_complex_packed_array data,
+                               const size_t stride, const size_t n,
+                               const gsl_fft_complex_wavetable * wavetable,
+                               gsl_fft_complex_workspace * work,
+                               const gsl_fft_direction sign);
+
+__END_DECLS
+
+#endif /* __GSL_FFT_COMPLEX_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_fft_complex_float.h b/util/X86LINUX64/include/gsl/gsl_fft_complex_float.h
new file mode 100644 (file)
index 0000000..d3ff395
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_fft_complex_float.h
@@ -0,0 +1,139 @@
+/* fft/gsl_fft_complex_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_FFT_COMPLEX_FLOAT_H__
+#define __GSL_FFT_COMPLEX_FLOAT_H__
+
+#include <stddef.h>
+
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_fft.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/*  Power of 2 routines  */
+
+
+int gsl_fft_complex_float_radix2_forward (gsl_complex_packed_array_float data,
+                                          const size_t stride,
+                                          const size_t n);
+
+int gsl_fft_complex_float_radix2_backward (gsl_complex_packed_array_float data,
+                                           const size_t stride,
+                                           const size_t n);
+
+int gsl_fft_complex_float_radix2_inverse (gsl_complex_packed_array_float data,
+                                          const size_t stride,
+                                          const size_t n);
+
+int gsl_fft_complex_float_radix2_transform (gsl_complex_packed_array_float data,
+                                            const size_t stride,
+                                            const size_t n,
+                                            const gsl_fft_direction sign);
+
+int gsl_fft_complex_float_radix2_dif_forward (gsl_complex_packed_array_float data,
+                                              const size_t stride,
+                                              const size_t n);
+
+int gsl_fft_complex_float_radix2_dif_backward (gsl_complex_packed_array_float data,
+                                               const size_t stride,
+                                               const size_t n);
+
+int gsl_fft_complex_float_radix2_dif_inverse (gsl_complex_packed_array_float data,
+                                              const size_t stride,
+                                              const size_t n);
+
+int gsl_fft_complex_float_radix2_dif_transform (gsl_complex_packed_array_float data,
+                                                const size_t stride,
+                                                const size_t n,
+                                                const gsl_fft_direction sign);
+
+/*  Mixed Radix general-N routines  */
+
+typedef struct
+  {
+    size_t n;
+    size_t nf;
+    size_t factor[64];
+    gsl_complex_float *twiddle[64];
+    gsl_complex_float *trig;
+  }
+gsl_fft_complex_wavetable_float;
+
+typedef struct
+{
+    size_t n;
+    float *scratch;
+}
+gsl_fft_complex_workspace_float;
+
+
+gsl_fft_complex_wavetable_float *gsl_fft_complex_wavetable_float_alloc (size_t n);
+
+void gsl_fft_complex_wavetable_float_free (gsl_fft_complex_wavetable_float * wavetable);
+
+gsl_fft_complex_workspace_float *gsl_fft_complex_workspace_float_alloc (size_t n);
+
+void gsl_fft_complex_workspace_float_free (gsl_fft_complex_workspace_float * workspace);
+
+
+int gsl_fft_complex_float_memcpy (gsl_fft_complex_wavetable_float * dest,
+                               gsl_fft_complex_wavetable_float * src);
+
+
+int gsl_fft_complex_float_forward (gsl_complex_packed_array_float data,
+                                   const size_t stride,
+                                   const size_t n,
+                                   const gsl_fft_complex_wavetable_float * wavetable,
+                                   gsl_fft_complex_workspace_float * work);
+
+int gsl_fft_complex_float_backward (gsl_complex_packed_array_float data,
+                                    const size_t stride,
+                                    const size_t n,
+                                    const gsl_fft_complex_wavetable_float * wavetable,
+                                    gsl_fft_complex_workspace_float * work);
+
+int gsl_fft_complex_float_inverse (gsl_complex_packed_array_float data,
+                                   const size_t stride,
+                                   const size_t n,
+                                   const gsl_fft_complex_wavetable_float * wavetable,
+                                   gsl_fft_complex_workspace_float * work);
+
+int gsl_fft_complex_float_transform (gsl_complex_packed_array_float data,
+                                     const size_t stride, const size_t n,
+                                     const gsl_fft_complex_wavetable_float * wavetable,
+                                     gsl_fft_complex_workspace_float * work,
+                                     const gsl_fft_direction sign);
+
+__END_DECLS
+
+#endif /* __GSL_FFT_COMPLEX_FLOAT_H__ */
+
+

diff --git a/util/X86LINUX64/include/gsl/gsl_fft_halfcomplex.h b/util/X86LINUX64/include/gsl/gsl_fft_halfcomplex.h
new file mode 100644 (file)
index 0000000..6751e47
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_fft_halfcomplex.h
@@ -0,0 +1,86 @@
+/* fft/gsl_fft_halfcomplex.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_FFT_HALFCOMPLEX_H__
+#define __GSL_FFT_HALFCOMPLEX_H__
+
+#include <stddef.h>
+
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_fft.h>
+#include <gsl/gsl_fft_real.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_fft_halfcomplex_radix2_backward (double data[], const size_t stride, const size_t n);
+int gsl_fft_halfcomplex_radix2_inverse (double data[], const size_t stride, const size_t n);
+int gsl_fft_halfcomplex_radix2_transform (double data[], const size_t stride, const size_t n);
+
+typedef struct
+  {
+    size_t n;
+    size_t nf;
+    size_t factor[64];
+    gsl_complex *twiddle[64];
+    gsl_complex *trig;
+  }
+gsl_fft_halfcomplex_wavetable;
+
+gsl_fft_halfcomplex_wavetable * gsl_fft_halfcomplex_wavetable_alloc (size_t n);
+
+void
+gsl_fft_halfcomplex_wavetable_free (gsl_fft_halfcomplex_wavetable * wavetable);
+
+
+int gsl_fft_halfcomplex_backward (double data[], const size_t stride, const size_t n,
+                                  const gsl_fft_halfcomplex_wavetable * wavetable,
+                                  gsl_fft_real_workspace * work);
+
+int gsl_fft_halfcomplex_inverse (double data[], const size_t stride, const size_t n,
+                                 const gsl_fft_halfcomplex_wavetable * wavetable,
+                                 gsl_fft_real_workspace * work);
+
+int gsl_fft_halfcomplex_transform (double data[], const size_t stride, const size_t n,
+                                   const gsl_fft_halfcomplex_wavetable * wavetable,
+                                   gsl_fft_real_workspace * work);
+
+int
+gsl_fft_halfcomplex_unpack (const double halfcomplex_coefficient[],
+                            double complex_coefficient[],
+                            const size_t stride, const size_t n);
+
+int
+gsl_fft_halfcomplex_radix2_unpack (const double halfcomplex_coefficient[],
+                                   double complex_coefficient[],
+                                   const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_FFT_HALFCOMPLEX_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_fft_halfcomplex_float.h b/util/X86LINUX64/include/gsl/gsl_fft_halfcomplex_float.h
new file mode 100644 (file)
index 0000000..e318367
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_fft_halfcomplex_float.h
@@ -0,0 +1,86 @@
+/* fft/gsl_fft_halfcomplex_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_FFT_HALFCOMPLEX_FLOAT_H__
+#define __GSL_FFT_HALFCOMPLEX_FLOAT_H__
+
+#include <stddef.h>
+
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_fft.h>
+#include <gsl/gsl_fft_real_float.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_fft_halfcomplex_float_radix2_backward (float data[], const size_t stride, const size_t n);
+int gsl_fft_halfcomplex_float_radix2_inverse (float data[], const size_t stride, const size_t n);
+int gsl_fft_halfcomplex_float_radix2_transform (float data[], const size_t stride, const size_t n);
+
+typedef struct
+  {
+    size_t n;
+    size_t nf;
+    size_t factor[64];
+    gsl_complex_float *twiddle[64];
+    gsl_complex_float *trig;
+  }
+gsl_fft_halfcomplex_wavetable_float;
+
+
+gsl_fft_halfcomplex_wavetable_float * gsl_fft_halfcomplex_wavetable_float_alloc (size_t n);
+
+void
+gsl_fft_halfcomplex_wavetable_float_free (gsl_fft_halfcomplex_wavetable_float * wavetable);
+
+int gsl_fft_halfcomplex_float_backward (float data[], const size_t stride, const size_t n,
+                                        const gsl_fft_halfcomplex_wavetable_float * wavetable,
+                                        gsl_fft_real_workspace_float * work);
+
+int gsl_fft_halfcomplex_float_inverse (float data[], const size_t stride, const size_t n,
+                                       const gsl_fft_halfcomplex_wavetable_float * wavetable,
+                                       gsl_fft_real_workspace_float * work);
+
+int gsl_fft_halfcomplex_float_transform (float data[], const size_t stride, const size_t n,
+                                         const gsl_fft_halfcomplex_wavetable_float * wavetable,
+                                         gsl_fft_real_workspace_float * work);
+
+int
+gsl_fft_halfcomplex_float_unpack (const float halfcomplex_coefficient[],
+                                  float complex_coefficient[],
+                                  const size_t stride, const size_t n);
+
+int
+gsl_fft_halfcomplex_float_radix2_unpack (const float halfcomplex_coefficient[],
+                                         float complex_coefficient[],
+                                         const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_FFT_HALFCOMPLEX_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_fft_real.h b/util/X86LINUX64/include/gsl/gsl_fft_real.h
new file mode 100644 (file)
index 0000000..e07a604
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_fft_real.h
@@ -0,0 +1,80 @@
+/* fft/gsl_fft_real.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_FFT_REAL_H__
+#define __GSL_FFT_REAL_H__
+
+#include <stddef.h>
+
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_fft.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_fft_real_radix2_transform (double data[], const size_t stride, const size_t n) ;
+
+typedef struct
+  {
+    size_t n;
+    size_t nf;
+    size_t factor[64];
+    gsl_complex *twiddle[64];
+    gsl_complex *trig;
+  }
+gsl_fft_real_wavetable;
+
+typedef struct
+  {
+    size_t n;
+    double *scratch;
+  }
+gsl_fft_real_workspace;
+
+gsl_fft_real_wavetable * gsl_fft_real_wavetable_alloc (size_t n);
+
+void  gsl_fft_real_wavetable_free (gsl_fft_real_wavetable * wavetable);
+
+gsl_fft_real_workspace * gsl_fft_real_workspace_alloc (size_t n);
+
+void  gsl_fft_real_workspace_free (gsl_fft_real_workspace * workspace);
+
+
+int gsl_fft_real_transform (double data[], const size_t stride, const size_t n,
+                            const gsl_fft_real_wavetable * wavetable,
+                            gsl_fft_real_workspace * work);
+
+
+int gsl_fft_real_unpack (const double real_coefficient[],
+                         double complex_coefficient[],
+                         const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_FFT_REAL_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_fft_real_float.h b/util/X86LINUX64/include/gsl/gsl_fft_real_float.h
new file mode 100644 (file)
index 0000000..7a7732f
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_fft_real_float.h
@@ -0,0 +1,79 @@
+/* fft/gsl_fft_real_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_FFT_REAL_FLOAT_H__
+#define __GSL_FFT_REAL_FLOAT_H__
+
+#include <stddef.h>
+
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_fft.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_fft_real_float_radix2_transform (float data[], const size_t stride, const size_t n) ;
+
+typedef struct
+  {
+    size_t n;
+    size_t nf;
+    size_t factor[64];
+    gsl_complex_float *twiddle[64];
+    gsl_complex_float *trig;
+  }
+gsl_fft_real_wavetable_float;
+
+typedef struct
+  {
+    size_t n;
+    float *scratch;
+  }
+gsl_fft_real_workspace_float;
+
+gsl_fft_real_wavetable_float * gsl_fft_real_wavetable_float_alloc (size_t n);
+
+void  gsl_fft_real_wavetable_float_free (gsl_fft_real_wavetable_float * wavetable);
+
+gsl_fft_real_workspace_float * gsl_fft_real_workspace_float_alloc (size_t n);
+
+void  gsl_fft_real_workspace_float_free (gsl_fft_real_workspace_float * workspace);
+
+int gsl_fft_real_float_transform (float data[], const size_t stride, const size_t n,
+                                  const gsl_fft_real_wavetable_float * wavetable,
+                                  gsl_fft_real_workspace_float * work);
+
+
+int gsl_fft_real_float_unpack (const float real_float_coefficient[],
+                               float complex_coefficient[],
+                               const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_FFT_REAL_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_fit.h b/util/X86LINUX64/include/gsl/gsl_fit.h
new file mode 100644 (file)
index 0000000..de83a41
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_fit.h
@@ -0,0 +1,85 @@
+/* fit/gsl_fit.h
+ * 
+ * Copyright (C) 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_FIT_H__
+#define __GSL_FIT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_math.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_fit_linear (const double * x, const size_t xstride,
+                    const double * y, const size_t ystride,
+                    const size_t n,
+                    double * c0, double * c1, 
+                    double * cov00, double * cov01, double * cov11, 
+                    double * sumsq);
+
+
+int gsl_fit_wlinear (const double * x, const size_t xstride,
+                     const double * w, const size_t wstride,
+                     const double * y, const size_t ystride,
+                     const size_t n,
+                     double * c0, double * c1, 
+                     double * cov00, double * cov01, double * cov11, 
+                     double * chisq);
+
+int
+gsl_fit_linear_est (const double x, 
+                    const double c0, const double c1, 
+                    const double cov00, const double cov01, const double cov11,
+                    double *y, double *y_err);
+
+
+int gsl_fit_mul (const double * x, const size_t xstride,
+                 const double * y, const size_t ystride,
+                 const size_t n,
+                 double * c1, 
+                 double * cov11, 
+                 double * sumsq);
+
+int gsl_fit_wmul (const double * x, const size_t xstride,
+                  const double * w, const size_t wstride,
+                  const double * y, const size_t ystride,
+                  const size_t n,
+                  double * c1, 
+                  double * cov11, 
+                  double * sumsq);
+
+
+int
+gsl_fit_mul_est (const double x, 
+                 const double c1, 
+                 const double cov11,
+                 double *y, double *y_err);
+
+__END_DECLS
+
+#endif /* __GSL_FIT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_heapsort.h b/util/X86LINUX64/include/gsl/gsl_heapsort.h
new file mode 100644 (file)
index 0000000..213fae1
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_heapsort.h
@@ -0,0 +1,44 @@
+/* sort/gsl_heapsort.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_HEAPSORT_H__
+#define __GSL_HEAPSORT_H__
+
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef int (*gsl_comparison_fn_t) (const void *, const void *);
+
+void gsl_heapsort (void * array, size_t count, size_t size, gsl_comparison_fn_t compare);
+int gsl_heapsort_index (size_t * p, const void * array, size_t count, size_t size, gsl_comparison_fn_t compare);
+
+__END_DECLS
+
+#endif /* __GSL_HEAPSORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_histogram.h b/util/X86LINUX64/include/gsl/gsl_histogram.h
new file mode 100644 (file)
index 0000000..e8375c6
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_histogram.h
@@ -0,0 +1,134 @@
+/* histogram/gsl_histogram.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_HISTOGRAM_H__
+#define __GSL_HISTOGRAM_H__
+
+#include <stdlib.h>
+#include <stdio.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct {
+  size_t n ;
+  double * range ;
+  double * bin ;
+} gsl_histogram ;
+
+typedef struct {
+  size_t n ;
+  double * range ;
+  double * sum ;
+} gsl_histogram_pdf ;
+
+gsl_histogram * gsl_histogram_alloc (size_t n);
+
+gsl_histogram * gsl_histogram_calloc (size_t n);
+gsl_histogram * gsl_histogram_calloc_uniform (const size_t n, const double xmin, const double xmax);
+void gsl_histogram_free (gsl_histogram * h);
+int gsl_histogram_increment (gsl_histogram * h, double x);
+int gsl_histogram_accumulate (gsl_histogram * h, double x, double weight);
+int gsl_histogram_find (const gsl_histogram * h, 
+                        const double x, size_t * i);
+
+double gsl_histogram_get (const gsl_histogram * h, size_t i);
+int gsl_histogram_get_range (const gsl_histogram * h, size_t i, 
+                             double * lower, double * upper);
+                                     
+double gsl_histogram_max (const gsl_histogram * h);
+double gsl_histogram_min (const gsl_histogram * h);
+size_t gsl_histogram_bins (const gsl_histogram * h);
+
+void gsl_histogram_reset (gsl_histogram * h);
+
+gsl_histogram * gsl_histogram_calloc_range(size_t n, double * range);
+
+int 
+gsl_histogram_set_ranges (gsl_histogram * h, const double range[], size_t size);
+int 
+gsl_histogram_set_ranges_uniform (gsl_histogram * h, double xmin, double xmax);
+
+
+
+int
+gsl_histogram_memcpy(gsl_histogram * dest, const gsl_histogram * source);
+
+gsl_histogram *
+gsl_histogram_clone(const gsl_histogram * source);
+
+double gsl_histogram_max_val (const gsl_histogram * h);
+
+size_t gsl_histogram_max_bin (const gsl_histogram * h);
+
+double gsl_histogram_min_val (const gsl_histogram * h);
+
+size_t gsl_histogram_min_bin (const gsl_histogram * h);
+
+int 
+gsl_histogram_equal_bins_p(const gsl_histogram *h1, const gsl_histogram *h2);
+
+int 
+gsl_histogram_add(gsl_histogram *h1, const gsl_histogram *h2);
+
+int 
+gsl_histogram_sub(gsl_histogram *h1, const gsl_histogram *h2);
+
+int 
+gsl_histogram_mul(gsl_histogram *h1, const gsl_histogram *h2);
+ 
+int 
+gsl_histogram_div(gsl_histogram *h1, const gsl_histogram *h2);
+
+int 
+gsl_histogram_scale(gsl_histogram *h, double scale);
+
+int 
+gsl_histogram_shift (gsl_histogram * h, double shift);
+
+
+double gsl_histogram_sigma (const gsl_histogram * h);
+
+double gsl_histogram_mean (const gsl_histogram * h);
+
+double gsl_histogram_sum (const gsl_histogram * h);
+
+int gsl_histogram_fwrite (FILE * stream, const gsl_histogram * h) ;
+int gsl_histogram_fread (FILE * stream, gsl_histogram * h);
+int gsl_histogram_fprintf (FILE * stream, const gsl_histogram * h, 
+                           const char * range_format, const char * bin_format);
+int gsl_histogram_fscanf (FILE * stream, gsl_histogram * h);
+
+gsl_histogram_pdf * gsl_histogram_pdf_alloc (const size_t n);
+int gsl_histogram_pdf_init (gsl_histogram_pdf * p, const gsl_histogram * h);
+void gsl_histogram_pdf_free (gsl_histogram_pdf * p);
+double gsl_histogram_pdf_sample (const gsl_histogram_pdf * p, double r);
+
+__END_DECLS
+
+#endif /* __GSL_HISTOGRAM_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_histogram2d.h b/util/X86LINUX64/include/gsl/gsl_histogram2d.h
new file mode 100644 (file)
index 0000000..90065ac
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_histogram2d.h
@@ -0,0 +1,172 @@
+/* histogram/gsl_histogram2d.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_HISTOGRAM2D_H__
+#define __GSL_HISTOGRAM2D_H__
+
+#include <stdlib.h>
+#include <stdio.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct {
+  size_t nx, ny ;
+  double * xrange ;
+  double * yrange ;
+  double * bin ;
+} gsl_histogram2d ;
+
+typedef struct {
+  size_t nx, ny ;
+  double * xrange ;
+  double * yrange ;
+  double * sum ;
+} gsl_histogram2d_pdf ;
+
+gsl_histogram2d * gsl_histogram2d_alloc (const size_t nx, const size_t ny);
+gsl_histogram2d * gsl_histogram2d_calloc (const size_t nx, const size_t ny);
+gsl_histogram2d * gsl_histogram2d_calloc_uniform (const size_t nx, const size_t ny,
+                                             const double xmin, const double xmax,
+                                             const double ymin, const double ymax);
+
+void gsl_histogram2d_free (gsl_histogram2d * h);
+
+int gsl_histogram2d_increment (gsl_histogram2d * h, double x, double y);
+int gsl_histogram2d_accumulate (gsl_histogram2d * h, 
+                                double x, double y, double weight);
+int gsl_histogram2d_find (const gsl_histogram2d * h, 
+                          const double x, const double y, size_t * i, size_t * j);
+
+double gsl_histogram2d_get (const gsl_histogram2d * h, const size_t i, const size_t j);
+int gsl_histogram2d_get_xrange (const gsl_histogram2d * h, const size_t i,
+                                double * xlower, double * xupper);
+int gsl_histogram2d_get_yrange (const gsl_histogram2d * h, const size_t j,
+                                double * ylower, double * yupper);
+
+                                     
+double gsl_histogram2d_xmax (const gsl_histogram2d * h);
+double gsl_histogram2d_xmin (const gsl_histogram2d * h);
+size_t gsl_histogram2d_nx (const gsl_histogram2d * h);
+
+double gsl_histogram2d_ymax (const gsl_histogram2d * h);
+double gsl_histogram2d_ymin (const gsl_histogram2d * h);
+size_t gsl_histogram2d_ny (const gsl_histogram2d * h);
+
+void gsl_histogram2d_reset (gsl_histogram2d * h);
+
+gsl_histogram2d * 
+gsl_histogram2d_calloc_range(size_t nx, size_t ny, 
+                             double *xrange, double *yrange);
+
+int 
+gsl_histogram2d_set_ranges_uniform (gsl_histogram2d * h, 
+                                    double xmin, double xmax,
+                                    double ymin, double ymax);
+
+int 
+gsl_histogram2d_set_ranges (gsl_histogram2d * h, 
+                            const double xrange[], size_t xsize,
+                            const double yrange[], size_t ysize);
+
+int 
+gsl_histogram2d_memcpy(gsl_histogram2d *dest, const gsl_histogram2d *source);
+
+gsl_histogram2d *
+gsl_histogram2d_clone(const gsl_histogram2d * source);
+
+double
+gsl_histogram2d_max_val(const gsl_histogram2d *h);
+
+void
+gsl_histogram2d_max_bin (const gsl_histogram2d *h, size_t *i, size_t *j);
+
+double
+gsl_histogram2d_min_val(const gsl_histogram2d *h);
+
+void
+gsl_histogram2d_min_bin (const gsl_histogram2d *h, size_t *i, size_t *j);
+
+double
+gsl_histogram2d_xmean (const gsl_histogram2d * h);
+
+double
+gsl_histogram2d_ymean (const gsl_histogram2d * h);
+
+double
+gsl_histogram2d_xsigma (const gsl_histogram2d * h);
+
+double
+gsl_histogram2d_ysigma (const gsl_histogram2d * h);
+
+double
+gsl_histogram2d_cov (const gsl_histogram2d * h);
+
+double
+gsl_histogram2d_sum (const gsl_histogram2d *h);
+
+int 
+gsl_histogram2d_equal_bins_p(const gsl_histogram2d *h1,
+                             const gsl_histogram2d *h2) ;
+
+int
+gsl_histogram2d_add(gsl_histogram2d *h1, const gsl_histogram2d *h2);
+
+int
+gsl_histogram2d_sub(gsl_histogram2d *h1, const gsl_histogram2d *h2);
+
+int
+gsl_histogram2d_mul(gsl_histogram2d *h1, const gsl_histogram2d *h2);
+
+int
+gsl_histogram2d_div(gsl_histogram2d *h1, const gsl_histogram2d *h2);
+
+int
+gsl_histogram2d_scale(gsl_histogram2d *h, double scale);
+
+int
+gsl_histogram2d_shift(gsl_histogram2d *h, double shift);
+
+int gsl_histogram2d_fwrite (FILE * stream, const gsl_histogram2d * h) ;
+int gsl_histogram2d_fread (FILE * stream, gsl_histogram2d * h);
+int gsl_histogram2d_fprintf (FILE * stream, const gsl_histogram2d * h, 
+                             const char * range_format,
+                             const char * bin_format);
+int gsl_histogram2d_fscanf (FILE * stream, gsl_histogram2d * h);
+
+gsl_histogram2d_pdf * gsl_histogram2d_pdf_alloc (const size_t nx, const size_t ny);
+int gsl_histogram2d_pdf_init (gsl_histogram2d_pdf * p, const gsl_histogram2d * h);
+void gsl_histogram2d_pdf_free (gsl_histogram2d_pdf * p);
+int gsl_histogram2d_pdf_sample (const gsl_histogram2d_pdf * p, 
+                                   double r1, double r2, 
+                                   double * x, double * y);
+
+__END_DECLS
+
+#endif /* __GSL_HISTOGRAM2D_H__ */
+

diff --git a/util/X86LINUX64/include/gsl/gsl_ieee_utils.h b/util/X86LINUX64/include/gsl/gsl_ieee_utils.h
new file mode 100644 (file)
index 0000000..a961220
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_ieee_utils.h
@@ -0,0 +1,99 @@
+/* ieee-utils/gsl_ieee_utils.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_IEEE_UTILS_H__
+#define __GSL_IEEE_UTILS_H__
+#include <stdio.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+enum {
+  GSL_IEEE_TYPE_NAN = 1,
+  GSL_IEEE_TYPE_INF = 2,
+  GSL_IEEE_TYPE_NORMAL = 3,
+  GSL_IEEE_TYPE_DENORMAL = 4,
+  GSL_IEEE_TYPE_ZERO = 5
+} ;
+
+typedef struct  {
+  int sign ;
+  char mantissa[24] ; /* Actual bits are 0..22, element 23 is \0 */
+  int exponent ;
+  int type ;
+} gsl_ieee_float_rep ;
+
+typedef struct  {
+  int sign ;
+  char mantissa[53] ; /* Actual bits are 0..51, element 52 is \0 */
+  int exponent ;
+  int type ;
+} gsl_ieee_double_rep ;
+
+
+void gsl_ieee_printf_float (const float * x) ;
+void gsl_ieee_printf_double (const double * x) ;
+
+void gsl_ieee_fprintf_float (FILE * stream, const float * x) ;
+void gsl_ieee_fprintf_double (FILE * stream, const double * x) ;
+
+void gsl_ieee_float_to_rep (const float * x, gsl_ieee_float_rep * r) ;
+void gsl_ieee_double_to_rep (const double * x, gsl_ieee_double_rep * r) ;
+
+enum {
+  GSL_IEEE_SINGLE_PRECISION = 1,
+  GSL_IEEE_DOUBLE_PRECISION = 2,
+  GSL_IEEE_EXTENDED_PRECISION = 3
+} ;
+
+enum {
+  GSL_IEEE_ROUND_TO_NEAREST = 1,
+  GSL_IEEE_ROUND_DOWN = 2,
+  GSL_IEEE_ROUND_UP = 3,
+  GSL_IEEE_ROUND_TO_ZERO = 4
+} ;
+
+enum {
+  GSL_IEEE_MASK_INVALID = 1,
+  GSL_IEEE_MASK_DENORMALIZED = 2,
+  GSL_IEEE_MASK_DIVISION_BY_ZERO = 4,
+  GSL_IEEE_MASK_OVERFLOW = 8,
+  GSL_IEEE_MASK_UNDERFLOW = 16,
+  GSL_IEEE_MASK_ALL = 31,
+  GSL_IEEE_TRAP_INEXACT = 32
+} ;
+
+void gsl_ieee_env_setup (void) ;
+int gsl_ieee_read_mode_string (const char * description, int * precision,
+                               int * rounding, int * exception_mask) ;
+int gsl_ieee_set_mode (int precision, int rounding, int exception_mask) ;
+
+__END_DECLS
+
+#endif /* __GSL_IEEE_UTILS_H__ */
+

diff --git a/util/X86LINUX64/include/gsl/gsl_inline.h b/util/X86LINUX64/include/gsl/gsl_inline.h
new file mode 100644 (file)
index 0000000..2172201
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_inline.h
@@ -0,0 +1,67 @@
+/* gsl_inline.h
+ * 
+ * Copyright (C) 2008, 2009 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_INLINE_H__
+#define __GSL_INLINE_H__
+
+/* In recent versiions of GCC, the inline keyword has two different
+   forms: GNU and C99.
+
+   In GNU mode we can use 'extern inline' to make inline functions
+   work like macros.  The function is only inlined--it is never output
+   as a definition in an object file.
+
+   In the new C99 mode 'extern inline' has a different meaning--it
+   causes the definition of the function to be output in each object
+   file where it is used.  This will result in multiple-definition
+   errors on linking.  The 'inline' keyword on its own (without
+   extern) has the same behavior as the original GNU 'extern inline'.
+
+   The C99 style is the default with -std=c99 in GCC 4.3.  
+
+   This header file allows either form of inline to be used by
+   redefining the macros INLINE_DECL and INLINE_FUN.  These are used
+   in the public header files as
+
+        INLINE_DECL double gsl_foo (double x);
+       #ifdef HAVE_INLINE
+       INLINE_FUN double gsl_foo (double x) { return x+1.0; } ;
+        #endif
+   
+*/
+
+#ifdef HAVE_INLINE
+#  if defined(__GNUC_STDC_INLINE__) || defined(GSL_C99_INLINE) || defined(HAVE_C99_INLINE)
+#    define INLINE_DECL inline  /* use C99 inline */
+#    define INLINE_FUN inline
+#  else
+#    define INLINE_DECL         /* use GNU extern inline */
+#    define INLINE_FUN extern inline
+#  endif
+#else
+#  define INLINE_DECL /* */
+#endif
+
+/* Range checking conditions in headers do not require any run-time
+   tests of the global variable gsl_check_range.  They are enabled or
+   disabled in user code at compile time with GSL_RANGE_CHECK macro.
+   See also build.h. */
+#define GSL_RANGE_COND(x) (x)
+
+#endif /* __GSL_INLINE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_integration.h b/util/X86LINUX64/include/gsl/gsl_integration.h
new file mode 100644 (file)
index 0000000..5972f49
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_integration.h
@@ -0,0 +1,323 @@
+/* integration/gsl_integration.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_INTEGRATION_H__
+#define __GSL_INTEGRATION_H__
+#include <stdlib.h>
+#include <gsl/gsl_math.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/* Workspace for adaptive integrators */
+
+typedef struct
+  {
+    size_t limit;
+    size_t size;
+    size_t nrmax;
+    size_t i;
+    size_t maximum_level;
+    double *alist;
+    double *blist;
+    double *rlist;
+    double *elist;
+    size_t *order;
+    size_t *level;
+  }
+gsl_integration_workspace;
+
+gsl_integration_workspace *
+  gsl_integration_workspace_alloc (const size_t n);
+
+void
+  gsl_integration_workspace_free (gsl_integration_workspace * w);
+
+
+/* Workspace for QAWS integrator */
+
+typedef struct
+{
+  double alpha;
+  double beta;
+  int mu;
+  int nu;
+  double ri[25];
+  double rj[25];
+  double rg[25];
+  double rh[25];
+}
+gsl_integration_qaws_table;
+
+gsl_integration_qaws_table * 
+gsl_integration_qaws_table_alloc (double alpha, double beta, int mu, int nu);
+
+int
+gsl_integration_qaws_table_set (gsl_integration_qaws_table * t,
+                                double alpha, double beta, int mu, int nu);
+
+void
+gsl_integration_qaws_table_free (gsl_integration_qaws_table * t);
+
+/* Workspace for QAWO integrator */
+
+enum gsl_integration_qawo_enum { GSL_INTEG_COSINE, GSL_INTEG_SINE };
+
+typedef struct
+{
+  size_t n;
+  double omega;
+  double L;
+  double par;
+  enum gsl_integration_qawo_enum sine;
+  double *chebmo;
+}
+gsl_integration_qawo_table;
+
+gsl_integration_qawo_table * 
+gsl_integration_qawo_table_alloc (double omega, double L, 
+                                  enum gsl_integration_qawo_enum sine,
+                                  size_t n);
+
+int
+gsl_integration_qawo_table_set (gsl_integration_qawo_table * t,
+                                double omega, double L,
+                                enum gsl_integration_qawo_enum sine);
+
+int
+gsl_integration_qawo_table_set_length (gsl_integration_qawo_table * t,
+                                       double L);
+
+void
+gsl_integration_qawo_table_free (gsl_integration_qawo_table * t);
+
+
+/* Definition of an integration rule */
+
+typedef void gsl_integration_rule (const gsl_function * f,
+                                   double a, double b,
+                                   double *result, double *abserr,
+                                   double *defabs, double *resabs);
+
+void gsl_integration_qk15 (const gsl_function * f, double a, double b,
+                           double *result, double *abserr,
+                           double *resabs, double *resasc);
+
+void gsl_integration_qk21 (const gsl_function * f, double a, double b,
+                           double *result, double *abserr,
+                           double *resabs, double *resasc);
+
+void gsl_integration_qk31 (const gsl_function * f, double a, double b,
+                           double *result, double *abserr,
+                           double *resabs, double *resasc);
+
+void gsl_integration_qk41 (const gsl_function * f, double a, double b,
+                           double *result, double *abserr,
+                           double *resabs, double *resasc);
+
+void gsl_integration_qk51 (const gsl_function * f, double a, double b,
+                           double *result, double *abserr,
+                           double *resabs, double *resasc);
+
+void gsl_integration_qk61 (const gsl_function * f, double a, double b,
+                           double *result, double *abserr,
+                           double *resabs, double *resasc);
+
+void gsl_integration_qcheb (gsl_function * f, double a, double b, 
+                            double *cheb12, double *cheb24);
+
+/* The low-level integration rules in QUADPACK are identified by small
+   integers (1-6). We'll use symbolic constants to refer to them.  */
+
+enum
+  {
+    GSL_INTEG_GAUSS15 = 1,      /* 15 point Gauss-Kronrod rule */
+    GSL_INTEG_GAUSS21 = 2,      /* 21 point Gauss-Kronrod rule */
+    GSL_INTEG_GAUSS31 = 3,      /* 31 point Gauss-Kronrod rule */
+    GSL_INTEG_GAUSS41 = 4,      /* 41 point Gauss-Kronrod rule */
+    GSL_INTEG_GAUSS51 = 5,      /* 51 point Gauss-Kronrod rule */
+    GSL_INTEG_GAUSS61 = 6       /* 61 point Gauss-Kronrod rule */
+  };
+
+void 
+gsl_integration_qk (const int n, const double xgk[], 
+                    const double wg[], const double wgk[],
+                    double fv1[], double fv2[],
+                    const gsl_function *f, double a, double b,
+                    double * result, double * abserr, 
+                    double * resabs, double * resasc);
+
+
+int gsl_integration_qng (const gsl_function * f,
+                         double a, double b,
+                         double epsabs, double epsrel,
+                         double *result, double *abserr,
+                         size_t * neval);
+
+int gsl_integration_qag (const gsl_function * f,
+                         double a, double b,
+                         double epsabs, double epsrel, size_t limit,
+                         int key,
+                         gsl_integration_workspace * workspace,
+                         double *result, double *abserr);
+
+int gsl_integration_qagi (gsl_function * f,
+                          double epsabs, double epsrel, size_t limit,
+                          gsl_integration_workspace * workspace,
+                          double *result, double *abserr);
+
+int gsl_integration_qagiu (gsl_function * f,
+                           double a,
+                           double epsabs, double epsrel, size_t limit,
+                           gsl_integration_workspace * workspace,
+                           double *result, double *abserr);
+
+int gsl_integration_qagil (gsl_function * f,
+                           double b,
+                           double epsabs, double epsrel, size_t limit,
+                           gsl_integration_workspace * workspace,
+                           double *result, double *abserr);
+
+
+int gsl_integration_qags (const gsl_function * f,
+                          double a, double b,
+                          double epsabs, double epsrel, size_t limit,
+                          gsl_integration_workspace * workspace,
+                          double *result, double *abserr);
+
+int gsl_integration_qagp (const gsl_function * f,
+                          double *pts, size_t npts,
+                          double epsabs, double epsrel, size_t limit,
+                          gsl_integration_workspace * workspace,
+                          double *result, double *abserr);
+
+int gsl_integration_qawc (gsl_function *f,
+                          const double a, const double b, const double c,
+                          const double epsabs, const double epsrel, const size_t limit,
+                          gsl_integration_workspace * workspace,
+                          double * result, double * abserr);
+
+int gsl_integration_qaws (gsl_function * f,
+                          const double a, const double b,
+                          gsl_integration_qaws_table * t,
+                          const double epsabs, const double epsrel,
+                          const size_t limit,
+                          gsl_integration_workspace * workspace,
+                          double *result, double *abserr);
+
+int gsl_integration_qawo (gsl_function * f,
+                          const double a,
+                          const double epsabs, const double epsrel,
+                          const size_t limit,
+                          gsl_integration_workspace * workspace,
+                          gsl_integration_qawo_table * wf,
+                          double *result, double *abserr);
+
+int gsl_integration_qawf (gsl_function * f,
+                          const double a,
+                          const double epsabs,
+                          const size_t limit,
+                          gsl_integration_workspace * workspace,
+                          gsl_integration_workspace * cycle_workspace,
+                          gsl_integration_qawo_table * wf,
+                          double *result, double *abserr);
+
+/* Workspace for fixed-order Gauss-Legendre integration */
+
+typedef struct
+  {
+    size_t n;         /* number of points */
+    double *x;        /* Gauss abscissae/points */
+    double *w;        /* Gauss weights for each abscissae */
+    int precomputed;  /* high precision abscissae/weights precomputed? */
+  }
+gsl_integration_glfixed_table;
+
+
+gsl_integration_glfixed_table *
+  gsl_integration_glfixed_table_alloc (size_t n);
+
+void
+  gsl_integration_glfixed_table_free (gsl_integration_glfixed_table * t);
+
+/* Routine for fixed-order Gauss-Legendre integration */
+
+double
+  gsl_integration_glfixed (const gsl_function *f,
+                           double a,
+                           double b,
+                           const gsl_integration_glfixed_table * t);
+
+/* Routine to retrieve the i-th Gauss-Legendre point and weight from t */
+
+int
+  gsl_integration_glfixed_point (double a,
+                                 double b,
+                                 size_t i,
+                                 double *xi,
+                                 double *wi,
+                                 const gsl_integration_glfixed_table * t);
+
+
+/* Cquad integration - Pedro Gonnet */
+
+/* Data of a single interval */
+typedef struct
+{
+  double a, b;
+  double c[64];
+  double fx[33];
+  double igral, err;
+  int depth, rdepth, ndiv;
+} gsl_integration_cquad_ival;
+
+
+/* The workspace is just a collection of intervals */
+typedef struct
+{
+  size_t size;
+  gsl_integration_cquad_ival *ivals;
+  size_t *heap;
+} gsl_integration_cquad_workspace;
+
+gsl_integration_cquad_workspace *
+gsl_integration_cquad_workspace_alloc (const size_t n);
+
+void
+gsl_integration_cquad_workspace_free (gsl_integration_cquad_workspace * w);
+
+int
+gsl_integration_cquad (const gsl_function * f, double a, double b,
+                      double epsabs, double epsrel,
+                      gsl_integration_cquad_workspace * ws,
+                      double *result, double *abserr, size_t * nevals);
+
+
+__END_DECLS
+
+#endif /* __GSL_INTEGRATION_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_interp.h b/util/X86LINUX64/include/gsl/gsl_interp.h
new file mode 100644 (file)
index 0000000..03dc973
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_interp.h
@@ -0,0 +1,224 @@
+/* interpolation/gsl_interp.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2004 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman
+ */
+#ifndef __GSL_INTERP_H__
+#define __GSL_INTERP_H__
+#include <stdlib.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_types.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/* evaluation accelerator */
+typedef struct {
+  size_t  cache;        /* cache of index   */
+  size_t  miss_count;   /* keep statistics  */
+  size_t  hit_count;
+}
+gsl_interp_accel;
+
+
+/* interpolation object type */
+typedef struct {
+  const char * name;
+  unsigned int min_size;
+  void *  (*alloc) (size_t size);
+  int     (*init)    (void *, const double xa[], const double ya[], size_t size);
+  int     (*eval)    (const void *, const double xa[], const double ya[], size_t size, double x, gsl_interp_accel *, double * y);
+  int     (*eval_deriv)  (const void *, const double xa[], const double ya[], size_t size, double x, gsl_interp_accel *, double * y_p);
+  int     (*eval_deriv2) (const void *, const double xa[], const double ya[], size_t size, double x, gsl_interp_accel *, double * y_pp);
+  int     (*eval_integ)  (const void *, const double xa[], const double ya[], size_t size, gsl_interp_accel *, double a, double b, double * result);
+  void    (*free)         (void *);
+
+} gsl_interp_type;
+
+
+/* general interpolation object */
+typedef struct {
+  const gsl_interp_type * type;
+  double  xmin;
+  double  xmax;
+  size_t  size;
+  void * state;
+} gsl_interp;
+
+
+/* available types */
+GSL_VAR const gsl_interp_type * gsl_interp_linear;
+GSL_VAR const gsl_interp_type * gsl_interp_polynomial;
+GSL_VAR const gsl_interp_type * gsl_interp_cspline;
+GSL_VAR const gsl_interp_type * gsl_interp_cspline_periodic;
+GSL_VAR const gsl_interp_type * gsl_interp_akima;
+GSL_VAR const gsl_interp_type * gsl_interp_akima_periodic;
+
+gsl_interp_accel *
+gsl_interp_accel_alloc(void);
+
+int
+gsl_interp_accel_reset (gsl_interp_accel * a);
+
+void
+gsl_interp_accel_free(gsl_interp_accel * a);
+
+gsl_interp *
+gsl_interp_alloc(const gsl_interp_type * T, size_t n);
+     
+int
+gsl_interp_init(gsl_interp * obj, const double xa[], const double ya[], size_t size);
+
+const char * gsl_interp_name(const gsl_interp * interp);
+unsigned int gsl_interp_min_size(const gsl_interp * interp);
+unsigned int gsl_interp_type_min_size(const gsl_interp_type * T);
+
+
+int
+gsl_interp_eval_e(const gsl_interp * obj,
+                  const double xa[], const double ya[], double x,
+                  gsl_interp_accel * a, double * y);
+
+double
+gsl_interp_eval(const gsl_interp * obj,
+                const double xa[], const double ya[], double x,
+                gsl_interp_accel * a);
+
+int
+gsl_interp_eval_deriv_e(const gsl_interp * obj,
+                        const double xa[], const double ya[], double x,
+                        gsl_interp_accel * a,
+                        double * d);
+
+double
+gsl_interp_eval_deriv(const gsl_interp * obj,
+                      const double xa[], const double ya[], double x,
+                      gsl_interp_accel * a);
+
+int
+gsl_interp_eval_deriv2_e(const gsl_interp * obj,
+                         const double xa[], const double ya[], double x,
+                         gsl_interp_accel * a,
+                         double * d2);
+
+double
+gsl_interp_eval_deriv2(const gsl_interp * obj,
+                       const double xa[], const double ya[], double x,
+                       gsl_interp_accel * a);
+
+int
+gsl_interp_eval_integ_e(const gsl_interp * obj,
+                        const double xa[], const double ya[],
+                        double a, double b,
+                        gsl_interp_accel * acc,
+                        double * result);
+
+double
+gsl_interp_eval_integ(const gsl_interp * obj,
+                      const double xa[], const double ya[],
+                      double a, double b,
+                      gsl_interp_accel * acc);
+
+void
+gsl_interp_free(gsl_interp * interp);
+
+INLINE_DECL size_t
+gsl_interp_bsearch(const double x_array[], double x,
+                   size_t index_lo, size_t index_hi);
+
+#ifdef HAVE_INLINE
+
+/* Perform a binary search of an array of values.
+ * 
+ * The parameters index_lo and index_hi provide an initial bracket,
+ * and it is assumed that index_lo < index_hi. The resulting index
+ * is guaranteed to be strictly less than index_hi and greater than
+ * or equal to index_lo, so that the implicit bracket [index, index+1]
+ * always corresponds to a region within the implicit value range of
+ * the value array.
+ *
+ * Note that this means the relationship of 'x' to x_array[index]
+ * and x_array[index+1] depends on the result region, i.e. the
+ * behaviour at the boundaries may not correspond to what you
+ * expect. We have the following complete specification of the
+ * behaviour.
+ * Suppose the input is x_array[] = { x0, x1, ..., xN }
+ *    if ( x == x0 )           then  index == 0
+ *    if ( x > x0 && x <= x1 ) then  index == 0, and sim. for other interior pts
+ *    if ( x == xN )           then  index == N-1
+ *    if ( x > xN )            then  index == N-1
+ *    if ( x < x0 )            then  index == 0 
+ */
+
+INLINE_FUN size_t
+gsl_interp_bsearch(const double x_array[], double x,
+                   size_t index_lo, size_t index_hi)
+{
+  size_t ilo = index_lo;
+  size_t ihi = index_hi;
+  while(ihi > ilo + 1) {
+    size_t i = (ihi + ilo)/2;
+    if(x_array[i] > x)
+      ihi = i;
+    else
+      ilo = i;
+  }
+  
+  return ilo;
+}
+#endif
+
+INLINE_DECL size_t 
+gsl_interp_accel_find(gsl_interp_accel * a, const double x_array[], size_t size, double x);
+
+#ifdef HAVE_INLINE
+INLINE_FUN size_t
+gsl_interp_accel_find(gsl_interp_accel * a, const double xa[], size_t len, double x)
+{
+  size_t x_index = a->cache;
+ 
+  if(x < xa[x_index]) {
+    a->miss_count++;
+    a->cache = gsl_interp_bsearch(xa, x, 0, x_index);
+  }
+  else if(x >= xa[x_index + 1]) {
+    a->miss_count++;
+    a->cache = gsl_interp_bsearch(xa, x, x_index, len-1);
+  }
+  else {
+    a->hit_count++;
+  }
+  
+  return a->cache;
+}
+#endif /* HAVE_INLINE */
+
+
+__END_DECLS
+
+#endif /* __GSL_INTERP_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_linalg.h b/util/X86LINUX64/include/gsl/gsl_linalg.h
new file mode 100644 (file)
index 0000000..433cfca
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_linalg.h
@@ -0,0 +1,592 @@
+/* linalg/gsl_linalg.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2006, 2007 Gerard Jungman, Brian Gough, Patrick Alken
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_LINALG_H__
+#define __GSL_LINALG_H__
+
+#include <gsl/gsl_mode.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector.h>
+#include <gsl/gsl_matrix.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+#define __BEGIN_DECLS extern "C" {
+#define __END_DECLS }
+#else
+#define __BEGIN_DECLS           /* empty */
+#define __END_DECLS             /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef enum
+  {
+    GSL_LINALG_MOD_NONE = 0,
+    GSL_LINALG_MOD_TRANSPOSE = 1,
+    GSL_LINALG_MOD_CONJUGATE = 2
+  }
+gsl_linalg_matrix_mod_t;
+
+
+/* Note: You can now use the gsl_blas_dgemm function instead of matmult */
+
+/* Simple implementation of matrix multiply.
+ * Calculates C = A.B
+ *
+ * exceptions: GSL_EBADLEN
+ */
+int gsl_linalg_matmult (const gsl_matrix * A,
+                        const gsl_matrix * B,
+                        gsl_matrix * C);
+
+
+/* Simple implementation of matrix multiply.
+ * Allows transposition of either matrix, so it
+ * can compute A.B or Trans(A).B or A.Trans(B) or Trans(A).Trans(B)
+ *
+ * exceptions: GSL_EBADLEN
+ */
+int gsl_linalg_matmult_mod (const gsl_matrix * A,
+                            gsl_linalg_matrix_mod_t modA,
+                            const gsl_matrix * B,
+                            gsl_linalg_matrix_mod_t modB,
+                            gsl_matrix * C);
+
+/* Calculate the matrix exponential by the scaling and
+ * squaring method described in Moler + Van Loan,
+ * SIAM Rev 20, 801 (1978). The mode argument allows
+ * choosing an optimal strategy, from the table
+ * given in the paper, for a given precision.
+ *
+ * exceptions: GSL_ENOTSQR, GSL_EBADLEN
+ */
+int gsl_linalg_exponential_ss(
+  const gsl_matrix * A,
+  gsl_matrix * eA,
+  gsl_mode_t mode
+  );
+
+
+/* Householder Transformations */
+
+double gsl_linalg_householder_transform (gsl_vector * v);
+gsl_complex gsl_linalg_complex_householder_transform (gsl_vector_complex * v);
+
+int gsl_linalg_householder_hm (double tau, 
+                               const gsl_vector * v, 
+                               gsl_matrix * A);
+
+int gsl_linalg_householder_mh (double tau, 
+                               const gsl_vector * v, 
+                               gsl_matrix * A);
+
+int gsl_linalg_householder_hv (double tau, 
+                               const gsl_vector * v, 
+                               gsl_vector * w);
+
+int gsl_linalg_householder_hm1 (double tau, 
+                                gsl_matrix * A);
+
+int gsl_linalg_complex_householder_hm (gsl_complex tau, 
+                                       const gsl_vector_complex * v, 
+                                       gsl_matrix_complex * A);
+
+int gsl_linalg_complex_householder_mh (gsl_complex tau,
+                                       const gsl_vector_complex * v,
+                                       gsl_matrix_complex * A);
+
+int gsl_linalg_complex_householder_hv (gsl_complex tau, 
+                                       const gsl_vector_complex * v, 
+                                       gsl_vector_complex * w);
+
+/* Hessenberg reduction */
+
+int gsl_linalg_hessenberg_decomp(gsl_matrix *A, gsl_vector *tau);
+int gsl_linalg_hessenberg_unpack(gsl_matrix * H, gsl_vector * tau,
+                                 gsl_matrix * U);
+int gsl_linalg_hessenberg_unpack_accum(gsl_matrix * H, gsl_vector * tau,
+                                       gsl_matrix * U);
+int gsl_linalg_hessenberg_set_zero(gsl_matrix * H);
+int gsl_linalg_hessenberg_submatrix(gsl_matrix *M, gsl_matrix *A,
+                                    size_t top, gsl_vector *tau);
+
+/* To support gsl-1.9 interface: DEPRECATED */
+int gsl_linalg_hessenberg(gsl_matrix *A, gsl_vector *tau);
+
+
+/* Hessenberg-Triangular reduction */
+
+int gsl_linalg_hesstri_decomp(gsl_matrix * A, gsl_matrix * B,
+                              gsl_matrix * U, gsl_matrix * V,
+                              gsl_vector * work);
+
+/* Singular Value Decomposition
+
+ * exceptions: 
+ */
+
+int
+gsl_linalg_SV_decomp (gsl_matrix * A,
+                      gsl_matrix * V,
+                      gsl_vector * S,
+                      gsl_vector * work);
+
+int
+gsl_linalg_SV_decomp_mod (gsl_matrix * A,
+                          gsl_matrix * X,
+                          gsl_matrix * V,
+                          gsl_vector * S,
+                          gsl_vector * work);
+
+int gsl_linalg_SV_decomp_jacobi (gsl_matrix * A,
+                                 gsl_matrix * Q,
+                                 gsl_vector * S);
+
+int
+gsl_linalg_SV_solve (const gsl_matrix * U,
+                     const gsl_matrix * Q,
+                     const gsl_vector * S,
+                     const gsl_vector * b,
+                     gsl_vector * x);
+
+
+/* LU Decomposition, Gaussian elimination with partial pivoting
+ */
+
+int gsl_linalg_LU_decomp (gsl_matrix * A, gsl_permutation * p, int *signum);
+
+int gsl_linalg_LU_solve (const gsl_matrix * LU,
+                         const gsl_permutation * p,
+                         const gsl_vector * b,
+                         gsl_vector * x);
+
+int gsl_linalg_LU_svx (const gsl_matrix * LU,
+                       const gsl_permutation * p,
+                       gsl_vector * x);
+
+int gsl_linalg_LU_refine (const gsl_matrix * A,
+                          const gsl_matrix * LU,
+                          const gsl_permutation * p,
+                          const gsl_vector * b,
+                          gsl_vector * x,
+                          gsl_vector * residual);
+
+int gsl_linalg_LU_invert (const gsl_matrix * LU,
+                          const gsl_permutation * p,
+                          gsl_matrix * inverse);
+
+double gsl_linalg_LU_det (gsl_matrix * LU, int signum);
+double gsl_linalg_LU_lndet (gsl_matrix * LU);
+int gsl_linalg_LU_sgndet (gsl_matrix * lu, int signum);
+
+/* Complex LU Decomposition */
+
+int gsl_linalg_complex_LU_decomp (gsl_matrix_complex * A, 
+                                  gsl_permutation * p, 
+                                  int *signum);
+
+int gsl_linalg_complex_LU_solve (const gsl_matrix_complex * LU,
+                                 const gsl_permutation * p,
+                                 const gsl_vector_complex * b,
+                                 gsl_vector_complex * x);
+
+int gsl_linalg_complex_LU_svx (const gsl_matrix_complex * LU,
+                               const gsl_permutation * p,
+                               gsl_vector_complex * x);
+
+int gsl_linalg_complex_LU_refine (const gsl_matrix_complex * A,
+                                  const gsl_matrix_complex * LU,
+                                  const gsl_permutation * p,
+                                  const gsl_vector_complex * b,
+                                  gsl_vector_complex * x,
+                                  gsl_vector_complex * residual);
+
+int gsl_linalg_complex_LU_invert (const gsl_matrix_complex * LU,
+                                  const gsl_permutation * p,
+                                  gsl_matrix_complex * inverse);
+
+gsl_complex gsl_linalg_complex_LU_det (gsl_matrix_complex * LU,
+                                       int signum);
+
+double gsl_linalg_complex_LU_lndet (gsl_matrix_complex * LU);
+
+gsl_complex gsl_linalg_complex_LU_sgndet (gsl_matrix_complex * LU,
+                                          int signum);
+
+/* QR decomposition */
+
+int gsl_linalg_QR_decomp (gsl_matrix * A,
+                          gsl_vector * tau);
+
+int gsl_linalg_QR_solve (const gsl_matrix * QR,
+                         const gsl_vector * tau,
+                         const gsl_vector * b,
+                         gsl_vector * x);
+
+int gsl_linalg_QR_svx (const gsl_matrix * QR,
+                       const gsl_vector * tau,
+                       gsl_vector * x);
+
+int gsl_linalg_QR_lssolve (const gsl_matrix * QR, 
+                           const gsl_vector * tau, 
+                           const gsl_vector * b, 
+                           gsl_vector * x, 
+                           gsl_vector * residual);
+
+
+int gsl_linalg_QR_QRsolve (gsl_matrix * Q,
+                           gsl_matrix * R,
+                           const gsl_vector * b,
+                           gsl_vector * x);
+
+int gsl_linalg_QR_Rsolve (const gsl_matrix * QR,
+                          const gsl_vector * b,
+                          gsl_vector * x);
+
+int gsl_linalg_QR_Rsvx (const gsl_matrix * QR,
+                        gsl_vector * x);
+
+int gsl_linalg_QR_update (gsl_matrix * Q,
+                          gsl_matrix * R,
+                          gsl_vector * w,
+                          const gsl_vector * v);
+
+int gsl_linalg_QR_QTvec (const gsl_matrix * QR,
+                         const gsl_vector * tau,
+                         gsl_vector * v);
+
+int gsl_linalg_QR_Qvec (const gsl_matrix * QR,
+                        const gsl_vector * tau,
+                        gsl_vector * v);
+
+int gsl_linalg_QR_QTmat (const gsl_matrix * QR,
+                         const gsl_vector * tau,
+                         gsl_matrix * A);
+
+int gsl_linalg_QR_unpack (const gsl_matrix * QR,
+                          const gsl_vector * tau,
+                          gsl_matrix * Q,
+                          gsl_matrix * R);
+
+int gsl_linalg_R_solve (const gsl_matrix * R,
+                        const gsl_vector * b,
+                        gsl_vector * x);
+
+int gsl_linalg_R_svx (const gsl_matrix * R,
+                      gsl_vector * x);
+
+
+/* Q R P^T decomposition */
+
+int gsl_linalg_QRPT_decomp (gsl_matrix * A,
+                            gsl_vector * tau,
+                            gsl_permutation * p,
+                            int *signum,
+                            gsl_vector * norm);
+
+int gsl_linalg_QRPT_decomp2 (const gsl_matrix * A, 
+                             gsl_matrix * q, gsl_matrix * r, 
+                             gsl_vector * tau, 
+                             gsl_permutation * p, 
+                             int *signum,
+                             gsl_vector * norm);
+
+int gsl_linalg_QRPT_solve (const gsl_matrix * QR,
+                           const gsl_vector * tau,
+                           const gsl_permutation * p,
+                           const gsl_vector * b,
+                           gsl_vector * x);
+
+
+int gsl_linalg_QRPT_svx (const gsl_matrix * QR,
+                         const gsl_vector * tau,
+                         const gsl_permutation * p,
+                         gsl_vector * x);
+
+int gsl_linalg_QRPT_QRsolve (const gsl_matrix * Q,
+                             const gsl_matrix * R,
+                             const gsl_permutation * p,
+                             const gsl_vector * b,
+                             gsl_vector * x);
+
+int gsl_linalg_QRPT_Rsolve (const gsl_matrix * QR,
+                             const gsl_permutation * p,
+                             const gsl_vector * b,
+                             gsl_vector * x);
+
+int gsl_linalg_QRPT_Rsvx (const gsl_matrix * QR,
+                           const gsl_permutation * p,
+                           gsl_vector * x);
+
+int gsl_linalg_QRPT_update (gsl_matrix * Q,
+                            gsl_matrix * R,
+                            const gsl_permutation * p,
+                            gsl_vector * u,
+                            const gsl_vector * v);
+
+/* LQ decomposition */
+
+int gsl_linalg_LQ_decomp (gsl_matrix * A, gsl_vector * tau);
+
+int gsl_linalg_LQ_solve_T (const gsl_matrix * LQ, const gsl_vector * tau, 
+                        const gsl_vector * b, gsl_vector * x);
+
+int gsl_linalg_LQ_svx_T (const gsl_matrix * LQ, const gsl_vector * tau, 
+                         gsl_vector * x);
+
+int gsl_linalg_LQ_lssolve_T (const gsl_matrix * LQ, const gsl_vector * tau, 
+                          const gsl_vector * b, gsl_vector * x, 
+                          gsl_vector * residual);
+
+int gsl_linalg_LQ_Lsolve_T (const gsl_matrix * LQ, const gsl_vector * b, 
+                         gsl_vector * x);
+
+int gsl_linalg_LQ_Lsvx_T (const gsl_matrix * LQ, gsl_vector * x);
+
+int gsl_linalg_L_solve_T (const gsl_matrix * L, const gsl_vector * b, 
+                       gsl_vector * x);
+
+int gsl_linalg_LQ_vecQ (const gsl_matrix * LQ, const gsl_vector * tau, 
+                       gsl_vector * v);
+
+int gsl_linalg_LQ_vecQT (const gsl_matrix * LQ, const gsl_vector * tau, 
+                        gsl_vector * v);
+
+int gsl_linalg_LQ_unpack (const gsl_matrix * LQ, const gsl_vector * tau, 
+                         gsl_matrix * Q, gsl_matrix * L);
+
+int gsl_linalg_LQ_update (gsl_matrix * Q, gsl_matrix * R,
+                         const gsl_vector * v, gsl_vector * w);
+int gsl_linalg_LQ_LQsolve (gsl_matrix * Q, gsl_matrix * L, 
+                          const gsl_vector * b, gsl_vector * x);
+
+/* P^T L Q decomposition */
+
+int gsl_linalg_PTLQ_decomp (gsl_matrix * A, gsl_vector * tau, 
+                           gsl_permutation * p, int *signum, 
+                           gsl_vector * norm);
+
+int gsl_linalg_PTLQ_decomp2 (const gsl_matrix * A, gsl_matrix * q, 
+                            gsl_matrix * r, gsl_vector * tau, 
+                            gsl_permutation * p, int *signum, 
+                            gsl_vector * norm);
+
+int gsl_linalg_PTLQ_solve_T (const gsl_matrix * QR,
+                          const gsl_vector * tau,
+                          const gsl_permutation * p,
+                          const gsl_vector * b,
+                          gsl_vector * x);
+
+int gsl_linalg_PTLQ_svx_T (const gsl_matrix * LQ,
+                           const gsl_vector * tau,
+                           const gsl_permutation * p,
+                           gsl_vector * x);
+
+int gsl_linalg_PTLQ_LQsolve_T (const gsl_matrix * Q, const gsl_matrix * L,
+                            const gsl_permutation * p,
+                            const gsl_vector * b,
+                            gsl_vector * x);
+
+int gsl_linalg_PTLQ_Lsolve_T (const gsl_matrix * LQ,
+                           const gsl_permutation * p,
+                           const gsl_vector * b,
+                           gsl_vector * x);
+
+int gsl_linalg_PTLQ_Lsvx_T (const gsl_matrix * LQ,
+                         const gsl_permutation * p,
+                         gsl_vector * x);
+
+int gsl_linalg_PTLQ_update (gsl_matrix * Q, gsl_matrix * L,
+                           const gsl_permutation * p,
+                           const gsl_vector * v, gsl_vector * w);
+
+/* Cholesky Decomposition */
+
+int gsl_linalg_cholesky_decomp (gsl_matrix * A);
+
+int gsl_linalg_cholesky_solve (const gsl_matrix * cholesky,
+                               const gsl_vector * b,
+                               gsl_vector * x);
+
+int gsl_linalg_cholesky_svx (const gsl_matrix * cholesky,
+                             gsl_vector * x);
+
+int gsl_linalg_cholesky_invert(gsl_matrix * cholesky);
+
+/* Cholesky decomposition with unit-diagonal triangular parts.
+ *   A = L D L^T, where diag(L) = (1,1,...,1).
+ *   Upon exit, A contains L and L^T as for Cholesky, and
+ *   the diagonal of A is (1,1,...,1). The vector Dis set
+ *   to the diagonal elements of the diagonal matrix D.
+ */
+int gsl_linalg_cholesky_decomp_unit(gsl_matrix * A, gsl_vector * D);
+
+/* Complex Cholesky Decomposition */
+
+int gsl_linalg_complex_cholesky_decomp (gsl_matrix_complex * A);
+
+int gsl_linalg_complex_cholesky_solve (const gsl_matrix_complex * cholesky,
+                                       const gsl_vector_complex * b,
+                                       gsl_vector_complex * x);
+
+int gsl_linalg_complex_cholesky_svx (const gsl_matrix_complex * cholesky,
+                                     gsl_vector_complex * x);
+
+int gsl_linalg_complex_cholesky_invert(gsl_matrix_complex * cholesky);
+
+
+/* Symmetric to symmetric tridiagonal decomposition */
+
+int gsl_linalg_symmtd_decomp (gsl_matrix * A, 
+                              gsl_vector * tau);
+
+int gsl_linalg_symmtd_unpack (const gsl_matrix * A, 
+                              const gsl_vector * tau,
+                              gsl_matrix * Q, 
+                              gsl_vector * diag, 
+                              gsl_vector * subdiag);
+
+int gsl_linalg_symmtd_unpack_T (const gsl_matrix * A,
+                                gsl_vector * diag, 
+                                gsl_vector * subdiag);
+
+/* Hermitian to symmetric tridiagonal decomposition */
+
+int gsl_linalg_hermtd_decomp (gsl_matrix_complex * A, 
+                              gsl_vector_complex * tau);
+
+int gsl_linalg_hermtd_unpack (const gsl_matrix_complex * A, 
+                              const gsl_vector_complex * tau,
+                              gsl_matrix_complex * U, 
+                              gsl_vector * diag, 
+                              gsl_vector * sudiag);
+
+int gsl_linalg_hermtd_unpack_T (const gsl_matrix_complex * A, 
+                                gsl_vector * diag, 
+                                gsl_vector * subdiag);
+
+/* Linear Solve Using Householder Transformations
+
+ * exceptions: 
+ */
+
+int gsl_linalg_HH_solve (gsl_matrix * A, const gsl_vector * b, gsl_vector * x);
+int gsl_linalg_HH_svx (gsl_matrix * A, gsl_vector * x);
+
+/* Linear solve for a symmetric tridiagonal system.
+
+ * The input vectors represent the NxN matrix as follows:
+ *
+ *     diag[0]  offdiag[0]             0    ...
+ *  offdiag[0]     diag[1]    offdiag[1]    ...
+ *           0  offdiag[1]       diag[2]    ...
+ *           0           0    offdiag[2]    ...
+ *         ...         ...           ...    ...
+ */
+int gsl_linalg_solve_symm_tridiag (const gsl_vector * diag,
+                                   const gsl_vector * offdiag,
+                                   const gsl_vector * b,
+                                   gsl_vector * x);
+
+/* Linear solve for a nonsymmetric tridiagonal system.
+
+ * The input vectors represent the NxN matrix as follows:
+ *
+ *       diag[0]  abovediag[0]              0    ...
+ *  belowdiag[0]       diag[1]   abovediag[1]    ...
+ *             0  belowdiag[1]        diag[2]    ...
+ *             0             0   belowdiag[2]    ...
+ *           ...           ...            ...    ...
+ */
+int gsl_linalg_solve_tridiag (const gsl_vector * diag,
+                                   const gsl_vector * abovediag,
+                                   const gsl_vector * belowdiag,
+                                   const gsl_vector * b,
+                                   gsl_vector * x);
+
+
+/* Linear solve for a symmetric cyclic tridiagonal system.
+
+ * The input vectors represent the NxN matrix as follows:
+ *
+ *      diag[0]  offdiag[0]             0   .....  offdiag[N-1]
+ *   offdiag[0]     diag[1]    offdiag[1]   .....
+ *            0  offdiag[1]       diag[2]   .....
+ *            0           0    offdiag[2]   .....
+ *          ...         ...
+ * offdiag[N-1]         ...
+ */
+int gsl_linalg_solve_symm_cyc_tridiag (const gsl_vector * diag,
+                                       const gsl_vector * offdiag,
+                                       const gsl_vector * b,
+                                       gsl_vector * x);
+
+/* Linear solve for a nonsymmetric cyclic tridiagonal system.
+
+ * The input vectors represent the NxN matrix as follows:
+ *
+ *        diag[0]  abovediag[0]             0   .....  belowdiag[N-1]
+ *   belowdiag[0]       diag[1]  abovediag[1]   .....
+ *              0  belowdiag[1]       diag[2]
+ *              0             0  belowdiag[2]   .....
+ *            ...           ...
+ * abovediag[N-1]           ...
+ */
+int gsl_linalg_solve_cyc_tridiag (const gsl_vector * diag,
+                                  const gsl_vector * abovediag,
+                                  const gsl_vector * belowdiag,
+                                  const gsl_vector * b,
+                                  gsl_vector * x);
+
+
+/* Bidiagonal decomposition */
+
+int gsl_linalg_bidiag_decomp (gsl_matrix * A, 
+                              gsl_vector * tau_U, 
+                              gsl_vector * tau_V);
+
+int gsl_linalg_bidiag_unpack (const gsl_matrix * A, 
+                              const gsl_vector * tau_U, 
+                              gsl_matrix * U, 
+                              const gsl_vector * tau_V,
+                              gsl_matrix * V,
+                              gsl_vector * diag, 
+                              gsl_vector * superdiag);
+
+int gsl_linalg_bidiag_unpack2 (gsl_matrix * A, 
+                               gsl_vector * tau_U, 
+                               gsl_vector * tau_V,
+                               gsl_matrix * V);
+
+int gsl_linalg_bidiag_unpack_B (const gsl_matrix * A, 
+                                gsl_vector * diag, 
+                                gsl_vector * superdiag);
+
+/* Balancing */
+
+int gsl_linalg_balance_matrix (gsl_matrix * A, gsl_vector * D);
+int gsl_linalg_balance_accum (gsl_matrix * A, gsl_vector * D);
+int gsl_linalg_balance_columns (gsl_matrix * A, gsl_vector * D);
+
+
+__END_DECLS
+
+#endif /* __GSL_LINALG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_machine.h b/util/X86LINUX64/include/gsl/gsl_machine.h
new file mode 100644 (file)
index 0000000..c44ffc2
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_machine.h
@@ -0,0 +1,104 @@
+/* Author:  B. Gough and G. Jungman */
+#ifndef __GSL_MACHINE_H__
+#define __GSL_MACHINE_H__
+
+#include <limits.h>
+#include <float.h>
+
+/* magic constants; mostly for the benefit of the implementation */
+
+/* -*-MACHINE CONSTANTS-*-
+ *
+ * PLATFORM: Whiz-O-Matic 9000
+ * FP_PLATFORM: IEEE-Virtual
+ * HOSTNAME: nnn.lanl.gov
+ * DATE: Fri Nov 20 17:53:26 MST 1998
+ */
+#define GSL_DBL_EPSILON        2.2204460492503131e-16
+#define GSL_SQRT_DBL_EPSILON   1.4901161193847656e-08
+#define GSL_ROOT3_DBL_EPSILON  6.0554544523933429e-06
+#define GSL_ROOT4_DBL_EPSILON  1.2207031250000000e-04
+#define GSL_ROOT5_DBL_EPSILON  7.4009597974140505e-04
+#define GSL_ROOT6_DBL_EPSILON  2.4607833005759251e-03
+#define GSL_LOG_DBL_EPSILON   (-3.6043653389117154e+01)
+
+#define GSL_DBL_MIN        2.2250738585072014e-308
+#define GSL_SQRT_DBL_MIN   1.4916681462400413e-154
+#define GSL_ROOT3_DBL_MIN  2.8126442852362996e-103
+#define GSL_ROOT4_DBL_MIN  1.2213386697554620e-77
+#define GSL_ROOT5_DBL_MIN  2.9476022969691763e-62
+#define GSL_ROOT6_DBL_MIN  5.3034368905798218e-52
+#define GSL_LOG_DBL_MIN   (-7.0839641853226408e+02)
+
+#define GSL_DBL_MAX        1.7976931348623157e+308
+#define GSL_SQRT_DBL_MAX   1.3407807929942596e+154
+#define GSL_ROOT3_DBL_MAX  5.6438030941222897e+102
+#define GSL_ROOT4_DBL_MAX  1.1579208923731620e+77
+#define GSL_ROOT5_DBL_MAX  4.4765466227572707e+61
+#define GSL_ROOT6_DBL_MAX  2.3756689782295612e+51
+#define GSL_LOG_DBL_MAX    7.0978271289338397e+02
+
+#define GSL_FLT_EPSILON        1.1920928955078125e-07
+#define GSL_SQRT_FLT_EPSILON   3.4526698300124393e-04
+#define GSL_ROOT3_FLT_EPSILON  4.9215666011518501e-03
+#define GSL_ROOT4_FLT_EPSILON  1.8581361171917516e-02
+#define GSL_ROOT5_FLT_EPSILON  4.1234622211652937e-02
+#define GSL_ROOT6_FLT_EPSILON  7.0153878019335827e-02
+#define GSL_LOG_FLT_EPSILON   (-1.5942385152878742e+01)
+
+#define GSL_FLT_MIN        1.1754943508222875e-38
+#define GSL_SQRT_FLT_MIN   1.0842021724855044e-19
+#define GSL_ROOT3_FLT_MIN  2.2737367544323241e-13
+#define GSL_ROOT4_FLT_MIN  3.2927225399135965e-10
+#define GSL_ROOT5_FLT_MIN  2.5944428542140822e-08
+#define GSL_ROOT6_FLT_MIN  4.7683715820312542e-07
+#define GSL_LOG_FLT_MIN   (-8.7336544750553102e+01)
+
+#define GSL_FLT_MAX        3.4028234663852886e+38
+#define GSL_SQRT_FLT_MAX   1.8446743523953730e+19
+#define GSL_ROOT3_FLT_MAX  6.9814635196223242e+12
+#define GSL_ROOT4_FLT_MAX  4.2949672319999986e+09
+#define GSL_ROOT5_FLT_MAX  5.0859007855960041e+07
+#define GSL_ROOT6_FLT_MAX  2.6422459233807749e+06
+#define GSL_LOG_FLT_MAX    8.8722839052068352e+01
+
+#define GSL_SFLT_EPSILON        4.8828125000000000e-04
+#define GSL_SQRT_SFLT_EPSILON   2.2097086912079612e-02
+#define GSL_ROOT3_SFLT_EPSILON  7.8745065618429588e-02
+#define GSL_ROOT4_SFLT_EPSILON  1.4865088937534013e-01
+#define GSL_ROOT5_SFLT_EPSILON  2.1763764082403100e-01
+#define GSL_ROOT6_SFLT_EPSILON  2.8061551207734325e-01
+#define GSL_LOG_SFLT_EPSILON   (-7.6246189861593985e+00)
+
+/* !MACHINE CONSTANTS! */
+
+
+/* a little internal backwards compatibility */
+#define GSL_MACH_EPS  GSL_DBL_EPSILON
+
+
+
+/* Here are the constants related to or derived from
+ * machine constants. These are not to be confused with
+ * the constants that define various precision levels
+ * for the precision/error system.
+ *
+ * This information is determined at configure time
+ * and is platform dependent. Edit at your own risk.
+ *
+ * PLATFORM: WHIZ-O-MATIC
+ * CONFIG-DATE: Thu Nov 19 19:27:18 MST 1998
+ * CONFIG-HOST: nnn.lanl.gov
+ */
+
+/* machine precision constants */
+/* #define GSL_MACH_EPS         1.0e-15 */
+#define GSL_SQRT_MACH_EPS       3.2e-08
+#define GSL_ROOT3_MACH_EPS      1.0e-05
+#define GSL_ROOT4_MACH_EPS      0.000178
+#define GSL_ROOT5_MACH_EPS      0.00100
+#define GSL_ROOT6_MACH_EPS      0.00316
+#define GSL_LOG_MACH_EPS       (-34.54)
+
+
+#endif /* __GSL_MACHINE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_math.h b/util/X86LINUX64/include/gsl/gsl_math.h
new file mode 100644 (file)
index 0000000..2d09df1
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_math.h
@@ -0,0 +1,164 @@
+/* gsl_math.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2004, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATH_H__
+#define __GSL_MATH_H__
+#include <math.h>
+#include <gsl/gsl_sys.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_machine.h>
+#include <gsl/gsl_precision.h>
+#include <gsl/gsl_nan.h>
+#include <gsl/gsl_pow_int.h>
+#include <gsl/gsl_minmax.h>
+
+#ifndef M_E
+#define M_E        2.71828182845904523536028747135      /* e */
+#endif
+
+#ifndef M_LOG2E
+#define M_LOG2E    1.44269504088896340735992468100      /* log_2 (e) */
+#endif
+
+#ifndef M_LOG10E
+#define M_LOG10E   0.43429448190325182765112891892      /* log_10 (e) */
+#endif
+
+#ifndef M_SQRT2
+#define M_SQRT2    1.41421356237309504880168872421      /* sqrt(2) */
+#endif
+
+#ifndef M_SQRT1_2
+#define M_SQRT1_2  0.70710678118654752440084436210      /* sqrt(1/2) */
+#endif
+
+
+#ifndef M_SQRT3
+#define M_SQRT3    1.73205080756887729352744634151      /* sqrt(3) */
+#endif
+
+#ifndef M_PI
+#define M_PI       3.14159265358979323846264338328      /* pi */
+#endif
+
+#ifndef M_PI_2
+#define M_PI_2     1.57079632679489661923132169164      /* pi/2 */
+#endif
+
+#ifndef M_PI_4
+#define M_PI_4     0.78539816339744830961566084582     /* pi/4 */
+#endif
+
+#ifndef M_SQRTPI
+#define M_SQRTPI   1.77245385090551602729816748334      /* sqrt(pi) */
+#endif
+
+#ifndef M_2_SQRTPI
+#define M_2_SQRTPI 1.12837916709551257389615890312      /* 2/sqrt(pi) */
+#endif
+
+#ifndef M_1_PI
+#define M_1_PI     0.31830988618379067153776752675      /* 1/pi */
+#endif
+
+#ifndef M_2_PI
+#define M_2_PI     0.63661977236758134307553505349      /* 2/pi */
+#endif
+
+#ifndef M_LN10
+#define M_LN10     2.30258509299404568401799145468      /* ln(10) */
+#endif
+
+#ifndef M_LN2
+#define M_LN2      0.69314718055994530941723212146      /* ln(2) */
+#endif
+
+#ifndef M_LNPI
+#define M_LNPI     1.14472988584940017414342735135      /* ln(pi) */
+#endif
+
+#ifndef M_EULER
+#define M_EULER    0.57721566490153286060651209008      /* Euler constant */
+#endif
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/* other needlessly compulsive abstractions */
+
+#define GSL_IS_ODD(n)  ((n) & 1)
+#define GSL_IS_EVEN(n) (!(GSL_IS_ODD(n)))
+#define GSL_SIGN(x)    ((x) >= 0.0 ? 1 : -1)
+
+/* Return nonzero if x is a real number, i.e. non NaN or infinite. */
+#define GSL_IS_REAL(x) (gsl_finite(x))
+
+/* Definition of an arbitrary function with parameters */
+
+struct gsl_function_struct 
+{
+  double (* function) (double x, void * params);
+  void * params;
+};
+
+typedef struct gsl_function_struct gsl_function ;
+
+#define GSL_FN_EVAL(F,x) (*((F)->function))(x,(F)->params)
+
+/* Definition of an arbitrary function returning two values, r1, r2 */
+
+struct gsl_function_fdf_struct 
+{
+  double (* f) (double x, void * params);
+  double (* df) (double x, void * params);
+  void (* fdf) (double x, void * params, double * f, double * df);
+  void * params;
+};
+
+typedef struct gsl_function_fdf_struct gsl_function_fdf ;
+
+#define GSL_FN_FDF_EVAL_F(FDF,x) (*((FDF)->f))(x,(FDF)->params)
+#define GSL_FN_FDF_EVAL_DF(FDF,x) (*((FDF)->df))(x,(FDF)->params)
+#define GSL_FN_FDF_EVAL_F_DF(FDF,x,y,dy) (*((FDF)->fdf))(x,(FDF)->params,(y),(dy))
+
+
+/* Definition of an arbitrary vector-valued function with parameters */
+
+struct gsl_function_vec_struct 
+{
+  int (* function) (double x, double y[], void * params);
+  void * params;
+};
+
+typedef struct gsl_function_vec_struct gsl_function_vec ;
+
+#define GSL_FN_VEC_EVAL(F,x,y) (*((F)->function))(x,y,(F)->params)
+
+__END_DECLS
+
+#endif /* __GSL_MATH_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix.h b/util/X86LINUX64/include/gsl/gsl_matrix.h
new file mode 100644 (file)
index 0000000..9b7ed76
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix.h
@@ -0,0 +1,25 @@
+#ifndef __GSL_MATRIX_H__
+#define __GSL_MATRIX_H__
+
+#include <gsl/gsl_matrix_complex_long_double.h>
+#include <gsl/gsl_matrix_complex_double.h>
+#include <gsl/gsl_matrix_complex_float.h>
+
+#include <gsl/gsl_matrix_long_double.h>
+#include <gsl/gsl_matrix_double.h>
+#include <gsl/gsl_matrix_float.h>
+
+#include <gsl/gsl_matrix_ulong.h>
+#include <gsl/gsl_matrix_long.h>
+
+#include <gsl/gsl_matrix_uint.h>
+#include <gsl/gsl_matrix_int.h>
+
+#include <gsl/gsl_matrix_ushort.h>
+#include <gsl/gsl_matrix_short.h>
+
+#include <gsl/gsl_matrix_uchar.h>
+#include <gsl/gsl_matrix_char.h>
+
+
+#endif /* __GSL_MATRIX_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix_char.h b/util/X86LINUX64/include/gsl/gsl_matrix_char.h
new file mode 100644 (file)
index 0000000..1e6234a
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix_char.h
@@ -0,0 +1,350 @@
+/* matrix/gsl_matrix_char.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATRIX_CHAR_H__
+#define __GSL_MATRIX_CHAR_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_char.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size1;
+  size_t size2;
+  size_t tda;
+  char * data;
+  gsl_block_char * block;
+  int owner;
+} gsl_matrix_char;
+
+typedef struct
+{
+  gsl_matrix_char matrix;
+} _gsl_matrix_char_view;
+
+typedef _gsl_matrix_char_view gsl_matrix_char_view;
+
+typedef struct
+{
+  gsl_matrix_char matrix;
+} _gsl_matrix_char_const_view;
+
+typedef const _gsl_matrix_char_const_view gsl_matrix_char_const_view;
+
+/* Allocation */
+
+gsl_matrix_char * 
+gsl_matrix_char_alloc (const size_t n1, const size_t n2);
+
+gsl_matrix_char * 
+gsl_matrix_char_calloc (const size_t n1, const size_t n2);
+
+gsl_matrix_char * 
+gsl_matrix_char_alloc_from_block (gsl_block_char * b, 
+                                   const size_t offset, 
+                                   const size_t n1, 
+                                   const size_t n2, 
+                                   const size_t d2);
+
+gsl_matrix_char * 
+gsl_matrix_char_alloc_from_matrix (gsl_matrix_char * m,
+                                    const size_t k1, 
+                                    const size_t k2,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+gsl_vector_char * 
+gsl_vector_char_alloc_row_from_matrix (gsl_matrix_char * m,
+                                        const size_t i);
+
+gsl_vector_char * 
+gsl_vector_char_alloc_col_from_matrix (gsl_matrix_char * m,
+                                        const size_t j);
+
+void gsl_matrix_char_free (gsl_matrix_char * m);
+
+/* Views */
+
+_gsl_matrix_char_view 
+gsl_matrix_char_submatrix (gsl_matrix_char * m, 
+                            const size_t i, const size_t j, 
+                            const size_t n1, const size_t n2);
+
+_gsl_vector_char_view 
+gsl_matrix_char_row (gsl_matrix_char * m, const size_t i);
+
+_gsl_vector_char_view 
+gsl_matrix_char_column (gsl_matrix_char * m, const size_t j);
+
+_gsl_vector_char_view 
+gsl_matrix_char_diagonal (gsl_matrix_char * m);
+
+_gsl_vector_char_view 
+gsl_matrix_char_subdiagonal (gsl_matrix_char * m, const size_t k);
+
+_gsl_vector_char_view 
+gsl_matrix_char_superdiagonal (gsl_matrix_char * m, const size_t k);
+
+_gsl_vector_char_view
+gsl_matrix_char_subrow (gsl_matrix_char * m, const size_t i,
+                         const size_t offset, const size_t n);
+
+_gsl_vector_char_view
+gsl_matrix_char_subcolumn (gsl_matrix_char * m, const size_t j,
+                            const size_t offset, const size_t n);
+
+_gsl_matrix_char_view
+gsl_matrix_char_view_array (char * base,
+                             const size_t n1, 
+                             const size_t n2);
+
+_gsl_matrix_char_view
+gsl_matrix_char_view_array_with_tda (char * base, 
+                                      const size_t n1, 
+                                      const size_t n2,
+                                      const size_t tda);
+
+
+_gsl_matrix_char_view
+gsl_matrix_char_view_vector (gsl_vector_char * v,
+                              const size_t n1, 
+                              const size_t n2);
+
+_gsl_matrix_char_view
+gsl_matrix_char_view_vector_with_tda (gsl_vector_char * v,
+                                       const size_t n1, 
+                                       const size_t n2,
+                                       const size_t tda);
+
+
+_gsl_matrix_char_const_view 
+gsl_matrix_char_const_submatrix (const gsl_matrix_char * m, 
+                                  const size_t i, const size_t j, 
+                                  const size_t n1, const size_t n2);
+
+_gsl_vector_char_const_view 
+gsl_matrix_char_const_row (const gsl_matrix_char * m, 
+                            const size_t i);
+
+_gsl_vector_char_const_view 
+gsl_matrix_char_const_column (const gsl_matrix_char * m, 
+                               const size_t j);
+
+_gsl_vector_char_const_view
+gsl_matrix_char_const_diagonal (const gsl_matrix_char * m);
+
+_gsl_vector_char_const_view 
+gsl_matrix_char_const_subdiagonal (const gsl_matrix_char * m, 
+                                    const size_t k);
+
+_gsl_vector_char_const_view 
+gsl_matrix_char_const_superdiagonal (const gsl_matrix_char * m, 
+                                      const size_t k);
+
+_gsl_vector_char_const_view
+gsl_matrix_char_const_subrow (const gsl_matrix_char * m, const size_t i,
+                               const size_t offset, const size_t n);
+
+_gsl_vector_char_const_view
+gsl_matrix_char_const_subcolumn (const gsl_matrix_char * m, const size_t j,
+                                  const size_t offset, const size_t n);
+
+_gsl_matrix_char_const_view
+gsl_matrix_char_const_view_array (const char * base,
+                                   const size_t n1, 
+                                   const size_t n2);
+
+_gsl_matrix_char_const_view
+gsl_matrix_char_const_view_array_with_tda (const char * base, 
+                                            const size_t n1, 
+                                            const size_t n2,
+                                            const size_t tda);
+
+_gsl_matrix_char_const_view
+gsl_matrix_char_const_view_vector (const gsl_vector_char * v,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+_gsl_matrix_char_const_view
+gsl_matrix_char_const_view_vector_with_tda (const gsl_vector_char * v,
+                                             const size_t n1, 
+                                             const size_t n2,
+                                             const size_t tda);
+
+/* Operations */
+
+void gsl_matrix_char_set_zero (gsl_matrix_char * m);
+void gsl_matrix_char_set_identity (gsl_matrix_char * m);
+void gsl_matrix_char_set_all (gsl_matrix_char * m, char x);
+
+int gsl_matrix_char_fread (FILE * stream, gsl_matrix_char * m) ;
+int gsl_matrix_char_fwrite (FILE * stream, const gsl_matrix_char * m) ;
+int gsl_matrix_char_fscanf (FILE * stream, gsl_matrix_char * m);
+int gsl_matrix_char_fprintf (FILE * stream, const gsl_matrix_char * m, const char * format);
+ 
+int gsl_matrix_char_memcpy(gsl_matrix_char * dest, const gsl_matrix_char * src);
+int gsl_matrix_char_swap(gsl_matrix_char * m1, gsl_matrix_char * m2);
+
+int gsl_matrix_char_swap_rows(gsl_matrix_char * m, const size_t i, const size_t j);
+int gsl_matrix_char_swap_columns(gsl_matrix_char * m, const size_t i, const size_t j);
+int gsl_matrix_char_swap_rowcol(gsl_matrix_char * m, const size_t i, const size_t j);
+int gsl_matrix_char_transpose (gsl_matrix_char * m);
+int gsl_matrix_char_transpose_memcpy (gsl_matrix_char * dest, const gsl_matrix_char * src);
+
+char gsl_matrix_char_max (const gsl_matrix_char * m);
+char gsl_matrix_char_min (const gsl_matrix_char * m);
+void gsl_matrix_char_minmax (const gsl_matrix_char * m, char * min_out, char * max_out);
+
+void gsl_matrix_char_max_index (const gsl_matrix_char * m, size_t * imax, size_t *jmax);
+void gsl_matrix_char_min_index (const gsl_matrix_char * m, size_t * imin, size_t *jmin);
+void gsl_matrix_char_minmax_index (const gsl_matrix_char * m, size_t * imin, size_t * jmin, size_t * imax, size_t * jmax);
+
+int gsl_matrix_char_equal (const gsl_matrix_char * a, const gsl_matrix_char * b);
+
+int gsl_matrix_char_isnull (const gsl_matrix_char * m);
+int gsl_matrix_char_ispos (const gsl_matrix_char * m);
+int gsl_matrix_char_isneg (const gsl_matrix_char * m);
+int gsl_matrix_char_isnonneg (const gsl_matrix_char * m);
+
+int gsl_matrix_char_add (gsl_matrix_char * a, const gsl_matrix_char * b);
+int gsl_matrix_char_sub (gsl_matrix_char * a, const gsl_matrix_char * b);
+int gsl_matrix_char_mul_elements (gsl_matrix_char * a, const gsl_matrix_char * b);
+int gsl_matrix_char_div_elements (gsl_matrix_char * a, const gsl_matrix_char * b);
+int gsl_matrix_char_scale (gsl_matrix_char * a, const double x);
+int gsl_matrix_char_add_constant (gsl_matrix_char * a, const double x);
+int gsl_matrix_char_add_diagonal (gsl_matrix_char * a, const double x);
+
+/***********************************************************************/
+/* The functions below are obsolete                                    */
+/***********************************************************************/
+int gsl_matrix_char_get_row(gsl_vector_char * v, const gsl_matrix_char * m, const size_t i);
+int gsl_matrix_char_get_col(gsl_vector_char * v, const gsl_matrix_char * m, const size_t j);
+int gsl_matrix_char_set_row(gsl_matrix_char * m, const size_t i, const gsl_vector_char * v);
+int gsl_matrix_char_set_col(gsl_matrix_char * m, const size_t j, const gsl_vector_char * v);
+/***********************************************************************/
+
+/* inline functions if you are using GCC */
+
+INLINE_DECL char   gsl_matrix_char_get(const gsl_matrix_char * m, const size_t i, const size_t j);
+INLINE_DECL void    gsl_matrix_char_set(gsl_matrix_char * m, const size_t i, const size_t j, const char x);
+INLINE_DECL char * gsl_matrix_char_ptr(gsl_matrix_char * m, const size_t i, const size_t j);
+INLINE_DECL const char * gsl_matrix_char_const_ptr(const gsl_matrix_char * m, const size_t i, const size_t j);
+
+#ifdef HAVE_INLINE
+INLINE_FUN 
+char
+gsl_matrix_char_get(const gsl_matrix_char * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VAL("first index out of range", GSL_EINVAL, 0) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VAL("second index out of range", GSL_EINVAL, 0) ;
+        }
+    }
+#endif
+  return m->data[i * m->tda + j] ;
+} 
+
+INLINE_FUN 
+void
+gsl_matrix_char_set(gsl_matrix_char * m, const size_t i, const size_t j, const char x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VOID("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VOID("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  m->data[i * m->tda + j] = x ;
+}
+
+INLINE_FUN 
+char *
+gsl_matrix_char_ptr(gsl_matrix_char * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (char *) (m->data + (i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+const char *
+gsl_matrix_char_const_ptr(const gsl_matrix_char * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (const char *) (m->data + (i * m->tda + j)) ;
+} 
+
+#endif
+
+__END_DECLS
+
+#endif /* __GSL_MATRIX_CHAR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix_complex_double.h b/util/X86LINUX64/include/gsl/gsl_matrix_complex_double.h
new file mode 100644 (file)
index 0000000..1564f7c
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix_complex_double.h
@@ -0,0 +1,351 @@
+/* matrix/gsl_matrix_complex_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATRIX_COMPLEX_DOUBLE_H__
+#define __GSL_MATRIX_COMPLEX_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_complex_double.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size1;
+  size_t size2;
+  size_t tda;
+  double * data;
+  gsl_block_complex * block;
+  int owner;
+} gsl_matrix_complex ;
+
+typedef struct
+{
+  gsl_matrix_complex matrix;
+} _gsl_matrix_complex_view;
+
+typedef _gsl_matrix_complex_view gsl_matrix_complex_view;
+
+typedef struct
+{
+  gsl_matrix_complex matrix;
+} _gsl_matrix_complex_const_view;
+
+typedef const _gsl_matrix_complex_const_view gsl_matrix_complex_const_view;
+
+
+/* Allocation */
+
+gsl_matrix_complex * 
+gsl_matrix_complex_alloc (const size_t n1, const size_t n2);
+
+gsl_matrix_complex * 
+gsl_matrix_complex_calloc (const size_t n1, const size_t n2);
+
+gsl_matrix_complex * 
+gsl_matrix_complex_alloc_from_block (gsl_block_complex * b, 
+                                           const size_t offset, 
+                                           const size_t n1, const size_t n2, const size_t d2);
+
+gsl_matrix_complex * 
+gsl_matrix_complex_alloc_from_matrix (gsl_matrix_complex * b,
+                                            const size_t k1, const size_t k2,
+                                            const size_t n1, const size_t n2);
+
+gsl_vector_complex * 
+gsl_vector_complex_alloc_row_from_matrix (gsl_matrix_complex * m,
+                                                const size_t i);
+
+gsl_vector_complex * 
+gsl_vector_complex_alloc_col_from_matrix (gsl_matrix_complex * m,
+                                                const size_t j);
+
+void gsl_matrix_complex_free (gsl_matrix_complex * m);
+
+/* Views */
+
+_gsl_matrix_complex_view 
+gsl_matrix_complex_submatrix (gsl_matrix_complex * m, 
+                            const size_t i, const size_t j, 
+                            const size_t n1, const size_t n2);
+
+_gsl_vector_complex_view 
+gsl_matrix_complex_row (gsl_matrix_complex * m, const size_t i);
+
+_gsl_vector_complex_view 
+gsl_matrix_complex_column (gsl_matrix_complex * m, const size_t j);
+
+_gsl_vector_complex_view 
+gsl_matrix_complex_diagonal (gsl_matrix_complex * m);
+
+_gsl_vector_complex_view 
+gsl_matrix_complex_subdiagonal (gsl_matrix_complex * m, const size_t k);
+
+_gsl_vector_complex_view 
+gsl_matrix_complex_superdiagonal (gsl_matrix_complex * m, const size_t k);
+
+_gsl_vector_complex_view
+gsl_matrix_complex_subrow (gsl_matrix_complex * m,
+                                 const size_t i, const size_t offset,
+                                 const size_t n);
+
+_gsl_vector_complex_view
+gsl_matrix_complex_subcolumn (gsl_matrix_complex * m,
+                                    const size_t j, const size_t offset,
+                                    const size_t n);
+
+_gsl_matrix_complex_view
+gsl_matrix_complex_view_array (double * base,
+                             const size_t n1, 
+                             const size_t n2);
+
+_gsl_matrix_complex_view
+gsl_matrix_complex_view_array_with_tda (double * base, 
+                                      const size_t n1, 
+                                      const size_t n2,
+                                      const size_t tda);
+
+_gsl_matrix_complex_view
+gsl_matrix_complex_view_vector (gsl_vector_complex * v,
+                              const size_t n1, 
+                              const size_t n2);
+
+_gsl_matrix_complex_view
+gsl_matrix_complex_view_vector_with_tda (gsl_vector_complex * v,
+                                       const size_t n1, 
+                                       const size_t n2,
+                                       const size_t tda);
+
+
+_gsl_matrix_complex_const_view 
+gsl_matrix_complex_const_submatrix (const gsl_matrix_complex * m, 
+                                  const size_t i, const size_t j, 
+                                  const size_t n1, const size_t n2);
+
+_gsl_vector_complex_const_view 
+gsl_matrix_complex_const_row (const gsl_matrix_complex * m, 
+                            const size_t i);
+
+_gsl_vector_complex_const_view 
+gsl_matrix_complex_const_column (const gsl_matrix_complex * m, 
+                               const size_t j);
+
+_gsl_vector_complex_const_view
+gsl_matrix_complex_const_diagonal (const gsl_matrix_complex * m);
+
+_gsl_vector_complex_const_view 
+gsl_matrix_complex_const_subdiagonal (const gsl_matrix_complex * m, 
+                                    const size_t k);
+
+_gsl_vector_complex_const_view 
+gsl_matrix_complex_const_superdiagonal (const gsl_matrix_complex * m, 
+                                      const size_t k);
+
+_gsl_vector_complex_const_view
+gsl_matrix_complex_const_subrow (const gsl_matrix_complex * m,
+                                       const size_t i, const size_t offset,
+                                       const size_t n);
+
+_gsl_vector_complex_const_view
+gsl_matrix_complex_const_subcolumn (const gsl_matrix_complex * m,
+                                          const size_t j, const size_t offset,
+                                          const size_t n);
+
+_gsl_matrix_complex_const_view
+gsl_matrix_complex_const_view_array (const double * base,
+                                   const size_t n1, 
+                                   const size_t n2);
+
+_gsl_matrix_complex_const_view
+gsl_matrix_complex_const_view_array_with_tda (const double * base, 
+                                            const size_t n1, 
+                                            const size_t n2,
+                                            const size_t tda);
+
+_gsl_matrix_complex_const_view
+gsl_matrix_complex_const_view_vector (const gsl_vector_complex * v,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+_gsl_matrix_complex_const_view
+gsl_matrix_complex_const_view_vector_with_tda (const gsl_vector_complex * v,
+                                             const size_t n1, 
+                                             const size_t n2,
+                                             const size_t tda);
+
+/* Operations */
+
+void gsl_matrix_complex_set_zero (gsl_matrix_complex * m);
+void gsl_matrix_complex_set_identity (gsl_matrix_complex * m);
+void gsl_matrix_complex_set_all (gsl_matrix_complex * m, gsl_complex x);
+
+int gsl_matrix_complex_fread (FILE * stream, gsl_matrix_complex * m) ;
+int gsl_matrix_complex_fwrite (FILE * stream, const gsl_matrix_complex * m) ;
+int gsl_matrix_complex_fscanf (FILE * stream, gsl_matrix_complex * m);
+int gsl_matrix_complex_fprintf (FILE * stream, const gsl_matrix_complex * m, const char * format);
+
+int gsl_matrix_complex_memcpy(gsl_matrix_complex * dest, const gsl_matrix_complex * src);
+int gsl_matrix_complex_swap(gsl_matrix_complex * m1, gsl_matrix_complex * m2);
+
+int gsl_matrix_complex_swap_rows(gsl_matrix_complex * m, const size_t i, const size_t j);
+int gsl_matrix_complex_swap_columns(gsl_matrix_complex * m, const size_t i, const size_t j);
+int gsl_matrix_complex_swap_rowcol(gsl_matrix_complex * m, const size_t i, const size_t j);
+
+int gsl_matrix_complex_transpose (gsl_matrix_complex * m);
+int gsl_matrix_complex_transpose_memcpy (gsl_matrix_complex * dest, const gsl_matrix_complex * src);
+
+int gsl_matrix_complex_equal (const gsl_matrix_complex * a, const gsl_matrix_complex * b);
+
+int gsl_matrix_complex_isnull (const gsl_matrix_complex * m);
+int gsl_matrix_complex_ispos (const gsl_matrix_complex * m);
+int gsl_matrix_complex_isneg (const gsl_matrix_complex * m);
+int gsl_matrix_complex_isnonneg (const gsl_matrix_complex * m);
+
+int gsl_matrix_complex_add (gsl_matrix_complex * a, const gsl_matrix_complex * b);
+int gsl_matrix_complex_sub (gsl_matrix_complex * a, const gsl_matrix_complex * b);
+int gsl_matrix_complex_mul_elements (gsl_matrix_complex * a, const gsl_matrix_complex * b);
+int gsl_matrix_complex_div_elements (gsl_matrix_complex * a, const gsl_matrix_complex * b);
+int gsl_matrix_complex_scale (gsl_matrix_complex * a, const gsl_complex x);
+int gsl_matrix_complex_add_constant (gsl_matrix_complex * a, const gsl_complex x);
+int gsl_matrix_complex_add_diagonal (gsl_matrix_complex * a, const gsl_complex x);
+
+/***********************************************************************/
+/* The functions below are obsolete                                    */
+/***********************************************************************/
+int gsl_matrix_complex_get_row(gsl_vector_complex * v, const gsl_matrix_complex * m, const size_t i);
+int gsl_matrix_complex_get_col(gsl_vector_complex * v, const gsl_matrix_complex * m, const size_t j);
+int gsl_matrix_complex_set_row(gsl_matrix_complex * m, const size_t i, const gsl_vector_complex * v);
+int gsl_matrix_complex_set_col(gsl_matrix_complex * m, const size_t j, const gsl_vector_complex * v);
+/***********************************************************************/
+
+/* inline functions if you are using GCC */
+
+INLINE_DECL gsl_complex gsl_matrix_complex_get(const gsl_matrix_complex * m, const size_t i, const size_t j);
+INLINE_DECL void gsl_matrix_complex_set(gsl_matrix_complex * m, const size_t i, const size_t j, const gsl_complex x);
+
+INLINE_DECL gsl_complex * gsl_matrix_complex_ptr(gsl_matrix_complex * m, const size_t i, const size_t j);
+INLINE_DECL const gsl_complex * gsl_matrix_complex_const_ptr(const gsl_matrix_complex * m, const size_t i, const size_t j);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN 
+gsl_complex
+gsl_matrix_complex_get(const gsl_matrix_complex * m, 
+                     const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      gsl_complex zero = {{0,0}};
+
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VAL("first index out of range", GSL_EINVAL, zero) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VAL("second index out of range", GSL_EINVAL, zero) ;
+        }
+    }
+#endif
+  return *(gsl_complex *)(m->data + 2*(i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+void
+gsl_matrix_complex_set(gsl_matrix_complex * m, 
+                     const size_t i, const size_t j, const gsl_complex x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VOID("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VOID("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  *(gsl_complex *)(m->data + 2*(i * m->tda + j)) = x ;
+}
+
+INLINE_FUN 
+gsl_complex *
+gsl_matrix_complex_ptr(gsl_matrix_complex * m, 
+                             const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (gsl_complex *)(m->data + 2*(i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+const gsl_complex *
+gsl_matrix_complex_const_ptr(const gsl_matrix_complex * m, 
+                                   const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (const gsl_complex *)(m->data + 2*(i * m->tda + j)) ;
+} 
+
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_MATRIX_COMPLEX_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix_complex_float.h b/util/X86LINUX64/include/gsl/gsl_matrix_complex_float.h
new file mode 100644 (file)
index 0000000..807ace4
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix_complex_float.h
@@ -0,0 +1,351 @@
+/* matrix/gsl_matrix_complex_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATRIX_COMPLEX_FLOAT_H__
+#define __GSL_MATRIX_COMPLEX_FLOAT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_complex_float.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size1;
+  size_t size2;
+  size_t tda;
+  float * data;
+  gsl_block_complex_float * block;
+  int owner;
+} gsl_matrix_complex_float ;
+
+typedef struct
+{
+  gsl_matrix_complex_float matrix;
+} _gsl_matrix_complex_float_view;
+
+typedef _gsl_matrix_complex_float_view gsl_matrix_complex_float_view;
+
+typedef struct
+{
+  gsl_matrix_complex_float matrix;
+} _gsl_matrix_complex_float_const_view;
+
+typedef const _gsl_matrix_complex_float_const_view gsl_matrix_complex_float_const_view;
+
+
+/* Allocation */
+
+gsl_matrix_complex_float * 
+gsl_matrix_complex_float_alloc (const size_t n1, const size_t n2);
+
+gsl_matrix_complex_float * 
+gsl_matrix_complex_float_calloc (const size_t n1, const size_t n2);
+
+gsl_matrix_complex_float * 
+gsl_matrix_complex_float_alloc_from_block (gsl_block_complex_float * b, 
+                                           const size_t offset, 
+                                           const size_t n1, const size_t n2, const size_t d2);
+
+gsl_matrix_complex_float * 
+gsl_matrix_complex_float_alloc_from_matrix (gsl_matrix_complex_float * b,
+                                            const size_t k1, const size_t k2,
+                                            const size_t n1, const size_t n2);
+
+gsl_vector_complex_float * 
+gsl_vector_complex_float_alloc_row_from_matrix (gsl_matrix_complex_float * m,
+                                                const size_t i);
+
+gsl_vector_complex_float * 
+gsl_vector_complex_float_alloc_col_from_matrix (gsl_matrix_complex_float * m,
+                                                const size_t j);
+
+void gsl_matrix_complex_float_free (gsl_matrix_complex_float * m);
+
+/* Views */
+
+_gsl_matrix_complex_float_view 
+gsl_matrix_complex_float_submatrix (gsl_matrix_complex_float * m, 
+                            const size_t i, const size_t j, 
+                            const size_t n1, const size_t n2);
+
+_gsl_vector_complex_float_view 
+gsl_matrix_complex_float_row (gsl_matrix_complex_float * m, const size_t i);
+
+_gsl_vector_complex_float_view 
+gsl_matrix_complex_float_column (gsl_matrix_complex_float * m, const size_t j);
+
+_gsl_vector_complex_float_view 
+gsl_matrix_complex_float_diagonal (gsl_matrix_complex_float * m);
+
+_gsl_vector_complex_float_view 
+gsl_matrix_complex_float_subdiagonal (gsl_matrix_complex_float * m, const size_t k);
+
+_gsl_vector_complex_float_view 
+gsl_matrix_complex_float_superdiagonal (gsl_matrix_complex_float * m, const size_t k);
+
+_gsl_vector_complex_float_view
+gsl_matrix_complex_float_subrow (gsl_matrix_complex_float * m,
+                                 const size_t i, const size_t offset,
+                                 const size_t n);
+
+_gsl_vector_complex_float_view
+gsl_matrix_complex_float_subcolumn (gsl_matrix_complex_float * m,
+                                    const size_t j, const size_t offset,
+                                    const size_t n);
+
+_gsl_matrix_complex_float_view
+gsl_matrix_complex_float_view_array (float * base,
+                             const size_t n1, 
+                             const size_t n2);
+
+_gsl_matrix_complex_float_view
+gsl_matrix_complex_float_view_array_with_tda (float * base, 
+                                      const size_t n1, 
+                                      const size_t n2,
+                                      const size_t tda);
+
+_gsl_matrix_complex_float_view
+gsl_matrix_complex_float_view_vector (gsl_vector_complex_float * v,
+                              const size_t n1, 
+                              const size_t n2);
+
+_gsl_matrix_complex_float_view
+gsl_matrix_complex_float_view_vector_with_tda (gsl_vector_complex_float * v,
+                                       const size_t n1, 
+                                       const size_t n2,
+                                       const size_t tda);
+
+
+_gsl_matrix_complex_float_const_view 
+gsl_matrix_complex_float_const_submatrix (const gsl_matrix_complex_float * m, 
+                                  const size_t i, const size_t j, 
+                                  const size_t n1, const size_t n2);
+
+_gsl_vector_complex_float_const_view 
+gsl_matrix_complex_float_const_row (const gsl_matrix_complex_float * m, 
+                            const size_t i);
+
+_gsl_vector_complex_float_const_view 
+gsl_matrix_complex_float_const_column (const gsl_matrix_complex_float * m, 
+                               const size_t j);
+
+_gsl_vector_complex_float_const_view
+gsl_matrix_complex_float_const_diagonal (const gsl_matrix_complex_float * m);
+
+_gsl_vector_complex_float_const_view 
+gsl_matrix_complex_float_const_subdiagonal (const gsl_matrix_complex_float * m, 
+                                    const size_t k);
+
+_gsl_vector_complex_float_const_view 
+gsl_matrix_complex_float_const_superdiagonal (const gsl_matrix_complex_float * m, 
+                                      const size_t k);
+
+_gsl_vector_complex_float_const_view
+gsl_matrix_complex_float_const_subrow (const gsl_matrix_complex_float * m,
+                                       const size_t i, const size_t offset,
+                                       const size_t n);
+
+_gsl_vector_complex_float_const_view
+gsl_matrix_complex_float_const_subcolumn (const gsl_matrix_complex_float * m,
+                                          const size_t j, const size_t offset,
+                                          const size_t n);
+
+_gsl_matrix_complex_float_const_view
+gsl_matrix_complex_float_const_view_array (const float * base,
+                                   const size_t n1, 
+                                   const size_t n2);
+
+_gsl_matrix_complex_float_const_view
+gsl_matrix_complex_float_const_view_array_with_tda (const float * base, 
+                                            const size_t n1, 
+                                            const size_t n2,
+                                            const size_t tda);
+
+_gsl_matrix_complex_float_const_view
+gsl_matrix_complex_float_const_view_vector (const gsl_vector_complex_float * v,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+_gsl_matrix_complex_float_const_view
+gsl_matrix_complex_float_const_view_vector_with_tda (const gsl_vector_complex_float * v,
+                                             const size_t n1, 
+                                             const size_t n2,
+                                             const size_t tda);
+
+/* Operations */
+
+void gsl_matrix_complex_float_set_zero (gsl_matrix_complex_float * m);
+void gsl_matrix_complex_float_set_identity (gsl_matrix_complex_float * m);
+void gsl_matrix_complex_float_set_all (gsl_matrix_complex_float * m, gsl_complex_float x);
+
+int gsl_matrix_complex_float_fread (FILE * stream, gsl_matrix_complex_float * m) ;
+int gsl_matrix_complex_float_fwrite (FILE * stream, const gsl_matrix_complex_float * m) ;
+int gsl_matrix_complex_float_fscanf (FILE * stream, gsl_matrix_complex_float * m);
+int gsl_matrix_complex_float_fprintf (FILE * stream, const gsl_matrix_complex_float * m, const char * format);
+
+int gsl_matrix_complex_float_memcpy(gsl_matrix_complex_float * dest, const gsl_matrix_complex_float * src);
+int gsl_matrix_complex_float_swap(gsl_matrix_complex_float * m1, gsl_matrix_complex_float * m2);
+
+int gsl_matrix_complex_float_swap_rows(gsl_matrix_complex_float * m, const size_t i, const size_t j);
+int gsl_matrix_complex_float_swap_columns(gsl_matrix_complex_float * m, const size_t i, const size_t j);
+int gsl_matrix_complex_float_swap_rowcol(gsl_matrix_complex_float * m, const size_t i, const size_t j);
+
+int gsl_matrix_complex_float_transpose (gsl_matrix_complex_float * m);
+int gsl_matrix_complex_float_transpose_memcpy (gsl_matrix_complex_float * dest, const gsl_matrix_complex_float * src);
+
+int gsl_matrix_complex_float_equal (const gsl_matrix_complex_float * a, const gsl_matrix_complex_float * b);
+
+int gsl_matrix_complex_float_isnull (const gsl_matrix_complex_float * m);
+int gsl_matrix_complex_float_ispos (const gsl_matrix_complex_float * m);
+int gsl_matrix_complex_float_isneg (const gsl_matrix_complex_float * m);
+int gsl_matrix_complex_float_isnonneg (const gsl_matrix_complex_float * m);
+
+int gsl_matrix_complex_float_add (gsl_matrix_complex_float * a, const gsl_matrix_complex_float * b);
+int gsl_matrix_complex_float_sub (gsl_matrix_complex_float * a, const gsl_matrix_complex_float * b);
+int gsl_matrix_complex_float_mul_elements (gsl_matrix_complex_float * a, const gsl_matrix_complex_float * b);
+int gsl_matrix_complex_float_div_elements (gsl_matrix_complex_float * a, const gsl_matrix_complex_float * b);
+int gsl_matrix_complex_float_scale (gsl_matrix_complex_float * a, const gsl_complex_float x);
+int gsl_matrix_complex_float_add_constant (gsl_matrix_complex_float * a, const gsl_complex_float x);
+int gsl_matrix_complex_float_add_diagonal (gsl_matrix_complex_float * a, const gsl_complex_float x);
+
+/***********************************************************************/
+/* The functions below are obsolete                                    */
+/***********************************************************************/
+int gsl_matrix_complex_float_get_row(gsl_vector_complex_float * v, const gsl_matrix_complex_float * m, const size_t i);
+int gsl_matrix_complex_float_get_col(gsl_vector_complex_float * v, const gsl_matrix_complex_float * m, const size_t j);
+int gsl_matrix_complex_float_set_row(gsl_matrix_complex_float * m, const size_t i, const gsl_vector_complex_float * v);
+int gsl_matrix_complex_float_set_col(gsl_matrix_complex_float * m, const size_t j, const gsl_vector_complex_float * v);
+/***********************************************************************/
+
+/* inline functions if you are using GCC */
+
+INLINE_DECL gsl_complex_float gsl_matrix_complex_float_get(const gsl_matrix_complex_float * m, const size_t i, const size_t j);
+INLINE_DECL void gsl_matrix_complex_float_set(gsl_matrix_complex_float * m, const size_t i, const size_t j, const gsl_complex_float x);
+
+INLINE_DECL gsl_complex_float * gsl_matrix_complex_float_ptr(gsl_matrix_complex_float * m, const size_t i, const size_t j);
+INLINE_DECL const gsl_complex_float * gsl_matrix_complex_float_const_ptr(const gsl_matrix_complex_float * m, const size_t i, const size_t j);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN 
+gsl_complex_float
+gsl_matrix_complex_float_get(const gsl_matrix_complex_float * m, 
+                     const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      gsl_complex_float zero = {{0,0}};
+
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VAL("first index out of range", GSL_EINVAL, zero) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VAL("second index out of range", GSL_EINVAL, zero) ;
+        }
+    }
+#endif
+  return *(gsl_complex_float *)(m->data + 2*(i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+void
+gsl_matrix_complex_float_set(gsl_matrix_complex_float * m, 
+                     const size_t i, const size_t j, const gsl_complex_float x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VOID("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VOID("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  *(gsl_complex_float *)(m->data + 2*(i * m->tda + j)) = x ;
+}
+
+INLINE_FUN 
+gsl_complex_float *
+gsl_matrix_complex_float_ptr(gsl_matrix_complex_float * m, 
+                             const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (gsl_complex_float *)(m->data + 2*(i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+const gsl_complex_float *
+gsl_matrix_complex_float_const_ptr(const gsl_matrix_complex_float * m, 
+                                   const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (const gsl_complex_float *)(m->data + 2*(i * m->tda + j)) ;
+} 
+
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_MATRIX_COMPLEX_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix_complex_long_double.h b/util/X86LINUX64/include/gsl/gsl_matrix_complex_long_double.h
new file mode 100644 (file)
index 0000000..b68ccb6
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix_complex_long_double.h
@@ -0,0 +1,351 @@
+/* matrix/gsl_matrix_complex_long_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATRIX_COMPLEX_LONG_DOUBLE_H__
+#define __GSL_MATRIX_COMPLEX_LONG_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_complex_long_double.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size1;
+  size_t size2;
+  size_t tda;
+  long double * data;
+  gsl_block_complex_long_double * block;
+  int owner;
+} gsl_matrix_complex_long_double ;
+
+typedef struct
+{
+  gsl_matrix_complex_long_double matrix;
+} _gsl_matrix_complex_long_double_view;
+
+typedef _gsl_matrix_complex_long_double_view gsl_matrix_complex_long_double_view;
+
+typedef struct
+{
+  gsl_matrix_complex_long_double matrix;
+} _gsl_matrix_complex_long_double_const_view;
+
+typedef const _gsl_matrix_complex_long_double_const_view gsl_matrix_complex_long_double_const_view;
+
+
+/* Allocation */
+
+gsl_matrix_complex_long_double * 
+gsl_matrix_complex_long_double_alloc (const size_t n1, const size_t n2);
+
+gsl_matrix_complex_long_double * 
+gsl_matrix_complex_long_double_calloc (const size_t n1, const size_t n2);
+
+gsl_matrix_complex_long_double * 
+gsl_matrix_complex_long_double_alloc_from_block (gsl_block_complex_long_double * b, 
+                                           const size_t offset, 
+                                           const size_t n1, const size_t n2, const size_t d2);
+
+gsl_matrix_complex_long_double * 
+gsl_matrix_complex_long_double_alloc_from_matrix (gsl_matrix_complex_long_double * b,
+                                            const size_t k1, const size_t k2,
+                                            const size_t n1, const size_t n2);
+
+gsl_vector_complex_long_double * 
+gsl_vector_complex_long_double_alloc_row_from_matrix (gsl_matrix_complex_long_double * m,
+                                                const size_t i);
+
+gsl_vector_complex_long_double * 
+gsl_vector_complex_long_double_alloc_col_from_matrix (gsl_matrix_complex_long_double * m,
+                                                const size_t j);
+
+void gsl_matrix_complex_long_double_free (gsl_matrix_complex_long_double * m);
+
+/* Views */
+
+_gsl_matrix_complex_long_double_view 
+gsl_matrix_complex_long_double_submatrix (gsl_matrix_complex_long_double * m, 
+                            const size_t i, const size_t j, 
+                            const size_t n1, const size_t n2);
+
+_gsl_vector_complex_long_double_view 
+gsl_matrix_complex_long_double_row (gsl_matrix_complex_long_double * m, const size_t i);
+
+_gsl_vector_complex_long_double_view 
+gsl_matrix_complex_long_double_column (gsl_matrix_complex_long_double * m, const size_t j);
+
+_gsl_vector_complex_long_double_view 
+gsl_matrix_complex_long_double_diagonal (gsl_matrix_complex_long_double * m);
+
+_gsl_vector_complex_long_double_view 
+gsl_matrix_complex_long_double_subdiagonal (gsl_matrix_complex_long_double * m, const size_t k);
+
+_gsl_vector_complex_long_double_view 
+gsl_matrix_complex_long_double_superdiagonal (gsl_matrix_complex_long_double * m, const size_t k);
+
+_gsl_vector_complex_long_double_view
+gsl_matrix_complex_long_double_subrow (gsl_matrix_complex_long_double * m,
+                                 const size_t i, const size_t offset,
+                                 const size_t n);
+
+_gsl_vector_complex_long_double_view
+gsl_matrix_complex_long_double_subcolumn (gsl_matrix_complex_long_double * m,
+                                    const size_t j, const size_t offset,
+                                    const size_t n);
+
+_gsl_matrix_complex_long_double_view
+gsl_matrix_complex_long_double_view_array (long double * base,
+                             const size_t n1, 
+                             const size_t n2);
+
+_gsl_matrix_complex_long_double_view
+gsl_matrix_complex_long_double_view_array_with_tda (long double * base, 
+                                      const size_t n1, 
+                                      const size_t n2,
+                                      const size_t tda);
+
+_gsl_matrix_complex_long_double_view
+gsl_matrix_complex_long_double_view_vector (gsl_vector_complex_long_double * v,
+                              const size_t n1, 
+                              const size_t n2);
+
+_gsl_matrix_complex_long_double_view
+gsl_matrix_complex_long_double_view_vector_with_tda (gsl_vector_complex_long_double * v,
+                                       const size_t n1, 
+                                       const size_t n2,
+                                       const size_t tda);
+
+
+_gsl_matrix_complex_long_double_const_view 
+gsl_matrix_complex_long_double_const_submatrix (const gsl_matrix_complex_long_double * m, 
+                                  const size_t i, const size_t j, 
+                                  const size_t n1, const size_t n2);
+
+_gsl_vector_complex_long_double_const_view 
+gsl_matrix_complex_long_double_const_row (const gsl_matrix_complex_long_double * m, 
+                            const size_t i);
+
+_gsl_vector_complex_long_double_const_view 
+gsl_matrix_complex_long_double_const_column (const gsl_matrix_complex_long_double * m, 
+                               const size_t j);
+
+_gsl_vector_complex_long_double_const_view
+gsl_matrix_complex_long_double_const_diagonal (const gsl_matrix_complex_long_double * m);
+
+_gsl_vector_complex_long_double_const_view 
+gsl_matrix_complex_long_double_const_subdiagonal (const gsl_matrix_complex_long_double * m, 
+                                    const size_t k);
+
+_gsl_vector_complex_long_double_const_view 
+gsl_matrix_complex_long_double_const_superdiagonal (const gsl_matrix_complex_long_double * m, 
+                                      const size_t k);
+
+_gsl_vector_complex_long_double_const_view
+gsl_matrix_complex_long_double_const_subrow (const gsl_matrix_complex_long_double * m,
+                                       const size_t i, const size_t offset,
+                                       const size_t n);
+
+_gsl_vector_complex_long_double_const_view
+gsl_matrix_complex_long_double_const_subcolumn (const gsl_matrix_complex_long_double * m,
+                                          const size_t j, const size_t offset,
+                                          const size_t n);
+
+_gsl_matrix_complex_long_double_const_view
+gsl_matrix_complex_long_double_const_view_array (const long double * base,
+                                   const size_t n1, 
+                                   const size_t n2);
+
+_gsl_matrix_complex_long_double_const_view
+gsl_matrix_complex_long_double_const_view_array_with_tda (const long double * base, 
+                                            const size_t n1, 
+                                            const size_t n2,
+                                            const size_t tda);
+
+_gsl_matrix_complex_long_double_const_view
+gsl_matrix_complex_long_double_const_view_vector (const gsl_vector_complex_long_double * v,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+_gsl_matrix_complex_long_double_const_view
+gsl_matrix_complex_long_double_const_view_vector_with_tda (const gsl_vector_complex_long_double * v,
+                                             const size_t n1, 
+                                             const size_t n2,
+                                             const size_t tda);
+
+/* Operations */
+
+void gsl_matrix_complex_long_double_set_zero (gsl_matrix_complex_long_double * m);
+void gsl_matrix_complex_long_double_set_identity (gsl_matrix_complex_long_double * m);
+void gsl_matrix_complex_long_double_set_all (gsl_matrix_complex_long_double * m, gsl_complex_long_double x);
+
+int gsl_matrix_complex_long_double_fread (FILE * stream, gsl_matrix_complex_long_double * m) ;
+int gsl_matrix_complex_long_double_fwrite (FILE * stream, const gsl_matrix_complex_long_double * m) ;
+int gsl_matrix_complex_long_double_fscanf (FILE * stream, gsl_matrix_complex_long_double * m);
+int gsl_matrix_complex_long_double_fprintf (FILE * stream, const gsl_matrix_complex_long_double * m, const char * format);
+
+int gsl_matrix_complex_long_double_memcpy(gsl_matrix_complex_long_double * dest, const gsl_matrix_complex_long_double * src);
+int gsl_matrix_complex_long_double_swap(gsl_matrix_complex_long_double * m1, gsl_matrix_complex_long_double * m2);
+
+int gsl_matrix_complex_long_double_swap_rows(gsl_matrix_complex_long_double * m, const size_t i, const size_t j);
+int gsl_matrix_complex_long_double_swap_columns(gsl_matrix_complex_long_double * m, const size_t i, const size_t j);
+int gsl_matrix_complex_long_double_swap_rowcol(gsl_matrix_complex_long_double * m, const size_t i, const size_t j);
+
+int gsl_matrix_complex_long_double_transpose (gsl_matrix_complex_long_double * m);
+int gsl_matrix_complex_long_double_transpose_memcpy (gsl_matrix_complex_long_double * dest, const gsl_matrix_complex_long_double * src);
+
+int gsl_matrix_complex_long_double_equal (const gsl_matrix_complex_long_double * a, const gsl_matrix_complex_long_double * b);
+
+int gsl_matrix_complex_long_double_isnull (const gsl_matrix_complex_long_double * m);
+int gsl_matrix_complex_long_double_ispos (const gsl_matrix_complex_long_double * m);
+int gsl_matrix_complex_long_double_isneg (const gsl_matrix_complex_long_double * m);
+int gsl_matrix_complex_long_double_isnonneg (const gsl_matrix_complex_long_double * m);
+
+int gsl_matrix_complex_long_double_add (gsl_matrix_complex_long_double * a, const gsl_matrix_complex_long_double * b);
+int gsl_matrix_complex_long_double_sub (gsl_matrix_complex_long_double * a, const gsl_matrix_complex_long_double * b);
+int gsl_matrix_complex_long_double_mul_elements (gsl_matrix_complex_long_double * a, const gsl_matrix_complex_long_double * b);
+int gsl_matrix_complex_long_double_div_elements (gsl_matrix_complex_long_double * a, const gsl_matrix_complex_long_double * b);
+int gsl_matrix_complex_long_double_scale (gsl_matrix_complex_long_double * a, const gsl_complex_long_double x);
+int gsl_matrix_complex_long_double_add_constant (gsl_matrix_complex_long_double * a, const gsl_complex_long_double x);
+int gsl_matrix_complex_long_double_add_diagonal (gsl_matrix_complex_long_double * a, const gsl_complex_long_double x);
+
+/***********************************************************************/
+/* The functions below are obsolete                                    */
+/***********************************************************************/
+int gsl_matrix_complex_long_double_get_row(gsl_vector_complex_long_double * v, const gsl_matrix_complex_long_double * m, const size_t i);
+int gsl_matrix_complex_long_double_get_col(gsl_vector_complex_long_double * v, const gsl_matrix_complex_long_double * m, const size_t j);
+int gsl_matrix_complex_long_double_set_row(gsl_matrix_complex_long_double * m, const size_t i, const gsl_vector_complex_long_double * v);
+int gsl_matrix_complex_long_double_set_col(gsl_matrix_complex_long_double * m, const size_t j, const gsl_vector_complex_long_double * v);
+/***********************************************************************/
+
+/* inline functions if you are using GCC */
+
+INLINE_DECL gsl_complex_long_double gsl_matrix_complex_long_double_get(const gsl_matrix_complex_long_double * m, const size_t i, const size_t j);
+INLINE_DECL void gsl_matrix_complex_long_double_set(gsl_matrix_complex_long_double * m, const size_t i, const size_t j, const gsl_complex_long_double x);
+
+INLINE_DECL gsl_complex_long_double * gsl_matrix_complex_long_double_ptr(gsl_matrix_complex_long_double * m, const size_t i, const size_t j);
+INLINE_DECL const gsl_complex_long_double * gsl_matrix_complex_long_double_const_ptr(const gsl_matrix_complex_long_double * m, const size_t i, const size_t j);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN 
+gsl_complex_long_double
+gsl_matrix_complex_long_double_get(const gsl_matrix_complex_long_double * m, 
+                     const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      gsl_complex_long_double zero = {{0,0}};
+
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VAL("first index out of range", GSL_EINVAL, zero) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VAL("second index out of range", GSL_EINVAL, zero) ;
+        }
+    }
+#endif
+  return *(gsl_complex_long_double *)(m->data + 2*(i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+void
+gsl_matrix_complex_long_double_set(gsl_matrix_complex_long_double * m, 
+                     const size_t i, const size_t j, const gsl_complex_long_double x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VOID("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VOID("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  *(gsl_complex_long_double *)(m->data + 2*(i * m->tda + j)) = x ;
+}
+
+INLINE_FUN 
+gsl_complex_long_double *
+gsl_matrix_complex_long_double_ptr(gsl_matrix_complex_long_double * m, 
+                             const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (gsl_complex_long_double *)(m->data + 2*(i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+const gsl_complex_long_double *
+gsl_matrix_complex_long_double_const_ptr(const gsl_matrix_complex_long_double * m, 
+                                   const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (const gsl_complex_long_double *)(m->data + 2*(i * m->tda + j)) ;
+} 
+
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_MATRIX_COMPLEX_LONG_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix_double.h b/util/X86LINUX64/include/gsl/gsl_matrix_double.h
new file mode 100644 (file)
index 0000000..6356695
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix_double.h
@@ -0,0 +1,350 @@
+/* matrix/gsl_matrix_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATRIX_DOUBLE_H__
+#define __GSL_MATRIX_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_double.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size1;
+  size_t size2;
+  size_t tda;
+  double * data;
+  gsl_block * block;
+  int owner;
+} gsl_matrix;
+
+typedef struct
+{
+  gsl_matrix matrix;
+} _gsl_matrix_view;
+
+typedef _gsl_matrix_view gsl_matrix_view;
+
+typedef struct
+{
+  gsl_matrix matrix;
+} _gsl_matrix_const_view;
+
+typedef const _gsl_matrix_const_view gsl_matrix_const_view;
+
+/* Allocation */
+
+gsl_matrix * 
+gsl_matrix_alloc (const size_t n1, const size_t n2);
+
+gsl_matrix * 
+gsl_matrix_calloc (const size_t n1, const size_t n2);
+
+gsl_matrix * 
+gsl_matrix_alloc_from_block (gsl_block * b, 
+                                   const size_t offset, 
+                                   const size_t n1, 
+                                   const size_t n2, 
+                                   const size_t d2);
+
+gsl_matrix * 
+gsl_matrix_alloc_from_matrix (gsl_matrix * m,
+                                    const size_t k1, 
+                                    const size_t k2,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+gsl_vector * 
+gsl_vector_alloc_row_from_matrix (gsl_matrix * m,
+                                        const size_t i);
+
+gsl_vector * 
+gsl_vector_alloc_col_from_matrix (gsl_matrix * m,
+                                        const size_t j);
+
+void gsl_matrix_free (gsl_matrix * m);
+
+/* Views */
+
+_gsl_matrix_view 
+gsl_matrix_submatrix (gsl_matrix * m, 
+                            const size_t i, const size_t j, 
+                            const size_t n1, const size_t n2);
+
+_gsl_vector_view 
+gsl_matrix_row (gsl_matrix * m, const size_t i);
+
+_gsl_vector_view 
+gsl_matrix_column (gsl_matrix * m, const size_t j);
+
+_gsl_vector_view 
+gsl_matrix_diagonal (gsl_matrix * m);
+
+_gsl_vector_view 
+gsl_matrix_subdiagonal (gsl_matrix * m, const size_t k);
+
+_gsl_vector_view 
+gsl_matrix_superdiagonal (gsl_matrix * m, const size_t k);
+
+_gsl_vector_view
+gsl_matrix_subrow (gsl_matrix * m, const size_t i,
+                         const size_t offset, const size_t n);
+
+_gsl_vector_view
+gsl_matrix_subcolumn (gsl_matrix * m, const size_t j,
+                            const size_t offset, const size_t n);
+
+_gsl_matrix_view
+gsl_matrix_view_array (double * base,
+                             const size_t n1, 
+                             const size_t n2);
+
+_gsl_matrix_view
+gsl_matrix_view_array_with_tda (double * base, 
+                                      const size_t n1, 
+                                      const size_t n2,
+                                      const size_t tda);
+
+
+_gsl_matrix_view
+gsl_matrix_view_vector (gsl_vector * v,
+                              const size_t n1, 
+                              const size_t n2);
+
+_gsl_matrix_view
+gsl_matrix_view_vector_with_tda (gsl_vector * v,
+                                       const size_t n1, 
+                                       const size_t n2,
+                                       const size_t tda);
+
+
+_gsl_matrix_const_view 
+gsl_matrix_const_submatrix (const gsl_matrix * m, 
+                                  const size_t i, const size_t j, 
+                                  const size_t n1, const size_t n2);
+
+_gsl_vector_const_view 
+gsl_matrix_const_row (const gsl_matrix * m, 
+                            const size_t i);
+
+_gsl_vector_const_view 
+gsl_matrix_const_column (const gsl_matrix * m, 
+                               const size_t j);
+
+_gsl_vector_const_view
+gsl_matrix_const_diagonal (const gsl_matrix * m);
+
+_gsl_vector_const_view 
+gsl_matrix_const_subdiagonal (const gsl_matrix * m, 
+                                    const size_t k);
+
+_gsl_vector_const_view 
+gsl_matrix_const_superdiagonal (const gsl_matrix * m, 
+                                      const size_t k);
+
+_gsl_vector_const_view
+gsl_matrix_const_subrow (const gsl_matrix * m, const size_t i,
+                               const size_t offset, const size_t n);
+
+_gsl_vector_const_view
+gsl_matrix_const_subcolumn (const gsl_matrix * m, const size_t j,
+                                  const size_t offset, const size_t n);
+
+_gsl_matrix_const_view
+gsl_matrix_const_view_array (const double * base,
+                                   const size_t n1, 
+                                   const size_t n2);
+
+_gsl_matrix_const_view
+gsl_matrix_const_view_array_with_tda (const double * base, 
+                                            const size_t n1, 
+                                            const size_t n2,
+                                            const size_t tda);
+
+_gsl_matrix_const_view
+gsl_matrix_const_view_vector (const gsl_vector * v,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+_gsl_matrix_const_view
+gsl_matrix_const_view_vector_with_tda (const gsl_vector * v,
+                                             const size_t n1, 
+                                             const size_t n2,
+                                             const size_t tda);
+
+/* Operations */
+
+void gsl_matrix_set_zero (gsl_matrix * m);
+void gsl_matrix_set_identity (gsl_matrix * m);
+void gsl_matrix_set_all (gsl_matrix * m, double x);
+
+int gsl_matrix_fread (FILE * stream, gsl_matrix * m) ;
+int gsl_matrix_fwrite (FILE * stream, const gsl_matrix * m) ;
+int gsl_matrix_fscanf (FILE * stream, gsl_matrix * m);
+int gsl_matrix_fprintf (FILE * stream, const gsl_matrix * m, const char * format);
+ 
+int gsl_matrix_memcpy(gsl_matrix * dest, const gsl_matrix * src);
+int gsl_matrix_swap(gsl_matrix * m1, gsl_matrix * m2);
+
+int gsl_matrix_swap_rows(gsl_matrix * m, const size_t i, const size_t j);
+int gsl_matrix_swap_columns(gsl_matrix * m, const size_t i, const size_t j);
+int gsl_matrix_swap_rowcol(gsl_matrix * m, const size_t i, const size_t j);
+int gsl_matrix_transpose (gsl_matrix * m);
+int gsl_matrix_transpose_memcpy (gsl_matrix * dest, const gsl_matrix * src);
+
+double gsl_matrix_max (const gsl_matrix * m);
+double gsl_matrix_min (const gsl_matrix * m);
+void gsl_matrix_minmax (const gsl_matrix * m, double * min_out, double * max_out);
+
+void gsl_matrix_max_index (const gsl_matrix * m, size_t * imax, size_t *jmax);
+void gsl_matrix_min_index (const gsl_matrix * m, size_t * imin, size_t *jmin);
+void gsl_matrix_minmax_index (const gsl_matrix * m, size_t * imin, size_t * jmin, size_t * imax, size_t * jmax);
+
+int gsl_matrix_equal (const gsl_matrix * a, const gsl_matrix * b);
+
+int gsl_matrix_isnull (const gsl_matrix * m);
+int gsl_matrix_ispos (const gsl_matrix * m);
+int gsl_matrix_isneg (const gsl_matrix * m);
+int gsl_matrix_isnonneg (const gsl_matrix * m);
+
+int gsl_matrix_add (gsl_matrix * a, const gsl_matrix * b);
+int gsl_matrix_sub (gsl_matrix * a, const gsl_matrix * b);
+int gsl_matrix_mul_elements (gsl_matrix * a, const gsl_matrix * b);
+int gsl_matrix_div_elements (gsl_matrix * a, const gsl_matrix * b);
+int gsl_matrix_scale (gsl_matrix * a, const double x);
+int gsl_matrix_add_constant (gsl_matrix * a, const double x);
+int gsl_matrix_add_diagonal (gsl_matrix * a, const double x);
+
+/***********************************************************************/
+/* The functions below are obsolete                                    */
+/***********************************************************************/
+int gsl_matrix_get_row(gsl_vector * v, const gsl_matrix * m, const size_t i);
+int gsl_matrix_get_col(gsl_vector * v, const gsl_matrix * m, const size_t j);
+int gsl_matrix_set_row(gsl_matrix * m, const size_t i, const gsl_vector * v);
+int gsl_matrix_set_col(gsl_matrix * m, const size_t j, const gsl_vector * v);
+/***********************************************************************/
+
+/* inline functions if you are using GCC */
+
+INLINE_DECL double   gsl_matrix_get(const gsl_matrix * m, const size_t i, const size_t j);
+INLINE_DECL void    gsl_matrix_set(gsl_matrix * m, const size_t i, const size_t j, const double x);
+INLINE_DECL double * gsl_matrix_ptr(gsl_matrix * m, const size_t i, const size_t j);
+INLINE_DECL const double * gsl_matrix_const_ptr(const gsl_matrix * m, const size_t i, const size_t j);
+
+#ifdef HAVE_INLINE
+INLINE_FUN 
+double
+gsl_matrix_get(const gsl_matrix * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VAL("first index out of range", GSL_EINVAL, 0) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VAL("second index out of range", GSL_EINVAL, 0) ;
+        }
+    }
+#endif
+  return m->data[i * m->tda + j] ;
+} 
+
+INLINE_FUN 
+void
+gsl_matrix_set(gsl_matrix * m, const size_t i, const size_t j, const double x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VOID("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VOID("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  m->data[i * m->tda + j] = x ;
+}
+
+INLINE_FUN 
+double *
+gsl_matrix_ptr(gsl_matrix * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (double *) (m->data + (i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+const double *
+gsl_matrix_const_ptr(const gsl_matrix * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (const double *) (m->data + (i * m->tda + j)) ;
+} 
+
+#endif
+
+__END_DECLS
+
+#endif /* __GSL_MATRIX_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix_float.h b/util/X86LINUX64/include/gsl/gsl_matrix_float.h
new file mode 100644 (file)
index 0000000..a91114c
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix_float.h
@@ -0,0 +1,350 @@
+/* matrix/gsl_matrix_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATRIX_FLOAT_H__
+#define __GSL_MATRIX_FLOAT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_float.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size1;
+  size_t size2;
+  size_t tda;
+  float * data;
+  gsl_block_float * block;
+  int owner;
+} gsl_matrix_float;
+
+typedef struct
+{
+  gsl_matrix_float matrix;
+} _gsl_matrix_float_view;
+
+typedef _gsl_matrix_float_view gsl_matrix_float_view;
+
+typedef struct
+{
+  gsl_matrix_float matrix;
+} _gsl_matrix_float_const_view;
+
+typedef const _gsl_matrix_float_const_view gsl_matrix_float_const_view;
+
+/* Allocation */
+
+gsl_matrix_float * 
+gsl_matrix_float_alloc (const size_t n1, const size_t n2);
+
+gsl_matrix_float * 
+gsl_matrix_float_calloc (const size_t n1, const size_t n2);
+
+gsl_matrix_float * 
+gsl_matrix_float_alloc_from_block (gsl_block_float * b, 
+                                   const size_t offset, 
+                                   const size_t n1, 
+                                   const size_t n2, 
+                                   const size_t d2);
+
+gsl_matrix_float * 
+gsl_matrix_float_alloc_from_matrix (gsl_matrix_float * m,
+                                    const size_t k1, 
+                                    const size_t k2,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+gsl_vector_float * 
+gsl_vector_float_alloc_row_from_matrix (gsl_matrix_float * m,
+                                        const size_t i);
+
+gsl_vector_float * 
+gsl_vector_float_alloc_col_from_matrix (gsl_matrix_float * m,
+                                        const size_t j);
+
+void gsl_matrix_float_free (gsl_matrix_float * m);
+
+/* Views */
+
+_gsl_matrix_float_view 
+gsl_matrix_float_submatrix (gsl_matrix_float * m, 
+                            const size_t i, const size_t j, 
+                            const size_t n1, const size_t n2);
+
+_gsl_vector_float_view 
+gsl_matrix_float_row (gsl_matrix_float * m, const size_t i);
+
+_gsl_vector_float_view 
+gsl_matrix_float_column (gsl_matrix_float * m, const size_t j);
+
+_gsl_vector_float_view 
+gsl_matrix_float_diagonal (gsl_matrix_float * m);
+
+_gsl_vector_float_view 
+gsl_matrix_float_subdiagonal (gsl_matrix_float * m, const size_t k);
+
+_gsl_vector_float_view 
+gsl_matrix_float_superdiagonal (gsl_matrix_float * m, const size_t k);
+
+_gsl_vector_float_view
+gsl_matrix_float_subrow (gsl_matrix_float * m, const size_t i,
+                         const size_t offset, const size_t n);
+
+_gsl_vector_float_view
+gsl_matrix_float_subcolumn (gsl_matrix_float * m, const size_t j,
+                            const size_t offset, const size_t n);
+
+_gsl_matrix_float_view
+gsl_matrix_float_view_array (float * base,
+                             const size_t n1, 
+                             const size_t n2);
+
+_gsl_matrix_float_view
+gsl_matrix_float_view_array_with_tda (float * base, 
+                                      const size_t n1, 
+                                      const size_t n2,
+                                      const size_t tda);
+
+
+_gsl_matrix_float_view
+gsl_matrix_float_view_vector (gsl_vector_float * v,
+                              const size_t n1, 
+                              const size_t n2);
+
+_gsl_matrix_float_view
+gsl_matrix_float_view_vector_with_tda (gsl_vector_float * v,
+                                       const size_t n1, 
+                                       const size_t n2,
+                                       const size_t tda);
+
+
+_gsl_matrix_float_const_view 
+gsl_matrix_float_const_submatrix (const gsl_matrix_float * m, 
+                                  const size_t i, const size_t j, 
+                                  const size_t n1, const size_t n2);
+
+_gsl_vector_float_const_view 
+gsl_matrix_float_const_row (const gsl_matrix_float * m, 
+                            const size_t i);
+
+_gsl_vector_float_const_view 
+gsl_matrix_float_const_column (const gsl_matrix_float * m, 
+                               const size_t j);
+
+_gsl_vector_float_const_view
+gsl_matrix_float_const_diagonal (const gsl_matrix_float * m);
+
+_gsl_vector_float_const_view 
+gsl_matrix_float_const_subdiagonal (const gsl_matrix_float * m, 
+                                    const size_t k);
+
+_gsl_vector_float_const_view 
+gsl_matrix_float_const_superdiagonal (const gsl_matrix_float * m, 
+                                      const size_t k);
+
+_gsl_vector_float_const_view
+gsl_matrix_float_const_subrow (const gsl_matrix_float * m, const size_t i,
+                               const size_t offset, const size_t n);
+
+_gsl_vector_float_const_view
+gsl_matrix_float_const_subcolumn (const gsl_matrix_float * m, const size_t j,
+                                  const size_t offset, const size_t n);
+
+_gsl_matrix_float_const_view
+gsl_matrix_float_const_view_array (const float * base,
+                                   const size_t n1, 
+                                   const size_t n2);
+
+_gsl_matrix_float_const_view
+gsl_matrix_float_const_view_array_with_tda (const float * base, 
+                                            const size_t n1, 
+                                            const size_t n2,
+                                            const size_t tda);
+
+_gsl_matrix_float_const_view
+gsl_matrix_float_const_view_vector (const gsl_vector_float * v,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+_gsl_matrix_float_const_view
+gsl_matrix_float_const_view_vector_with_tda (const gsl_vector_float * v,
+                                             const size_t n1, 
+                                             const size_t n2,
+                                             const size_t tda);
+
+/* Operations */
+
+void gsl_matrix_float_set_zero (gsl_matrix_float * m);
+void gsl_matrix_float_set_identity (gsl_matrix_float * m);
+void gsl_matrix_float_set_all (gsl_matrix_float * m, float x);
+
+int gsl_matrix_float_fread (FILE * stream, gsl_matrix_float * m) ;
+int gsl_matrix_float_fwrite (FILE * stream, const gsl_matrix_float * m) ;
+int gsl_matrix_float_fscanf (FILE * stream, gsl_matrix_float * m);
+int gsl_matrix_float_fprintf (FILE * stream, const gsl_matrix_float * m, const char * format);
+ 
+int gsl_matrix_float_memcpy(gsl_matrix_float * dest, const gsl_matrix_float * src);
+int gsl_matrix_float_swap(gsl_matrix_float * m1, gsl_matrix_float * m2);
+
+int gsl_matrix_float_swap_rows(gsl_matrix_float * m, const size_t i, const size_t j);
+int gsl_matrix_float_swap_columns(gsl_matrix_float * m, const size_t i, const size_t j);
+int gsl_matrix_float_swap_rowcol(gsl_matrix_float * m, const size_t i, const size_t j);
+int gsl_matrix_float_transpose (gsl_matrix_float * m);
+int gsl_matrix_float_transpose_memcpy (gsl_matrix_float * dest, const gsl_matrix_float * src);
+
+float gsl_matrix_float_max (const gsl_matrix_float * m);
+float gsl_matrix_float_min (const gsl_matrix_float * m);
+void gsl_matrix_float_minmax (const gsl_matrix_float * m, float * min_out, float * max_out);
+
+void gsl_matrix_float_max_index (const gsl_matrix_float * m, size_t * imax, size_t *jmax);
+void gsl_matrix_float_min_index (const gsl_matrix_float * m, size_t * imin, size_t *jmin);
+void gsl_matrix_float_minmax_index (const gsl_matrix_float * m, size_t * imin, size_t * jmin, size_t * imax, size_t * jmax);
+
+int gsl_matrix_float_equal (const gsl_matrix_float * a, const gsl_matrix_float * b);
+
+int gsl_matrix_float_isnull (const gsl_matrix_float * m);
+int gsl_matrix_float_ispos (const gsl_matrix_float * m);
+int gsl_matrix_float_isneg (const gsl_matrix_float * m);
+int gsl_matrix_float_isnonneg (const gsl_matrix_float * m);
+
+int gsl_matrix_float_add (gsl_matrix_float * a, const gsl_matrix_float * b);
+int gsl_matrix_float_sub (gsl_matrix_float * a, const gsl_matrix_float * b);
+int gsl_matrix_float_mul_elements (gsl_matrix_float * a, const gsl_matrix_float * b);
+int gsl_matrix_float_div_elements (gsl_matrix_float * a, const gsl_matrix_float * b);
+int gsl_matrix_float_scale (gsl_matrix_float * a, const double x);
+int gsl_matrix_float_add_constant (gsl_matrix_float * a, const double x);
+int gsl_matrix_float_add_diagonal (gsl_matrix_float * a, const double x);
+
+/***********************************************************************/
+/* The functions below are obsolete                                    */
+/***********************************************************************/
+int gsl_matrix_float_get_row(gsl_vector_float * v, const gsl_matrix_float * m, const size_t i);
+int gsl_matrix_float_get_col(gsl_vector_float * v, const gsl_matrix_float * m, const size_t j);
+int gsl_matrix_float_set_row(gsl_matrix_float * m, const size_t i, const gsl_vector_float * v);
+int gsl_matrix_float_set_col(gsl_matrix_float * m, const size_t j, const gsl_vector_float * v);
+/***********************************************************************/
+
+/* inline functions if you are using GCC */
+
+INLINE_DECL float   gsl_matrix_float_get(const gsl_matrix_float * m, const size_t i, const size_t j);
+INLINE_DECL void    gsl_matrix_float_set(gsl_matrix_float * m, const size_t i, const size_t j, const float x);
+INLINE_DECL float * gsl_matrix_float_ptr(gsl_matrix_float * m, const size_t i, const size_t j);
+INLINE_DECL const float * gsl_matrix_float_const_ptr(const gsl_matrix_float * m, const size_t i, const size_t j);
+
+#ifdef HAVE_INLINE
+INLINE_FUN 
+float
+gsl_matrix_float_get(const gsl_matrix_float * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VAL("first index out of range", GSL_EINVAL, 0) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VAL("second index out of range", GSL_EINVAL, 0) ;
+        }
+    }
+#endif
+  return m->data[i * m->tda + j] ;
+} 
+
+INLINE_FUN 
+void
+gsl_matrix_float_set(gsl_matrix_float * m, const size_t i, const size_t j, const float x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VOID("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VOID("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  m->data[i * m->tda + j] = x ;
+}
+
+INLINE_FUN 
+float *
+gsl_matrix_float_ptr(gsl_matrix_float * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (float *) (m->data + (i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+const float *
+gsl_matrix_float_const_ptr(const gsl_matrix_float * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (const float *) (m->data + (i * m->tda + j)) ;
+} 
+
+#endif
+
+__END_DECLS
+
+#endif /* __GSL_MATRIX_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix_int.h b/util/X86LINUX64/include/gsl/gsl_matrix_int.h
new file mode 100644 (file)
index 0000000..a9b04c1
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix_int.h
@@ -0,0 +1,350 @@
+/* matrix/gsl_matrix_int.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATRIX_INT_H__
+#define __GSL_MATRIX_INT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_int.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size1;
+  size_t size2;
+  size_t tda;
+  int * data;
+  gsl_block_int * block;
+  int owner;
+} gsl_matrix_int;
+
+typedef struct
+{
+  gsl_matrix_int matrix;
+} _gsl_matrix_int_view;
+
+typedef _gsl_matrix_int_view gsl_matrix_int_view;
+
+typedef struct
+{
+  gsl_matrix_int matrix;
+} _gsl_matrix_int_const_view;
+
+typedef const _gsl_matrix_int_const_view gsl_matrix_int_const_view;
+
+/* Allocation */
+
+gsl_matrix_int * 
+gsl_matrix_int_alloc (const size_t n1, const size_t n2);
+
+gsl_matrix_int * 
+gsl_matrix_int_calloc (const size_t n1, const size_t n2);
+
+gsl_matrix_int * 
+gsl_matrix_int_alloc_from_block (gsl_block_int * b, 
+                                   const size_t offset, 
+                                   const size_t n1, 
+                                   const size_t n2, 
+                                   const size_t d2);
+
+gsl_matrix_int * 
+gsl_matrix_int_alloc_from_matrix (gsl_matrix_int * m,
+                                    const size_t k1, 
+                                    const size_t k2,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+gsl_vector_int * 
+gsl_vector_int_alloc_row_from_matrix (gsl_matrix_int * m,
+                                        const size_t i);
+
+gsl_vector_int * 
+gsl_vector_int_alloc_col_from_matrix (gsl_matrix_int * m,
+                                        const size_t j);
+
+void gsl_matrix_int_free (gsl_matrix_int * m);
+
+/* Views */
+
+_gsl_matrix_int_view 
+gsl_matrix_int_submatrix (gsl_matrix_int * m, 
+                            const size_t i, const size_t j, 
+                            const size_t n1, const size_t n2);
+
+_gsl_vector_int_view 
+gsl_matrix_int_row (gsl_matrix_int * m, const size_t i);
+
+_gsl_vector_int_view 
+gsl_matrix_int_column (gsl_matrix_int * m, const size_t j);
+
+_gsl_vector_int_view 
+gsl_matrix_int_diagonal (gsl_matrix_int * m);
+
+_gsl_vector_int_view 
+gsl_matrix_int_subdiagonal (gsl_matrix_int * m, const size_t k);
+
+_gsl_vector_int_view 
+gsl_matrix_int_superdiagonal (gsl_matrix_int * m, const size_t k);
+
+_gsl_vector_int_view
+gsl_matrix_int_subrow (gsl_matrix_int * m, const size_t i,
+                         const size_t offset, const size_t n);
+
+_gsl_vector_int_view
+gsl_matrix_int_subcolumn (gsl_matrix_int * m, const size_t j,
+                            const size_t offset, const size_t n);
+
+_gsl_matrix_int_view
+gsl_matrix_int_view_array (int * base,
+                             const size_t n1, 
+                             const size_t n2);
+
+_gsl_matrix_int_view
+gsl_matrix_int_view_array_with_tda (int * base, 
+                                      const size_t n1, 
+                                      const size_t n2,
+                                      const size_t tda);
+
+
+_gsl_matrix_int_view
+gsl_matrix_int_view_vector (gsl_vector_int * v,
+                              const size_t n1, 
+                              const size_t n2);
+
+_gsl_matrix_int_view
+gsl_matrix_int_view_vector_with_tda (gsl_vector_int * v,
+                                       const size_t n1, 
+                                       const size_t n2,
+                                       const size_t tda);
+
+
+_gsl_matrix_int_const_view 
+gsl_matrix_int_const_submatrix (const gsl_matrix_int * m, 
+                                  const size_t i, const size_t j, 
+                                  const size_t n1, const size_t n2);
+
+_gsl_vector_int_const_view 
+gsl_matrix_int_const_row (const gsl_matrix_int * m, 
+                            const size_t i);
+
+_gsl_vector_int_const_view 
+gsl_matrix_int_const_column (const gsl_matrix_int * m, 
+                               const size_t j);
+
+_gsl_vector_int_const_view
+gsl_matrix_int_const_diagonal (const gsl_matrix_int * m);
+
+_gsl_vector_int_const_view 
+gsl_matrix_int_const_subdiagonal (const gsl_matrix_int * m, 
+                                    const size_t k);
+
+_gsl_vector_int_const_view 
+gsl_matrix_int_const_superdiagonal (const gsl_matrix_int * m, 
+                                      const size_t k);
+
+_gsl_vector_int_const_view
+gsl_matrix_int_const_subrow (const gsl_matrix_int * m, const size_t i,
+                               const size_t offset, const size_t n);
+
+_gsl_vector_int_const_view
+gsl_matrix_int_const_subcolumn (const gsl_matrix_int * m, const size_t j,
+                                  const size_t offset, const size_t n);
+
+_gsl_matrix_int_const_view
+gsl_matrix_int_const_view_array (const int * base,
+                                   const size_t n1, 
+                                   const size_t n2);
+
+_gsl_matrix_int_const_view
+gsl_matrix_int_const_view_array_with_tda (const int * base, 
+                                            const size_t n1, 
+                                            const size_t n2,
+                                            const size_t tda);
+
+_gsl_matrix_int_const_view
+gsl_matrix_int_const_view_vector (const gsl_vector_int * v,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+_gsl_matrix_int_const_view
+gsl_matrix_int_const_view_vector_with_tda (const gsl_vector_int * v,
+                                             const size_t n1, 
+                                             const size_t n2,
+                                             const size_t tda);
+
+/* Operations */
+
+void gsl_matrix_int_set_zero (gsl_matrix_int * m);
+void gsl_matrix_int_set_identity (gsl_matrix_int * m);
+void gsl_matrix_int_set_all (gsl_matrix_int * m, int x);
+
+int gsl_matrix_int_fread (FILE * stream, gsl_matrix_int * m) ;
+int gsl_matrix_int_fwrite (FILE * stream, const gsl_matrix_int * m) ;
+int gsl_matrix_int_fscanf (FILE * stream, gsl_matrix_int * m);
+int gsl_matrix_int_fprintf (FILE * stream, const gsl_matrix_int * m, const char * format);
+ 
+int gsl_matrix_int_memcpy(gsl_matrix_int * dest, const gsl_matrix_int * src);
+int gsl_matrix_int_swap(gsl_matrix_int * m1, gsl_matrix_int * m2);
+
+int gsl_matrix_int_swap_rows(gsl_matrix_int * m, const size_t i, const size_t j);
+int gsl_matrix_int_swap_columns(gsl_matrix_int * m, const size_t i, const size_t j);
+int gsl_matrix_int_swap_rowcol(gsl_matrix_int * m, const size_t i, const size_t j);
+int gsl_matrix_int_transpose (gsl_matrix_int * m);
+int gsl_matrix_int_transpose_memcpy (gsl_matrix_int * dest, const gsl_matrix_int * src);
+
+int gsl_matrix_int_max (const gsl_matrix_int * m);
+int gsl_matrix_int_min (const gsl_matrix_int * m);
+void gsl_matrix_int_minmax (const gsl_matrix_int * m, int * min_out, int * max_out);
+
+void gsl_matrix_int_max_index (const gsl_matrix_int * m, size_t * imax, size_t *jmax);
+void gsl_matrix_int_min_index (const gsl_matrix_int * m, size_t * imin, size_t *jmin);
+void gsl_matrix_int_minmax_index (const gsl_matrix_int * m, size_t * imin, size_t * jmin, size_t * imax, size_t * jmax);
+
+int gsl_matrix_int_equal (const gsl_matrix_int * a, const gsl_matrix_int * b);
+
+int gsl_matrix_int_isnull (const gsl_matrix_int * m);
+int gsl_matrix_int_ispos (const gsl_matrix_int * m);
+int gsl_matrix_int_isneg (const gsl_matrix_int * m);
+int gsl_matrix_int_isnonneg (const gsl_matrix_int * m);
+
+int gsl_matrix_int_add (gsl_matrix_int * a, const gsl_matrix_int * b);
+int gsl_matrix_int_sub (gsl_matrix_int * a, const gsl_matrix_int * b);
+int gsl_matrix_int_mul_elements (gsl_matrix_int * a, const gsl_matrix_int * b);
+int gsl_matrix_int_div_elements (gsl_matrix_int * a, const gsl_matrix_int * b);
+int gsl_matrix_int_scale (gsl_matrix_int * a, const double x);
+int gsl_matrix_int_add_constant (gsl_matrix_int * a, const double x);
+int gsl_matrix_int_add_diagonal (gsl_matrix_int * a, const double x);
+
+/***********************************************************************/
+/* The functions below are obsolete                                    */
+/***********************************************************************/
+int gsl_matrix_int_get_row(gsl_vector_int * v, const gsl_matrix_int * m, const size_t i);
+int gsl_matrix_int_get_col(gsl_vector_int * v, const gsl_matrix_int * m, const size_t j);
+int gsl_matrix_int_set_row(gsl_matrix_int * m, const size_t i, const gsl_vector_int * v);
+int gsl_matrix_int_set_col(gsl_matrix_int * m, const size_t j, const gsl_vector_int * v);
+/***********************************************************************/
+
+/* inline functions if you are using GCC */
+
+INLINE_DECL int   gsl_matrix_int_get(const gsl_matrix_int * m, const size_t i, const size_t j);
+INLINE_DECL void    gsl_matrix_int_set(gsl_matrix_int * m, const size_t i, const size_t j, const int x);
+INLINE_DECL int * gsl_matrix_int_ptr(gsl_matrix_int * m, const size_t i, const size_t j);
+INLINE_DECL const int * gsl_matrix_int_const_ptr(const gsl_matrix_int * m, const size_t i, const size_t j);
+
+#ifdef HAVE_INLINE
+INLINE_FUN 
+int
+gsl_matrix_int_get(const gsl_matrix_int * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VAL("first index out of range", GSL_EINVAL, 0) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VAL("second index out of range", GSL_EINVAL, 0) ;
+        }
+    }
+#endif
+  return m->data[i * m->tda + j] ;
+} 
+
+INLINE_FUN 
+void
+gsl_matrix_int_set(gsl_matrix_int * m, const size_t i, const size_t j, const int x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VOID("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VOID("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  m->data[i * m->tda + j] = x ;
+}
+
+INLINE_FUN 
+int *
+gsl_matrix_int_ptr(gsl_matrix_int * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (int *) (m->data + (i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+const int *
+gsl_matrix_int_const_ptr(const gsl_matrix_int * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (const int *) (m->data + (i * m->tda + j)) ;
+} 
+
+#endif
+
+__END_DECLS
+
+#endif /* __GSL_MATRIX_INT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix_long.h b/util/X86LINUX64/include/gsl/gsl_matrix_long.h
new file mode 100644 (file)
index 0000000..ff85a18
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix_long.h
@@ -0,0 +1,350 @@
+/* matrix/gsl_matrix_long.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATRIX_LONG_H__
+#define __GSL_MATRIX_LONG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_long.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size1;
+  size_t size2;
+  size_t tda;
+  long * data;
+  gsl_block_long * block;
+  int owner;
+} gsl_matrix_long;
+
+typedef struct
+{
+  gsl_matrix_long matrix;
+} _gsl_matrix_long_view;
+
+typedef _gsl_matrix_long_view gsl_matrix_long_view;
+
+typedef struct
+{
+  gsl_matrix_long matrix;
+} _gsl_matrix_long_const_view;
+
+typedef const _gsl_matrix_long_const_view gsl_matrix_long_const_view;
+
+/* Allocation */
+
+gsl_matrix_long * 
+gsl_matrix_long_alloc (const size_t n1, const size_t n2);
+
+gsl_matrix_long * 
+gsl_matrix_long_calloc (const size_t n1, const size_t n2);
+
+gsl_matrix_long * 
+gsl_matrix_long_alloc_from_block (gsl_block_long * b, 
+                                   const size_t offset, 
+                                   const size_t n1, 
+                                   const size_t n2, 
+                                   const size_t d2);
+
+gsl_matrix_long * 
+gsl_matrix_long_alloc_from_matrix (gsl_matrix_long * m,
+                                    const size_t k1, 
+                                    const size_t k2,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+gsl_vector_long * 
+gsl_vector_long_alloc_row_from_matrix (gsl_matrix_long * m,
+                                        const size_t i);
+
+gsl_vector_long * 
+gsl_vector_long_alloc_col_from_matrix (gsl_matrix_long * m,
+                                        const size_t j);
+
+void gsl_matrix_long_free (gsl_matrix_long * m);
+
+/* Views */
+
+_gsl_matrix_long_view 
+gsl_matrix_long_submatrix (gsl_matrix_long * m, 
+                            const size_t i, const size_t j, 
+                            const size_t n1, const size_t n2);
+
+_gsl_vector_long_view 
+gsl_matrix_long_row (gsl_matrix_long * m, const size_t i);
+
+_gsl_vector_long_view 
+gsl_matrix_long_column (gsl_matrix_long * m, const size_t j);
+
+_gsl_vector_long_view 
+gsl_matrix_long_diagonal (gsl_matrix_long * m);
+
+_gsl_vector_long_view 
+gsl_matrix_long_subdiagonal (gsl_matrix_long * m, const size_t k);
+
+_gsl_vector_long_view 
+gsl_matrix_long_superdiagonal (gsl_matrix_long * m, const size_t k);
+
+_gsl_vector_long_view
+gsl_matrix_long_subrow (gsl_matrix_long * m, const size_t i,
+                         const size_t offset, const size_t n);
+
+_gsl_vector_long_view
+gsl_matrix_long_subcolumn (gsl_matrix_long * m, const size_t j,
+                            const size_t offset, const size_t n);
+
+_gsl_matrix_long_view
+gsl_matrix_long_view_array (long * base,
+                             const size_t n1, 
+                             const size_t n2);
+
+_gsl_matrix_long_view
+gsl_matrix_long_view_array_with_tda (long * base, 
+                                      const size_t n1, 
+                                      const size_t n2,
+                                      const size_t tda);
+
+
+_gsl_matrix_long_view
+gsl_matrix_long_view_vector (gsl_vector_long * v,
+                              const size_t n1, 
+                              const size_t n2);
+
+_gsl_matrix_long_view
+gsl_matrix_long_view_vector_with_tda (gsl_vector_long * v,
+                                       const size_t n1, 
+                                       const size_t n2,
+                                       const size_t tda);
+
+
+_gsl_matrix_long_const_view 
+gsl_matrix_long_const_submatrix (const gsl_matrix_long * m, 
+                                  const size_t i, const size_t j, 
+                                  const size_t n1, const size_t n2);
+
+_gsl_vector_long_const_view 
+gsl_matrix_long_const_row (const gsl_matrix_long * m, 
+                            const size_t i);
+
+_gsl_vector_long_const_view 
+gsl_matrix_long_const_column (const gsl_matrix_long * m, 
+                               const size_t j);
+
+_gsl_vector_long_const_view
+gsl_matrix_long_const_diagonal (const gsl_matrix_long * m);
+
+_gsl_vector_long_const_view 
+gsl_matrix_long_const_subdiagonal (const gsl_matrix_long * m, 
+                                    const size_t k);
+
+_gsl_vector_long_const_view 
+gsl_matrix_long_const_superdiagonal (const gsl_matrix_long * m, 
+                                      const size_t k);
+
+_gsl_vector_long_const_view
+gsl_matrix_long_const_subrow (const gsl_matrix_long * m, const size_t i,
+                               const size_t offset, const size_t n);
+
+_gsl_vector_long_const_view
+gsl_matrix_long_const_subcolumn (const gsl_matrix_long * m, const size_t j,
+                                  const size_t offset, const size_t n);
+
+_gsl_matrix_long_const_view
+gsl_matrix_long_const_view_array (const long * base,
+                                   const size_t n1, 
+                                   const size_t n2);
+
+_gsl_matrix_long_const_view
+gsl_matrix_long_const_view_array_with_tda (const long * base, 
+                                            const size_t n1, 
+                                            const size_t n2,
+                                            const size_t tda);
+
+_gsl_matrix_long_const_view
+gsl_matrix_long_const_view_vector (const gsl_vector_long * v,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+_gsl_matrix_long_const_view
+gsl_matrix_long_const_view_vector_with_tda (const gsl_vector_long * v,
+                                             const size_t n1, 
+                                             const size_t n2,
+                                             const size_t tda);
+
+/* Operations */
+
+void gsl_matrix_long_set_zero (gsl_matrix_long * m);
+void gsl_matrix_long_set_identity (gsl_matrix_long * m);
+void gsl_matrix_long_set_all (gsl_matrix_long * m, long x);
+
+int gsl_matrix_long_fread (FILE * stream, gsl_matrix_long * m) ;
+int gsl_matrix_long_fwrite (FILE * stream, const gsl_matrix_long * m) ;
+int gsl_matrix_long_fscanf (FILE * stream, gsl_matrix_long * m);
+int gsl_matrix_long_fprintf (FILE * stream, const gsl_matrix_long * m, const char * format);
+ 
+int gsl_matrix_long_memcpy(gsl_matrix_long * dest, const gsl_matrix_long * src);
+int gsl_matrix_long_swap(gsl_matrix_long * m1, gsl_matrix_long * m2);
+
+int gsl_matrix_long_swap_rows(gsl_matrix_long * m, const size_t i, const size_t j);
+int gsl_matrix_long_swap_columns(gsl_matrix_long * m, const size_t i, const size_t j);
+int gsl_matrix_long_swap_rowcol(gsl_matrix_long * m, const size_t i, const size_t j);
+int gsl_matrix_long_transpose (gsl_matrix_long * m);
+int gsl_matrix_long_transpose_memcpy (gsl_matrix_long * dest, const gsl_matrix_long * src);
+
+long gsl_matrix_long_max (const gsl_matrix_long * m);
+long gsl_matrix_long_min (const gsl_matrix_long * m);
+void gsl_matrix_long_minmax (const gsl_matrix_long * m, long * min_out, long * max_out);
+
+void gsl_matrix_long_max_index (const gsl_matrix_long * m, size_t * imax, size_t *jmax);
+void gsl_matrix_long_min_index (const gsl_matrix_long * m, size_t * imin, size_t *jmin);
+void gsl_matrix_long_minmax_index (const gsl_matrix_long * m, size_t * imin, size_t * jmin, size_t * imax, size_t * jmax);
+
+int gsl_matrix_long_equal (const gsl_matrix_long * a, const gsl_matrix_long * b);
+
+int gsl_matrix_long_isnull (const gsl_matrix_long * m);
+int gsl_matrix_long_ispos (const gsl_matrix_long * m);
+int gsl_matrix_long_isneg (const gsl_matrix_long * m);
+int gsl_matrix_long_isnonneg (const gsl_matrix_long * m);
+
+int gsl_matrix_long_add (gsl_matrix_long * a, const gsl_matrix_long * b);
+int gsl_matrix_long_sub (gsl_matrix_long * a, const gsl_matrix_long * b);
+int gsl_matrix_long_mul_elements (gsl_matrix_long * a, const gsl_matrix_long * b);
+int gsl_matrix_long_div_elements (gsl_matrix_long * a, const gsl_matrix_long * b);
+int gsl_matrix_long_scale (gsl_matrix_long * a, const double x);
+int gsl_matrix_long_add_constant (gsl_matrix_long * a, const double x);
+int gsl_matrix_long_add_diagonal (gsl_matrix_long * a, const double x);
+
+/***********************************************************************/
+/* The functions below are obsolete                                    */
+/***********************************************************************/
+int gsl_matrix_long_get_row(gsl_vector_long * v, const gsl_matrix_long * m, const size_t i);
+int gsl_matrix_long_get_col(gsl_vector_long * v, const gsl_matrix_long * m, const size_t j);
+int gsl_matrix_long_set_row(gsl_matrix_long * m, const size_t i, const gsl_vector_long * v);
+int gsl_matrix_long_set_col(gsl_matrix_long * m, const size_t j, const gsl_vector_long * v);
+/***********************************************************************/
+
+/* inline functions if you are using GCC */
+
+INLINE_DECL long   gsl_matrix_long_get(const gsl_matrix_long * m, const size_t i, const size_t j);
+INLINE_DECL void    gsl_matrix_long_set(gsl_matrix_long * m, const size_t i, const size_t j, const long x);
+INLINE_DECL long * gsl_matrix_long_ptr(gsl_matrix_long * m, const size_t i, const size_t j);
+INLINE_DECL const long * gsl_matrix_long_const_ptr(const gsl_matrix_long * m, const size_t i, const size_t j);
+
+#ifdef HAVE_INLINE
+INLINE_FUN 
+long
+gsl_matrix_long_get(const gsl_matrix_long * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VAL("first index out of range", GSL_EINVAL, 0) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VAL("second index out of range", GSL_EINVAL, 0) ;
+        }
+    }
+#endif
+  return m->data[i * m->tda + j] ;
+} 
+
+INLINE_FUN 
+void
+gsl_matrix_long_set(gsl_matrix_long * m, const size_t i, const size_t j, const long x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VOID("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VOID("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  m->data[i * m->tda + j] = x ;
+}
+
+INLINE_FUN 
+long *
+gsl_matrix_long_ptr(gsl_matrix_long * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (long *) (m->data + (i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+const long *
+gsl_matrix_long_const_ptr(const gsl_matrix_long * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (const long *) (m->data + (i * m->tda + j)) ;
+} 
+
+#endif
+
+__END_DECLS
+
+#endif /* __GSL_MATRIX_LONG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix_long_double.h b/util/X86LINUX64/include/gsl/gsl_matrix_long_double.h
new file mode 100644 (file)
index 0000000..910091f
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix_long_double.h
@@ -0,0 +1,350 @@
+/* matrix/gsl_matrix_long_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATRIX_LONG_DOUBLE_H__
+#define __GSL_MATRIX_LONG_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_long_double.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size1;
+  size_t size2;
+  size_t tda;
+  long double * data;
+  gsl_block_long_double * block;
+  int owner;
+} gsl_matrix_long_double;
+
+typedef struct
+{
+  gsl_matrix_long_double matrix;
+} _gsl_matrix_long_double_view;
+
+typedef _gsl_matrix_long_double_view gsl_matrix_long_double_view;
+
+typedef struct
+{
+  gsl_matrix_long_double matrix;
+} _gsl_matrix_long_double_const_view;
+
+typedef const _gsl_matrix_long_double_const_view gsl_matrix_long_double_const_view;
+
+/* Allocation */
+
+gsl_matrix_long_double * 
+gsl_matrix_long_double_alloc (const size_t n1, const size_t n2);
+
+gsl_matrix_long_double * 
+gsl_matrix_long_double_calloc (const size_t n1, const size_t n2);
+
+gsl_matrix_long_double * 
+gsl_matrix_long_double_alloc_from_block (gsl_block_long_double * b, 
+                                   const size_t offset, 
+                                   const size_t n1, 
+                                   const size_t n2, 
+                                   const size_t d2);
+
+gsl_matrix_long_double * 
+gsl_matrix_long_double_alloc_from_matrix (gsl_matrix_long_double * m,
+                                    const size_t k1, 
+                                    const size_t k2,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+gsl_vector_long_double * 
+gsl_vector_long_double_alloc_row_from_matrix (gsl_matrix_long_double * m,
+                                        const size_t i);
+
+gsl_vector_long_double * 
+gsl_vector_long_double_alloc_col_from_matrix (gsl_matrix_long_double * m,
+                                        const size_t j);
+
+void gsl_matrix_long_double_free (gsl_matrix_long_double * m);
+
+/* Views */
+
+_gsl_matrix_long_double_view 
+gsl_matrix_long_double_submatrix (gsl_matrix_long_double * m, 
+                            const size_t i, const size_t j, 
+                            const size_t n1, const size_t n2);
+
+_gsl_vector_long_double_view 
+gsl_matrix_long_double_row (gsl_matrix_long_double * m, const size_t i);
+
+_gsl_vector_long_double_view 
+gsl_matrix_long_double_column (gsl_matrix_long_double * m, const size_t j);
+
+_gsl_vector_long_double_view 
+gsl_matrix_long_double_diagonal (gsl_matrix_long_double * m);
+
+_gsl_vector_long_double_view 
+gsl_matrix_long_double_subdiagonal (gsl_matrix_long_double * m, const size_t k);
+
+_gsl_vector_long_double_view 
+gsl_matrix_long_double_superdiagonal (gsl_matrix_long_double * m, const size_t k);
+
+_gsl_vector_long_double_view
+gsl_matrix_long_double_subrow (gsl_matrix_long_double * m, const size_t i,
+                         const size_t offset, const size_t n);
+
+_gsl_vector_long_double_view
+gsl_matrix_long_double_subcolumn (gsl_matrix_long_double * m, const size_t j,
+                            const size_t offset, const size_t n);
+
+_gsl_matrix_long_double_view
+gsl_matrix_long_double_view_array (long double * base,
+                             const size_t n1, 
+                             const size_t n2);
+
+_gsl_matrix_long_double_view
+gsl_matrix_long_double_view_array_with_tda (long double * base, 
+                                      const size_t n1, 
+                                      const size_t n2,
+                                      const size_t tda);
+
+
+_gsl_matrix_long_double_view
+gsl_matrix_long_double_view_vector (gsl_vector_long_double * v,
+                              const size_t n1, 
+                              const size_t n2);
+
+_gsl_matrix_long_double_view
+gsl_matrix_long_double_view_vector_with_tda (gsl_vector_long_double * v,
+                                       const size_t n1, 
+                                       const size_t n2,
+                                       const size_t tda);
+
+
+_gsl_matrix_long_double_const_view 
+gsl_matrix_long_double_const_submatrix (const gsl_matrix_long_double * m, 
+                                  const size_t i, const size_t j, 
+                                  const size_t n1, const size_t n2);
+
+_gsl_vector_long_double_const_view 
+gsl_matrix_long_double_const_row (const gsl_matrix_long_double * m, 
+                            const size_t i);
+
+_gsl_vector_long_double_const_view 
+gsl_matrix_long_double_const_column (const gsl_matrix_long_double * m, 
+                               const size_t j);
+
+_gsl_vector_long_double_const_view
+gsl_matrix_long_double_const_diagonal (const gsl_matrix_long_double * m);
+
+_gsl_vector_long_double_const_view 
+gsl_matrix_long_double_const_subdiagonal (const gsl_matrix_long_double * m, 
+                                    const size_t k);
+
+_gsl_vector_long_double_const_view 
+gsl_matrix_long_double_const_superdiagonal (const gsl_matrix_long_double * m, 
+                                      const size_t k);
+
+_gsl_vector_long_double_const_view
+gsl_matrix_long_double_const_subrow (const gsl_matrix_long_double * m, const size_t i,
+                               const size_t offset, const size_t n);
+
+_gsl_vector_long_double_const_view
+gsl_matrix_long_double_const_subcolumn (const gsl_matrix_long_double * m, const size_t j,
+                                  const size_t offset, const size_t n);
+
+_gsl_matrix_long_double_const_view
+gsl_matrix_long_double_const_view_array (const long double * base,
+                                   const size_t n1, 
+                                   const size_t n2);
+
+_gsl_matrix_long_double_const_view
+gsl_matrix_long_double_const_view_array_with_tda (const long double * base, 
+                                            const size_t n1, 
+                                            const size_t n2,
+                                            const size_t tda);
+
+_gsl_matrix_long_double_const_view
+gsl_matrix_long_double_const_view_vector (const gsl_vector_long_double * v,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+_gsl_matrix_long_double_const_view
+gsl_matrix_long_double_const_view_vector_with_tda (const gsl_vector_long_double * v,
+                                             const size_t n1, 
+                                             const size_t n2,
+                                             const size_t tda);
+
+/* Operations */
+
+void gsl_matrix_long_double_set_zero (gsl_matrix_long_double * m);
+void gsl_matrix_long_double_set_identity (gsl_matrix_long_double * m);
+void gsl_matrix_long_double_set_all (gsl_matrix_long_double * m, long double x);
+
+int gsl_matrix_long_double_fread (FILE * stream, gsl_matrix_long_double * m) ;
+int gsl_matrix_long_double_fwrite (FILE * stream, const gsl_matrix_long_double * m) ;
+int gsl_matrix_long_double_fscanf (FILE * stream, gsl_matrix_long_double * m);
+int gsl_matrix_long_double_fprintf (FILE * stream, const gsl_matrix_long_double * m, const char * format);
+ 
+int gsl_matrix_long_double_memcpy(gsl_matrix_long_double * dest, const gsl_matrix_long_double * src);
+int gsl_matrix_long_double_swap(gsl_matrix_long_double * m1, gsl_matrix_long_double * m2);
+
+int gsl_matrix_long_double_swap_rows(gsl_matrix_long_double * m, const size_t i, const size_t j);
+int gsl_matrix_long_double_swap_columns(gsl_matrix_long_double * m, const size_t i, const size_t j);
+int gsl_matrix_long_double_swap_rowcol(gsl_matrix_long_double * m, const size_t i, const size_t j);
+int gsl_matrix_long_double_transpose (gsl_matrix_long_double * m);
+int gsl_matrix_long_double_transpose_memcpy (gsl_matrix_long_double * dest, const gsl_matrix_long_double * src);
+
+long double gsl_matrix_long_double_max (const gsl_matrix_long_double * m);
+long double gsl_matrix_long_double_min (const gsl_matrix_long_double * m);
+void gsl_matrix_long_double_minmax (const gsl_matrix_long_double * m, long double * min_out, long double * max_out);
+
+void gsl_matrix_long_double_max_index (const gsl_matrix_long_double * m, size_t * imax, size_t *jmax);
+void gsl_matrix_long_double_min_index (const gsl_matrix_long_double * m, size_t * imin, size_t *jmin);
+void gsl_matrix_long_double_minmax_index (const gsl_matrix_long_double * m, size_t * imin, size_t * jmin, size_t * imax, size_t * jmax);
+
+int gsl_matrix_long_double_equal (const gsl_matrix_long_double * a, const gsl_matrix_long_double * b);
+
+int gsl_matrix_long_double_isnull (const gsl_matrix_long_double * m);
+int gsl_matrix_long_double_ispos (const gsl_matrix_long_double * m);
+int gsl_matrix_long_double_isneg (const gsl_matrix_long_double * m);
+int gsl_matrix_long_double_isnonneg (const gsl_matrix_long_double * m);
+
+int gsl_matrix_long_double_add (gsl_matrix_long_double * a, const gsl_matrix_long_double * b);
+int gsl_matrix_long_double_sub (gsl_matrix_long_double * a, const gsl_matrix_long_double * b);
+int gsl_matrix_long_double_mul_elements (gsl_matrix_long_double * a, const gsl_matrix_long_double * b);
+int gsl_matrix_long_double_div_elements (gsl_matrix_long_double * a, const gsl_matrix_long_double * b);
+int gsl_matrix_long_double_scale (gsl_matrix_long_double * a, const double x);
+int gsl_matrix_long_double_add_constant (gsl_matrix_long_double * a, const double x);
+int gsl_matrix_long_double_add_diagonal (gsl_matrix_long_double * a, const double x);
+
+/***********************************************************************/
+/* The functions below are obsolete                                    */
+/***********************************************************************/
+int gsl_matrix_long_double_get_row(gsl_vector_long_double * v, const gsl_matrix_long_double * m, const size_t i);
+int gsl_matrix_long_double_get_col(gsl_vector_long_double * v, const gsl_matrix_long_double * m, const size_t j);
+int gsl_matrix_long_double_set_row(gsl_matrix_long_double * m, const size_t i, const gsl_vector_long_double * v);
+int gsl_matrix_long_double_set_col(gsl_matrix_long_double * m, const size_t j, const gsl_vector_long_double * v);
+/***********************************************************************/
+
+/* inline functions if you are using GCC */
+
+INLINE_DECL long double   gsl_matrix_long_double_get(const gsl_matrix_long_double * m, const size_t i, const size_t j);
+INLINE_DECL void    gsl_matrix_long_double_set(gsl_matrix_long_double * m, const size_t i, const size_t j, const long double x);
+INLINE_DECL long double * gsl_matrix_long_double_ptr(gsl_matrix_long_double * m, const size_t i, const size_t j);
+INLINE_DECL const long double * gsl_matrix_long_double_const_ptr(const gsl_matrix_long_double * m, const size_t i, const size_t j);
+
+#ifdef HAVE_INLINE
+INLINE_FUN 
+long double
+gsl_matrix_long_double_get(const gsl_matrix_long_double * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VAL("first index out of range", GSL_EINVAL, 0) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VAL("second index out of range", GSL_EINVAL, 0) ;
+        }
+    }
+#endif
+  return m->data[i * m->tda + j] ;
+} 
+
+INLINE_FUN 
+void
+gsl_matrix_long_double_set(gsl_matrix_long_double * m, const size_t i, const size_t j, const long double x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VOID("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VOID("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  m->data[i * m->tda + j] = x ;
+}
+
+INLINE_FUN 
+long double *
+gsl_matrix_long_double_ptr(gsl_matrix_long_double * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (long double *) (m->data + (i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+const long double *
+gsl_matrix_long_double_const_ptr(const gsl_matrix_long_double * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (const long double *) (m->data + (i * m->tda + j)) ;
+} 
+
+#endif
+
+__END_DECLS
+
+#endif /* __GSL_MATRIX_LONG_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix_short.h b/util/X86LINUX64/include/gsl/gsl_matrix_short.h
new file mode 100644 (file)
index 0000000..53e89e6
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix_short.h
@@ -0,0 +1,350 @@
+/* matrix/gsl_matrix_short.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATRIX_SHORT_H__
+#define __GSL_MATRIX_SHORT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_short.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size1;
+  size_t size2;
+  size_t tda;
+  short * data;
+  gsl_block_short * block;
+  int owner;
+} gsl_matrix_short;
+
+typedef struct
+{
+  gsl_matrix_short matrix;
+} _gsl_matrix_short_view;
+
+typedef _gsl_matrix_short_view gsl_matrix_short_view;
+
+typedef struct
+{
+  gsl_matrix_short matrix;
+} _gsl_matrix_short_const_view;
+
+typedef const _gsl_matrix_short_const_view gsl_matrix_short_const_view;
+
+/* Allocation */
+
+gsl_matrix_short * 
+gsl_matrix_short_alloc (const size_t n1, const size_t n2);
+
+gsl_matrix_short * 
+gsl_matrix_short_calloc (const size_t n1, const size_t n2);
+
+gsl_matrix_short * 
+gsl_matrix_short_alloc_from_block (gsl_block_short * b, 
+                                   const size_t offset, 
+                                   const size_t n1, 
+                                   const size_t n2, 
+                                   const size_t d2);
+
+gsl_matrix_short * 
+gsl_matrix_short_alloc_from_matrix (gsl_matrix_short * m,
+                                    const size_t k1, 
+                                    const size_t k2,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+gsl_vector_short * 
+gsl_vector_short_alloc_row_from_matrix (gsl_matrix_short * m,
+                                        const size_t i);
+
+gsl_vector_short * 
+gsl_vector_short_alloc_col_from_matrix (gsl_matrix_short * m,
+                                        const size_t j);
+
+void gsl_matrix_short_free (gsl_matrix_short * m);
+
+/* Views */
+
+_gsl_matrix_short_view 
+gsl_matrix_short_submatrix (gsl_matrix_short * m, 
+                            const size_t i, const size_t j, 
+                            const size_t n1, const size_t n2);
+
+_gsl_vector_short_view 
+gsl_matrix_short_row (gsl_matrix_short * m, const size_t i);
+
+_gsl_vector_short_view 
+gsl_matrix_short_column (gsl_matrix_short * m, const size_t j);
+
+_gsl_vector_short_view 
+gsl_matrix_short_diagonal (gsl_matrix_short * m);
+
+_gsl_vector_short_view 
+gsl_matrix_short_subdiagonal (gsl_matrix_short * m, const size_t k);
+
+_gsl_vector_short_view 
+gsl_matrix_short_superdiagonal (gsl_matrix_short * m, const size_t k);
+
+_gsl_vector_short_view
+gsl_matrix_short_subrow (gsl_matrix_short * m, const size_t i,
+                         const size_t offset, const size_t n);
+
+_gsl_vector_short_view
+gsl_matrix_short_subcolumn (gsl_matrix_short * m, const size_t j,
+                            const size_t offset, const size_t n);
+
+_gsl_matrix_short_view
+gsl_matrix_short_view_array (short * base,
+                             const size_t n1, 
+                             const size_t n2);
+
+_gsl_matrix_short_view
+gsl_matrix_short_view_array_with_tda (short * base, 
+                                      const size_t n1, 
+                                      const size_t n2,
+                                      const size_t tda);
+
+
+_gsl_matrix_short_view
+gsl_matrix_short_view_vector (gsl_vector_short * v,
+                              const size_t n1, 
+                              const size_t n2);
+
+_gsl_matrix_short_view
+gsl_matrix_short_view_vector_with_tda (gsl_vector_short * v,
+                                       const size_t n1, 
+                                       const size_t n2,
+                                       const size_t tda);
+
+
+_gsl_matrix_short_const_view 
+gsl_matrix_short_const_submatrix (const gsl_matrix_short * m, 
+                                  const size_t i, const size_t j, 
+                                  const size_t n1, const size_t n2);
+
+_gsl_vector_short_const_view 
+gsl_matrix_short_const_row (const gsl_matrix_short * m, 
+                            const size_t i);
+
+_gsl_vector_short_const_view 
+gsl_matrix_short_const_column (const gsl_matrix_short * m, 
+                               const size_t j);
+
+_gsl_vector_short_const_view
+gsl_matrix_short_const_diagonal (const gsl_matrix_short * m);
+
+_gsl_vector_short_const_view 
+gsl_matrix_short_const_subdiagonal (const gsl_matrix_short * m, 
+                                    const size_t k);
+
+_gsl_vector_short_const_view 
+gsl_matrix_short_const_superdiagonal (const gsl_matrix_short * m, 
+                                      const size_t k);
+
+_gsl_vector_short_const_view
+gsl_matrix_short_const_subrow (const gsl_matrix_short * m, const size_t i,
+                               const size_t offset, const size_t n);
+
+_gsl_vector_short_const_view
+gsl_matrix_short_const_subcolumn (const gsl_matrix_short * m, const size_t j,
+                                  const size_t offset, const size_t n);
+
+_gsl_matrix_short_const_view
+gsl_matrix_short_const_view_array (const short * base,
+                                   const size_t n1, 
+                                   const size_t n2);
+
+_gsl_matrix_short_const_view
+gsl_matrix_short_const_view_array_with_tda (const short * base, 
+                                            const size_t n1, 
+                                            const size_t n2,
+                                            const size_t tda);
+
+_gsl_matrix_short_const_view
+gsl_matrix_short_const_view_vector (const gsl_vector_short * v,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+_gsl_matrix_short_const_view
+gsl_matrix_short_const_view_vector_with_tda (const gsl_vector_short * v,
+                                             const size_t n1, 
+                                             const size_t n2,
+                                             const size_t tda);
+
+/* Operations */
+
+void gsl_matrix_short_set_zero (gsl_matrix_short * m);
+void gsl_matrix_short_set_identity (gsl_matrix_short * m);
+void gsl_matrix_short_set_all (gsl_matrix_short * m, short x);
+
+int gsl_matrix_short_fread (FILE * stream, gsl_matrix_short * m) ;
+int gsl_matrix_short_fwrite (FILE * stream, const gsl_matrix_short * m) ;
+int gsl_matrix_short_fscanf (FILE * stream, gsl_matrix_short * m);
+int gsl_matrix_short_fprintf (FILE * stream, const gsl_matrix_short * m, const char * format);
+ 
+int gsl_matrix_short_memcpy(gsl_matrix_short * dest, const gsl_matrix_short * src);
+int gsl_matrix_short_swap(gsl_matrix_short * m1, gsl_matrix_short * m2);
+
+int gsl_matrix_short_swap_rows(gsl_matrix_short * m, const size_t i, const size_t j);
+int gsl_matrix_short_swap_columns(gsl_matrix_short * m, const size_t i, const size_t j);
+int gsl_matrix_short_swap_rowcol(gsl_matrix_short * m, const size_t i, const size_t j);
+int gsl_matrix_short_transpose (gsl_matrix_short * m);
+int gsl_matrix_short_transpose_memcpy (gsl_matrix_short * dest, const gsl_matrix_short * src);
+
+short gsl_matrix_short_max (const gsl_matrix_short * m);
+short gsl_matrix_short_min (const gsl_matrix_short * m);
+void gsl_matrix_short_minmax (const gsl_matrix_short * m, short * min_out, short * max_out);
+
+void gsl_matrix_short_max_index (const gsl_matrix_short * m, size_t * imax, size_t *jmax);
+void gsl_matrix_short_min_index (const gsl_matrix_short * m, size_t * imin, size_t *jmin);
+void gsl_matrix_short_minmax_index (const gsl_matrix_short * m, size_t * imin, size_t * jmin, size_t * imax, size_t * jmax);
+
+int gsl_matrix_short_equal (const gsl_matrix_short * a, const gsl_matrix_short * b);
+
+int gsl_matrix_short_isnull (const gsl_matrix_short * m);
+int gsl_matrix_short_ispos (const gsl_matrix_short * m);
+int gsl_matrix_short_isneg (const gsl_matrix_short * m);
+int gsl_matrix_short_isnonneg (const gsl_matrix_short * m);
+
+int gsl_matrix_short_add (gsl_matrix_short * a, const gsl_matrix_short * b);
+int gsl_matrix_short_sub (gsl_matrix_short * a, const gsl_matrix_short * b);
+int gsl_matrix_short_mul_elements (gsl_matrix_short * a, const gsl_matrix_short * b);
+int gsl_matrix_short_div_elements (gsl_matrix_short * a, const gsl_matrix_short * b);
+int gsl_matrix_short_scale (gsl_matrix_short * a, const double x);
+int gsl_matrix_short_add_constant (gsl_matrix_short * a, const double x);
+int gsl_matrix_short_add_diagonal (gsl_matrix_short * a, const double x);
+
+/***********************************************************************/
+/* The functions below are obsolete                                    */
+/***********************************************************************/
+int gsl_matrix_short_get_row(gsl_vector_short * v, const gsl_matrix_short * m, const size_t i);
+int gsl_matrix_short_get_col(gsl_vector_short * v, const gsl_matrix_short * m, const size_t j);
+int gsl_matrix_short_set_row(gsl_matrix_short * m, const size_t i, const gsl_vector_short * v);
+int gsl_matrix_short_set_col(gsl_matrix_short * m, const size_t j, const gsl_vector_short * v);
+/***********************************************************************/
+
+/* inline functions if you are using GCC */
+
+INLINE_DECL short   gsl_matrix_short_get(const gsl_matrix_short * m, const size_t i, const size_t j);
+INLINE_DECL void    gsl_matrix_short_set(gsl_matrix_short * m, const size_t i, const size_t j, const short x);
+INLINE_DECL short * gsl_matrix_short_ptr(gsl_matrix_short * m, const size_t i, const size_t j);
+INLINE_DECL const short * gsl_matrix_short_const_ptr(const gsl_matrix_short * m, const size_t i, const size_t j);
+
+#ifdef HAVE_INLINE
+INLINE_FUN 
+short
+gsl_matrix_short_get(const gsl_matrix_short * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VAL("first index out of range", GSL_EINVAL, 0) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VAL("second index out of range", GSL_EINVAL, 0) ;
+        }
+    }
+#endif
+  return m->data[i * m->tda + j] ;
+} 
+
+INLINE_FUN 
+void
+gsl_matrix_short_set(gsl_matrix_short * m, const size_t i, const size_t j, const short x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VOID("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VOID("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  m->data[i * m->tda + j] = x ;
+}
+
+INLINE_FUN 
+short *
+gsl_matrix_short_ptr(gsl_matrix_short * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (short *) (m->data + (i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+const short *
+gsl_matrix_short_const_ptr(const gsl_matrix_short * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (const short *) (m->data + (i * m->tda + j)) ;
+} 
+
+#endif
+
+__END_DECLS
+
+#endif /* __GSL_MATRIX_SHORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix_uchar.h b/util/X86LINUX64/include/gsl/gsl_matrix_uchar.h
new file mode 100644 (file)
index 0000000..0ab540f
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix_uchar.h
@@ -0,0 +1,350 @@
+/* matrix/gsl_matrix_uchar.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATRIX_UCHAR_H__
+#define __GSL_MATRIX_UCHAR_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_uchar.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size1;
+  size_t size2;
+  size_t tda;
+  unsigned char * data;
+  gsl_block_uchar * block;
+  int owner;
+} gsl_matrix_uchar;
+
+typedef struct
+{
+  gsl_matrix_uchar matrix;
+} _gsl_matrix_uchar_view;
+
+typedef _gsl_matrix_uchar_view gsl_matrix_uchar_view;
+
+typedef struct
+{
+  gsl_matrix_uchar matrix;
+} _gsl_matrix_uchar_const_view;
+
+typedef const _gsl_matrix_uchar_const_view gsl_matrix_uchar_const_view;
+
+/* Allocation */
+
+gsl_matrix_uchar * 
+gsl_matrix_uchar_alloc (const size_t n1, const size_t n2);
+
+gsl_matrix_uchar * 
+gsl_matrix_uchar_calloc (const size_t n1, const size_t n2);
+
+gsl_matrix_uchar * 
+gsl_matrix_uchar_alloc_from_block (gsl_block_uchar * b, 
+                                   const size_t offset, 
+                                   const size_t n1, 
+                                   const size_t n2, 
+                                   const size_t d2);
+
+gsl_matrix_uchar * 
+gsl_matrix_uchar_alloc_from_matrix (gsl_matrix_uchar * m,
+                                    const size_t k1, 
+                                    const size_t k2,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+gsl_vector_uchar * 
+gsl_vector_uchar_alloc_row_from_matrix (gsl_matrix_uchar * m,
+                                        const size_t i);
+
+gsl_vector_uchar * 
+gsl_vector_uchar_alloc_col_from_matrix (gsl_matrix_uchar * m,
+                                        const size_t j);
+
+void gsl_matrix_uchar_free (gsl_matrix_uchar * m);
+
+/* Views */
+
+_gsl_matrix_uchar_view 
+gsl_matrix_uchar_submatrix (gsl_matrix_uchar * m, 
+                            const size_t i, const size_t j, 
+                            const size_t n1, const size_t n2);
+
+_gsl_vector_uchar_view 
+gsl_matrix_uchar_row (gsl_matrix_uchar * m, const size_t i);
+
+_gsl_vector_uchar_view 
+gsl_matrix_uchar_column (gsl_matrix_uchar * m, const size_t j);
+
+_gsl_vector_uchar_view 
+gsl_matrix_uchar_diagonal (gsl_matrix_uchar * m);
+
+_gsl_vector_uchar_view 
+gsl_matrix_uchar_subdiagonal (gsl_matrix_uchar * m, const size_t k);
+
+_gsl_vector_uchar_view 
+gsl_matrix_uchar_superdiagonal (gsl_matrix_uchar * m, const size_t k);
+
+_gsl_vector_uchar_view
+gsl_matrix_uchar_subrow (gsl_matrix_uchar * m, const size_t i,
+                         const size_t offset, const size_t n);
+
+_gsl_vector_uchar_view
+gsl_matrix_uchar_subcolumn (gsl_matrix_uchar * m, const size_t j,
+                            const size_t offset, const size_t n);
+
+_gsl_matrix_uchar_view
+gsl_matrix_uchar_view_array (unsigned char * base,
+                             const size_t n1, 
+                             const size_t n2);
+
+_gsl_matrix_uchar_view
+gsl_matrix_uchar_view_array_with_tda (unsigned char * base, 
+                                      const size_t n1, 
+                                      const size_t n2,
+                                      const size_t tda);
+
+
+_gsl_matrix_uchar_view
+gsl_matrix_uchar_view_vector (gsl_vector_uchar * v,
+                              const size_t n1, 
+                              const size_t n2);
+
+_gsl_matrix_uchar_view
+gsl_matrix_uchar_view_vector_with_tda (gsl_vector_uchar * v,
+                                       const size_t n1, 
+                                       const size_t n2,
+                                       const size_t tda);
+
+
+_gsl_matrix_uchar_const_view 
+gsl_matrix_uchar_const_submatrix (const gsl_matrix_uchar * m, 
+                                  const size_t i, const size_t j, 
+                                  const size_t n1, const size_t n2);
+
+_gsl_vector_uchar_const_view 
+gsl_matrix_uchar_const_row (const gsl_matrix_uchar * m, 
+                            const size_t i);
+
+_gsl_vector_uchar_const_view 
+gsl_matrix_uchar_const_column (const gsl_matrix_uchar * m, 
+                               const size_t j);
+
+_gsl_vector_uchar_const_view
+gsl_matrix_uchar_const_diagonal (const gsl_matrix_uchar * m);
+
+_gsl_vector_uchar_const_view 
+gsl_matrix_uchar_const_subdiagonal (const gsl_matrix_uchar * m, 
+                                    const size_t k);
+
+_gsl_vector_uchar_const_view 
+gsl_matrix_uchar_const_superdiagonal (const gsl_matrix_uchar * m, 
+                                      const size_t k);
+
+_gsl_vector_uchar_const_view
+gsl_matrix_uchar_const_subrow (const gsl_matrix_uchar * m, const size_t i,
+                               const size_t offset, const size_t n);
+
+_gsl_vector_uchar_const_view
+gsl_matrix_uchar_const_subcolumn (const gsl_matrix_uchar * m, const size_t j,
+                                  const size_t offset, const size_t n);
+
+_gsl_matrix_uchar_const_view
+gsl_matrix_uchar_const_view_array (const unsigned char * base,
+                                   const size_t n1, 
+                                   const size_t n2);
+
+_gsl_matrix_uchar_const_view
+gsl_matrix_uchar_const_view_array_with_tda (const unsigned char * base, 
+                                            const size_t n1, 
+                                            const size_t n2,
+                                            const size_t tda);
+
+_gsl_matrix_uchar_const_view
+gsl_matrix_uchar_const_view_vector (const gsl_vector_uchar * v,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+_gsl_matrix_uchar_const_view
+gsl_matrix_uchar_const_view_vector_with_tda (const gsl_vector_uchar * v,
+                                             const size_t n1, 
+                                             const size_t n2,
+                                             const size_t tda);
+
+/* Operations */
+
+void gsl_matrix_uchar_set_zero (gsl_matrix_uchar * m);
+void gsl_matrix_uchar_set_identity (gsl_matrix_uchar * m);
+void gsl_matrix_uchar_set_all (gsl_matrix_uchar * m, unsigned char x);
+
+int gsl_matrix_uchar_fread (FILE * stream, gsl_matrix_uchar * m) ;
+int gsl_matrix_uchar_fwrite (FILE * stream, const gsl_matrix_uchar * m) ;
+int gsl_matrix_uchar_fscanf (FILE * stream, gsl_matrix_uchar * m);
+int gsl_matrix_uchar_fprintf (FILE * stream, const gsl_matrix_uchar * m, const char * format);
+ 
+int gsl_matrix_uchar_memcpy(gsl_matrix_uchar * dest, const gsl_matrix_uchar * src);
+int gsl_matrix_uchar_swap(gsl_matrix_uchar * m1, gsl_matrix_uchar * m2);
+
+int gsl_matrix_uchar_swap_rows(gsl_matrix_uchar * m, const size_t i, const size_t j);
+int gsl_matrix_uchar_swap_columns(gsl_matrix_uchar * m, const size_t i, const size_t j);
+int gsl_matrix_uchar_swap_rowcol(gsl_matrix_uchar * m, const size_t i, const size_t j);
+int gsl_matrix_uchar_transpose (gsl_matrix_uchar * m);
+int gsl_matrix_uchar_transpose_memcpy (gsl_matrix_uchar * dest, const gsl_matrix_uchar * src);
+
+unsigned char gsl_matrix_uchar_max (const gsl_matrix_uchar * m);
+unsigned char gsl_matrix_uchar_min (const gsl_matrix_uchar * m);
+void gsl_matrix_uchar_minmax (const gsl_matrix_uchar * m, unsigned char * min_out, unsigned char * max_out);
+
+void gsl_matrix_uchar_max_index (const gsl_matrix_uchar * m, size_t * imax, size_t *jmax);
+void gsl_matrix_uchar_min_index (const gsl_matrix_uchar * m, size_t * imin, size_t *jmin);
+void gsl_matrix_uchar_minmax_index (const gsl_matrix_uchar * m, size_t * imin, size_t * jmin, size_t * imax, size_t * jmax);
+
+int gsl_matrix_uchar_equal (const gsl_matrix_uchar * a, const gsl_matrix_uchar * b);
+
+int gsl_matrix_uchar_isnull (const gsl_matrix_uchar * m);
+int gsl_matrix_uchar_ispos (const gsl_matrix_uchar * m);
+int gsl_matrix_uchar_isneg (const gsl_matrix_uchar * m);
+int gsl_matrix_uchar_isnonneg (const gsl_matrix_uchar * m);
+
+int gsl_matrix_uchar_add (gsl_matrix_uchar * a, const gsl_matrix_uchar * b);
+int gsl_matrix_uchar_sub (gsl_matrix_uchar * a, const gsl_matrix_uchar * b);
+int gsl_matrix_uchar_mul_elements (gsl_matrix_uchar * a, const gsl_matrix_uchar * b);
+int gsl_matrix_uchar_div_elements (gsl_matrix_uchar * a, const gsl_matrix_uchar * b);
+int gsl_matrix_uchar_scale (gsl_matrix_uchar * a, const double x);
+int gsl_matrix_uchar_add_constant (gsl_matrix_uchar * a, const double x);
+int gsl_matrix_uchar_add_diagonal (gsl_matrix_uchar * a, const double x);
+
+/***********************************************************************/
+/* The functions below are obsolete                                    */
+/***********************************************************************/
+int gsl_matrix_uchar_get_row(gsl_vector_uchar * v, const gsl_matrix_uchar * m, const size_t i);
+int gsl_matrix_uchar_get_col(gsl_vector_uchar * v, const gsl_matrix_uchar * m, const size_t j);
+int gsl_matrix_uchar_set_row(gsl_matrix_uchar * m, const size_t i, const gsl_vector_uchar * v);
+int gsl_matrix_uchar_set_col(gsl_matrix_uchar * m, const size_t j, const gsl_vector_uchar * v);
+/***********************************************************************/
+
+/* inline functions if you are using GCC */
+
+INLINE_DECL unsigned char   gsl_matrix_uchar_get(const gsl_matrix_uchar * m, const size_t i, const size_t j);
+INLINE_DECL void    gsl_matrix_uchar_set(gsl_matrix_uchar * m, const size_t i, const size_t j, const unsigned char x);
+INLINE_DECL unsigned char * gsl_matrix_uchar_ptr(gsl_matrix_uchar * m, const size_t i, const size_t j);
+INLINE_DECL const unsigned char * gsl_matrix_uchar_const_ptr(const gsl_matrix_uchar * m, const size_t i, const size_t j);
+
+#ifdef HAVE_INLINE
+INLINE_FUN 
+unsigned char
+gsl_matrix_uchar_get(const gsl_matrix_uchar * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VAL("first index out of range", GSL_EINVAL, 0) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VAL("second index out of range", GSL_EINVAL, 0) ;
+        }
+    }
+#endif
+  return m->data[i * m->tda + j] ;
+} 
+
+INLINE_FUN 
+void
+gsl_matrix_uchar_set(gsl_matrix_uchar * m, const size_t i, const size_t j, const unsigned char x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VOID("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VOID("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  m->data[i * m->tda + j] = x ;
+}
+
+INLINE_FUN 
+unsigned char *
+gsl_matrix_uchar_ptr(gsl_matrix_uchar * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (unsigned char *) (m->data + (i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+const unsigned char *
+gsl_matrix_uchar_const_ptr(const gsl_matrix_uchar * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (const unsigned char *) (m->data + (i * m->tda + j)) ;
+} 
+
+#endif
+
+__END_DECLS
+
+#endif /* __GSL_MATRIX_UCHAR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix_uint.h b/util/X86LINUX64/include/gsl/gsl_matrix_uint.h
new file mode 100644 (file)
index 0000000..abb2670
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix_uint.h
@@ -0,0 +1,350 @@
+/* matrix/gsl_matrix_uint.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATRIX_UINT_H__
+#define __GSL_MATRIX_UINT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_uint.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size1;
+  size_t size2;
+  size_t tda;
+  unsigned int * data;
+  gsl_block_uint * block;
+  int owner;
+} gsl_matrix_uint;
+
+typedef struct
+{
+  gsl_matrix_uint matrix;
+} _gsl_matrix_uint_view;
+
+typedef _gsl_matrix_uint_view gsl_matrix_uint_view;
+
+typedef struct
+{
+  gsl_matrix_uint matrix;
+} _gsl_matrix_uint_const_view;
+
+typedef const _gsl_matrix_uint_const_view gsl_matrix_uint_const_view;
+
+/* Allocation */
+
+gsl_matrix_uint * 
+gsl_matrix_uint_alloc (const size_t n1, const size_t n2);
+
+gsl_matrix_uint * 
+gsl_matrix_uint_calloc (const size_t n1, const size_t n2);
+
+gsl_matrix_uint * 
+gsl_matrix_uint_alloc_from_block (gsl_block_uint * b, 
+                                   const size_t offset, 
+                                   const size_t n1, 
+                                   const size_t n2, 
+                                   const size_t d2);
+
+gsl_matrix_uint * 
+gsl_matrix_uint_alloc_from_matrix (gsl_matrix_uint * m,
+                                    const size_t k1, 
+                                    const size_t k2,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+gsl_vector_uint * 
+gsl_vector_uint_alloc_row_from_matrix (gsl_matrix_uint * m,
+                                        const size_t i);
+
+gsl_vector_uint * 
+gsl_vector_uint_alloc_col_from_matrix (gsl_matrix_uint * m,
+                                        const size_t j);
+
+void gsl_matrix_uint_free (gsl_matrix_uint * m);
+
+/* Views */
+
+_gsl_matrix_uint_view 
+gsl_matrix_uint_submatrix (gsl_matrix_uint * m, 
+                            const size_t i, const size_t j, 
+                            const size_t n1, const size_t n2);
+
+_gsl_vector_uint_view 
+gsl_matrix_uint_row (gsl_matrix_uint * m, const size_t i);
+
+_gsl_vector_uint_view 
+gsl_matrix_uint_column (gsl_matrix_uint * m, const size_t j);
+
+_gsl_vector_uint_view 
+gsl_matrix_uint_diagonal (gsl_matrix_uint * m);
+
+_gsl_vector_uint_view 
+gsl_matrix_uint_subdiagonal (gsl_matrix_uint * m, const size_t k);
+
+_gsl_vector_uint_view 
+gsl_matrix_uint_superdiagonal (gsl_matrix_uint * m, const size_t k);
+
+_gsl_vector_uint_view
+gsl_matrix_uint_subrow (gsl_matrix_uint * m, const size_t i,
+                         const size_t offset, const size_t n);
+
+_gsl_vector_uint_view
+gsl_matrix_uint_subcolumn (gsl_matrix_uint * m, const size_t j,
+                            const size_t offset, const size_t n);
+
+_gsl_matrix_uint_view
+gsl_matrix_uint_view_array (unsigned int * base,
+                             const size_t n1, 
+                             const size_t n2);
+
+_gsl_matrix_uint_view
+gsl_matrix_uint_view_array_with_tda (unsigned int * base, 
+                                      const size_t n1, 
+                                      const size_t n2,
+                                      const size_t tda);
+
+
+_gsl_matrix_uint_view
+gsl_matrix_uint_view_vector (gsl_vector_uint * v,
+                              const size_t n1, 
+                              const size_t n2);
+
+_gsl_matrix_uint_view
+gsl_matrix_uint_view_vector_with_tda (gsl_vector_uint * v,
+                                       const size_t n1, 
+                                       const size_t n2,
+                                       const size_t tda);
+
+
+_gsl_matrix_uint_const_view 
+gsl_matrix_uint_const_submatrix (const gsl_matrix_uint * m, 
+                                  const size_t i, const size_t j, 
+                                  const size_t n1, const size_t n2);
+
+_gsl_vector_uint_const_view 
+gsl_matrix_uint_const_row (const gsl_matrix_uint * m, 
+                            const size_t i);
+
+_gsl_vector_uint_const_view 
+gsl_matrix_uint_const_column (const gsl_matrix_uint * m, 
+                               const size_t j);
+
+_gsl_vector_uint_const_view
+gsl_matrix_uint_const_diagonal (const gsl_matrix_uint * m);
+
+_gsl_vector_uint_const_view 
+gsl_matrix_uint_const_subdiagonal (const gsl_matrix_uint * m, 
+                                    const size_t k);
+
+_gsl_vector_uint_const_view 
+gsl_matrix_uint_const_superdiagonal (const gsl_matrix_uint * m, 
+                                      const size_t k);
+
+_gsl_vector_uint_const_view
+gsl_matrix_uint_const_subrow (const gsl_matrix_uint * m, const size_t i,
+                               const size_t offset, const size_t n);
+
+_gsl_vector_uint_const_view
+gsl_matrix_uint_const_subcolumn (const gsl_matrix_uint * m, const size_t j,
+                                  const size_t offset, const size_t n);
+
+_gsl_matrix_uint_const_view
+gsl_matrix_uint_const_view_array (const unsigned int * base,
+                                   const size_t n1, 
+                                   const size_t n2);
+
+_gsl_matrix_uint_const_view
+gsl_matrix_uint_const_view_array_with_tda (const unsigned int * base, 
+                                            const size_t n1, 
+                                            const size_t n2,
+                                            const size_t tda);
+
+_gsl_matrix_uint_const_view
+gsl_matrix_uint_const_view_vector (const gsl_vector_uint * v,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+_gsl_matrix_uint_const_view
+gsl_matrix_uint_const_view_vector_with_tda (const gsl_vector_uint * v,
+                                             const size_t n1, 
+                                             const size_t n2,
+                                             const size_t tda);
+
+/* Operations */
+
+void gsl_matrix_uint_set_zero (gsl_matrix_uint * m);
+void gsl_matrix_uint_set_identity (gsl_matrix_uint * m);
+void gsl_matrix_uint_set_all (gsl_matrix_uint * m, unsigned int x);
+
+int gsl_matrix_uint_fread (FILE * stream, gsl_matrix_uint * m) ;
+int gsl_matrix_uint_fwrite (FILE * stream, const gsl_matrix_uint * m) ;
+int gsl_matrix_uint_fscanf (FILE * stream, gsl_matrix_uint * m);
+int gsl_matrix_uint_fprintf (FILE * stream, const gsl_matrix_uint * m, const char * format);
+ 
+int gsl_matrix_uint_memcpy(gsl_matrix_uint * dest, const gsl_matrix_uint * src);
+int gsl_matrix_uint_swap(gsl_matrix_uint * m1, gsl_matrix_uint * m2);
+
+int gsl_matrix_uint_swap_rows(gsl_matrix_uint * m, const size_t i, const size_t j);
+int gsl_matrix_uint_swap_columns(gsl_matrix_uint * m, const size_t i, const size_t j);
+int gsl_matrix_uint_swap_rowcol(gsl_matrix_uint * m, const size_t i, const size_t j);
+int gsl_matrix_uint_transpose (gsl_matrix_uint * m);
+int gsl_matrix_uint_transpose_memcpy (gsl_matrix_uint * dest, const gsl_matrix_uint * src);
+
+unsigned int gsl_matrix_uint_max (const gsl_matrix_uint * m);
+unsigned int gsl_matrix_uint_min (const gsl_matrix_uint * m);
+void gsl_matrix_uint_minmax (const gsl_matrix_uint * m, unsigned int * min_out, unsigned int * max_out);
+
+void gsl_matrix_uint_max_index (const gsl_matrix_uint * m, size_t * imax, size_t *jmax);
+void gsl_matrix_uint_min_index (const gsl_matrix_uint * m, size_t * imin, size_t *jmin);
+void gsl_matrix_uint_minmax_index (const gsl_matrix_uint * m, size_t * imin, size_t * jmin, size_t * imax, size_t * jmax);
+
+int gsl_matrix_uint_equal (const gsl_matrix_uint * a, const gsl_matrix_uint * b);
+
+int gsl_matrix_uint_isnull (const gsl_matrix_uint * m);
+int gsl_matrix_uint_ispos (const gsl_matrix_uint * m);
+int gsl_matrix_uint_isneg (const gsl_matrix_uint * m);
+int gsl_matrix_uint_isnonneg (const gsl_matrix_uint * m);
+
+int gsl_matrix_uint_add (gsl_matrix_uint * a, const gsl_matrix_uint * b);
+int gsl_matrix_uint_sub (gsl_matrix_uint * a, const gsl_matrix_uint * b);
+int gsl_matrix_uint_mul_elements (gsl_matrix_uint * a, const gsl_matrix_uint * b);
+int gsl_matrix_uint_div_elements (gsl_matrix_uint * a, const gsl_matrix_uint * b);
+int gsl_matrix_uint_scale (gsl_matrix_uint * a, const double x);
+int gsl_matrix_uint_add_constant (gsl_matrix_uint * a, const double x);
+int gsl_matrix_uint_add_diagonal (gsl_matrix_uint * a, const double x);
+
+/***********************************************************************/
+/* The functions below are obsolete                                    */
+/***********************************************************************/
+int gsl_matrix_uint_get_row(gsl_vector_uint * v, const gsl_matrix_uint * m, const size_t i);
+int gsl_matrix_uint_get_col(gsl_vector_uint * v, const gsl_matrix_uint * m, const size_t j);
+int gsl_matrix_uint_set_row(gsl_matrix_uint * m, const size_t i, const gsl_vector_uint * v);
+int gsl_matrix_uint_set_col(gsl_matrix_uint * m, const size_t j, const gsl_vector_uint * v);
+/***********************************************************************/
+
+/* inline functions if you are using GCC */
+
+INLINE_DECL unsigned int   gsl_matrix_uint_get(const gsl_matrix_uint * m, const size_t i, const size_t j);
+INLINE_DECL void    gsl_matrix_uint_set(gsl_matrix_uint * m, const size_t i, const size_t j, const unsigned int x);
+INLINE_DECL unsigned int * gsl_matrix_uint_ptr(gsl_matrix_uint * m, const size_t i, const size_t j);
+INLINE_DECL const unsigned int * gsl_matrix_uint_const_ptr(const gsl_matrix_uint * m, const size_t i, const size_t j);
+
+#ifdef HAVE_INLINE
+INLINE_FUN 
+unsigned int
+gsl_matrix_uint_get(const gsl_matrix_uint * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VAL("first index out of range", GSL_EINVAL, 0) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VAL("second index out of range", GSL_EINVAL, 0) ;
+        }
+    }
+#endif
+  return m->data[i * m->tda + j] ;
+} 
+
+INLINE_FUN 
+void
+gsl_matrix_uint_set(gsl_matrix_uint * m, const size_t i, const size_t j, const unsigned int x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VOID("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VOID("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  m->data[i * m->tda + j] = x ;
+}
+
+INLINE_FUN 
+unsigned int *
+gsl_matrix_uint_ptr(gsl_matrix_uint * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (unsigned int *) (m->data + (i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+const unsigned int *
+gsl_matrix_uint_const_ptr(const gsl_matrix_uint * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (const unsigned int *) (m->data + (i * m->tda + j)) ;
+} 
+
+#endif
+
+__END_DECLS
+
+#endif /* __GSL_MATRIX_UINT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix_ulong.h b/util/X86LINUX64/include/gsl/gsl_matrix_ulong.h
new file mode 100644 (file)
index 0000000..2424068
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix_ulong.h
@@ -0,0 +1,350 @@
+/* matrix/gsl_matrix_ulong.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATRIX_ULONG_H__
+#define __GSL_MATRIX_ULONG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_ulong.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size1;
+  size_t size2;
+  size_t tda;
+  unsigned long * data;
+  gsl_block_ulong * block;
+  int owner;
+} gsl_matrix_ulong;
+
+typedef struct
+{
+  gsl_matrix_ulong matrix;
+} _gsl_matrix_ulong_view;
+
+typedef _gsl_matrix_ulong_view gsl_matrix_ulong_view;
+
+typedef struct
+{
+  gsl_matrix_ulong matrix;
+} _gsl_matrix_ulong_const_view;
+
+typedef const _gsl_matrix_ulong_const_view gsl_matrix_ulong_const_view;
+
+/* Allocation */
+
+gsl_matrix_ulong * 
+gsl_matrix_ulong_alloc (const size_t n1, const size_t n2);
+
+gsl_matrix_ulong * 
+gsl_matrix_ulong_calloc (const size_t n1, const size_t n2);
+
+gsl_matrix_ulong * 
+gsl_matrix_ulong_alloc_from_block (gsl_block_ulong * b, 
+                                   const size_t offset, 
+                                   const size_t n1, 
+                                   const size_t n2, 
+                                   const size_t d2);
+
+gsl_matrix_ulong * 
+gsl_matrix_ulong_alloc_from_matrix (gsl_matrix_ulong * m,
+                                    const size_t k1, 
+                                    const size_t k2,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+gsl_vector_ulong * 
+gsl_vector_ulong_alloc_row_from_matrix (gsl_matrix_ulong * m,
+                                        const size_t i);
+
+gsl_vector_ulong * 
+gsl_vector_ulong_alloc_col_from_matrix (gsl_matrix_ulong * m,
+                                        const size_t j);
+
+void gsl_matrix_ulong_free (gsl_matrix_ulong * m);
+
+/* Views */
+
+_gsl_matrix_ulong_view 
+gsl_matrix_ulong_submatrix (gsl_matrix_ulong * m, 
+                            const size_t i, const size_t j, 
+                            const size_t n1, const size_t n2);
+
+_gsl_vector_ulong_view 
+gsl_matrix_ulong_row (gsl_matrix_ulong * m, const size_t i);
+
+_gsl_vector_ulong_view 
+gsl_matrix_ulong_column (gsl_matrix_ulong * m, const size_t j);
+
+_gsl_vector_ulong_view 
+gsl_matrix_ulong_diagonal (gsl_matrix_ulong * m);
+
+_gsl_vector_ulong_view 
+gsl_matrix_ulong_subdiagonal (gsl_matrix_ulong * m, const size_t k);
+
+_gsl_vector_ulong_view 
+gsl_matrix_ulong_superdiagonal (gsl_matrix_ulong * m, const size_t k);
+
+_gsl_vector_ulong_view
+gsl_matrix_ulong_subrow (gsl_matrix_ulong * m, const size_t i,
+                         const size_t offset, const size_t n);
+
+_gsl_vector_ulong_view
+gsl_matrix_ulong_subcolumn (gsl_matrix_ulong * m, const size_t j,
+                            const size_t offset, const size_t n);
+
+_gsl_matrix_ulong_view
+gsl_matrix_ulong_view_array (unsigned long * base,
+                             const size_t n1, 
+                             const size_t n2);
+
+_gsl_matrix_ulong_view
+gsl_matrix_ulong_view_array_with_tda (unsigned long * base, 
+                                      const size_t n1, 
+                                      const size_t n2,
+                                      const size_t tda);
+
+
+_gsl_matrix_ulong_view
+gsl_matrix_ulong_view_vector (gsl_vector_ulong * v,
+                              const size_t n1, 
+                              const size_t n2);
+
+_gsl_matrix_ulong_view
+gsl_matrix_ulong_view_vector_with_tda (gsl_vector_ulong * v,
+                                       const size_t n1, 
+                                       const size_t n2,
+                                       const size_t tda);
+
+
+_gsl_matrix_ulong_const_view 
+gsl_matrix_ulong_const_submatrix (const gsl_matrix_ulong * m, 
+                                  const size_t i, const size_t j, 
+                                  const size_t n1, const size_t n2);
+
+_gsl_vector_ulong_const_view 
+gsl_matrix_ulong_const_row (const gsl_matrix_ulong * m, 
+                            const size_t i);
+
+_gsl_vector_ulong_const_view 
+gsl_matrix_ulong_const_column (const gsl_matrix_ulong * m, 
+                               const size_t j);
+
+_gsl_vector_ulong_const_view
+gsl_matrix_ulong_const_diagonal (const gsl_matrix_ulong * m);
+
+_gsl_vector_ulong_const_view 
+gsl_matrix_ulong_const_subdiagonal (const gsl_matrix_ulong * m, 
+                                    const size_t k);
+
+_gsl_vector_ulong_const_view 
+gsl_matrix_ulong_const_superdiagonal (const gsl_matrix_ulong * m, 
+                                      const size_t k);
+
+_gsl_vector_ulong_const_view
+gsl_matrix_ulong_const_subrow (const gsl_matrix_ulong * m, const size_t i,
+                               const size_t offset, const size_t n);
+
+_gsl_vector_ulong_const_view
+gsl_matrix_ulong_const_subcolumn (const gsl_matrix_ulong * m, const size_t j,
+                                  const size_t offset, const size_t n);
+
+_gsl_matrix_ulong_const_view
+gsl_matrix_ulong_const_view_array (const unsigned long * base,
+                                   const size_t n1, 
+                                   const size_t n2);
+
+_gsl_matrix_ulong_const_view
+gsl_matrix_ulong_const_view_array_with_tda (const unsigned long * base, 
+                                            const size_t n1, 
+                                            const size_t n2,
+                                            const size_t tda);
+
+_gsl_matrix_ulong_const_view
+gsl_matrix_ulong_const_view_vector (const gsl_vector_ulong * v,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+_gsl_matrix_ulong_const_view
+gsl_matrix_ulong_const_view_vector_with_tda (const gsl_vector_ulong * v,
+                                             const size_t n1, 
+                                             const size_t n2,
+                                             const size_t tda);
+
+/* Operations */
+
+void gsl_matrix_ulong_set_zero (gsl_matrix_ulong * m);
+void gsl_matrix_ulong_set_identity (gsl_matrix_ulong * m);
+void gsl_matrix_ulong_set_all (gsl_matrix_ulong * m, unsigned long x);
+
+int gsl_matrix_ulong_fread (FILE * stream, gsl_matrix_ulong * m) ;
+int gsl_matrix_ulong_fwrite (FILE * stream, const gsl_matrix_ulong * m) ;
+int gsl_matrix_ulong_fscanf (FILE * stream, gsl_matrix_ulong * m);
+int gsl_matrix_ulong_fprintf (FILE * stream, const gsl_matrix_ulong * m, const char * format);
+ 
+int gsl_matrix_ulong_memcpy(gsl_matrix_ulong * dest, const gsl_matrix_ulong * src);
+int gsl_matrix_ulong_swap(gsl_matrix_ulong * m1, gsl_matrix_ulong * m2);
+
+int gsl_matrix_ulong_swap_rows(gsl_matrix_ulong * m, const size_t i, const size_t j);
+int gsl_matrix_ulong_swap_columns(gsl_matrix_ulong * m, const size_t i, const size_t j);
+int gsl_matrix_ulong_swap_rowcol(gsl_matrix_ulong * m, const size_t i, const size_t j);
+int gsl_matrix_ulong_transpose (gsl_matrix_ulong * m);
+int gsl_matrix_ulong_transpose_memcpy (gsl_matrix_ulong * dest, const gsl_matrix_ulong * src);
+
+unsigned long gsl_matrix_ulong_max (const gsl_matrix_ulong * m);
+unsigned long gsl_matrix_ulong_min (const gsl_matrix_ulong * m);
+void gsl_matrix_ulong_minmax (const gsl_matrix_ulong * m, unsigned long * min_out, unsigned long * max_out);
+
+void gsl_matrix_ulong_max_index (const gsl_matrix_ulong * m, size_t * imax, size_t *jmax);
+void gsl_matrix_ulong_min_index (const gsl_matrix_ulong * m, size_t * imin, size_t *jmin);
+void gsl_matrix_ulong_minmax_index (const gsl_matrix_ulong * m, size_t * imin, size_t * jmin, size_t * imax, size_t * jmax);
+
+int gsl_matrix_ulong_equal (const gsl_matrix_ulong * a, const gsl_matrix_ulong * b);
+
+int gsl_matrix_ulong_isnull (const gsl_matrix_ulong * m);
+int gsl_matrix_ulong_ispos (const gsl_matrix_ulong * m);
+int gsl_matrix_ulong_isneg (const gsl_matrix_ulong * m);
+int gsl_matrix_ulong_isnonneg (const gsl_matrix_ulong * m);
+
+int gsl_matrix_ulong_add (gsl_matrix_ulong * a, const gsl_matrix_ulong * b);
+int gsl_matrix_ulong_sub (gsl_matrix_ulong * a, const gsl_matrix_ulong * b);
+int gsl_matrix_ulong_mul_elements (gsl_matrix_ulong * a, const gsl_matrix_ulong * b);
+int gsl_matrix_ulong_div_elements (gsl_matrix_ulong * a, const gsl_matrix_ulong * b);
+int gsl_matrix_ulong_scale (gsl_matrix_ulong * a, const double x);
+int gsl_matrix_ulong_add_constant (gsl_matrix_ulong * a, const double x);
+int gsl_matrix_ulong_add_diagonal (gsl_matrix_ulong * a, const double x);
+
+/***********************************************************************/
+/* The functions below are obsolete                                    */
+/***********************************************************************/
+int gsl_matrix_ulong_get_row(gsl_vector_ulong * v, const gsl_matrix_ulong * m, const size_t i);
+int gsl_matrix_ulong_get_col(gsl_vector_ulong * v, const gsl_matrix_ulong * m, const size_t j);
+int gsl_matrix_ulong_set_row(gsl_matrix_ulong * m, const size_t i, const gsl_vector_ulong * v);
+int gsl_matrix_ulong_set_col(gsl_matrix_ulong * m, const size_t j, const gsl_vector_ulong * v);
+/***********************************************************************/
+
+/* inline functions if you are using GCC */
+
+INLINE_DECL unsigned long   gsl_matrix_ulong_get(const gsl_matrix_ulong * m, const size_t i, const size_t j);
+INLINE_DECL void    gsl_matrix_ulong_set(gsl_matrix_ulong * m, const size_t i, const size_t j, const unsigned long x);
+INLINE_DECL unsigned long * gsl_matrix_ulong_ptr(gsl_matrix_ulong * m, const size_t i, const size_t j);
+INLINE_DECL const unsigned long * gsl_matrix_ulong_const_ptr(const gsl_matrix_ulong * m, const size_t i, const size_t j);
+
+#ifdef HAVE_INLINE
+INLINE_FUN 
+unsigned long
+gsl_matrix_ulong_get(const gsl_matrix_ulong * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VAL("first index out of range", GSL_EINVAL, 0) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VAL("second index out of range", GSL_EINVAL, 0) ;
+        }
+    }
+#endif
+  return m->data[i * m->tda + j] ;
+} 
+
+INLINE_FUN 
+void
+gsl_matrix_ulong_set(gsl_matrix_ulong * m, const size_t i, const size_t j, const unsigned long x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VOID("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VOID("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  m->data[i * m->tda + j] = x ;
+}
+
+INLINE_FUN 
+unsigned long *
+gsl_matrix_ulong_ptr(gsl_matrix_ulong * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (unsigned long *) (m->data + (i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+const unsigned long *
+gsl_matrix_ulong_const_ptr(const gsl_matrix_ulong * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (const unsigned long *) (m->data + (i * m->tda + j)) ;
+} 
+
+#endif
+
+__END_DECLS
+
+#endif /* __GSL_MATRIX_ULONG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_matrix_ushort.h b/util/X86LINUX64/include/gsl/gsl_matrix_ushort.h
new file mode 100644 (file)
index 0000000..422b394
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_matrix_ushort.h
@@ -0,0 +1,350 @@
+/* matrix/gsl_matrix_ushort.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MATRIX_USHORT_H__
+#define __GSL_MATRIX_USHORT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_ushort.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size1;
+  size_t size2;
+  size_t tda;
+  unsigned short * data;
+  gsl_block_ushort * block;
+  int owner;
+} gsl_matrix_ushort;
+
+typedef struct
+{
+  gsl_matrix_ushort matrix;
+} _gsl_matrix_ushort_view;
+
+typedef _gsl_matrix_ushort_view gsl_matrix_ushort_view;
+
+typedef struct
+{
+  gsl_matrix_ushort matrix;
+} _gsl_matrix_ushort_const_view;
+
+typedef const _gsl_matrix_ushort_const_view gsl_matrix_ushort_const_view;
+
+/* Allocation */
+
+gsl_matrix_ushort * 
+gsl_matrix_ushort_alloc (const size_t n1, const size_t n2);
+
+gsl_matrix_ushort * 
+gsl_matrix_ushort_calloc (const size_t n1, const size_t n2);
+
+gsl_matrix_ushort * 
+gsl_matrix_ushort_alloc_from_block (gsl_block_ushort * b, 
+                                   const size_t offset, 
+                                   const size_t n1, 
+                                   const size_t n2, 
+                                   const size_t d2);
+
+gsl_matrix_ushort * 
+gsl_matrix_ushort_alloc_from_matrix (gsl_matrix_ushort * m,
+                                    const size_t k1, 
+                                    const size_t k2,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+gsl_vector_ushort * 
+gsl_vector_ushort_alloc_row_from_matrix (gsl_matrix_ushort * m,
+                                        const size_t i);
+
+gsl_vector_ushort * 
+gsl_vector_ushort_alloc_col_from_matrix (gsl_matrix_ushort * m,
+                                        const size_t j);
+
+void gsl_matrix_ushort_free (gsl_matrix_ushort * m);
+
+/* Views */
+
+_gsl_matrix_ushort_view 
+gsl_matrix_ushort_submatrix (gsl_matrix_ushort * m, 
+                            const size_t i, const size_t j, 
+                            const size_t n1, const size_t n2);
+
+_gsl_vector_ushort_view 
+gsl_matrix_ushort_row (gsl_matrix_ushort * m, const size_t i);
+
+_gsl_vector_ushort_view 
+gsl_matrix_ushort_column (gsl_matrix_ushort * m, const size_t j);
+
+_gsl_vector_ushort_view 
+gsl_matrix_ushort_diagonal (gsl_matrix_ushort * m);
+
+_gsl_vector_ushort_view 
+gsl_matrix_ushort_subdiagonal (gsl_matrix_ushort * m, const size_t k);
+
+_gsl_vector_ushort_view 
+gsl_matrix_ushort_superdiagonal (gsl_matrix_ushort * m, const size_t k);
+
+_gsl_vector_ushort_view
+gsl_matrix_ushort_subrow (gsl_matrix_ushort * m, const size_t i,
+                         const size_t offset, const size_t n);
+
+_gsl_vector_ushort_view
+gsl_matrix_ushort_subcolumn (gsl_matrix_ushort * m, const size_t j,
+                            const size_t offset, const size_t n);
+
+_gsl_matrix_ushort_view
+gsl_matrix_ushort_view_array (unsigned short * base,
+                             const size_t n1, 
+                             const size_t n2);
+
+_gsl_matrix_ushort_view
+gsl_matrix_ushort_view_array_with_tda (unsigned short * base, 
+                                      const size_t n1, 
+                                      const size_t n2,
+                                      const size_t tda);
+
+
+_gsl_matrix_ushort_view
+gsl_matrix_ushort_view_vector (gsl_vector_ushort * v,
+                              const size_t n1, 
+                              const size_t n2);
+
+_gsl_matrix_ushort_view
+gsl_matrix_ushort_view_vector_with_tda (gsl_vector_ushort * v,
+                                       const size_t n1, 
+                                       const size_t n2,
+                                       const size_t tda);
+
+
+_gsl_matrix_ushort_const_view 
+gsl_matrix_ushort_const_submatrix (const gsl_matrix_ushort * m, 
+                                  const size_t i, const size_t j, 
+                                  const size_t n1, const size_t n2);
+
+_gsl_vector_ushort_const_view 
+gsl_matrix_ushort_const_row (const gsl_matrix_ushort * m, 
+                            const size_t i);
+
+_gsl_vector_ushort_const_view 
+gsl_matrix_ushort_const_column (const gsl_matrix_ushort * m, 
+                               const size_t j);
+
+_gsl_vector_ushort_const_view
+gsl_matrix_ushort_const_diagonal (const gsl_matrix_ushort * m);
+
+_gsl_vector_ushort_const_view 
+gsl_matrix_ushort_const_subdiagonal (const gsl_matrix_ushort * m, 
+                                    const size_t k);
+
+_gsl_vector_ushort_const_view 
+gsl_matrix_ushort_const_superdiagonal (const gsl_matrix_ushort * m, 
+                                      const size_t k);
+
+_gsl_vector_ushort_const_view
+gsl_matrix_ushort_const_subrow (const gsl_matrix_ushort * m, const size_t i,
+                               const size_t offset, const size_t n);
+
+_gsl_vector_ushort_const_view
+gsl_matrix_ushort_const_subcolumn (const gsl_matrix_ushort * m, const size_t j,
+                                  const size_t offset, const size_t n);
+
+_gsl_matrix_ushort_const_view
+gsl_matrix_ushort_const_view_array (const unsigned short * base,
+                                   const size_t n1, 
+                                   const size_t n2);
+
+_gsl_matrix_ushort_const_view
+gsl_matrix_ushort_const_view_array_with_tda (const unsigned short * base, 
+                                            const size_t n1, 
+                                            const size_t n2,
+                                            const size_t tda);
+
+_gsl_matrix_ushort_const_view
+gsl_matrix_ushort_const_view_vector (const gsl_vector_ushort * v,
+                                    const size_t n1, 
+                                    const size_t n2);
+
+_gsl_matrix_ushort_const_view
+gsl_matrix_ushort_const_view_vector_with_tda (const gsl_vector_ushort * v,
+                                             const size_t n1, 
+                                             const size_t n2,
+                                             const size_t tda);
+
+/* Operations */
+
+void gsl_matrix_ushort_set_zero (gsl_matrix_ushort * m);
+void gsl_matrix_ushort_set_identity (gsl_matrix_ushort * m);
+void gsl_matrix_ushort_set_all (gsl_matrix_ushort * m, unsigned short x);
+
+int gsl_matrix_ushort_fread (FILE * stream, gsl_matrix_ushort * m) ;
+int gsl_matrix_ushort_fwrite (FILE * stream, const gsl_matrix_ushort * m) ;
+int gsl_matrix_ushort_fscanf (FILE * stream, gsl_matrix_ushort * m);
+int gsl_matrix_ushort_fprintf (FILE * stream, const gsl_matrix_ushort * m, const char * format);
+ 
+int gsl_matrix_ushort_memcpy(gsl_matrix_ushort * dest, const gsl_matrix_ushort * src);
+int gsl_matrix_ushort_swap(gsl_matrix_ushort * m1, gsl_matrix_ushort * m2);
+
+int gsl_matrix_ushort_swap_rows(gsl_matrix_ushort * m, const size_t i, const size_t j);
+int gsl_matrix_ushort_swap_columns(gsl_matrix_ushort * m, const size_t i, const size_t j);
+int gsl_matrix_ushort_swap_rowcol(gsl_matrix_ushort * m, const size_t i, const size_t j);
+int gsl_matrix_ushort_transpose (gsl_matrix_ushort * m);
+int gsl_matrix_ushort_transpose_memcpy (gsl_matrix_ushort * dest, const gsl_matrix_ushort * src);
+
+unsigned short gsl_matrix_ushort_max (const gsl_matrix_ushort * m);
+unsigned short gsl_matrix_ushort_min (const gsl_matrix_ushort * m);
+void gsl_matrix_ushort_minmax (const gsl_matrix_ushort * m, unsigned short * min_out, unsigned short * max_out);
+
+void gsl_matrix_ushort_max_index (const gsl_matrix_ushort * m, size_t * imax, size_t *jmax);
+void gsl_matrix_ushort_min_index (const gsl_matrix_ushort * m, size_t * imin, size_t *jmin);
+void gsl_matrix_ushort_minmax_index (const gsl_matrix_ushort * m, size_t * imin, size_t * jmin, size_t * imax, size_t * jmax);
+
+int gsl_matrix_ushort_equal (const gsl_matrix_ushort * a, const gsl_matrix_ushort * b);
+
+int gsl_matrix_ushort_isnull (const gsl_matrix_ushort * m);
+int gsl_matrix_ushort_ispos (const gsl_matrix_ushort * m);
+int gsl_matrix_ushort_isneg (const gsl_matrix_ushort * m);
+int gsl_matrix_ushort_isnonneg (const gsl_matrix_ushort * m);
+
+int gsl_matrix_ushort_add (gsl_matrix_ushort * a, const gsl_matrix_ushort * b);
+int gsl_matrix_ushort_sub (gsl_matrix_ushort * a, const gsl_matrix_ushort * b);
+int gsl_matrix_ushort_mul_elements (gsl_matrix_ushort * a, const gsl_matrix_ushort * b);
+int gsl_matrix_ushort_div_elements (gsl_matrix_ushort * a, const gsl_matrix_ushort * b);
+int gsl_matrix_ushort_scale (gsl_matrix_ushort * a, const double x);
+int gsl_matrix_ushort_add_constant (gsl_matrix_ushort * a, const double x);
+int gsl_matrix_ushort_add_diagonal (gsl_matrix_ushort * a, const double x);
+
+/***********************************************************************/
+/* The functions below are obsolete                                    */
+/***********************************************************************/
+int gsl_matrix_ushort_get_row(gsl_vector_ushort * v, const gsl_matrix_ushort * m, const size_t i);
+int gsl_matrix_ushort_get_col(gsl_vector_ushort * v, const gsl_matrix_ushort * m, const size_t j);
+int gsl_matrix_ushort_set_row(gsl_matrix_ushort * m, const size_t i, const gsl_vector_ushort * v);
+int gsl_matrix_ushort_set_col(gsl_matrix_ushort * m, const size_t j, const gsl_vector_ushort * v);
+/***********************************************************************/
+
+/* inline functions if you are using GCC */
+
+INLINE_DECL unsigned short   gsl_matrix_ushort_get(const gsl_matrix_ushort * m, const size_t i, const size_t j);
+INLINE_DECL void    gsl_matrix_ushort_set(gsl_matrix_ushort * m, const size_t i, const size_t j, const unsigned short x);
+INLINE_DECL unsigned short * gsl_matrix_ushort_ptr(gsl_matrix_ushort * m, const size_t i, const size_t j);
+INLINE_DECL const unsigned short * gsl_matrix_ushort_const_ptr(const gsl_matrix_ushort * m, const size_t i, const size_t j);
+
+#ifdef HAVE_INLINE
+INLINE_FUN 
+unsigned short
+gsl_matrix_ushort_get(const gsl_matrix_ushort * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VAL("first index out of range", GSL_EINVAL, 0) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VAL("second index out of range", GSL_EINVAL, 0) ;
+        }
+    }
+#endif
+  return m->data[i * m->tda + j] ;
+} 
+
+INLINE_FUN 
+void
+gsl_matrix_ushort_set(gsl_matrix_ushort * m, const size_t i, const size_t j, const unsigned short x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_VOID("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_VOID("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  m->data[i * m->tda + j] = x ;
+}
+
+INLINE_FUN 
+unsigned short *
+gsl_matrix_ushort_ptr(gsl_matrix_ushort * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (unsigned short *) (m->data + (i * m->tda + j)) ;
+} 
+
+INLINE_FUN 
+const unsigned short *
+gsl_matrix_ushort_const_ptr(const gsl_matrix_ushort * m, const size_t i, const size_t j)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(1)) 
+    {
+      if (i >= m->size1)
+        {
+          GSL_ERROR_NULL("first index out of range", GSL_EINVAL) ;
+        }
+      else if (j >= m->size2)
+        {
+          GSL_ERROR_NULL("second index out of range", GSL_EINVAL) ;
+        }
+    }
+#endif
+  return (const unsigned short *) (m->data + (i * m->tda + j)) ;
+} 
+
+#endif
+
+__END_DECLS
+
+#endif /* __GSL_MATRIX_USHORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_message.h b/util/X86LINUX64/include/gsl/gsl_message.h
new file mode 100644 (file)
index 0000000..166ff9d
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_message.h
@@ -0,0 +1,80 @@
+/* err/gsl_message.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MESSAGE_H__
+#define __GSL_MESSAGE_H__
+#include <gsl/gsl_types.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/* Provide a general messaging service for client use.  Messages can
+ * be selectively turned off at compile time by defining an
+ * appropriate message mask. Client code which uses the GSL_MESSAGE()
+ * macro must provide a mask which is or'ed with the GSL_MESSAGE_MASK.
+ *
+ * The messaging service can be completely turned off
+ * by defining GSL_MESSAGING_OFF.  */
+
+void gsl_message(const char * message, const char * file, int line,
+                 unsigned int mask);
+
+#ifndef GSL_MESSAGE_MASK
+#define GSL_MESSAGE_MASK 0xffffffffu /* default all messages allowed */
+#endif
+
+GSL_VAR unsigned int gsl_message_mask ;
+
+/* Provide some symolic masks for client ease of use. */
+
+enum {
+  GSL_MESSAGE_MASK_A = 1,
+  GSL_MESSAGE_MASK_B = 2,
+  GSL_MESSAGE_MASK_C = 4,
+  GSL_MESSAGE_MASK_D = 8,
+  GSL_MESSAGE_MASK_E = 16,
+  GSL_MESSAGE_MASK_F = 32,
+  GSL_MESSAGE_MASK_G = 64,
+  GSL_MESSAGE_MASK_H = 128
+} ;
+
+#ifdef GSL_MESSAGING_OFF        /* throw away messages */ 
+#define GSL_MESSAGE(message, mask) do { } while(0)
+#else                           /* output all messages */
+#define GSL_MESSAGE(message, mask) \
+       do { \
+       if (mask & GSL_MESSAGE_MASK) \
+         gsl_message (message, __FILE__, __LINE__, mask) ; \
+       } while (0)
+#endif
+
+__END_DECLS
+
+#endif /* __GSL_MESSAGE_H__ */
+
+

diff --git a/util/X86LINUX64/include/gsl/gsl_min.h b/util/X86LINUX64/include/gsl/gsl_min.h
new file mode 100644 (file)
index 0000000..c179572
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_min.h
@@ -0,0 +1,111 @@
+/* min/gsl_min.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007, 2009 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MIN_H__
+#define __GSL_MIN_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_math.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct
+  {
+    const char *name;
+    size_t size;
+    int (*set) (void *state, gsl_function * f, double x_minimum, double f_minimum, double x_lower, double f_lower, double x_upper, double f_upper);
+    int (*iterate) (void *state, gsl_function * f, double * x_minimum, double * f_minimum, double * x_lower, double * f_lower, double * x_upper, double * f_upper);
+  }
+gsl_min_fminimizer_type;
+
+typedef struct
+  {
+    const gsl_min_fminimizer_type * type;
+    gsl_function * function ;
+    double x_minimum ;
+    double x_lower ;
+    double x_upper ;
+    double f_minimum, f_lower, f_upper;
+    void *state;
+  }
+gsl_min_fminimizer;
+
+gsl_min_fminimizer *
+gsl_min_fminimizer_alloc (const gsl_min_fminimizer_type * T) ;
+                                      
+void gsl_min_fminimizer_free (gsl_min_fminimizer * s);
+
+int gsl_min_fminimizer_set (gsl_min_fminimizer * s, 
+                            gsl_function * f, double x_minimum, 
+                            double x_lower, double x_upper);
+
+int gsl_min_fminimizer_set_with_values (gsl_min_fminimizer * s, 
+                                        gsl_function * f, 
+                                        double x_minimum, double f_minimum,
+                                        double x_lower, double f_lower,
+                                        double x_upper, double f_upper);
+
+int gsl_min_fminimizer_iterate (gsl_min_fminimizer * s);
+
+const char * gsl_min_fminimizer_name (const gsl_min_fminimizer * s);
+
+double gsl_min_fminimizer_x_minimum (const gsl_min_fminimizer * s);
+double gsl_min_fminimizer_x_lower (const gsl_min_fminimizer * s);
+double gsl_min_fminimizer_x_upper (const gsl_min_fminimizer * s);
+double gsl_min_fminimizer_f_minimum (const gsl_min_fminimizer * s);
+double gsl_min_fminimizer_f_lower (const gsl_min_fminimizer * s);
+double gsl_min_fminimizer_f_upper (const gsl_min_fminimizer * s);
+
+/* Deprecated, use x_minimum instead */
+double gsl_min_fminimizer_minimum (const gsl_min_fminimizer * s);
+
+int
+gsl_min_test_interval (double x_lower, double x_upper, double epsabs, double epsrel);
+
+GSL_VAR const gsl_min_fminimizer_type  * gsl_min_fminimizer_goldensection;
+GSL_VAR const gsl_min_fminimizer_type  * gsl_min_fminimizer_brent;
+GSL_VAR const gsl_min_fminimizer_type  * gsl_min_fminimizer_quad_golden;
+
+typedef
+int (*gsl_min_bracketing_function)(gsl_function *f,
+                                   double *x_minimum,double * f_minimum,
+                                   double *x_lower, double * f_lower,
+                                   double *x_upper, double * f_upper,
+                                   size_t eval_max);
+
+int 
+gsl_min_find_bracket(gsl_function *f,double *x_minimum,double * f_minimum,
+                     double *x_lower, double * f_lower,
+                     double *x_upper, double * f_upper,
+                     size_t eval_max);
+
+__END_DECLS
+
+#endif /* __GSL_MIN_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_minmax.h b/util/X86LINUX64/include/gsl/gsl_minmax.h
new file mode 100644 (file)
index 0000000..0d9a836
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_minmax.h
@@ -0,0 +1,102 @@
+/* gsl_minmax.h
+ * 
+ * Copyright (C) 2008 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MINMAX_H__
+#define __GSL_MINMAX_H__
+#include <gsl/gsl_inline.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/* Define MAX and MIN macros/functions if they don't exist. */
+
+/* plain old macros for general use */
+#define GSL_MAX(a,b) ((a) > (b) ? (a) : (b))
+#define GSL_MIN(a,b) ((a) < (b) ? (a) : (b))
+
+/* function versions of the above, in case they are needed */
+double gsl_max (double a, double b);
+double gsl_min (double a, double b);
+
+/* inline-friendly strongly typed versions */
+#ifdef HAVE_INLINE
+
+INLINE_FUN int GSL_MAX_INT (int a, int b);
+INLINE_FUN int GSL_MIN_INT (int a, int b);
+INLINE_FUN double GSL_MAX_DBL (double a, double b);
+INLINE_FUN double GSL_MIN_DBL (double a, double b);
+INLINE_FUN long double GSL_MAX_LDBL (long double a, long double b);
+INLINE_FUN long double GSL_MIN_LDBL (long double a, long double b);
+
+INLINE_FUN int
+GSL_MAX_INT (int a, int b)
+{
+  return GSL_MAX (a, b);
+}
+
+INLINE_FUN int
+GSL_MIN_INT (int a, int b)
+{
+  return GSL_MIN (a, b);
+}
+
+INLINE_FUN double
+GSL_MAX_DBL (double a, double b)
+{
+  return GSL_MAX (a, b);
+}
+
+INLINE_FUN double
+GSL_MIN_DBL (double a, double b)
+{
+  return GSL_MIN (a, b);
+}
+
+INLINE_FUN long double
+GSL_MAX_LDBL (long double a, long double b)
+{
+  return GSL_MAX (a, b);
+}
+
+INLINE_FUN long double
+GSL_MIN_LDBL (long double a, long double b)
+{
+  return GSL_MIN (a, b);
+}
+#else
+#define GSL_MAX_INT(a,b)   GSL_MAX(a,b)
+#define GSL_MIN_INT(a,b)   GSL_MIN(a,b)
+#define GSL_MAX_DBL(a,b)   GSL_MAX(a,b)
+#define GSL_MIN_DBL(a,b)   GSL_MIN(a,b)
+#define GSL_MAX_LDBL(a,b)  GSL_MAX(a,b)
+#define GSL_MIN_LDBL(a,b)  GSL_MIN(a,b)
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_POW_INT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_mode.h b/util/X86LINUX64/include/gsl/gsl_mode.h
new file mode 100644 (file)
index 0000000..c8e5d55
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_mode.h
@@ -0,0 +1,88 @@
+/* gsl_mode.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2004 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  B. Gough and G. Jungman */
+
+#ifndef __GSL_MODE_H__
+#define __GSL_MODE_H__
+#include <gsl/gsl_inline.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Some functions can take a mode argument. This
+ * is a rough method to do things like control
+ * the precision of the algorithm. This mainly
+ * occurs in special functions, but we figured
+ * it was ok to have a general facility.
+ *
+ * The mode type is 32-bit field. Most of
+ * the fields are currently unused. Users
+ * '|' various predefined constants to get
+ * a desired mode.
+ */
+typedef unsigned int gsl_mode_t;
+
+
+/* Here are the predefined constants.
+ * Note that the precision constants
+ * are special because they are used
+ * to index arrays, so do not change
+ * them. The precision information is
+ * in the low order 3 bits of gsl_mode_t
+ * (the third bit is currently unused).
+ */
+
+/* Note that "0" is double precision,
+ * so that you get that by default if
+ * you forget a flag.
+ */
+#define GSL_PREC_DOUBLE  0
+#define GSL_PREC_SINGLE  1
+#define GSL_PREC_APPROX  2
+
+#ifdef HAVE_INLINE
+INLINE_FUN unsigned int GSL_MODE_PREC(gsl_mode_t mt);
+
+INLINE_FUN unsigned int
+GSL_MODE_PREC(gsl_mode_t mt)
+{ return  (mt & (unsigned int)7); }
+#else  /* HAVE_INLINE */
+#define GSL_MODE_PREC(mt) ((mt) & (unsigned int)7)
+#endif /* HAVE_INLINE */
+
+
+/* Here are some predefined generic modes.
+ */
+#define GSL_MODE_DEFAULT  0
+
+
+__END_DECLS
+
+#endif /* __GSL_MODE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_monte.h b/util/X86LINUX64/include/gsl/gsl_monte.h
new file mode 100644 (file)
index 0000000..4d1d88e
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_monte.h
@@ -0,0 +1,55 @@
+/* monte/gsl_monte.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Michael Booth
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Some things common to all the Monte-Carlo implementations */
+/* Author: MJB */
+
+#ifndef __GSL_MONTE_H__
+#define __GSL_MONTE_H__
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/* Hide the function type in a typedef so that we can use it in all our
+   integration functions, and make it easy to change things.
+*/
+
+struct gsl_monte_function_struct {
+  double (*f)(double * x_array, size_t dim, void * params);
+  size_t dim;
+  void * params;
+};
+
+typedef struct gsl_monte_function_struct gsl_monte_function;
+
+#define GSL_MONTE_FN_EVAL(F,x) (*((F)->f))(x,(F)->dim,(F)->params)
+
+
+__END_DECLS
+
+#endif /* __GSL_MONTE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_monte_miser.h b/util/X86LINUX64/include/gsl/gsl_monte_miser.h
new file mode 100644 (file)
index 0000000..5940396
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_monte_miser.h
@@ -0,0 +1,97 @@
+/* monte/gsl_monte_miser.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Michael Booth
+ * Copyright (C) 2009 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author: MJB */
+
+#ifndef __GSL_MONTE_MISER_H__
+#define __GSL_MONTE_MISER_H__
+
+#include <gsl/gsl_rng.h>
+#include <gsl/gsl_monte.h>
+#include <gsl/gsl_monte_plain.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct {
+  size_t min_calls;
+  size_t min_calls_per_bisection;
+  double dither;
+  double estimate_frac;
+  double alpha;
+  size_t dim;
+  int estimate_style;
+  int depth;
+  int verbose;
+  double * x;
+  double * xmid;
+  double * sigma_l;
+  double * sigma_r;
+  double * fmax_l;
+  double * fmax_r;
+  double * fmin_l;
+  double * fmin_r;
+  double * fsum_l;
+  double * fsum_r;
+  double * fsum2_l;
+  double * fsum2_r;
+  size_t * hits_l;
+  size_t * hits_r;
+} gsl_monte_miser_state; 
+
+int gsl_monte_miser_integrate(gsl_monte_function * f, 
+                              const double xl[], const double xh[], 
+                              size_t dim, size_t calls, 
+                              gsl_rng *r, 
+                              gsl_monte_miser_state* state,
+                              double *result, double *abserr);
+
+gsl_monte_miser_state* gsl_monte_miser_alloc(size_t dim);
+
+int gsl_monte_miser_init(gsl_monte_miser_state* state);
+
+void gsl_monte_miser_free(gsl_monte_miser_state* state);
+
+typedef struct {
+  double estimate_frac;
+  size_t min_calls;
+  size_t min_calls_per_bisection;
+  double alpha;
+  double dither;
+} gsl_monte_miser_params;
+
+void gsl_monte_miser_params_get (const gsl_monte_miser_state * state,
+                                gsl_monte_miser_params * params);
+
+void gsl_monte_miser_params_set (gsl_monte_miser_state * state,
+                                const gsl_monte_miser_params * params);
+
+__END_DECLS
+
+#endif /* __GSL_MONTE_MISER_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_monte_plain.h b/util/X86LINUX64/include/gsl/gsl_monte_plain.h
new file mode 100644 (file)
index 0000000..c4745b9
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_monte_plain.h
@@ -0,0 +1,65 @@
+/* monte/gsl_monte_plain.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Michael Booth
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Plain Monte-Carlo. */
+
+/* Author: MJB */
+
+#ifndef __GSL_MONTE_PLAIN_H__
+#define __GSL_MONTE_PLAIN_H__
+
+#include <stdio.h>
+#include <gsl/gsl_monte.h>
+#include <gsl/gsl_rng.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct {
+  size_t dim;
+  double *x;
+} gsl_monte_plain_state;
+
+int
+gsl_monte_plain_integrate (const gsl_monte_function * f,
+                           const double xl[], const double xu[],
+                           const size_t dim,
+                           const size_t calls, 
+                           gsl_rng * r,
+                           gsl_monte_plain_state * state,
+                           double *result, double *abserr);
+
+gsl_monte_plain_state* gsl_monte_plain_alloc(size_t dim);
+
+int gsl_monte_plain_init(gsl_monte_plain_state* state);
+
+void gsl_monte_plain_free (gsl_monte_plain_state* state);
+
+__END_DECLS
+
+#endif /* __GSL_MONTE_PLAIN_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_monte_vegas.h b/util/X86LINUX64/include/gsl/gsl_monte_vegas.h
new file mode 100644 (file)
index 0000000..0942c04
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_monte_vegas.h
@@ -0,0 +1,125 @@
+/* monte/gsl_monte_vegas.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Michael Booth
+ * Copyright (C) 2009 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* header for the gsl "vegas" routines.  Mike Booth, May 1998 */
+
+#ifndef __GSL_MONTE_VEGAS_H__
+#define __GSL_MONTE_VEGAS_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_rng.h>
+#include <gsl/gsl_monte.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+enum {GSL_VEGAS_MODE_IMPORTANCE = 1, 
+      GSL_VEGAS_MODE_IMPORTANCE_ONLY = 0, 
+      GSL_VEGAS_MODE_STRATIFIED = -1};
+
+typedef struct {
+  /* grid */
+  size_t dim;
+  size_t bins_max;
+  unsigned int bins;
+  unsigned int boxes; /* these are both counted along the axes */
+  double * xi;
+  double * xin;
+  double * delx;
+  double * weight;
+  double vol;
+
+  double * x;
+  int * bin;
+  int * box;
+  
+  /* distribution */
+  double * d;
+
+  /* control variables */
+  double alpha;
+  int mode;
+  int verbose;
+  unsigned int iterations;
+  int stage;
+
+  /* scratch variables preserved between calls to vegas1/2/3  */
+  double jac;
+  double wtd_int_sum; 
+  double sum_wgts;
+  double chi_sum;
+  double chisq;
+
+  double result;
+  double sigma;
+
+  unsigned int it_start;
+  unsigned int it_num;
+  unsigned int samples;
+  unsigned int calls_per_box;
+
+  FILE * ostream;
+
+} gsl_monte_vegas_state;
+
+int gsl_monte_vegas_integrate(gsl_monte_function * f, 
+                              double xl[], double xu[], 
+                              size_t dim, size_t calls,
+                              gsl_rng * r,
+                              gsl_monte_vegas_state *state,
+                              double* result, double* abserr);
+
+gsl_monte_vegas_state* gsl_monte_vegas_alloc(size_t dim);
+
+int gsl_monte_vegas_init(gsl_monte_vegas_state* state);
+
+void gsl_monte_vegas_free (gsl_monte_vegas_state* state);
+
+double gsl_monte_vegas_chisq (const gsl_monte_vegas_state* state);
+void gsl_monte_vegas_runval (const gsl_monte_vegas_state* state, double * result, double * sigma);
+
+typedef struct {
+  double alpha;
+  size_t iterations;
+  int stage;
+  int mode;
+  int verbose;
+  FILE * ostream;
+} gsl_monte_vegas_params;
+
+void gsl_monte_vegas_params_get (const gsl_monte_vegas_state * state,
+                                gsl_monte_vegas_params * params);
+
+void gsl_monte_vegas_params_set (gsl_monte_vegas_state * state,
+                                const gsl_monte_vegas_params * params);
+
+__END_DECLS
+
+#endif /* __GSL_MONTE_VEGAS_H__ */
+

diff --git a/util/X86LINUX64/include/gsl/gsl_multifit.h b/util/X86LINUX64/include/gsl/gsl_multifit.h
new file mode 100644 (file)
index 0000000..a32d767
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_multifit.h
@@ -0,0 +1,130 @@
+/* multifit/gsl_multifit.h
+ * 
+ * Copyright (C) 2000, 2007, 2010 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MULTIFIT_H__
+#define __GSL_MULTIFIT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_vector.h>
+#include <gsl/gsl_matrix.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t n; /* number of observations */
+  size_t p; /* number of parameters */
+  gsl_matrix * A;
+  gsl_matrix * Q;
+  gsl_matrix * QSI;
+  gsl_vector * S;
+  gsl_vector * t;
+  gsl_vector * xt;
+  gsl_vector * D;
+} 
+gsl_multifit_linear_workspace;
+
+gsl_multifit_linear_workspace *
+gsl_multifit_linear_alloc (size_t n, size_t p);
+
+void
+gsl_multifit_linear_free (gsl_multifit_linear_workspace * work);
+
+int
+gsl_multifit_linear (const gsl_matrix * X,
+                     const gsl_vector * y,
+                     gsl_vector * c,
+                     gsl_matrix * cov,
+                     double * chisq,
+                     gsl_multifit_linear_workspace * work);
+
+int
+gsl_multifit_linear_svd (const gsl_matrix * X,
+                         const gsl_vector * y,
+                         double tol,
+                         size_t * rank,
+                         gsl_vector * c,
+                         gsl_matrix * cov,
+                         double *chisq, 
+                         gsl_multifit_linear_workspace * work);
+
+int
+gsl_multifit_linear_usvd (const gsl_matrix * X,
+                          const gsl_vector * y,
+                          double tol,
+                          size_t * rank,
+                          gsl_vector * c,
+                          gsl_matrix * cov,
+                          double *chisq, 
+                          gsl_multifit_linear_workspace * work);
+
+int
+gsl_multifit_wlinear (const gsl_matrix * X,
+                      const gsl_vector * w,
+                      const gsl_vector * y,
+                      gsl_vector * c,
+                      gsl_matrix * cov,
+                      double * chisq,
+                      gsl_multifit_linear_workspace * work);
+
+int
+gsl_multifit_wlinear_svd (const gsl_matrix * X,
+                          const gsl_vector * w,
+                          const gsl_vector * y,
+                          double tol,
+                          size_t * rank,
+                          gsl_vector * c,
+                          gsl_matrix * cov,
+                          double *chisq, 
+                          gsl_multifit_linear_workspace * work);
+
+int
+gsl_multifit_wlinear_usvd (const gsl_matrix * X,
+                           const gsl_vector * w,
+                           const gsl_vector * y,
+                           double tol,
+                           size_t * rank,
+                           gsl_vector * c,
+                           gsl_matrix * cov,
+                           double *chisq, 
+                           gsl_multifit_linear_workspace * work);
+
+int
+gsl_multifit_linear_est (const gsl_vector * x,
+                         const gsl_vector * c,
+                         const gsl_matrix * cov, double *y, double *y_err);
+
+int
+gsl_multifit_linear_residuals (const gsl_matrix *X, const gsl_vector *y,
+                               const gsl_vector *c, gsl_vector *r);
+
+__END_DECLS
+
+#endif /* __GSL_MULTIFIT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_multifit_nlin.h b/util/X86LINUX64/include/gsl/gsl_multifit_nlin.h
new file mode 100644 (file)
index 0000000..96bd014
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_multifit_nlin.h
@@ -0,0 +1,172 @@
+/* multifit_nlin/gsl_multifit_nlin.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MULTIFIT_NLIN_H__
+#define __GSL_MULTIFIT_NLIN_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_vector.h>
+#include <gsl/gsl_matrix.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_multifit_gradient (const gsl_matrix * J, const gsl_vector * f,
+                           gsl_vector * g);
+
+int gsl_multifit_covar (const gsl_matrix * J, double epsrel, gsl_matrix * covar);
+
+
+/* Definition of vector-valued functions with parameters based on gsl_vector */
+
+struct gsl_multifit_function_struct
+{
+  int (* f) (const gsl_vector * x, void * params, gsl_vector * f);
+  size_t n;   /* number of functions */
+  size_t p;   /* number of independent variables */
+  void * params;
+};
+
+typedef struct gsl_multifit_function_struct gsl_multifit_function ;
+
+#define GSL_MULTIFIT_FN_EVAL(F,x,y) (*((F)->f))(x,(F)->params,(y))
+
+typedef struct
+  {
+    const char *name;
+    size_t size;
+    int (*alloc) (void *state, size_t n, size_t p);
+    int (*set) (void *state, gsl_multifit_function * function, gsl_vector * x, gsl_vector * f, gsl_vector * dx);
+    int (*iterate) (void *state, gsl_multifit_function * function, gsl_vector * x, gsl_vector * f, gsl_vector * dx);
+    void (*free) (void *state);
+  }
+gsl_multifit_fsolver_type;
+
+typedef struct
+  {
+    const gsl_multifit_fsolver_type * type;
+    gsl_multifit_function * function ;
+    gsl_vector * x ;
+    gsl_vector * f ;
+    gsl_vector * dx ;
+    void *state;
+  }
+gsl_multifit_fsolver;
+
+gsl_multifit_fsolver *
+gsl_multifit_fsolver_alloc (const gsl_multifit_fsolver_type * T, 
+                            size_t n, size_t p);
+
+void gsl_multifit_fsolver_free (gsl_multifit_fsolver * s);
+
+int gsl_multifit_fsolver_set (gsl_multifit_fsolver * s, 
+                                   gsl_multifit_function * f, 
+                                   const gsl_vector * x);
+
+int gsl_multifit_fsolver_iterate (gsl_multifit_fsolver * s);
+
+const char * gsl_multifit_fsolver_name (const gsl_multifit_fsolver * s);
+gsl_vector * gsl_multifit_fsolver_position (const gsl_multifit_fsolver * s);
+
+/* Definition of vector-valued functions and gradient with parameters
+   based on gsl_vector */
+
+struct gsl_multifit_function_fdf_struct
+{
+  int (* f) (const gsl_vector * x, void * params, gsl_vector * f);
+  int (* df) (const gsl_vector * x, void * params, gsl_matrix * df);
+  int (* fdf) (const gsl_vector * x, void * params, gsl_vector * f, gsl_matrix *df);
+  size_t n;   /* number of functions */
+  size_t p;   /* number of independent variables */
+  void * params;
+};
+
+typedef struct gsl_multifit_function_fdf_struct gsl_multifit_function_fdf ;
+
+#define GSL_MULTIFIT_FN_EVAL_F(F,x,y) ((*((F)->f))(x,(F)->params,(y)))
+#define GSL_MULTIFIT_FN_EVAL_DF(F,x,dy) ((*((F)->df))(x,(F)->params,(dy)))
+#define GSL_MULTIFIT_FN_EVAL_F_DF(F,x,y,dy) ((*((F)->fdf))(x,(F)->params,(y),(dy)))
+
+typedef struct
+  {
+    const char *name;
+    size_t size;
+    int (*alloc) (void *state, size_t n, size_t p);
+    int (*set) (void *state, gsl_multifit_function_fdf * fdf, gsl_vector * x, gsl_vector * f, gsl_matrix * J, gsl_vector * dx);
+    int (*iterate) (void *state, gsl_multifit_function_fdf * fdf, gsl_vector * x, gsl_vector * f, gsl_matrix * J, gsl_vector * dx);
+    void (*free) (void *state);
+  }
+gsl_multifit_fdfsolver_type;
+
+typedef struct
+  {
+    const gsl_multifit_fdfsolver_type * type;
+    gsl_multifit_function_fdf * fdf ;
+    gsl_vector * x;
+    gsl_vector * f;
+    gsl_matrix * J;
+    gsl_vector * dx;
+    void *state;
+  }
+gsl_multifit_fdfsolver;
+
+
+gsl_multifit_fdfsolver *
+gsl_multifit_fdfsolver_alloc (const gsl_multifit_fdfsolver_type * T, 
+                              size_t n, size_t p);
+
+int
+gsl_multifit_fdfsolver_set (gsl_multifit_fdfsolver * s, 
+                                 gsl_multifit_function_fdf * fdf,
+                                 const gsl_vector * x);
+
+int
+gsl_multifit_fdfsolver_iterate (gsl_multifit_fdfsolver * s);
+
+void
+gsl_multifit_fdfsolver_free (gsl_multifit_fdfsolver * s);
+
+const char * gsl_multifit_fdfsolver_name (const gsl_multifit_fdfsolver * s);
+gsl_vector * gsl_multifit_fdfsolver_position (const gsl_multifit_fdfsolver * s);
+
+int gsl_multifit_test_delta (const gsl_vector * dx, const gsl_vector * x, 
+                             double epsabs, double epsrel);
+
+int gsl_multifit_test_gradient (const gsl_vector * g, double epsabs);
+
+/* extern const gsl_multifit_fsolver_type * gsl_multifit_fsolver_gradient; */
+
+GSL_VAR const gsl_multifit_fdfsolver_type * gsl_multifit_fdfsolver_lmder;
+GSL_VAR const gsl_multifit_fdfsolver_type * gsl_multifit_fdfsolver_lmsder;
+
+
+__END_DECLS
+
+#endif /* __GSL_MULTIFIT_NLIN_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_multimin.h b/util/X86LINUX64/include/gsl/gsl_multimin.h
new file mode 100644 (file)
index 0000000..2870227
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_multimin.h
@@ -0,0 +1,226 @@
+/* multimin/gsl_multimin.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Fabrice Rossi
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Modified by Tuomo Keskitalo to include fminimizer and 
+   Nelder Mead related lines */
+
+#ifndef __GSL_MULTIMIN_H__
+#define __GSL_MULTIMIN_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_vector.h>
+#include <gsl/gsl_matrix.h>
+#include <gsl/gsl_min.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/* Definition of an arbitrary real-valued function with gsl_vector input and */
+/* parameters */
+struct gsl_multimin_function_struct 
+{
+  double (* f) (const gsl_vector * x, void * params);
+  size_t n;
+  void * params;
+};
+
+typedef struct gsl_multimin_function_struct gsl_multimin_function;
+
+#define GSL_MULTIMIN_FN_EVAL(F,x) (*((F)->f))(x,(F)->params)
+
+/* Definition of an arbitrary differentiable real-valued function */
+/* with gsl_vector input and parameters */
+struct gsl_multimin_function_fdf_struct 
+{
+  double (* f) (const gsl_vector  * x, void * params);
+  void (* df) (const gsl_vector * x, void * params,gsl_vector * df);
+  void (* fdf) (const gsl_vector * x, void * params,double *f,gsl_vector * df);
+  size_t n;
+  void * params;
+};
+
+typedef struct gsl_multimin_function_fdf_struct gsl_multimin_function_fdf;
+
+#define GSL_MULTIMIN_FN_EVAL_F(F,x) (*((F)->f))(x,(F)->params)
+#define GSL_MULTIMIN_FN_EVAL_DF(F,x,g) (*((F)->df))(x,(F)->params,(g))
+#define GSL_MULTIMIN_FN_EVAL_F_DF(F,x,y,g) (*((F)->fdf))(x,(F)->params,(y),(g))
+
+int gsl_multimin_diff (const gsl_multimin_function * f,
+                       const gsl_vector * x, gsl_vector * g);
+
+/* minimization of non-differentiable functions */
+
+typedef struct 
+{
+  const char *name;
+  size_t size;
+  int (*alloc) (void *state, size_t n);
+  int (*set) (void *state, gsl_multimin_function * f,
+              const gsl_vector * x, 
+              double * size,
+              const gsl_vector * step_size);
+  int (*iterate) (void *state, gsl_multimin_function * f, 
+                  gsl_vector * x, 
+                  double * size,
+                  double * fval);
+  void (*free) (void *state);
+}
+gsl_multimin_fminimizer_type;
+
+typedef struct 
+{
+  /* multi dimensional part */
+  const gsl_multimin_fminimizer_type *type;
+  gsl_multimin_function *f;
+
+  double fval;
+  gsl_vector * x;
+  
+  double size;
+
+  void *state;
+}
+gsl_multimin_fminimizer;
+
+gsl_multimin_fminimizer *
+gsl_multimin_fminimizer_alloc(const gsl_multimin_fminimizer_type *T,
+                              size_t n);
+
+int 
+gsl_multimin_fminimizer_set (gsl_multimin_fminimizer * s,
+                             gsl_multimin_function * f,
+                             const gsl_vector * x,
+                             const gsl_vector * step_size);
+
+void
+gsl_multimin_fminimizer_free(gsl_multimin_fminimizer *s);
+
+const char * 
+gsl_multimin_fminimizer_name (const gsl_multimin_fminimizer * s);
+
+int
+gsl_multimin_fminimizer_iterate(gsl_multimin_fminimizer *s);
+
+gsl_vector * 
+gsl_multimin_fminimizer_x (const gsl_multimin_fminimizer * s);
+
+double 
+gsl_multimin_fminimizer_minimum (const gsl_multimin_fminimizer * s);
+
+double
+gsl_multimin_fminimizer_size (const gsl_multimin_fminimizer * s);
+
+/* Convergence test functions */
+
+int
+gsl_multimin_test_gradient(const gsl_vector * g, double epsabs);
+
+int
+gsl_multimin_test_size(const double size, double epsabs);
+
+/* minimisation of differentiable functions */
+
+typedef struct 
+{
+  const char *name;
+  size_t size;
+  int (*alloc) (void *state, size_t n);
+  int (*set) (void *state, gsl_multimin_function_fdf * fdf,
+              const gsl_vector * x, double * f, 
+              gsl_vector * gradient, double step_size, double tol);
+  int (*iterate) (void *state,gsl_multimin_function_fdf * fdf, 
+                  gsl_vector * x, double * f, 
+                  gsl_vector * gradient, gsl_vector * dx);
+  int (*restart) (void *state);
+  void (*free) (void *state);
+}
+gsl_multimin_fdfminimizer_type;
+
+typedef struct 
+{
+  /* multi dimensional part */
+  const gsl_multimin_fdfminimizer_type *type;
+  gsl_multimin_function_fdf *fdf;
+
+  double f;
+  gsl_vector * x;
+  gsl_vector * gradient;
+  gsl_vector * dx;
+
+  void *state;
+}
+gsl_multimin_fdfminimizer;
+
+gsl_multimin_fdfminimizer *
+gsl_multimin_fdfminimizer_alloc(const gsl_multimin_fdfminimizer_type *T,
+                                size_t n);
+
+int 
+gsl_multimin_fdfminimizer_set (gsl_multimin_fdfminimizer * s,
+                               gsl_multimin_function_fdf *fdf,
+                               const gsl_vector * x,
+                               double step_size, double tol);
+
+void
+gsl_multimin_fdfminimizer_free(gsl_multimin_fdfminimizer *s);
+
+const char * 
+gsl_multimin_fdfminimizer_name (const gsl_multimin_fdfminimizer * s);
+
+int
+gsl_multimin_fdfminimizer_iterate(gsl_multimin_fdfminimizer *s);
+
+int
+gsl_multimin_fdfminimizer_restart(gsl_multimin_fdfminimizer *s);
+
+gsl_vector * 
+gsl_multimin_fdfminimizer_x (const gsl_multimin_fdfminimizer * s);
+
+gsl_vector * 
+gsl_multimin_fdfminimizer_dx (const gsl_multimin_fdfminimizer * s);
+
+gsl_vector * 
+gsl_multimin_fdfminimizer_gradient (const gsl_multimin_fdfminimizer * s);
+
+double 
+gsl_multimin_fdfminimizer_minimum (const gsl_multimin_fdfminimizer * s);
+
+GSL_VAR const gsl_multimin_fdfminimizer_type *gsl_multimin_fdfminimizer_steepest_descent;
+GSL_VAR const gsl_multimin_fdfminimizer_type *gsl_multimin_fdfminimizer_conjugate_pr;
+GSL_VAR const gsl_multimin_fdfminimizer_type *gsl_multimin_fdfminimizer_conjugate_fr;
+GSL_VAR const gsl_multimin_fdfminimizer_type *gsl_multimin_fdfminimizer_vector_bfgs;
+GSL_VAR const gsl_multimin_fdfminimizer_type *gsl_multimin_fdfminimizer_vector_bfgs2;
+GSL_VAR const gsl_multimin_fminimizer_type *gsl_multimin_fminimizer_nmsimplex;
+GSL_VAR const gsl_multimin_fminimizer_type *gsl_multimin_fminimizer_nmsimplex2;
+GSL_VAR const gsl_multimin_fminimizer_type *gsl_multimin_fminimizer_nmsimplex2rand;
+
+__END_DECLS
+
+#endif /* __GSL_MULTIMIN_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_multiroots.h b/util/X86LINUX64/include/gsl/gsl_multiroots.h
new file mode 100644 (file)
index 0000000..7f66154
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_multiroots.h
@@ -0,0 +1,177 @@
+/* multiroots/gsl_multiroots.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MULTIROOTS_H__
+#define __GSL_MULTIROOTS_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_vector.h>
+#include <gsl/gsl_matrix.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/* Definition of vector-valued functions with parameters based on gsl_vector */
+
+struct gsl_multiroot_function_struct
+{
+  int (* f) (const gsl_vector * x, void * params, gsl_vector * f);
+  size_t n;
+  void * params;
+};
+
+typedef struct gsl_multiroot_function_struct gsl_multiroot_function ;
+
+#define GSL_MULTIROOT_FN_EVAL(F,x,y) (*((F)->f))(x,(F)->params,(y))
+
+int gsl_multiroot_fdjacobian (gsl_multiroot_function * F,
+                              const gsl_vector * x, const gsl_vector * f,
+                              double epsrel, gsl_matrix * jacobian);
+
+
+typedef struct
+  {
+    const char *name;
+    size_t size;
+    int (*alloc) (void *state, size_t n);
+    int (*set) (void *state, gsl_multiroot_function * function, gsl_vector * x, gsl_vector * f, gsl_vector * dx);
+    int (*iterate) (void *state, gsl_multiroot_function * function, gsl_vector * x, gsl_vector * f, gsl_vector * dx);
+    void (*free) (void *state);
+  }
+gsl_multiroot_fsolver_type;
+
+typedef struct
+  {
+    const gsl_multiroot_fsolver_type * type;
+    gsl_multiroot_function * function ;
+    gsl_vector * x ;
+    gsl_vector * f ;
+    gsl_vector * dx ;
+    void *state;
+  }
+gsl_multiroot_fsolver;
+
+gsl_multiroot_fsolver * 
+gsl_multiroot_fsolver_alloc (const gsl_multiroot_fsolver_type * T, 
+                                     size_t n); 
+
+void gsl_multiroot_fsolver_free (gsl_multiroot_fsolver * s);
+
+int gsl_multiroot_fsolver_set (gsl_multiroot_fsolver * s, 
+                               gsl_multiroot_function * f, 
+                               const gsl_vector * x);
+
+int gsl_multiroot_fsolver_iterate (gsl_multiroot_fsolver * s);
+
+const char * gsl_multiroot_fsolver_name (const gsl_multiroot_fsolver * s);
+gsl_vector * gsl_multiroot_fsolver_root (const gsl_multiroot_fsolver * s);
+gsl_vector * gsl_multiroot_fsolver_dx (const gsl_multiroot_fsolver * s);
+gsl_vector * gsl_multiroot_fsolver_f (const gsl_multiroot_fsolver * s);
+
+/* Definition of vector-valued functions and gradient with parameters
+   based on gsl_vector */
+
+struct gsl_multiroot_function_fdf_struct
+{
+  int (* f) (const gsl_vector * x, void * params, gsl_vector * f);
+  int (* df) (const gsl_vector * x, void * params, gsl_matrix * df);
+  int (* fdf) (const gsl_vector * x, void * params, gsl_vector * f, gsl_matrix *df);
+  size_t n;
+  void * params;
+};
+
+typedef struct gsl_multiroot_function_fdf_struct gsl_multiroot_function_fdf ;
+
+#define GSL_MULTIROOT_FN_EVAL_F(F,x,y) ((*((F)->f))(x,(F)->params,(y)))
+#define GSL_MULTIROOT_FN_EVAL_DF(F,x,dy) ((*((F)->df))(x,(F)->params,(dy)))
+#define GSL_MULTIROOT_FN_EVAL_F_DF(F,x,y,dy) ((*((F)->fdf))(x,(F)->params,(y),(dy)))
+
+typedef struct
+  {
+    const char *name;
+    size_t size;
+    int (*alloc) (void *state, size_t n);
+    int (*set) (void *state, gsl_multiroot_function_fdf * fdf, gsl_vector * x, gsl_vector * f, gsl_matrix * J, gsl_vector * dx);
+    int (*iterate) (void *state, gsl_multiroot_function_fdf * fdf, gsl_vector * x, gsl_vector * f, gsl_matrix * J, gsl_vector * dx);
+    void (*free) (void *state);
+  }
+gsl_multiroot_fdfsolver_type;
+
+typedef struct
+  {
+    const gsl_multiroot_fdfsolver_type * type;
+    gsl_multiroot_function_fdf * fdf ;
+    gsl_vector * x;
+    gsl_vector * f;
+    gsl_matrix * J;
+    gsl_vector * dx;
+    void *state;
+  }
+gsl_multiroot_fdfsolver;
+
+gsl_multiroot_fdfsolver *
+gsl_multiroot_fdfsolver_alloc (const gsl_multiroot_fdfsolver_type * T,
+                                      size_t n);
+
+int
+gsl_multiroot_fdfsolver_set (gsl_multiroot_fdfsolver * s, 
+                             gsl_multiroot_function_fdf * fdf,
+                             const gsl_vector * x);
+
+int
+gsl_multiroot_fdfsolver_iterate (gsl_multiroot_fdfsolver * s);
+
+void
+gsl_multiroot_fdfsolver_free (gsl_multiroot_fdfsolver * s);
+
+const char * gsl_multiroot_fdfsolver_name (const gsl_multiroot_fdfsolver * s);
+gsl_vector * gsl_multiroot_fdfsolver_root (const gsl_multiroot_fdfsolver * s);
+gsl_vector * gsl_multiroot_fdfsolver_dx (const gsl_multiroot_fdfsolver * s);
+gsl_vector * gsl_multiroot_fdfsolver_f (const gsl_multiroot_fdfsolver * s);
+
+int gsl_multiroot_test_delta (const gsl_vector * dx, const gsl_vector * x, 
+                              double epsabs, double epsrel);
+
+int gsl_multiroot_test_residual (const gsl_vector * f, double epsabs);
+
+GSL_VAR const gsl_multiroot_fsolver_type * gsl_multiroot_fsolver_dnewton;
+GSL_VAR const gsl_multiroot_fsolver_type * gsl_multiroot_fsolver_broyden;
+GSL_VAR const gsl_multiroot_fsolver_type * gsl_multiroot_fsolver_hybrid;
+GSL_VAR const gsl_multiroot_fsolver_type * gsl_multiroot_fsolver_hybrids;
+
+GSL_VAR const gsl_multiroot_fdfsolver_type * gsl_multiroot_fdfsolver_newton;
+GSL_VAR const gsl_multiroot_fdfsolver_type * gsl_multiroot_fdfsolver_gnewton;
+GSL_VAR const gsl_multiroot_fdfsolver_type * gsl_multiroot_fdfsolver_hybridj;
+GSL_VAR const gsl_multiroot_fdfsolver_type * gsl_multiroot_fdfsolver_hybridsj;
+
+
+__END_DECLS
+
+#endif /* __GSL_MULTIROOTS_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_multiset.h b/util/X86LINUX64/include/gsl/gsl_multiset.h
new file mode 100644 (file)
index 0000000..1ba5d6c
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_multiset.h
@@ -0,0 +1,93 @@
+/* multiset/gsl_multiset.h
+ * based on combination/gsl_combination.h by Szymon Jaroszewicz
+ * based on permutation/gsl_permutation.h by Brian Gough
+ *
+ * Copyright (C) 2009 Rhys Ulerich
+ *
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_MULTISET_H__
+#define __GSL_MULTISET_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_multiset_struct
+{
+  size_t n;
+  size_t k;
+  size_t *data;
+};
+
+typedef struct gsl_multiset_struct gsl_multiset;
+
+gsl_multiset *gsl_multiset_alloc (const size_t n, const size_t k);
+gsl_multiset *gsl_multiset_calloc (const size_t n, const size_t k);
+void gsl_multiset_init_first (gsl_multiset * c);
+void gsl_multiset_init_last (gsl_multiset * c);
+void gsl_multiset_free (gsl_multiset * c);
+int gsl_multiset_memcpy (gsl_multiset * dest, const gsl_multiset * src);
+
+int gsl_multiset_fread (FILE * stream, gsl_multiset * c);
+int gsl_multiset_fwrite (FILE * stream, const gsl_multiset * c);
+int gsl_multiset_fscanf (FILE * stream, gsl_multiset * c);
+int gsl_multiset_fprintf (FILE * stream, const gsl_multiset * c, const char *format);
+
+size_t gsl_multiset_n (const gsl_multiset * c);
+size_t gsl_multiset_k (const gsl_multiset * c);
+size_t * gsl_multiset_data (const gsl_multiset * c);
+
+int gsl_multiset_valid (gsl_multiset * c);
+int gsl_multiset_next (gsl_multiset * c);
+int gsl_multiset_prev (gsl_multiset * c);
+
+INLINE_DECL size_t gsl_multiset_get (const gsl_multiset * c, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+size_t
+gsl_multiset_get (const gsl_multiset * c, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= c->k)) /* size_t is unsigned, can't be negative */
+    {
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, 0);
+    }
+#endif
+  return c->data[i];
+}
+
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_MULTISET_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_nan.h b/util/X86LINUX64/include/gsl/gsl_nan.h
new file mode 100644 (file)
index 0000000..5cb52ef
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_nan.h
@@ -0,0 +1,45 @@
+/* gsl_nan.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_NAN_H__
+#define __GSL_NAN_H__
+
+#ifdef INFINITY
+# define GSL_POSINF INFINITY
+# define GSL_NEGINF (-INFINITY)
+#elif defined(HUGE_VAL)
+# define GSL_POSINF HUGE_VAL
+# define GSL_NEGINF (-HUGE_VAL)
+#else
+# define GSL_POSINF (gsl_posinf())
+# define GSL_NEGINF (gsl_neginf())
+#endif
+
+#ifdef NAN
+# define GSL_NAN NAN
+#elif defined(INFINITY)
+# define GSL_NAN (INFINITY/INFINITY)
+#else
+# define GSL_NAN (gsl_nan())
+#endif
+
+#define GSL_POSZERO (+0.0)
+#define GSL_NEGZERO (-0.0)
+
+#endif /* __GSL_NAN_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_ntuple.h b/util/X86LINUX64/include/gsl/gsl_ntuple.h
new file mode 100644 (file)
index 0000000..90d8a26
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_ntuple.h
@@ -0,0 +1,82 @@
+/* histogram/ntuple.h
+ * 
+ * Copyright (C) 2000 Simone Piccardi
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ *
+ */
+
+/* Jan/2001 Modified by Brian Gough. Minor changes for GSL */
+
+#ifndef __GSL_NTUPLE_H__
+#define __GSL_NTUPLE_H__
+
+#include <stdlib.h>
+#include <stdio.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_histogram.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct {
+    FILE * file;
+    void * ntuple_data;
+    size_t size;
+} gsl_ntuple;
+
+typedef struct {
+  int (* function) (void * ntuple_data, void * params);
+  void * params;
+} gsl_ntuple_select_fn;
+
+typedef struct {
+  double (* function) (void * ntuple_data, void * params);
+  void * params;
+} gsl_ntuple_value_fn;
+
+gsl_ntuple * 
+gsl_ntuple_open (char * filename, void * ntuple_data, size_t size);
+
+gsl_ntuple * 
+gsl_ntuple_create (char * filename, void * ntuple_data, size_t size);
+
+int gsl_ntuple_write (gsl_ntuple * ntuple);
+int gsl_ntuple_read (gsl_ntuple * ntuple);
+
+int gsl_ntuple_bookdata (gsl_ntuple * ntuple);  /* synonym for write */
+
+int gsl_ntuple_project (gsl_histogram * h, gsl_ntuple * ntuple, 
+                        gsl_ntuple_value_fn *value_func,
+                        gsl_ntuple_select_fn *select_func);
+
+int gsl_ntuple_close (gsl_ntuple * ntuple);
+
+__END_DECLS
+
+#endif /* __GSL_NTUPLE_H__ */
+
+
+
+

diff --git a/util/X86LINUX64/include/gsl/gsl_odeiv.h b/util/X86LINUX64/include/gsl/gsl_odeiv.h
new file mode 100644 (file)
index 0000000..d70f150
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_odeiv.h
@@ -0,0 +1,230 @@
+/* ode-initval/gsl_odeiv.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman
+ */
+#ifndef __GSL_ODEIV_H__
+#define __GSL_ODEIV_H__
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Description of a system of ODEs.
+ *
+ * y' = f(t,y) = dydt(t, y)
+ *
+ * The system is specified by giving the right-hand-side
+ * of the equation and possibly a jacobian function.
+ *
+ * Some methods require the jacobian function, which calculates
+ * the matrix dfdy and the vector dfdt. The matrix dfdy conforms
+ * to the GSL standard, being a continuous range of floating point
+ * values, in row-order.
+ *
+ * As with GSL function objects, user-supplied parameter
+ * data is also present. 
+ */
+
+typedef struct  
+{
+  int (* function) (double t, const double y[], double dydt[], void * params);
+  int (* jacobian) (double t, const double y[], double * dfdy, double dfdt[], void * params);
+  size_t dimension;
+  void * params;
+}
+gsl_odeiv_system;
+
+#define GSL_ODEIV_FN_EVAL(S,t,y,f)  (*((S)->function))(t,y,f,(S)->params)
+#define GSL_ODEIV_JA_EVAL(S,t,y,dfdy,dfdt)  (*((S)->jacobian))(t,y,dfdy,dfdt,(S)->params)
+
+
+/* General stepper object.
+ *
+ * Opaque object for stepping an ODE system from t to t+h.
+ * In general the object has some state which facilitates
+ * iterating the stepping operation.
+ */
+
+typedef struct 
+{
+  const char * name;
+  int can_use_dydt_in;
+  int gives_exact_dydt_out;
+  void * (*alloc) (size_t dim);
+  int  (*apply)  (void * state, size_t dim, double t, double h, double y[], double yerr[], const double dydt_in[], double dydt_out[], const gsl_odeiv_system * dydt);
+  int  (*reset) (void * state, size_t dim);
+  unsigned int  (*order) (void * state);
+  void (*free)  (void * state);
+}
+gsl_odeiv_step_type;
+
+typedef struct {
+  const gsl_odeiv_step_type * type;
+  size_t dimension;
+  void * state;
+}
+gsl_odeiv_step;
+
+
+/* Available stepper types.
+ *
+ * rk2    : embedded 2nd(3rd) Runge-Kutta
+ * rk4    : 4th order (classical) Runge-Kutta
+ * rkck   : embedded 4th(5th) Runge-Kutta, Cash-Karp
+ * rk8pd  : embedded 8th(9th) Runge-Kutta, Prince-Dormand
+ * rk2imp : implicit 2nd order Runge-Kutta at Gaussian points
+ * rk4imp : implicit 4th order Runge-Kutta at Gaussian points
+ * gear1  : M=1 implicit Gear method
+ * gear2  : M=2 implicit Gear method
+ */
+
+GSL_VAR const gsl_odeiv_step_type *gsl_odeiv_step_rk2;
+GSL_VAR const gsl_odeiv_step_type *gsl_odeiv_step_rk4;
+GSL_VAR const gsl_odeiv_step_type *gsl_odeiv_step_rkf45;
+GSL_VAR const gsl_odeiv_step_type *gsl_odeiv_step_rkck;
+GSL_VAR const gsl_odeiv_step_type *gsl_odeiv_step_rk8pd;
+GSL_VAR const gsl_odeiv_step_type *gsl_odeiv_step_rk2imp;
+GSL_VAR const gsl_odeiv_step_type *gsl_odeiv_step_rk2simp;
+GSL_VAR const gsl_odeiv_step_type *gsl_odeiv_step_rk4imp;
+GSL_VAR const gsl_odeiv_step_type *gsl_odeiv_step_bsimp;
+GSL_VAR const gsl_odeiv_step_type *gsl_odeiv_step_gear1;
+GSL_VAR const gsl_odeiv_step_type *gsl_odeiv_step_gear2;
+
+
+/* Constructor for specialized stepper objects.
+ */
+gsl_odeiv_step * gsl_odeiv_step_alloc(const gsl_odeiv_step_type * T, size_t dim);
+int  gsl_odeiv_step_reset(gsl_odeiv_step * s);
+void gsl_odeiv_step_free(gsl_odeiv_step * s);
+
+/* General stepper object methods.
+ */
+const char * gsl_odeiv_step_name(const gsl_odeiv_step * s);
+unsigned int gsl_odeiv_step_order(const gsl_odeiv_step * s);
+
+int  gsl_odeiv_step_apply(gsl_odeiv_step * s, double t, double h, double y[], double yerr[], const double dydt_in[], double dydt_out[], const gsl_odeiv_system * dydt);
+
+/* General step size control object.
+ *
+ * The hadjust() method controls the adjustment of
+ * step size given the result of a step and the error.
+ * Valid hadjust() methods must return one of the codes below.
+ *
+ * The general data can be used by specializations
+ * to store state and control their heuristics.
+ */
+
+typedef struct 
+{
+  const char * name;
+  void * (*alloc) (void);
+  int  (*init) (void * state, double eps_abs, double eps_rel, double a_y, double a_dydt);
+  int  (*hadjust) (void * state, size_t dim, unsigned int ord, const double y[], const double yerr[], const double yp[], double * h);
+  void (*free) (void * state);
+}
+gsl_odeiv_control_type;
+
+typedef struct 
+{
+  const gsl_odeiv_control_type * type;
+  void * state;
+}
+gsl_odeiv_control;
+
+/* Possible return values for an hadjust() evolution method.
+ */
+#define GSL_ODEIV_HADJ_INC   1  /* step was increased */
+#define GSL_ODEIV_HADJ_NIL   0  /* step unchanged     */
+#define GSL_ODEIV_HADJ_DEC (-1) /* step decreased     */
+
+gsl_odeiv_control * gsl_odeiv_control_alloc(const gsl_odeiv_control_type * T);
+int gsl_odeiv_control_init(gsl_odeiv_control * c, double eps_abs, double eps_rel, double a_y, double a_dydt);
+void gsl_odeiv_control_free(gsl_odeiv_control * c);
+int gsl_odeiv_control_hadjust (gsl_odeiv_control * c, gsl_odeiv_step * s, const double y[], const double yerr[], const double dydt[], double * h);
+const char * gsl_odeiv_control_name(const gsl_odeiv_control * c);
+
+/* Available control object constructors.
+ *
+ * The standard control object is a four parameter heuristic
+ * defined as follows:
+ *    D0 = eps_abs + eps_rel * (a_y |y| + a_dydt h |y'|)
+ *    D1 = |yerr|
+ *    q  = consistency order of method (q=4 for 4(5) embedded RK)
+ *    S  = safety factor (0.9 say)
+ *
+ *                      /  (D0/D1)^(1/(q+1))  D0 >= D1
+ *    h_NEW = S h_OLD * |
+ *                      \  (D0/D1)^(1/q)      D0 < D1
+ *
+ * This encompasses all the standard error scaling methods.
+ *
+ * The y method is the standard method with a_y=1, a_dydt=0.
+ * The yp method is the standard method with a_y=0, a_dydt=1.
+ */
+
+gsl_odeiv_control * gsl_odeiv_control_standard_new(double eps_abs, double eps_rel, double a_y, double a_dydt);
+gsl_odeiv_control * gsl_odeiv_control_y_new(double eps_abs, double eps_rel);
+gsl_odeiv_control * gsl_odeiv_control_yp_new(double eps_abs, double eps_rel);
+
+/* This controller computes errors using different absolute errors for
+ * each component
+ *
+ *    D0 = eps_abs * scale_abs[i] + eps_rel * (a_y |y| + a_dydt h |y'|)
+ */
+gsl_odeiv_control * gsl_odeiv_control_scaled_new(double eps_abs, double eps_rel, double a_y, double a_dydt, const double scale_abs[], size_t dim);
+
+/* General evolution object.
+ */
+typedef struct {
+  size_t dimension;
+  double * y0;
+  double * yerr;
+  double * dydt_in;
+  double * dydt_out;
+  double last_step;
+  unsigned long int count;
+  unsigned long int failed_steps;
+}
+gsl_odeiv_evolve;
+
+/* Evolution object methods.
+ */
+gsl_odeiv_evolve * gsl_odeiv_evolve_alloc(size_t dim);
+int gsl_odeiv_evolve_apply(gsl_odeiv_evolve * e, gsl_odeiv_control * con, gsl_odeiv_step * step, const gsl_odeiv_system * dydt, double * t, double t1, double * h, double y[]);
+int gsl_odeiv_evolve_reset(gsl_odeiv_evolve * e);
+void gsl_odeiv_evolve_free(gsl_odeiv_evolve * e);
+
+
+__END_DECLS
+
+#endif /* __GSL_ODEIV_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_odeiv2.h b/util/X86LINUX64/include/gsl/gsl_odeiv2.h
new file mode 100644 (file)
index 0000000..49004df
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_odeiv2.h
@@ -0,0 +1,332 @@
+/* ode-initval/odeiv2.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+/* Modified by Tuomo Keskitalo */
+
+#ifndef __GSL_ODEIV2_H__
+#define __GSL_ODEIV2_H__
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS          /* empty */
+# define __END_DECLS            /* empty */
+#endif
+
+__BEGIN_DECLS
+/* Description of a system of ODEs.
+ *
+ * y' = f(t,y) = dydt(t, y)
+ *
+ * The system is specified by giving the right-hand-side
+ * of the equation and possibly a jacobian function.
+ *
+ * Some methods require the jacobian function, which calculates
+ * the matrix dfdy and the vector dfdt. The matrix dfdy conforms
+ * to the GSL standard, being a continuous range of floating point
+ * values, in row-order.
+ *
+ * As with GSL function objects, user-supplied parameter
+ * data is also present. 
+ */
+  typedef struct
+{
+  int (*function) (double t, const double y[], double dydt[], void *params);
+  int (*jacobian) (double t, const double y[], double *dfdy, double dfdt[],
+                   void *params);
+  size_t dimension;
+  void *params;
+}
+gsl_odeiv2_system;
+
+/* Function evaluation macros */
+
+#define GSL_ODEIV_FN_EVAL(S,t,y,f)  (*((S)->function))(t,y,f,(S)->params)
+#define GSL_ODEIV_JA_EVAL(S,t,y,dfdy,dfdt)  (*((S)->jacobian))(t,y,dfdy,dfdt,(S)->params)
+
+/* Type definitions */
+
+typedef struct gsl_odeiv2_step_struct gsl_odeiv2_step;
+typedef struct gsl_odeiv2_control_struct gsl_odeiv2_control;
+typedef struct gsl_odeiv2_evolve_struct gsl_odeiv2_evolve;
+typedef struct gsl_odeiv2_driver_struct gsl_odeiv2_driver;
+
+/* Stepper object
+ *
+ * Opaque object for stepping an ODE system from t to t+h.
+ * In general the object has some state which facilitates
+ * iterating the stepping operation.
+ */
+
+typedef struct
+{
+  const char *name;
+  int can_use_dydt_in;
+  int gives_exact_dydt_out;
+  void *(*alloc) (size_t dim);
+  int (*apply) (void *state, size_t dim, double t, double h, double y[],
+                double yerr[], const double dydt_in[], double dydt_out[],
+                const gsl_odeiv2_system * dydt);
+  int (*set_driver) (void *state, const gsl_odeiv2_driver * d);
+  int (*reset) (void *state, size_t dim);
+  unsigned int (*order) (void *state);
+  void (*free) (void *state);
+}
+gsl_odeiv2_step_type;
+
+struct gsl_odeiv2_step_struct
+{
+  const gsl_odeiv2_step_type *type;
+  size_t dimension;
+  void *state;
+};
+
+/* Available stepper types */
+
+GSL_VAR const gsl_odeiv2_step_type *gsl_odeiv2_step_rk2;
+GSL_VAR const gsl_odeiv2_step_type *gsl_odeiv2_step_rk4;
+GSL_VAR const gsl_odeiv2_step_type *gsl_odeiv2_step_rkf45;
+GSL_VAR const gsl_odeiv2_step_type *gsl_odeiv2_step_rkck;
+GSL_VAR const gsl_odeiv2_step_type *gsl_odeiv2_step_rk8pd;
+GSL_VAR const gsl_odeiv2_step_type *gsl_odeiv2_step_rk2imp;
+GSL_VAR const gsl_odeiv2_step_type *gsl_odeiv2_step_rk4imp;
+GSL_VAR const gsl_odeiv2_step_type *gsl_odeiv2_step_bsimp;
+GSL_VAR const gsl_odeiv2_step_type *gsl_odeiv2_step_rk1imp;
+GSL_VAR const gsl_odeiv2_step_type *gsl_odeiv2_step_msadams;
+GSL_VAR const gsl_odeiv2_step_type *gsl_odeiv2_step_msbdf;
+
+/* Stepper object methods */
+
+gsl_odeiv2_step *gsl_odeiv2_step_alloc (const gsl_odeiv2_step_type * T,
+                                        size_t dim);
+int gsl_odeiv2_step_reset (gsl_odeiv2_step * s);
+void gsl_odeiv2_step_free (gsl_odeiv2_step * s);
+const char *gsl_odeiv2_step_name (const gsl_odeiv2_step * s);
+unsigned int gsl_odeiv2_step_order (const gsl_odeiv2_step * s);
+int gsl_odeiv2_step_apply (gsl_odeiv2_step * s, double t, double h,
+                           double y[], double yerr[], const double dydt_in[],
+                           double dydt_out[], const gsl_odeiv2_system * dydt);
+int gsl_odeiv2_step_set_driver (gsl_odeiv2_step * s,
+                                const gsl_odeiv2_driver * d);
+
+/* Step size control object. */
+
+typedef struct
+{
+  const char *name;
+  void *(*alloc) (void);
+  int (*init) (void *state, double eps_abs, double eps_rel, double a_y,
+               double a_dydt);
+  int (*hadjust) (void *state, size_t dim, unsigned int ord, const double y[],
+                  const double yerr[], const double yp[], double *h);
+  int (*errlevel) (void *state, const double y, const double dydt,
+                   const double h, const size_t ind, double *errlev);
+  int (*set_driver) (void *state, const gsl_odeiv2_driver * d);
+  void (*free) (void *state);
+}
+gsl_odeiv2_control_type;
+
+struct gsl_odeiv2_control_struct
+{
+  const gsl_odeiv2_control_type *type;
+  void *state;
+};
+
+/* Possible return values for an hadjust() evolution method */
+
+#define GSL_ODEIV_HADJ_INC   1  /* step was increased */
+#define GSL_ODEIV_HADJ_NIL   0  /* step unchanged     */
+#define GSL_ODEIV_HADJ_DEC (-1) /* step decreased     */
+
+/* General step size control methods.
+ *
+ * The hadjust() method controls the adjustment of
+ * step size given the result of a step and the error.
+ * Valid hadjust() methods must return one of the codes below.
+ * errlevel function calculates the desired error level D0.
+ *
+ * The general data can be used by specializations
+ * to store state and control their heuristics.
+ */
+
+gsl_odeiv2_control *gsl_odeiv2_control_alloc (const gsl_odeiv2_control_type *
+                                              T);
+int gsl_odeiv2_control_init (gsl_odeiv2_control * c, double eps_abs,
+                             double eps_rel, double a_y, double a_dydt);
+void gsl_odeiv2_control_free (gsl_odeiv2_control * c);
+int gsl_odeiv2_control_hadjust (gsl_odeiv2_control * c, gsl_odeiv2_step * s,
+                                const double y[], const double yerr[],
+                                const double dydt[], double *h);
+const char *gsl_odeiv2_control_name (const gsl_odeiv2_control * c);
+int gsl_odeiv2_control_errlevel (gsl_odeiv2_control * c, const double y,
+                                 const double dydt, const double h,
+                                 const size_t ind, double *errlev);
+int gsl_odeiv2_control_set_driver (gsl_odeiv2_control * c,
+                                   const gsl_odeiv2_driver * d);
+
+/* Available control object constructors.
+ *
+ * The standard control object is a four parameter heuristic
+ * defined as follows:
+ *    D0 = eps_abs + eps_rel * (a_y |y| + a_dydt h |y'|)
+ *    D1 = |yerr|
+ *    q  = consistency order of method (q=4 for 4(5) embedded RK)
+ *    S  = safety factor (0.9 say)
+ *
+ *                      /  (D0/D1)^(1/(q+1))  D0 >= D1
+ *    h_NEW = S h_OLD * |
+ *                      \  (D0/D1)^(1/q)      D0 < D1
+ *
+ * This encompasses all the standard error scaling methods.
+ *
+ * The y method is the standard method with a_y=1, a_dydt=0.
+ * The yp method is the standard method with a_y=0, a_dydt=1.
+ */
+
+gsl_odeiv2_control *gsl_odeiv2_control_standard_new (double eps_abs,
+                                                     double eps_rel,
+                                                     double a_y,
+                                                     double a_dydt);
+gsl_odeiv2_control *gsl_odeiv2_control_y_new (double eps_abs, double eps_rel);
+gsl_odeiv2_control *gsl_odeiv2_control_yp_new (double eps_abs,
+                                               double eps_rel);
+
+/* This controller computes errors using different absolute errors for
+ * each component
+ *
+ *    D0 = eps_abs * scale_abs[i] + eps_rel * (a_y |y| + a_dydt h |y'|)
+ */
+
+gsl_odeiv2_control *gsl_odeiv2_control_scaled_new (double eps_abs,
+                                                   double eps_rel, double a_y,
+                                                   double a_dydt,
+                                                   const double scale_abs[],
+                                                   size_t dim);
+
+/* Evolution object */
+
+struct gsl_odeiv2_evolve_struct
+{
+  size_t dimension;
+  double *y0;
+  double *yerr;
+  double *dydt_in;
+  double *dydt_out;
+  double last_step;
+  unsigned long int count;
+  unsigned long int failed_steps;
+  const gsl_odeiv2_driver *driver;
+};
+
+/* Evolution object methods */
+
+gsl_odeiv2_evolve *gsl_odeiv2_evolve_alloc (size_t dim);
+int gsl_odeiv2_evolve_apply (gsl_odeiv2_evolve * e, gsl_odeiv2_control * con,
+                             gsl_odeiv2_step * step,
+                             const gsl_odeiv2_system * dydt, double *t,
+                             double t1, double *h, double y[]);
+int gsl_odeiv2_evolve_apply_fixed_step (gsl_odeiv2_evolve * e,
+                                        gsl_odeiv2_control * con,
+                                        gsl_odeiv2_step * step,
+                                        const gsl_odeiv2_system * dydt,
+                                        double *t, const double h0,
+                                        double y[]);
+int gsl_odeiv2_evolve_reset (gsl_odeiv2_evolve * e);
+void gsl_odeiv2_evolve_free (gsl_odeiv2_evolve * e);
+int gsl_odeiv2_evolve_set_driver (gsl_odeiv2_evolve * e,
+                                  const gsl_odeiv2_driver * d);
+
+/* Driver object
+ *
+ * This is a high level wrapper for step, control and
+ * evolve objects. 
+ */
+
+struct gsl_odeiv2_driver_struct
+{
+  const gsl_odeiv2_system *sys; /* ODE system */
+  gsl_odeiv2_step *s;           /* stepper object */
+  gsl_odeiv2_control *c;        /* control object */
+  gsl_odeiv2_evolve *e;         /* evolve object */
+  double h;                     /* step size */
+  double hmin;                  /* minimum step size allowed */
+  double hmax;                  /* maximum step size allowed */
+  unsigned long int n;          /* number of steps taken */
+  unsigned long int nmax;       /* Maximum number of steps allowed */
+};
+
+/* Driver object methods */
+
+gsl_odeiv2_driver *gsl_odeiv2_driver_alloc_y_new (const gsl_odeiv2_system *
+                                                  sys,
+                                                  const gsl_odeiv2_step_type *
+                                                  T, const double hstart,
+                                                  const double epsabs,
+                                                  const double epsrel);
+gsl_odeiv2_driver *gsl_odeiv2_driver_alloc_yp_new (const gsl_odeiv2_system *
+                                                   sys,
+                                                   const gsl_odeiv2_step_type
+                                                   * T, const double hstart,
+                                                   const double epsabs,
+                                                   const double epsrel);
+gsl_odeiv2_driver *gsl_odeiv2_driver_alloc_scaled_new (const gsl_odeiv2_system
+                                                       * sys,
+                                                       const
+                                                       gsl_odeiv2_step_type *
+                                                       T, const double hstart,
+                                                       const double epsabs,
+                                                       const double epsrel,
+                                                       const double a_y,
+                                                       const double a_dydt,
+                                                       const double
+                                                       scale_abs[]);
+gsl_odeiv2_driver *gsl_odeiv2_driver_alloc_standard_new (const
+                                                         gsl_odeiv2_system *
+                                                         sys,
+                                                         const
+                                                         gsl_odeiv2_step_type
+                                                         * T,
+                                                         const double hstart,
+                                                         const double epsabs,
+                                                         const double epsrel,
+                                                         const double a_y,
+                                                         const double a_dydt);
+int gsl_odeiv2_driver_set_hmin (gsl_odeiv2_driver * d, const double hmin);
+int gsl_odeiv2_driver_set_hmax (gsl_odeiv2_driver * d, const double hmax);
+int gsl_odeiv2_driver_set_nmax (gsl_odeiv2_driver * d,
+                                const unsigned long int nmax);
+int gsl_odeiv2_driver_apply (gsl_odeiv2_driver * d, double *t,
+                             const double t1, double y[]);
+int gsl_odeiv2_driver_apply_fixed_step (gsl_odeiv2_driver * d, double *t,
+                                        const double h,
+                                        const unsigned long int n,
+                                        double y[]);
+int gsl_odeiv2_driver_reset (gsl_odeiv2_driver * d);
+void gsl_odeiv2_driver_free (gsl_odeiv2_driver * state);
+
+__END_DECLS
+#endif /* __GSL_ODEIV2_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permutation.h b/util/X86LINUX64/include/gsl/gsl_permutation.h
new file mode 100644 (file)
index 0000000..10ac0f5
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permutation.h
@@ -0,0 +1,100 @@
+/* permutation/gsl_permutation.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2004, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTATION_H__
+#define __GSL_PERMUTATION_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_permutation_struct
+{
+  size_t size;
+  size_t *data;
+};
+
+typedef struct gsl_permutation_struct gsl_permutation;
+
+gsl_permutation *gsl_permutation_alloc (const size_t n);
+gsl_permutation *gsl_permutation_calloc (const size_t n);
+void gsl_permutation_init (gsl_permutation * p);
+void gsl_permutation_free (gsl_permutation * p);
+int gsl_permutation_memcpy (gsl_permutation * dest, const gsl_permutation * src);
+
+int gsl_permutation_fread (FILE * stream, gsl_permutation * p);
+int gsl_permutation_fwrite (FILE * stream, const gsl_permutation * p);
+int gsl_permutation_fscanf (FILE * stream, gsl_permutation * p);
+int gsl_permutation_fprintf (FILE * stream, const gsl_permutation * p, const char *format);
+
+size_t gsl_permutation_size (const gsl_permutation * p);
+size_t * gsl_permutation_data (const gsl_permutation * p);
+
+int gsl_permutation_swap (gsl_permutation * p, const size_t i, const size_t j);
+
+int gsl_permutation_valid (const gsl_permutation * p);
+void gsl_permutation_reverse (gsl_permutation * p);
+int gsl_permutation_inverse (gsl_permutation * inv, const gsl_permutation * p);
+int gsl_permutation_next (gsl_permutation * p);
+int gsl_permutation_prev (gsl_permutation * p);
+int gsl_permutation_mul (gsl_permutation * p, const gsl_permutation * pa, const gsl_permutation * pb);
+
+int gsl_permutation_linear_to_canonical (gsl_permutation * q, const gsl_permutation * p);
+int gsl_permutation_canonical_to_linear (gsl_permutation * p, const gsl_permutation * q);
+
+size_t gsl_permutation_inversions (const gsl_permutation * p);
+size_t gsl_permutation_linear_cycles (const gsl_permutation * p);
+size_t gsl_permutation_canonical_cycles (const gsl_permutation * q);
+
+INLINE_DECL size_t gsl_permutation_get (const gsl_permutation * p, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+size_t
+gsl_permutation_get (const gsl_permutation * p, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= p->size))
+    {
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, 0);
+    }
+#endif
+  return p->data[i];
+}
+
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTATION_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute.h b/util/X86LINUX64/include/gsl/gsl_permute.h
new file mode 100644 (file)
index 0000000..23f09a6
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute.h
@@ -0,0 +1,24 @@
+#ifndef __GSL_PERMUTE_H__
+#define __GSL_PERMUTE_H__
+
+#include <gsl/gsl_permute_complex_long_double.h>
+#include <gsl/gsl_permute_complex_double.h>
+#include <gsl/gsl_permute_complex_float.h>
+
+#include <gsl/gsl_permute_long_double.h>
+#include <gsl/gsl_permute_double.h>
+#include <gsl/gsl_permute_float.h>
+
+#include <gsl/gsl_permute_ulong.h>
+#include <gsl/gsl_permute_long.h>
+
+#include <gsl/gsl_permute_uint.h>
+#include <gsl/gsl_permute_int.h>
+
+#include <gsl/gsl_permute_ushort.h>
+#include <gsl/gsl_permute_short.h>
+
+#include <gsl/gsl_permute_uchar.h>
+#include <gsl/gsl_permute_char.h>
+
+#endif /* __GSL_PERMUTE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_char.h b/util/X86LINUX64/include/gsl/gsl_permute_char.h
new file mode 100644 (file)
index 0000000..bf2ebb1
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_char.h
@@ -0,0 +1,44 @@
+/* permutation/gsl_permute_char.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_CHAR_H__
+#define __GSL_PERMUTE_CHAR_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_char (const size_t * p, char * data, const size_t stride, const size_t n);
+int gsl_permute_char_inverse (const size_t * p, char * data, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_CHAR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_complex_double.h b/util/X86LINUX64/include/gsl/gsl_permute_complex_double.h
new file mode 100644 (file)
index 0000000..c20442b
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_complex_double.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_complex_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_COMPLEX_DOUBLE_H__
+#define __GSL_PERMUTE_COMPLEX_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_complex (const size_t * p, double * data, const size_t stride, const size_t n);
+int gsl_permute_complex_inverse (const size_t * p, double * data, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_COMPLEX_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_complex_float.h b/util/X86LINUX64/include/gsl/gsl_permute_complex_float.h
new file mode 100644 (file)
index 0000000..65ee0fe
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_complex_float.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_complex_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_COMPLEX_FLOAT_H__
+#define __GSL_PERMUTE_COMPLEX_FLOAT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_complex_float (const size_t * p, float * data, const size_t stride, const size_t n);
+int gsl_permute_complex_float_inverse (const size_t * p, float * data, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_COMPLEX_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_complex_long_double.h b/util/X86LINUX64/include/gsl/gsl_permute_complex_long_double.h
new file mode 100644 (file)
index 0000000..4849b15
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_complex_long_double.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_complex_long_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_COMPLEX_LONG_DOUBLE_H__
+#define __GSL_PERMUTE_COMPLEX_LONG_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_complex_long_double (const size_t * p, long double * data, const size_t stride, const size_t n);
+int gsl_permute_complex_long_double_inverse (const size_t * p, long double * data, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_COMPLEX_LONG_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_double.h b/util/X86LINUX64/include/gsl/gsl_permute_double.h
new file mode 100644 (file)
index 0000000..58be181
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_double.h
@@ -0,0 +1,44 @@
+/* permutation/gsl_permute_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_DOUBLE_H__
+#define __GSL_PERMUTE_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute (const size_t * p, double * data, const size_t stride, const size_t n);
+int gsl_permute_inverse (const size_t * p, double * data, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_float.h b/util/X86LINUX64/include/gsl/gsl_permute_float.h
new file mode 100644 (file)
index 0000000..bc79bd5
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_float.h
@@ -0,0 +1,44 @@
+/* permutation/gsl_permute_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_FLOAT_H__
+#define __GSL_PERMUTE_FLOAT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_float (const size_t * p, float * data, const size_t stride, const size_t n);
+int gsl_permute_float_inverse (const size_t * p, float * data, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_int.h b/util/X86LINUX64/include/gsl/gsl_permute_int.h
new file mode 100644 (file)
index 0000000..b6ff500
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_int.h
@@ -0,0 +1,44 @@
+/* permutation/gsl_permute_int.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_INT_H__
+#define __GSL_PERMUTE_INT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_int (const size_t * p, int * data, const size_t stride, const size_t n);
+int gsl_permute_int_inverse (const size_t * p, int * data, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_INT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_long.h b/util/X86LINUX64/include/gsl/gsl_permute_long.h
new file mode 100644 (file)
index 0000000..383294c
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_long.h
@@ -0,0 +1,44 @@
+/* permutation/gsl_permute_long.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_LONG_H__
+#define __GSL_PERMUTE_LONG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_long (const size_t * p, long * data, const size_t stride, const size_t n);
+int gsl_permute_long_inverse (const size_t * p, long * data, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_LONG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_long_double.h b/util/X86LINUX64/include/gsl/gsl_permute_long_double.h
new file mode 100644 (file)
index 0000000..f58e1cd
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_long_double.h
@@ -0,0 +1,44 @@
+/* permutation/gsl_permute_long_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_LONG_DOUBLE_H__
+#define __GSL_PERMUTE_LONG_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_long_double (const size_t * p, long double * data, const size_t stride, const size_t n);
+int gsl_permute_long_double_inverse (const size_t * p, long double * data, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_LONG_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_short.h b/util/X86LINUX64/include/gsl/gsl_permute_short.h
new file mode 100644 (file)
index 0000000..39cf55d
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_short.h
@@ -0,0 +1,44 @@
+/* permutation/gsl_permute_short.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_SHORT_H__
+#define __GSL_PERMUTE_SHORT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_short (const size_t * p, short * data, const size_t stride, const size_t n);
+int gsl_permute_short_inverse (const size_t * p, short * data, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_SHORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_uchar.h b/util/X86LINUX64/include/gsl/gsl_permute_uchar.h
new file mode 100644 (file)
index 0000000..54bb401
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_uchar.h
@@ -0,0 +1,44 @@
+/* permutation/gsl_permute_uchar.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_UCHAR_H__
+#define __GSL_PERMUTE_UCHAR_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_uchar (const size_t * p, unsigned char * data, const size_t stride, const size_t n);
+int gsl_permute_uchar_inverse (const size_t * p, unsigned char * data, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_UCHAR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_uint.h b/util/X86LINUX64/include/gsl/gsl_permute_uint.h
new file mode 100644 (file)
index 0000000..8915b7b
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_uint.h
@@ -0,0 +1,44 @@
+/* permutation/gsl_permute_uint.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_UINT_H__
+#define __GSL_PERMUTE_UINT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_uint (const size_t * p, unsigned int * data, const size_t stride, const size_t n);
+int gsl_permute_uint_inverse (const size_t * p, unsigned int * data, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_UINT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_ulong.h b/util/X86LINUX64/include/gsl/gsl_permute_ulong.h
new file mode 100644 (file)
index 0000000..0084c50
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_ulong.h
@@ -0,0 +1,44 @@
+/* permutation/gsl_permute_ulong.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_ULONG_H__
+#define __GSL_PERMUTE_ULONG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_ulong (const size_t * p, unsigned long * data, const size_t stride, const size_t n);
+int gsl_permute_ulong_inverse (const size_t * p, unsigned long * data, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_ULONG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_ushort.h b/util/X86LINUX64/include/gsl/gsl_permute_ushort.h
new file mode 100644 (file)
index 0000000..eff079a
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_ushort.h
@@ -0,0 +1,44 @@
+/* permutation/gsl_permute_ushort.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_USHORT_H__
+#define __GSL_PERMUTE_USHORT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_ushort (const size_t * p, unsigned short * data, const size_t stride, const size_t n);
+int gsl_permute_ushort_inverse (const size_t * p, unsigned short * data, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_USHORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector.h b/util/X86LINUX64/include/gsl/gsl_permute_vector.h
new file mode 100644 (file)
index 0000000..4369e49
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector.h
@@ -0,0 +1,24 @@
+#ifndef __GSL_PERMUTE_VECTOR_H__
+#define __GSL_PERMUTE_VECTOR_H__
+
+#include <gsl/gsl_permute_vector_complex_long_double.h>
+#include <gsl/gsl_permute_vector_complex_double.h>
+#include <gsl/gsl_permute_vector_complex_float.h>
+
+#include <gsl/gsl_permute_vector_long_double.h>
+#include <gsl/gsl_permute_vector_double.h>
+#include <gsl/gsl_permute_vector_float.h>
+
+#include <gsl/gsl_permute_vector_ulong.h>
+#include <gsl/gsl_permute_vector_long.h>
+
+#include <gsl/gsl_permute_vector_uint.h>
+#include <gsl/gsl_permute_vector_int.h>
+
+#include <gsl/gsl_permute_vector_ushort.h>
+#include <gsl/gsl_permute_vector_short.h>
+
+#include <gsl/gsl_permute_vector_uchar.h>
+#include <gsl/gsl_permute_vector_char.h>
+
+#endif /* __GSL_PERMUTE_VECTOR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector_char.h b/util/X86LINUX64/include/gsl/gsl_permute_vector_char.h
new file mode 100644 (file)
index 0000000..15278ed
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector_char.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_vector_char.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_VECTOR_CHAR_H__
+#define __GSL_PERMUTE_VECTOR_CHAR_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_char.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_vector_char (const gsl_permutation * p, gsl_vector_char * v);
+int gsl_permute_vector_char_inverse (const gsl_permutation * p, gsl_vector_char * v);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_VECTOR_CHAR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector_complex_double.h b/util/X86LINUX64/include/gsl/gsl_permute_vector_complex_double.h
new file mode 100644 (file)
index 0000000..60558e2
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector_complex_double.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_vector_complex_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_VECTOR_COMPLEX_DOUBLE_H__
+#define __GSL_PERMUTE_VECTOR_COMPLEX_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_complex_double.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_vector_complex (const gsl_permutation * p, gsl_vector_complex * v);
+int gsl_permute_vector_complex_inverse (const gsl_permutation * p, gsl_vector_complex * v);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_VECTOR_COMPLEX_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector_complex_float.h b/util/X86LINUX64/include/gsl/gsl_permute_vector_complex_float.h
new file mode 100644 (file)
index 0000000..b08696b
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector_complex_float.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_vector_complex_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_VECTOR_COMPLEX_FLOAT_H__
+#define __GSL_PERMUTE_VECTOR_COMPLEX_FLOAT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_complex_float.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_vector_complex_float (const gsl_permutation * p, gsl_vector_complex_float * v);
+int gsl_permute_vector_complex_float_inverse (const gsl_permutation * p, gsl_vector_complex_float * v);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_VECTOR_COMPLEX_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector_complex_long_double.h b/util/X86LINUX64/include/gsl/gsl_permute_vector_complex_long_double.h
new file mode 100644 (file)
index 0000000..c19ac25
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector_complex_long_double.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_vector_complex_long_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_VECTOR_COMPLEX_LONG_DOUBLE_H__
+#define __GSL_PERMUTE_VECTOR_COMPLEX_LONG_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_complex_long_double.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_vector_complex_long_double (const gsl_permutation * p, gsl_vector_complex_long_double * v);
+int gsl_permute_vector_complex_long_double_inverse (const gsl_permutation * p, gsl_vector_complex_long_double * v);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_VECTOR_COMPLEX_LONG_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector_double.h b/util/X86LINUX64/include/gsl/gsl_permute_vector_double.h
new file mode 100644 (file)
index 0000000..65f6167
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector_double.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_vector_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_VECTOR_DOUBLE_H__
+#define __GSL_PERMUTE_VECTOR_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_double.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_vector (const gsl_permutation * p, gsl_vector * v);
+int gsl_permute_vector_inverse (const gsl_permutation * p, gsl_vector * v);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_VECTOR_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector_float.h b/util/X86LINUX64/include/gsl/gsl_permute_vector_float.h
new file mode 100644 (file)
index 0000000..bdd9d1a
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector_float.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_vector_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_VECTOR_FLOAT_H__
+#define __GSL_PERMUTE_VECTOR_FLOAT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_float.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_vector_float (const gsl_permutation * p, gsl_vector_float * v);
+int gsl_permute_vector_float_inverse (const gsl_permutation * p, gsl_vector_float * v);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_VECTOR_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector_int.h b/util/X86LINUX64/include/gsl/gsl_permute_vector_int.h
new file mode 100644 (file)
index 0000000..3316d50
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector_int.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_vector_int.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_VECTOR_INT_H__
+#define __GSL_PERMUTE_VECTOR_INT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_int.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_vector_int (const gsl_permutation * p, gsl_vector_int * v);
+int gsl_permute_vector_int_inverse (const gsl_permutation * p, gsl_vector_int * v);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_VECTOR_INT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector_long.h b/util/X86LINUX64/include/gsl/gsl_permute_vector_long.h
new file mode 100644 (file)
index 0000000..291f949
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector_long.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_vector_long.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_VECTOR_LONG_H__
+#define __GSL_PERMUTE_VECTOR_LONG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_long.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_vector_long (const gsl_permutation * p, gsl_vector_long * v);
+int gsl_permute_vector_long_inverse (const gsl_permutation * p, gsl_vector_long * v);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_VECTOR_LONG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector_long_double.h b/util/X86LINUX64/include/gsl/gsl_permute_vector_long_double.h
new file mode 100644 (file)
index 0000000..a6b0296
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector_long_double.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_vector_long_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_VECTOR_LONG_DOUBLE_H__
+#define __GSL_PERMUTE_VECTOR_LONG_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_long_double.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_vector_long_double (const gsl_permutation * p, gsl_vector_long_double * v);
+int gsl_permute_vector_long_double_inverse (const gsl_permutation * p, gsl_vector_long_double * v);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_VECTOR_LONG_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector_short.h b/util/X86LINUX64/include/gsl/gsl_permute_vector_short.h
new file mode 100644 (file)
index 0000000..cd0dd6b
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector_short.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_vector_short.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_VECTOR_SHORT_H__
+#define __GSL_PERMUTE_VECTOR_SHORT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_short.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_vector_short (const gsl_permutation * p, gsl_vector_short * v);
+int gsl_permute_vector_short_inverse (const gsl_permutation * p, gsl_vector_short * v);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_VECTOR_SHORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector_uchar.h b/util/X86LINUX64/include/gsl/gsl_permute_vector_uchar.h
new file mode 100644 (file)
index 0000000..df069a0
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector_uchar.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_vector_uchar.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_VECTOR_UCHAR_H__
+#define __GSL_PERMUTE_VECTOR_UCHAR_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_uchar.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_vector_uchar (const gsl_permutation * p, gsl_vector_uchar * v);
+int gsl_permute_vector_uchar_inverse (const gsl_permutation * p, gsl_vector_uchar * v);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_VECTOR_UCHAR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector_uint.h b/util/X86LINUX64/include/gsl/gsl_permute_vector_uint.h
new file mode 100644 (file)
index 0000000..ee5218a
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector_uint.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_vector_uint.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_VECTOR_UINT_H__
+#define __GSL_PERMUTE_VECTOR_UINT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_uint.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_vector_uint (const gsl_permutation * p, gsl_vector_uint * v);
+int gsl_permute_vector_uint_inverse (const gsl_permutation * p, gsl_vector_uint * v);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_VECTOR_UINT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector_ulong.h b/util/X86LINUX64/include/gsl/gsl_permute_vector_ulong.h
new file mode 100644 (file)
index 0000000..e536d9a
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector_ulong.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_vector_ulong.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_VECTOR_ULONG_H__
+#define __GSL_PERMUTE_VECTOR_ULONG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_ulong.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_vector_ulong (const gsl_permutation * p, gsl_vector_ulong * v);
+int gsl_permute_vector_ulong_inverse (const gsl_permutation * p, gsl_vector_ulong * v);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_VECTOR_ULONG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_permute_vector_ushort.h b/util/X86LINUX64/include/gsl/gsl_permute_vector_ushort.h
new file mode 100644 (file)
index 0000000..7533ba0
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_permute_vector_ushort.h
@@ -0,0 +1,45 @@
+/* permutation/gsl_permute_vector_ushort.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_PERMUTE_VECTOR_USHORT_H__
+#define __GSL_PERMUTE_VECTOR_USHORT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_ushort.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_permute_vector_ushort (const gsl_permutation * p, gsl_vector_ushort * v);
+int gsl_permute_vector_ushort_inverse (const gsl_permutation * p, gsl_vector_ushort * v);
+
+__END_DECLS
+
+#endif /* __GSL_PERMUTE_VECTOR_USHORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_poly.h b/util/X86LINUX64/include/gsl/gsl_poly.h
new file mode 100644 (file)
index 0000000..ab1036d
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_poly.h
@@ -0,0 +1,179 @@
+/* poly/gsl_poly.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2004, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_POLY_H__
+#define __GSL_POLY_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_complex.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Evaluate polynomial
+ *
+ * c[0] + c[1] x + c[2] x^2 + ... + c[len-1] x^(len-1)
+ *
+ * exceptions: none
+ */
+
+/* real polynomial, real x */
+INLINE_DECL double gsl_poly_eval(const double c[], const int len, const double x);
+
+/* real polynomial, complex x */
+INLINE_DECL gsl_complex gsl_poly_complex_eval (const double c [], const int len, const gsl_complex z);
+
+/* complex polynomial, complex x */
+INLINE_DECL gsl_complex gsl_complex_poly_complex_eval (const gsl_complex c [], const int len, const gsl_complex z);
+
+int gsl_poly_eval_derivs(const double c[], const size_t lenc, const double x, double res[], const size_t lenres);
+
+#ifdef HAVE_INLINE
+INLINE_FUN
+double 
+gsl_poly_eval(const double c[], const int len, const double x)
+{
+  int i;
+  double ans = c[len-1];
+  for(i=len-1; i>0; i--) ans = c[i-1] + x * ans;
+  return ans;
+}
+
+INLINE_FUN
+gsl_complex
+gsl_poly_complex_eval(const double c[], const int len, const gsl_complex z)
+{
+  int i;
+  gsl_complex ans;
+  GSL_SET_COMPLEX (&ans, c[len-1], 0.0);
+  for(i=len-1; i>0; i--) {
+    /* The following three lines are equivalent to
+       ans = gsl_complex_add_real (gsl_complex_mul (z, ans), c[i-1]); 
+       but faster */
+    double tmp = c[i-1] + GSL_REAL (z) * GSL_REAL (ans) - GSL_IMAG (z) * GSL_IMAG (ans);
+    GSL_SET_IMAG (&ans, GSL_IMAG (z) * GSL_REAL (ans) + GSL_REAL (z) * GSL_IMAG (ans));
+    GSL_SET_REAL (&ans, tmp);
+  } 
+  return ans;
+}
+
+INLINE_FUN
+gsl_complex
+gsl_complex_poly_complex_eval(const gsl_complex c[], const int len, const gsl_complex z)
+{
+  int i;
+  gsl_complex ans = c[len-1];
+  for(i=len-1; i>0; i--) {
+    /* The following three lines are equivalent to
+       ans = gsl_complex_add (c[i-1], gsl_complex_mul (x, ans));
+       but faster */
+    double tmp = GSL_REAL (c[i-1]) + GSL_REAL (z) * GSL_REAL (ans) - GSL_IMAG (z) * GSL_IMAG (ans);
+    GSL_SET_IMAG (&ans, GSL_IMAG (c[i-1]) + GSL_IMAG (z) * GSL_REAL (ans) + GSL_REAL (z) * GSL_IMAG (ans));
+    GSL_SET_REAL (&ans, tmp);
+  }
+  return ans;
+}
+#endif /* HAVE_INLINE */
+
+/* Work with divided-difference polynomials, Abramowitz & Stegun 25.2.26 */
+
+int
+gsl_poly_dd_init (double dd[], const double x[], const double y[],
+                  size_t size);
+
+INLINE_DECL double
+gsl_poly_dd_eval (const double dd[], const double xa[], const size_t size, const double x);
+
+#ifdef HAVE_INLINE
+INLINE_FUN
+double 
+gsl_poly_dd_eval(const double dd[], const double xa[], const size_t size, const double x)
+{
+  size_t i;
+  double y = dd[size - 1];
+  for (i = size - 1; i--;) y = dd[i] + (x - xa[i]) * y;
+  return y;
+}
+#endif /* HAVE_INLINE */
+
+
+int
+gsl_poly_dd_taylor (double c[], double xp,
+                    const double dd[], const double x[], size_t size,
+                    double w[]);
+
+/* Solve for real or complex roots of the standard quadratic equation,
+ * returning the number of real roots.
+ *
+ * Roots are returned ordered.
+ */
+int gsl_poly_solve_quadratic (double a, double b, double c, 
+                              double * x0, double * x1);
+
+int 
+gsl_poly_complex_solve_quadratic (double a, double b, double c, 
+                                  gsl_complex * z0, gsl_complex * z1);
+
+
+/* Solve for real roots of the cubic equation
+ * x^3 + a x^2 + b x + c = 0, returning the
+ * number of real roots.
+ *
+ * Roots are returned ordered.
+ */
+int gsl_poly_solve_cubic (double a, double b, double c, 
+                          double * x0, double * x1, double * x2);
+
+int 
+gsl_poly_complex_solve_cubic (double a, double b, double c, 
+                              gsl_complex * z0, gsl_complex * z1, 
+                              gsl_complex * z2);
+
+
+/* Solve for the complex roots of a general real polynomial */
+
+typedef struct 
+{ 
+  size_t nc ;
+  double * matrix ; 
+} 
+gsl_poly_complex_workspace ;
+
+gsl_poly_complex_workspace * gsl_poly_complex_workspace_alloc (size_t n);
+void gsl_poly_complex_workspace_free (gsl_poly_complex_workspace * w);
+
+int
+gsl_poly_complex_solve (const double * a, size_t n, 
+                        gsl_poly_complex_workspace * w,
+                        gsl_complex_packed_ptr z);
+
+__END_DECLS
+
+#endif /* __GSL_POLY_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_pow_int.h b/util/X86LINUX64/include/gsl/gsl_pow_int.h
new file mode 100644 (file)
index 0000000..6aa01fb
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_pow_int.h
@@ -0,0 +1,61 @@
+/* gsl_pow_int.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2004, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_POW_INT_H__
+#define __GSL_POW_INT_H__
+#include <gsl/gsl_inline.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+INLINE_DECL double gsl_pow_2(const double x);
+INLINE_DECL double gsl_pow_3(const double x);
+INLINE_DECL double gsl_pow_4(const double x);
+INLINE_DECL double gsl_pow_5(const double x);
+INLINE_DECL double gsl_pow_6(const double x);
+INLINE_DECL double gsl_pow_7(const double x);
+INLINE_DECL double gsl_pow_8(const double x);
+INLINE_DECL double gsl_pow_9(const double x);
+
+#ifdef HAVE_INLINE
+INLINE_FUN double gsl_pow_2(const double x) { return x*x;   }
+INLINE_FUN double gsl_pow_3(const double x) { return x*x*x; }
+INLINE_FUN double gsl_pow_4(const double x) { double x2 = x*x;   return x2*x2;    }
+INLINE_FUN double gsl_pow_5(const double x) { double x2 = x*x;   return x2*x2*x;  }
+INLINE_FUN double gsl_pow_6(const double x) { double x2 = x*x;   return x2*x2*x2; }
+INLINE_FUN double gsl_pow_7(const double x) { double x3 = x*x*x; return x3*x3*x;  }
+INLINE_FUN double gsl_pow_8(const double x) { double x2 = x*x;   double x4 = x2*x2; return x4*x4; }
+INLINE_FUN double gsl_pow_9(const double x) { double x3 = x*x*x; return x3*x3*x3; }
+#endif
+
+double gsl_pow_int(double x, int n);
+double gsl_pow_uint(double x, unsigned int n);
+
+__END_DECLS
+
+#endif /* __GSL_POW_INT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_precision.h b/util/X86LINUX64/include/gsl/gsl_precision.h
new file mode 100644 (file)
index 0000000..97a204e
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_precision.h
@@ -0,0 +1,66 @@
+/* gsl_precision.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  B. Gough and G. Jungman */
+
+#ifndef __GSL_PRECISION_H__
+#define __GSL_PRECISION_H__
+#include <gsl/gsl_types.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* A type for the precision indicator.
+ * This is mainly for pedagogy.
+ */
+typedef  unsigned int  gsl_prec_t;
+
+
+/* The number of precision types.
+ * Remember that precision-mode
+ * can index an array.
+ */
+#define _GSL_PREC_T_NUM 3
+
+
+/* Arrays containing derived
+ * precision constants for the
+ * different precision levels.
+ */
+GSL_VAR const double gsl_prec_eps[];
+GSL_VAR const double gsl_prec_sqrt_eps[];
+GSL_VAR const double gsl_prec_root3_eps[];
+GSL_VAR const double gsl_prec_root4_eps[];
+GSL_VAR const double gsl_prec_root5_eps[];
+GSL_VAR const double gsl_prec_root6_eps[];
+
+
+__END_DECLS
+
+#endif /* __GSL_PRECISION_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_qrng.h b/util/X86LINUX64/include/gsl/gsl_qrng.h
new file mode 100644 (file)
index 0000000..47de500
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_qrng.h
@@ -0,0 +1,111 @@
+/* Author: G. Jungman + modifications from O. Teytaud
+ */
+#ifndef __GSL_QRNG_H__
+#define __GSL_QRNG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Once again, more inane C-style OOP... kill me now. */
+
+/* Structure describing a type of generator.
+ */
+typedef struct
+{
+  const char * name;
+  unsigned int max_dimension;
+  size_t (*state_size) (unsigned int dimension);
+  int (*init_state) (void * state, unsigned int dimension);
+  int (*get) (void * state, unsigned int dimension, double x[]);
+}
+gsl_qrng_type;
+
+/* Structure describing a generator instance of a
+ * specified type, with generator-specific state info
+ * and dimension-specific info.
+ */
+typedef struct
+{
+  const gsl_qrng_type * type;
+  unsigned int dimension;
+  size_t state_size;
+  void * state;
+}
+gsl_qrng;
+
+
+/* Supported generator types.
+ */
+GSL_VAR const gsl_qrng_type * gsl_qrng_niederreiter_2;
+GSL_VAR const gsl_qrng_type * gsl_qrng_sobol;
+GSL_VAR const gsl_qrng_type * gsl_qrng_halton;
+GSL_VAR const gsl_qrng_type * gsl_qrng_reversehalton;
+
+
+/* Allocate and initialize a generator
+ * of the specified type, in the given
+ * space dimension.
+ */
+gsl_qrng * gsl_qrng_alloc (const gsl_qrng_type * T, unsigned int dimension);
+
+
+/* Copy a generator. */
+int gsl_qrng_memcpy (gsl_qrng * dest, const gsl_qrng * src);
+
+
+/* Clone a generator. */
+gsl_qrng * gsl_qrng_clone (const gsl_qrng * q);
+
+
+/* Free a generator. */
+void gsl_qrng_free (gsl_qrng * q);
+
+
+/* Intialize a generator. */
+void gsl_qrng_init (gsl_qrng * q);
+
+
+/* Get the standardized name of the generator. */
+const char * gsl_qrng_name (const gsl_qrng * q);
+
+
+/* ISN'T THIS CONFUSING FOR PEOPLE?
+  WHAT IF SOMEBODY TRIES TO COPY WITH THIS ???
+  */
+size_t gsl_qrng_size (const gsl_qrng * q);
+
+
+void * gsl_qrng_state (const gsl_qrng * q);
+
+
+/* Retrieve next vector in sequence. */
+INLINE_DECL int gsl_qrng_get (const gsl_qrng * q, double x[]);
+
+#ifdef HAVE_INLINE
+INLINE_FUN int gsl_qrng_get (const gsl_qrng * q, double x[])
+{
+  return (q->type->get) (q->state, q->dimension, x);
+}
+
+#endif /* HAVE_INLINE */
+
+
+__END_DECLS
+
+
+#endif /* !__GSL_QRNG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_randist.h b/util/X86LINUX64/include/gsl/gsl_randist.h
new file mode 100644 (file)
index 0000000..6f4b0e3
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_randist.h
@@ -0,0 +1,185 @@
+/* randist/gsl_randist.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 James Theiler, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_RANDIST_H__
+#define __GSL_RANDIST_H__
+#include <gsl/gsl_rng.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+unsigned int gsl_ran_bernoulli (const gsl_rng * r, double p);
+double gsl_ran_bernoulli_pdf (const unsigned int k, double p);
+
+double gsl_ran_beta (const gsl_rng * r, const double a, const double b);
+double gsl_ran_beta_pdf (const double x, const double a, const double b);
+
+unsigned int gsl_ran_binomial (const gsl_rng * r, double p, unsigned int n);
+unsigned int gsl_ran_binomial_knuth (const gsl_rng * r, double p, unsigned int n);
+unsigned int gsl_ran_binomial_tpe (const gsl_rng * r, double p, unsigned int n);
+double gsl_ran_binomial_pdf (const unsigned int k, const double p, const unsigned int n);
+
+double gsl_ran_exponential (const gsl_rng * r, const double mu);
+double gsl_ran_exponential_pdf (const double x, const double mu);
+
+double gsl_ran_exppow (const gsl_rng * r, const double a, const double b);
+double gsl_ran_exppow_pdf (const double x, const double a, const double b);
+
+double gsl_ran_cauchy (const gsl_rng * r, const double a);
+double gsl_ran_cauchy_pdf (const double x, const double a);
+
+double gsl_ran_chisq (const gsl_rng * r, const double nu);
+double gsl_ran_chisq_pdf (const double x, const double nu);
+
+void gsl_ran_dirichlet (const gsl_rng * r, const size_t K, const double alpha[], double theta[]);
+double gsl_ran_dirichlet_pdf (const size_t K, const double alpha[], const double theta[]);
+double gsl_ran_dirichlet_lnpdf (const size_t K, const double alpha[], const double theta[]);
+
+double gsl_ran_erlang (const gsl_rng * r, const double a, const double n);
+double gsl_ran_erlang_pdf (const double x, const double a, const double n);
+
+double gsl_ran_fdist (const gsl_rng * r, const double nu1, const double nu2);
+double gsl_ran_fdist_pdf (const double x, const double nu1, const double nu2);
+
+double gsl_ran_flat (const gsl_rng * r, const double a, const double b);
+double gsl_ran_flat_pdf (double x, const double a, const double b);
+
+double gsl_ran_gamma (const gsl_rng * r, const double a, const double b);
+double gsl_ran_gamma_int (const gsl_rng * r, const unsigned int a);
+double gsl_ran_gamma_pdf (const double x, const double a, const double b);
+double gsl_ran_gamma_mt (const gsl_rng * r, const double a, const double b);
+double gsl_ran_gamma_knuth (const gsl_rng * r, const double a, const double b);
+
+double gsl_ran_gaussian (const gsl_rng * r, const double sigma);
+double gsl_ran_gaussian_ratio_method (const gsl_rng * r, const double sigma);
+double gsl_ran_gaussian_ziggurat (const gsl_rng * r, const double sigma);
+double gsl_ran_gaussian_pdf (const double x, const double sigma);
+
+double gsl_ran_ugaussian (const gsl_rng * r);
+double gsl_ran_ugaussian_ratio_method (const gsl_rng * r);
+double gsl_ran_ugaussian_pdf (const double x);
+
+double gsl_ran_gaussian_tail (const gsl_rng * r, const double a, const double sigma);
+double gsl_ran_gaussian_tail_pdf (const double x, const double a, const double sigma);
+
+double gsl_ran_ugaussian_tail (const gsl_rng * r, const double a);
+double gsl_ran_ugaussian_tail_pdf (const double x, const double a);
+
+void gsl_ran_bivariate_gaussian (const gsl_rng * r, double sigma_x, double sigma_y, double rho, double *x, double *y);
+double gsl_ran_bivariate_gaussian_pdf (const double x, const double y, const double sigma_x, const double sigma_y, const double rho);
+
+double gsl_ran_landau (const gsl_rng * r);
+double gsl_ran_landau_pdf (const double x);
+
+unsigned int gsl_ran_geometric (const gsl_rng * r, const double p);
+double gsl_ran_geometric_pdf (const unsigned int k, const double p);
+
+unsigned int gsl_ran_hypergeometric (const gsl_rng * r, unsigned int n1, unsigned int n2, unsigned int t);
+double gsl_ran_hypergeometric_pdf (const unsigned int k, const unsigned int n1, const unsigned int n2, unsigned int t);
+
+double gsl_ran_gumbel1 (const gsl_rng * r, const double a, const double b);
+double gsl_ran_gumbel1_pdf (const double x, const double a, const double b);
+
+double gsl_ran_gumbel2 (const gsl_rng * r, const double a, const double b);
+double gsl_ran_gumbel2_pdf (const double x, const double a, const double b);
+
+double gsl_ran_logistic (const gsl_rng * r, const double a);
+double gsl_ran_logistic_pdf (const double x, const double a);
+
+double gsl_ran_lognormal (const gsl_rng * r, const double zeta, const double sigma);
+double gsl_ran_lognormal_pdf (const double x, const double zeta, const double sigma);
+
+unsigned int gsl_ran_logarithmic (const gsl_rng * r, const double p);
+double gsl_ran_logarithmic_pdf (const unsigned int k, const double p);
+
+void gsl_ran_multinomial (const gsl_rng * r, const size_t K,
+                          const unsigned int N, const double p[],
+                          unsigned int n[] );
+double gsl_ran_multinomial_pdf (const size_t K,
+                                const double p[], const unsigned int n[] );
+double gsl_ran_multinomial_lnpdf (const size_t K,
+                           const double p[], const unsigned int n[] );
+
+
+unsigned int gsl_ran_negative_binomial (const gsl_rng * r, double p, double n);
+double gsl_ran_negative_binomial_pdf (const unsigned int k, const double p, double n);
+
+unsigned int gsl_ran_pascal (const gsl_rng * r, double p, unsigned int n);
+double gsl_ran_pascal_pdf (const unsigned int k, const double p, unsigned int n);
+
+double gsl_ran_pareto (const gsl_rng * r, double a, const double b);
+double gsl_ran_pareto_pdf (const double x, const double a, const double b);
+
+unsigned int gsl_ran_poisson (const gsl_rng * r, double mu);
+void gsl_ran_poisson_array (const gsl_rng * r, size_t n, unsigned int array[],
+                            double mu);
+double gsl_ran_poisson_pdf (const unsigned int k, const double mu);
+
+double gsl_ran_rayleigh (const gsl_rng * r, const double sigma);
+double gsl_ran_rayleigh_pdf (const double x, const double sigma);
+
+double gsl_ran_rayleigh_tail (const gsl_rng * r, const double a, const double sigma);
+double gsl_ran_rayleigh_tail_pdf (const double x, const double a, const double sigma);
+
+double gsl_ran_tdist (const gsl_rng * r, const double nu);
+double gsl_ran_tdist_pdf (const double x, const double nu);
+
+double gsl_ran_laplace (const gsl_rng * r, const double a);
+double gsl_ran_laplace_pdf (const double x, const double a);
+
+double gsl_ran_levy (const gsl_rng * r, const double c, const double alpha);
+double gsl_ran_levy_skew (const gsl_rng * r, const double c, const double alpha, const double beta);
+
+double gsl_ran_weibull (const gsl_rng * r, const double a, const double b);
+double gsl_ran_weibull_pdf (const double x, const double a, const double b);
+
+void gsl_ran_dir_2d (const gsl_rng * r, double * x, double * y);
+void gsl_ran_dir_2d_trig_method (const gsl_rng * r, double * x, double * y);
+void gsl_ran_dir_3d (const gsl_rng * r, double * x, double * y, double * z);
+void gsl_ran_dir_nd (const gsl_rng * r, size_t n, double * x);
+
+void gsl_ran_shuffle (const gsl_rng * r, void * base, size_t nmembm, size_t size);
+int gsl_ran_choose (const gsl_rng * r, void * dest, size_t k, void * src, size_t n, size_t size) ;
+void gsl_ran_sample (const gsl_rng * r, void * dest, size_t k, void * src, size_t n, size_t size) ;
+
+
+typedef struct {                /* struct for Walker algorithm */
+    size_t K;
+    size_t *A;
+    double *F;
+} gsl_ran_discrete_t;
+
+gsl_ran_discrete_t * gsl_ran_discrete_preproc (size_t K, const double *P);
+void gsl_ran_discrete_free(gsl_ran_discrete_t *g);
+size_t gsl_ran_discrete (const gsl_rng *r, const gsl_ran_discrete_t *g);
+double gsl_ran_discrete_pdf (size_t k, const gsl_ran_discrete_t *g);
+
+
+__END_DECLS
+
+#endif /* __GSL_RANDIST_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_rng.h b/util/X86LINUX64/include/gsl/gsl_rng.h
new file mode 100644 (file)
index 0000000..4ec5591
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_rng.h
@@ -0,0 +1,217 @@
+/* rng/gsl_rng.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2004, 2007 James Theiler, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_RNG_H__
+#define __GSL_RNG_H__
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct
+  {
+    const char *name;
+    unsigned long int max;
+    unsigned long int min;
+    size_t size;
+    void (*set) (void *state, unsigned long int seed);
+    unsigned long int (*get) (void *state);
+    double (*get_double) (void *state);
+  }
+gsl_rng_type;
+
+typedef struct
+  {
+    const gsl_rng_type * type;
+    void *state;
+  }
+gsl_rng;
+
+
+/* These structs also need to appear in default.c so you can select
+   them via the environment variable GSL_RNG_TYPE */
+
+GSL_VAR const gsl_rng_type *gsl_rng_borosh13;
+GSL_VAR const gsl_rng_type *gsl_rng_coveyou;
+GSL_VAR const gsl_rng_type *gsl_rng_cmrg;
+GSL_VAR const gsl_rng_type *gsl_rng_fishman18;
+GSL_VAR const gsl_rng_type *gsl_rng_fishman20;
+GSL_VAR const gsl_rng_type *gsl_rng_fishman2x;
+GSL_VAR const gsl_rng_type *gsl_rng_gfsr4;
+GSL_VAR const gsl_rng_type *gsl_rng_knuthran;
+GSL_VAR const gsl_rng_type *gsl_rng_knuthran2;
+GSL_VAR const gsl_rng_type *gsl_rng_knuthran2002;
+GSL_VAR const gsl_rng_type *gsl_rng_lecuyer21;
+GSL_VAR const gsl_rng_type *gsl_rng_minstd;
+GSL_VAR const gsl_rng_type *gsl_rng_mrg;
+GSL_VAR const gsl_rng_type *gsl_rng_mt19937;
+GSL_VAR const gsl_rng_type *gsl_rng_mt19937_1999;
+GSL_VAR const gsl_rng_type *gsl_rng_mt19937_1998;
+GSL_VAR const gsl_rng_type *gsl_rng_r250;
+GSL_VAR const gsl_rng_type *gsl_rng_ran0;
+GSL_VAR const gsl_rng_type *gsl_rng_ran1;
+GSL_VAR const gsl_rng_type *gsl_rng_ran2;
+GSL_VAR const gsl_rng_type *gsl_rng_ran3;
+GSL_VAR const gsl_rng_type *gsl_rng_rand;
+GSL_VAR const gsl_rng_type *gsl_rng_rand48;
+GSL_VAR const gsl_rng_type *gsl_rng_random128_bsd;
+GSL_VAR const gsl_rng_type *gsl_rng_random128_glibc2;
+GSL_VAR const gsl_rng_type *gsl_rng_random128_libc5;
+GSL_VAR const gsl_rng_type *gsl_rng_random256_bsd;
+GSL_VAR const gsl_rng_type *gsl_rng_random256_glibc2;
+GSL_VAR const gsl_rng_type *gsl_rng_random256_libc5;
+GSL_VAR const gsl_rng_type *gsl_rng_random32_bsd;
+GSL_VAR const gsl_rng_type *gsl_rng_random32_glibc2;
+GSL_VAR const gsl_rng_type *gsl_rng_random32_libc5;
+GSL_VAR const gsl_rng_type *gsl_rng_random64_bsd;
+GSL_VAR const gsl_rng_type *gsl_rng_random64_glibc2;
+GSL_VAR const gsl_rng_type *gsl_rng_random64_libc5;
+GSL_VAR const gsl_rng_type *gsl_rng_random8_bsd;
+GSL_VAR const gsl_rng_type *gsl_rng_random8_glibc2;
+GSL_VAR const gsl_rng_type *gsl_rng_random8_libc5;
+GSL_VAR const gsl_rng_type *gsl_rng_random_bsd;
+GSL_VAR const gsl_rng_type *gsl_rng_random_glibc2;
+GSL_VAR const gsl_rng_type *gsl_rng_random_libc5;
+GSL_VAR const gsl_rng_type *gsl_rng_randu;
+GSL_VAR const gsl_rng_type *gsl_rng_ranf;
+GSL_VAR const gsl_rng_type *gsl_rng_ranlux;
+GSL_VAR const gsl_rng_type *gsl_rng_ranlux389;
+GSL_VAR const gsl_rng_type *gsl_rng_ranlxd1;
+GSL_VAR const gsl_rng_type *gsl_rng_ranlxd2;
+GSL_VAR const gsl_rng_type *gsl_rng_ranlxs0;
+GSL_VAR const gsl_rng_type *gsl_rng_ranlxs1;
+GSL_VAR const gsl_rng_type *gsl_rng_ranlxs2;
+GSL_VAR const gsl_rng_type *gsl_rng_ranmar;
+GSL_VAR const gsl_rng_type *gsl_rng_slatec;
+GSL_VAR const gsl_rng_type *gsl_rng_taus;
+GSL_VAR const gsl_rng_type *gsl_rng_taus2;
+GSL_VAR const gsl_rng_type *gsl_rng_taus113;
+GSL_VAR const gsl_rng_type *gsl_rng_transputer;
+GSL_VAR const gsl_rng_type *gsl_rng_tt800;
+GSL_VAR const gsl_rng_type *gsl_rng_uni;
+GSL_VAR const gsl_rng_type *gsl_rng_uni32;
+GSL_VAR const gsl_rng_type *gsl_rng_vax;
+GSL_VAR const gsl_rng_type *gsl_rng_waterman14;
+GSL_VAR const gsl_rng_type *gsl_rng_zuf;
+
+const gsl_rng_type ** gsl_rng_types_setup(void);
+
+GSL_VAR const gsl_rng_type *gsl_rng_default;
+GSL_VAR unsigned long int gsl_rng_default_seed;
+
+gsl_rng *gsl_rng_alloc (const gsl_rng_type * T);
+int gsl_rng_memcpy (gsl_rng * dest, const gsl_rng * src);
+gsl_rng *gsl_rng_clone (const gsl_rng * r);
+
+void gsl_rng_free (gsl_rng * r);
+
+void gsl_rng_set (const gsl_rng * r, unsigned long int seed);
+unsigned long int gsl_rng_max (const gsl_rng * r);
+unsigned long int gsl_rng_min (const gsl_rng * r);
+const char *gsl_rng_name (const gsl_rng * r);
+
+int gsl_rng_fread (FILE * stream, gsl_rng * r);
+int gsl_rng_fwrite (FILE * stream, const gsl_rng * r);
+
+size_t gsl_rng_size (const gsl_rng * r);
+void * gsl_rng_state (const gsl_rng * r);
+
+void gsl_rng_print_state (const gsl_rng * r);
+
+const gsl_rng_type * gsl_rng_env_setup (void);
+
+INLINE_DECL unsigned long int gsl_rng_get (const gsl_rng * r);
+INLINE_DECL double gsl_rng_uniform (const gsl_rng * r);
+INLINE_DECL double gsl_rng_uniform_pos (const gsl_rng * r);
+INLINE_DECL unsigned long int gsl_rng_uniform_int (const gsl_rng * r, unsigned long int n);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN unsigned long int
+gsl_rng_get (const gsl_rng * r)
+{
+  return (r->type->get) (r->state);
+}
+
+INLINE_FUN double
+gsl_rng_uniform (const gsl_rng * r)
+{
+  return (r->type->get_double) (r->state);
+}
+
+INLINE_FUN double
+gsl_rng_uniform_pos (const gsl_rng * r)
+{
+  double x ;
+  do
+    {
+      x = (r->type->get_double) (r->state) ;
+    }
+  while (x == 0) ;
+
+  return x ;
+}
+
+/* Note: to avoid integer overflow in (range+1) we work with scale =
+   range/n = (max-min)/n rather than scale=(max-min+1)/n, this reduces
+   efficiency slightly but avoids having to check for the out of range
+   value.  Note that range is typically O(2^32) so the addition of 1
+   is negligible in most usage. */
+
+INLINE_FUN unsigned long int
+gsl_rng_uniform_int (const gsl_rng * r, unsigned long int n)
+{
+  unsigned long int offset = r->type->min;
+  unsigned long int range = r->type->max - offset;
+  unsigned long int scale;
+  unsigned long int k;
+
+  if (n > range || n == 0) 
+    {
+      GSL_ERROR_VAL ("invalid n, either 0 or exceeds maximum value of generator",
+                     GSL_EINVAL, 0) ;
+    }
+
+  scale = range / n;
+
+  do
+    {
+      k = (((r->type->get) (r->state)) - offset) / scale;
+    }
+  while (k >= n);
+
+  return k;
+}
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_RNG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_roots.h b/util/X86LINUX64/include/gsl/gsl_roots.h
new file mode 100644 (file)
index 0000000..46e4587
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_roots.h
@@ -0,0 +1,127 @@
+/* roots/gsl_roots.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Reid Priedhorsky, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_ROOTS_H__
+#define __GSL_ROOTS_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_math.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct
+  {
+    const char *name;
+    size_t size;
+    int (*set) (void *state, gsl_function * f, double * root, double x_lower, double x_upper);
+    int (*iterate) (void *state, gsl_function * f, double * root, double * x_lower, double * x_upper);
+  }
+gsl_root_fsolver_type;
+
+typedef struct
+  {
+    const gsl_root_fsolver_type * type;
+    gsl_function * function ;
+    double root ;
+    double x_lower;
+    double x_upper;
+    void *state;
+  }
+gsl_root_fsolver;
+
+typedef struct
+  {
+    const char *name;
+    size_t size;
+    int (*set) (void *state, gsl_function_fdf * f, double * root);
+    int (*iterate) (void *state, gsl_function_fdf * f, double * root);
+  }
+gsl_root_fdfsolver_type;
+
+typedef struct
+  {
+    const gsl_root_fdfsolver_type * type;
+    gsl_function_fdf * fdf ;
+    double root ;
+    void *state;
+  }
+gsl_root_fdfsolver;
+
+gsl_root_fsolver *
+gsl_root_fsolver_alloc (const gsl_root_fsolver_type * T);
+void gsl_root_fsolver_free (gsl_root_fsolver * s);
+
+int gsl_root_fsolver_set (gsl_root_fsolver * s,
+                          gsl_function * f, 
+                          double x_lower, double x_upper);
+
+int gsl_root_fsolver_iterate (gsl_root_fsolver * s);
+
+const char * gsl_root_fsolver_name (const gsl_root_fsolver * s);
+double gsl_root_fsolver_root (const gsl_root_fsolver * s);
+double gsl_root_fsolver_x_lower (const gsl_root_fsolver * s);
+double gsl_root_fsolver_x_upper (const gsl_root_fsolver * s);
+
+
+gsl_root_fdfsolver *
+gsl_root_fdfsolver_alloc (const gsl_root_fdfsolver_type * T);
+
+int
+gsl_root_fdfsolver_set (gsl_root_fdfsolver * s, 
+                         gsl_function_fdf * fdf, double root);
+
+int
+gsl_root_fdfsolver_iterate (gsl_root_fdfsolver * s);
+
+void
+gsl_root_fdfsolver_free (gsl_root_fdfsolver * s);
+
+const char * gsl_root_fdfsolver_name (const gsl_root_fdfsolver * s);
+double gsl_root_fdfsolver_root (const gsl_root_fdfsolver * s);
+
+int
+gsl_root_test_interval (double x_lower, double x_upper, double epsabs, double epsrel);
+
+int
+gsl_root_test_residual (double f, double epsabs);
+
+int
+gsl_root_test_delta (double x1, double x0, double epsabs, double epsrel);
+
+GSL_VAR const gsl_root_fsolver_type  * gsl_root_fsolver_bisection;
+GSL_VAR const gsl_root_fsolver_type  * gsl_root_fsolver_brent;
+GSL_VAR const gsl_root_fsolver_type  * gsl_root_fsolver_falsepos;
+GSL_VAR const gsl_root_fdfsolver_type  * gsl_root_fdfsolver_newton;
+GSL_VAR const gsl_root_fdfsolver_type  * gsl_root_fdfsolver_secant;
+GSL_VAR const gsl_root_fdfsolver_type  * gsl_root_fdfsolver_steffenson;
+
+__END_DECLS
+
+#endif /* __GSL_ROOTS_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf.h b/util/X86LINUX64/include/gsl/gsl_sf.h
new file mode 100644 (file)
index 0000000..643cf34
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf.h
@@ -0,0 +1,39 @@
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_H__
+#define __GSL_SF_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#include <gsl/gsl_sf_airy.h>
+#include <gsl/gsl_sf_bessel.h>
+#include <gsl/gsl_sf_clausen.h>
+#include <gsl/gsl_sf_coupling.h>
+#include <gsl/gsl_sf_coulomb.h>
+#include <gsl/gsl_sf_dawson.h>
+#include <gsl/gsl_sf_debye.h>
+#include <gsl/gsl_sf_dilog.h>
+#include <gsl/gsl_sf_elementary.h>
+#include <gsl/gsl_sf_ellint.h>
+#include <gsl/gsl_sf_elljac.h>
+#include <gsl/gsl_sf_erf.h>
+#include <gsl/gsl_sf_exp.h>
+#include <gsl/gsl_sf_expint.h>
+#include <gsl/gsl_sf_fermi_dirac.h>
+#include <gsl/gsl_sf_gamma.h>
+#include <gsl/gsl_sf_gegenbauer.h>
+#include <gsl/gsl_sf_hyperg.h>
+#include <gsl/gsl_sf_laguerre.h>
+#include <gsl/gsl_sf_lambert.h>
+#include <gsl/gsl_sf_legendre.h>
+#include <gsl/gsl_sf_log.h>
+#include <gsl/gsl_sf_mathieu.h>
+#include <gsl/gsl_sf_pow_int.h>
+#include <gsl/gsl_sf_psi.h>
+#include <gsl/gsl_sf_synchrotron.h>
+#include <gsl/gsl_sf_transport.h>
+#include <gsl/gsl_sf_trig.h>
+#include <gsl/gsl_sf_zeta.h>
+
+
+#endif /* __GSL_SF_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_airy.h b/util/X86LINUX64/include/gsl/gsl_sf_airy.h
new file mode 100644 (file)
index 0000000..7033383
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_airy.h
@@ -0,0 +1,139 @@
+/* specfunc/gsl_sf_airy.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_AIRY_H__
+#define __GSL_SF_AIRY_H__
+
+#include <gsl/gsl_mode.h>
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Airy function Ai(x)
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_airy_Ai_e(const double x, const gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_airy_Ai(const double x, gsl_mode_t mode);
+
+
+/* Airy function Bi(x)
+ *
+ * exceptions: GSL_EOVRFLW
+ */
+int gsl_sf_airy_Bi_e(const double x, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_airy_Bi(const double x, gsl_mode_t mode);
+
+
+/* scaled Ai(x):
+ *                     Ai(x)   x < 0
+ *   exp(+2/3 x^{3/2}) Ai(x)   x > 0
+ *
+ * exceptions: none
+ */
+int gsl_sf_airy_Ai_scaled_e(const double x, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_airy_Ai_scaled(const double x, gsl_mode_t mode);
+
+
+/* scaled Bi(x):
+ *                     Bi(x)   x < 0
+ *   exp(-2/3 x^{3/2}) Bi(x)   x > 0
+ *
+ * exceptions: none
+ */
+int gsl_sf_airy_Bi_scaled_e(const double x, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_airy_Bi_scaled(const double x, gsl_mode_t mode);
+
+
+/* derivative Ai'(x)
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_airy_Ai_deriv_e(const double x, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_airy_Ai_deriv(const double x, gsl_mode_t mode);
+
+
+/* derivative Bi'(x)
+ *
+ * exceptions: GSL_EOVRFLW
+ */
+int gsl_sf_airy_Bi_deriv_e(const double x, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_airy_Bi_deriv(const double x, gsl_mode_t mode);
+
+
+/* scaled derivative Ai'(x):
+ *                     Ai'(x)   x < 0
+ *   exp(+2/3 x^{3/2}) Ai'(x)   x > 0
+ *
+ * exceptions: none
+ */
+int gsl_sf_airy_Ai_deriv_scaled_e(const double x, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_airy_Ai_deriv_scaled(const double x, gsl_mode_t mode);
+
+
+/* scaled derivative:
+ *                     Bi'(x)   x < 0
+ *   exp(-2/3 x^{3/2}) Bi'(x)   x > 0
+ *
+ * exceptions: none
+ */
+int gsl_sf_airy_Bi_deriv_scaled_e(const double x, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_airy_Bi_deriv_scaled(const double x, gsl_mode_t mode);
+
+
+/* Zeros of Ai(x)
+ */
+int gsl_sf_airy_zero_Ai_e(unsigned int s, gsl_sf_result * result);
+double gsl_sf_airy_zero_Ai(unsigned int s);
+
+
+/* Zeros of Bi(x)
+ */
+int gsl_sf_airy_zero_Bi_e(unsigned int s, gsl_sf_result * result);
+double gsl_sf_airy_zero_Bi(unsigned int s);
+
+
+/* Zeros of Ai'(x)
+ */
+int gsl_sf_airy_zero_Ai_deriv_e(unsigned int s, gsl_sf_result * result);
+double gsl_sf_airy_zero_Ai_deriv(unsigned int s);
+
+
+/* Zeros of Bi'(x)
+ */
+int gsl_sf_airy_zero_Bi_deriv_e(unsigned int s, gsl_sf_result * result);
+double gsl_sf_airy_zero_Bi_deriv(unsigned int s);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_AIRY_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_bessel.h b/util/X86LINUX64/include/gsl/gsl_sf_bessel.h
new file mode 100644 (file)
index 0000000..d72957a
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_bessel.h
@@ -0,0 +1,549 @@
+/* specfunc/gsl_sf_bessel.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_BESSEL_H__
+#define __GSL_SF_BESSEL_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_mode.h>
+#include <gsl/gsl_precision.h>
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Regular Bessel Function J_0(x)
+ *
+ * exceptions: none
+ */
+int gsl_sf_bessel_J0_e(const double x,  gsl_sf_result * result);
+double gsl_sf_bessel_J0(const double x);
+
+
+/* Regular Bessel Function J_1(x)
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_J1_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_J1(const double x);
+
+
+/* Regular Bessel Function J_n(x)
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_Jn_e(int n, double x, gsl_sf_result * result);
+double gsl_sf_bessel_Jn(const int n, const double x);
+
+
+/* Regular Bessel Function J_n(x),  nmin <= n <= nmax
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_Jn_array(int nmin, int nmax, double x, double * result_array);
+
+
+/* Irregular Bessel function Y_0(x)
+ *
+ * x > 0.0
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_Y0_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_Y0(const double x);
+
+
+/* Irregular Bessel function Y_1(x)
+ *
+ * x > 0.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_Y1_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_Y1(const double x);
+
+
+/* Irregular Bessel function Y_n(x)
+ *
+ * x > 0.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_Yn_e(int n,const double x, gsl_sf_result * result);
+double gsl_sf_bessel_Yn(const int n,const double x);
+
+
+/* Irregular Bessel function Y_n(x), nmin <= n <= nmax
+ *
+ * x > 0.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_Yn_array(const int nmin, const int nmax, const double x, double * result_array);
+
+
+/* Regular modified Bessel function I_0(x)
+ *
+ * exceptions: GSL_EOVRFLW
+ */
+int gsl_sf_bessel_I0_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_I0(const double x);
+
+
+/* Regular modified Bessel function I_1(x)
+ *
+ * exceptions: GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_I1_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_I1(const double x);
+
+
+/* Regular modified Bessel function I_n(x)
+ *
+ * exceptions: GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_In_e(const int n, const double x, gsl_sf_result * result);
+double gsl_sf_bessel_In(const int n, const double x);
+
+
+/* Regular modified Bessel function  I_n(x) for n=nmin,...,nmax
+ *
+ * nmin >=0, nmax >= nmin
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_In_array(const int nmin, const int nmax, const double x, double * result_array);
+
+
+/* Scaled regular modified Bessel function
+ *  exp(-|x|) I_0(x)
+ *
+ * exceptions: none
+ */
+int gsl_sf_bessel_I0_scaled_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_I0_scaled(const double x);
+
+
+/* Scaled regular modified Bessel function
+ *  exp(-|x|) I_1(x)
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_I1_scaled_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_I1_scaled(const double x);
+
+
+/* Scaled regular modified Bessel function
+ *  exp(-|x|) I_n(x)
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_In_scaled_e(int n, const double x, gsl_sf_result * result);
+double gsl_sf_bessel_In_scaled(const int n, const double x);
+
+
+/* Scaled regular modified Bessel function
+ *  exp(-|x|) I_n(x)  for n=nmin,...,nmax
+ *
+ * nmin >=0, nmax >= nmin
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_In_scaled_array(const int nmin, const int nmax, const double x, double * result_array);
+
+
+/* Irregular modified Bessel function K_0(x)
+ *
+ * x > 0.0
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_K0_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_K0(const double x);
+
+
+/* Irregular modified Bessel function K_1(x)
+ *
+ * x > 0.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_K1_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_K1(const double x);
+
+
+/* Irregular modified Bessel function K_n(x)
+ *
+ * x > 0.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_Kn_e(const int n, const double x, gsl_sf_result * result);
+double gsl_sf_bessel_Kn(const int n, const double x);
+
+
+/* Irregular modified Bessel function  K_n(x)  for n=nmin,...,nmax
+ *
+ * x > 0.0, nmin >=0, nmax >= nmin
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_Kn_array(const int nmin, const int nmax, const double x, double * result_array);
+
+
+/* Scaled irregular modified Bessel function
+ *  exp(x) K_0(x)
+ *
+ * x > 0.0
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_bessel_K0_scaled_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_K0_scaled(const double x);
+
+
+/* Scaled irregular modified Bessel function
+ *  exp(x) K_1(x)
+ *
+ * x > 0.0
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_K1_scaled_e(const double x, gsl_sf_result * result); 
+double gsl_sf_bessel_K1_scaled(const double x);
+
+
+/* Scaled irregular modified Bessel function
+ *  exp(x) K_n(x)
+ *
+ * x > 0.0
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_Kn_scaled_e(int n, const double x, gsl_sf_result * result);
+double gsl_sf_bessel_Kn_scaled(const int n, const double x);
+
+
+/* Scaled irregular modified Bessel function  exp(x) K_n(x)  for n=nmin,...,nmax
+ *
+ * x > 0.0, nmin >=0, nmax >= nmin
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_Kn_scaled_array(const int nmin, const int nmax, const double x, double * result_array);
+
+
+/* Regular spherical Bessel function j_0(x) = sin(x)/x
+ *
+ * exceptions: none
+ */
+int gsl_sf_bessel_j0_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_j0(const double x);
+
+
+/* Regular spherical Bessel function j_1(x) = (sin(x)/x - cos(x))/x
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_j1_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_j1(const double x);
+
+
+/* Regular spherical Bessel function j_2(x) = ((3/x^2 - 1)sin(x) - 3cos(x)/x)/x
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_j2_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_j2(const double x);
+
+
+/* Regular spherical Bessel function j_l(x)
+ *
+ * l >= 0, x >= 0.0
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_jl_e(const int l, const double x, gsl_sf_result * result);
+double gsl_sf_bessel_jl(const int l, const double x);
+
+
+/* Regular spherical Bessel function j_l(x) for l=0,1,...,lmax
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_jl_array(const int lmax, const double x, double * result_array);
+
+
+/* Regular spherical Bessel function j_l(x) for l=0,1,...,lmax
+ * Uses Steed's method.
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_jl_steed_array(const int lmax, const double x, double * jl_x_array);
+
+
+/* Irregular spherical Bessel function y_0(x)
+ *
+ * exceptions: none
+ */
+int gsl_sf_bessel_y0_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_y0(const double x);
+
+
+/* Irregular spherical Bessel function y_1(x)
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_y1_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_y1(const double x);
+
+
+/* Irregular spherical Bessel function y_2(x)
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_y2_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_y2(const double x);
+
+
+/* Irregular spherical Bessel function y_l(x)
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_yl_e(int l, const double x, gsl_sf_result * result);
+double gsl_sf_bessel_yl(const int l, const double x);
+
+
+/* Irregular spherical Bessel function y_l(x) for l=0,1,...,lmax
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_yl_array(const int lmax, const double x, double * result_array);
+
+
+/* Regular scaled modified spherical Bessel function
+ *
+ * Exp[-|x|] i_0(x)
+ *
+ * exceptions: none
+ */
+int gsl_sf_bessel_i0_scaled_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_i0_scaled(const double x);
+
+
+/* Regular scaled modified spherical Bessel function
+ *
+ * Exp[-|x|] i_1(x)
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_i1_scaled_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_i1_scaled(const double x);
+
+
+/* Regular scaled modified spherical Bessel function
+ *
+ * Exp[-|x|] i_2(x)
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_i2_scaled_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_i2_scaled(const double x);
+
+
+/* Regular scaled modified spherical Bessel functions
+ *
+ * Exp[-|x|] i_l(x)
+ *
+ * i_l(x) = Sqrt[Pi/(2x)] BesselI[l+1/2,x]
+ *
+ * l >= 0
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_il_scaled_e(const int l, double x, gsl_sf_result * result);
+double gsl_sf_bessel_il_scaled(const int l, const double x);
+
+
+/* Regular scaled modified spherical Bessel functions
+ *
+ * Exp[-|x|] i_l(x)
+ * for l=0,1,...,lmax
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_il_scaled_array(const int lmax, const double x, double * result_array);
+
+
+/* Irregular scaled modified spherical Bessel function
+ * Exp[x] k_0(x)
+ *
+ * x > 0.0
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_k0_scaled_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_k0_scaled(const double x);
+
+
+/* Irregular modified spherical Bessel function
+ * Exp[x] k_1(x)
+ *
+ * x > 0.0
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW, GSL_EOVRFLW
+ */
+int gsl_sf_bessel_k1_scaled_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_k1_scaled(const double x);
+
+
+/* Irregular modified spherical Bessel function
+ * Exp[x] k_2(x)
+ *
+ * x > 0.0
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW, GSL_EOVRFLW
+ */
+int gsl_sf_bessel_k2_scaled_e(const double x, gsl_sf_result * result);
+double gsl_sf_bessel_k2_scaled(const double x);
+
+
+/* Irregular modified spherical Bessel function
+ * Exp[x] k_l[x]
+ *
+ * k_l(x) = Sqrt[Pi/(2x)] BesselK[l+1/2,x]
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_kl_scaled_e(int l, const double x, gsl_sf_result * result);
+double gsl_sf_bessel_kl_scaled(const int l, const double x);
+
+
+/* Irregular scaled modified spherical Bessel function
+ * Exp[x] k_l(x)
+ *
+ * for l=0,1,...,lmax
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_kl_scaled_array(const int lmax, const double x, double * result_array);
+
+
+/* Regular cylindrical Bessel function J_nu(x)
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_Jnu_e(const double nu, const double x, gsl_sf_result * result);
+double gsl_sf_bessel_Jnu(const double nu, const double x);
+
+
+/* Irregular cylindrical Bessel function Y_nu(x)
+ *
+ * exceptions:  
+ */
+int gsl_sf_bessel_Ynu_e(double nu, double x, gsl_sf_result * result);
+double gsl_sf_bessel_Ynu(const double nu, const double x);
+
+
+/* Regular cylindrical Bessel function J_nu(x)
+ * evaluated at a series of x values. The array
+ * contains the x values. They are assumed to be
+ * strictly ordered and positive. The array is
+ * over-written with the values of J_nu(x_i).
+ *
+ * exceptions: GSL_EDOM, GSL_EINVAL
+ */
+int gsl_sf_bessel_sequence_Jnu_e(double nu, gsl_mode_t mode, size_t size, double * v);
+
+
+/* Scaled modified cylindrical Bessel functions
+ *
+ * Exp[-|x|] BesselI[nu, x]
+ * x >= 0, nu >= 0
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_bessel_Inu_scaled_e(double nu, double x, gsl_sf_result * result);
+double gsl_sf_bessel_Inu_scaled(double nu, double x);
+
+
+/* Modified cylindrical Bessel functions
+ *
+ * BesselI[nu, x]
+ * x >= 0, nu >= 0
+ *
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_bessel_Inu_e(double nu, double x, gsl_sf_result * result);
+double gsl_sf_bessel_Inu(double nu, double x);
+
+
+/* Scaled modified cylindrical Bessel functions
+ *
+ * Exp[+|x|] BesselK[nu, x]
+ * x > 0, nu >= 0
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_bessel_Knu_scaled_e(const double nu, const double x, gsl_sf_result * result);
+double gsl_sf_bessel_Knu_scaled(const double nu, const double x);
+
+int gsl_sf_bessel_Knu_scaled_e10_e(const double nu, const double x, gsl_sf_result_e10 * result);
+
+/* Modified cylindrical Bessel functions
+ *
+ * BesselK[nu, x]
+ * x > 0, nu >= 0
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_bessel_Knu_e(const double nu, const double x, gsl_sf_result * result);
+double gsl_sf_bessel_Knu(const double nu, const double x);
+
+
+/* Logarithm of modified cylindrical Bessel functions.
+ *
+ * Log[BesselK[nu, x]]
+ * x > 0, nu >= 0
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_bessel_lnKnu_e(const double nu, const double x, gsl_sf_result * result);
+double gsl_sf_bessel_lnKnu(const double nu, const double x);
+
+
+/* s'th positive zero of the Bessel function J_0(x).
+ *
+ * exceptions: 
+ */
+int gsl_sf_bessel_zero_J0_e(unsigned int s, gsl_sf_result * result);
+double gsl_sf_bessel_zero_J0(unsigned int s);
+
+
+/* s'th positive zero of the Bessel function J_1(x).
+ *
+ * exceptions: 
+ */
+int gsl_sf_bessel_zero_J1_e(unsigned int s, gsl_sf_result * result);
+double gsl_sf_bessel_zero_J1(unsigned int s);
+
+
+/* s'th positive zero of the Bessel function J_nu(x).
+ *
+ * exceptions: 
+ */
+int gsl_sf_bessel_zero_Jnu_e(double nu, unsigned int s, gsl_sf_result * result);
+double gsl_sf_bessel_zero_Jnu(double nu, unsigned int s);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_BESSEL_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_clausen.h b/util/X86LINUX64/include/gsl/gsl_sf_clausen.h
new file mode 100644 (file)
index 0000000..8e4ccd2
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_clausen.h
@@ -0,0 +1,52 @@
+/* specfunc/gsl_sf_clausen.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_CLAUSEN_H__
+#define __GSL_SF_CLAUSEN_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Calculate the Clausen integral:
+ *   Cl_2(x) := Integrate[-Log[2 Sin[t/2]], {t,0,x}]
+ *
+ * Relation to dilogarithm:
+ *   Cl_2(theta) = Im[ Li_2(e^(i theta)) ]
+ */
+int gsl_sf_clausen_e(double x, gsl_sf_result * result);
+double gsl_sf_clausen(const double x);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_CLAUSEN_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_coulomb.h b/util/X86LINUX64/include/gsl/gsl_sf_coulomb.h
new file mode 100644 (file)
index 0000000..764a571
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_coulomb.h
@@ -0,0 +1,128 @@
+/* specfunc/gsl_sf_coulomb.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_COULOMB_H__
+#define __GSL_SF_COULOMB_H__
+
+#include <gsl/gsl_mode.h>
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Normalized hydrogenic bound states, radial dependence. */
+
+/* R_1 := 2Z sqrt(Z) exp(-Z r)
+ */
+int gsl_sf_hydrogenicR_1_e(const double Z, const double r, gsl_sf_result * result);
+double gsl_sf_hydrogenicR_1(const double Z, const double r);
+
+/* R_n := norm exp(-Z r/n) (2Z/n)^l Laguerre[n-l-1, 2l+1, 2Z/n r]
+ *
+ * normalization such that psi(n,l,r) = R_n Y_{lm}
+ */
+int gsl_sf_hydrogenicR_e(const int n, const int l, const double Z, const double r, gsl_sf_result * result);
+double gsl_sf_hydrogenicR(const int n, const int l, const double Z, const double r);
+
+
+/* Coulomb wave functions F_{lam_F}(eta,x), G_{lam_G}(eta,x)
+ * and their derivatives; lam_G := lam_F - k_lam_G
+ *
+ * lam_F, lam_G > -0.5
+ * x > 0.0
+ *
+ * Conventions of Abramowitz+Stegun.
+ *
+ * Because there can be a large dynamic range of values,
+ * overflows are handled gracefully. If an overflow occurs,
+ * GSL_EOVRFLW is signalled and exponent(s) are returned
+ * through exp_F, exp_G. These are such that
+ *
+ *   F_L(eta,x)  =  fc[k_L] * exp(exp_F)
+ *   G_L(eta,x)  =  gc[k_L] * exp(exp_G)
+ *   F_L'(eta,x) = fcp[k_L] * exp(exp_F)
+ *   G_L'(eta,x) = gcp[k_L] * exp(exp_G)
+ */
+int
+gsl_sf_coulomb_wave_FG_e(const double eta, const double x,
+                            const double lam_F,
+                            const int  k_lam_G,
+                            gsl_sf_result * F, gsl_sf_result * Fp,
+                            gsl_sf_result * G, gsl_sf_result * Gp,
+                            double * exp_F, double * exp_G);
+
+
+/* F_L(eta,x) as array */
+int gsl_sf_coulomb_wave_F_array(
+  double lam_min, int kmax,
+  double eta, double x,
+  double * fc_array,
+  double * F_exponent
+  );
+
+/* F_L(eta,x), G_L(eta,x) as arrays */
+int gsl_sf_coulomb_wave_FG_array(double lam_min, int kmax,
+                                double eta, double x,
+                                double * fc_array, double * gc_array,
+                                double * F_exponent,
+                                double * G_exponent
+                                );
+
+/* F_L(eta,x), G_L(eta,x), F'_L(eta,x), G'_L(eta,x) as arrays */
+int gsl_sf_coulomb_wave_FGp_array(double lam_min, int kmax,
+                                double eta, double x,
+                                double * fc_array, double * fcp_array,
+                                double * gc_array, double * gcp_array,
+                                double * F_exponent,
+                                double * G_exponent
+                                );
+
+/* Coulomb wave function divided by the argument,
+ * F(eta, x)/x. This is the function which reduces to
+ * spherical Bessel functions in the limit eta->0.
+ */
+int gsl_sf_coulomb_wave_sphF_array(double lam_min, int kmax,
+                                        double eta, double x,
+                                        double * fc_array,
+                                        double * F_exponent
+                                        );
+
+
+/* Coulomb wave function normalization constant.
+ * [Abramowitz+Stegun 14.1.8, 14.1.9]
+ */
+int gsl_sf_coulomb_CL_e(double L, double eta, gsl_sf_result * result);
+int gsl_sf_coulomb_CL_array(double Lmin, int kmax, double eta, double * cl);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_COULOMB_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_coupling.h b/util/X86LINUX64/include/gsl/gsl_sf_coupling.h
new file mode 100644 (file)
index 0000000..c46b9f5
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_coupling.h
@@ -0,0 +1,125 @@
+/* specfunc/gsl_sf_coupling.h
+ * 
+ * Copyright (C) 1996,1997,1998,1999,2000,2001,2002 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_COUPLING_H__
+#define __GSL_SF_COUPLING_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* 3j Symbols:  / ja jb jc \
+ *              \ ma mb mc /
+ *
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_coupling_3j_e(int two_ja, int two_jb, int two_jc,
+                            int two_ma, int two_mb, int two_mc,
+                            gsl_sf_result * result
+                            );
+double gsl_sf_coupling_3j(int two_ja, int two_jb, int two_jc,
+                          int two_ma, int two_mb, int two_mc
+                          );
+
+
+/* 6j Symbols:  / ja jb jc \
+ *              \ jd je jf /
+ *
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_coupling_6j_e(int two_ja, int two_jb, int two_jc,
+                         int two_jd, int two_je, int two_jf,
+                         gsl_sf_result * result
+                         );
+double gsl_sf_coupling_6j(int two_ja, int two_jb, int two_jc,
+                          int two_jd, int two_je, int two_jf
+                          );
+
+/* Racah W coefficients:
+ *
+ *   W(a b c d; e f) = (-1)^{a+b+c+d} / a b e \
+ *                                    \ d c f /
+ *
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_coupling_RacahW_e(int two_ja, int two_jb, int two_jc,
+                             int two_jd, int two_je, int two_jf,
+                             gsl_sf_result * result
+                             );
+double gsl_sf_coupling_RacahW(int two_ja, int two_jb, int two_jc,
+                              int two_jd, int two_je, int two_jf
+                              );
+
+
+/* 9j Symbols:  / ja jb jc \
+ *              | jd je jf |
+ *              \ jg jh ji /
+ *
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_coupling_9j_e(int two_ja, int two_jb, int two_jc,
+                         int two_jd, int two_je, int two_jf,
+                         int two_jg, int two_jh, int two_ji,
+                         gsl_sf_result * result
+                         );
+double gsl_sf_coupling_9j(int two_ja, int two_jb, int two_jc,
+                          int two_jd, int two_je, int two_jf,
+                          int two_jg, int two_jh, int two_ji
+                          );
+
+
+/* INCORRECT version of 6j Symbols:
+ * This function actually calculates
+ *              / ja jb je \
+ *              \ jd jc jf /
+ * It represents the original implementation,
+ * which had the above permutation of the
+ * arguments. This was wrong and confusing,
+ * and I had to fix it. Sorry for the trouble.
+ * [GJ] Tue Nov 26 12:53:39 MST 2002
+ *
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+#ifndef GSL_DISABLE_DEPRECATED
+int gsl_sf_coupling_6j_INCORRECT_e(int two_ja, int two_jb, int two_jc,
+                                   int two_jd, int two_je, int two_jf,
+                                   gsl_sf_result * result
+                                   );
+double gsl_sf_coupling_6j_INCORRECT(int two_ja, int two_jb, int two_jc,
+                                    int two_jd, int two_je, int two_jf
+                                    );
+#endif /* !GSL_DISABLE_DEPRECATED */
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_COUPLING_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_dawson.h b/util/X86LINUX64/include/gsl/gsl_sf_dawson.h
new file mode 100644 (file)
index 0000000..7c11f9f
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_dawson.h
@@ -0,0 +1,52 @@
+/* specfunc/gsl_sf_dawson.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_DAWSON_H__
+#define __GSL_SF_DAWSON_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Dawson's integral:
+ *
+ *   Exp[-x^2] Integral[ Exp[t^2], {t,0,x}]
+ *
+ * exceptions: GSL_EUNDRFLW;
+ */
+int     gsl_sf_dawson_e(double x, gsl_sf_result * result);
+double     gsl_sf_dawson(double x);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_DAWSON_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_debye.h b/util/X86LINUX64/include/gsl/gsl_sf_debye.h
new file mode 100644 (file)
index 0000000..bc732b1
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_debye.h
@@ -0,0 +1,91 @@
+/* specfunc/gsl_sf_debye.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+/* augmented by D_5(x) and D_6(x) by Richard J. Mathar, 2005-11-08 */
+
+#ifndef __GSL_SF_DEBYE_H__
+#define __GSL_SF_DEBYE_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* D_n(x) := n/x^n Integrate[t^n/(e^t - 1), {t,0,x}] */
+
+/* D_1(x)
+ *
+ * exceptions: GSL_EDOM
+ */
+int     gsl_sf_debye_1_e(const double x, gsl_sf_result * result);
+double     gsl_sf_debye_1(const double x);
+
+
+/* D_2(x)
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int     gsl_sf_debye_2_e(const double x, gsl_sf_result * result);
+double     gsl_sf_debye_2(const double x);
+
+
+/* D_3(x)
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int     gsl_sf_debye_3_e(const double x, gsl_sf_result * result);
+double     gsl_sf_debye_3(const double x);
+
+
+/* D_4(x)
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int     gsl_sf_debye_4_e(const double x, gsl_sf_result * result);
+double     gsl_sf_debye_4(const double x);
+
+/* D_5(x)
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int     gsl_sf_debye_5_e(const double x, gsl_sf_result * result);
+double     gsl_sf_debye_5(const double x);
+
+/* D_6(x)
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int     gsl_sf_debye_6_e(const double x, gsl_sf_result * result);
+double     gsl_sf_debye_6(const double x);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_DEBYE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_dilog.h b/util/X86LINUX64/include/gsl/gsl_sf_dilog.h
new file mode 100644 (file)
index 0000000..79b2b76
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_dilog.h
@@ -0,0 +1,130 @@
+/* specfunc/gsl_sf_dilog.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2004 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_DILOG_H__
+#define __GSL_SF_DILOG_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Real part of DiLogarithm(x), for real argument.
+ * In Lewin's notation, this is Li_2(x).
+ *
+ *   Li_2(x) = - Re[ Integrate[ Log[1-s] / s, {s, 0, x}] ]
+ *
+ * The function in the complex plane has a branch point
+ * at z = 1; we place the cut in the conventional way,
+ * on [1, +infty). This means that the value for real x > 1
+ * is a matter of definition; however, this choice does not
+ * affect the real part and so is not relevant to the
+ * interpretation of this implemented function.
+ */
+int     gsl_sf_dilog_e(const double x, gsl_sf_result * result);
+double  gsl_sf_dilog(const double x);
+
+
+/* DiLogarithm(z), for complex argument z = x + i y.
+ * Computes the principal branch.
+ *
+ * Recall that the branch cut is on the real axis with x > 1.
+ * The imaginary part of the computed value on the cut is given
+ * by -Pi*log(x), which is the limiting value taken approaching
+ * from y < 0. This is a conventional choice, though there is no
+ * true standardized choice.
+ *
+ * Note that there is no canonical way to lift the defining
+ * contour to the full Riemann surface because of the appearance
+ * of a "hidden branch point" at z = 0 on non-principal sheets.
+ * Experts will know the simple algebraic prescription for
+ * obtaining the sheet they want; non-experts will not want
+ * to know anything about it. This is why GSL chooses to compute
+ * only on the principal branch.
+ */
+int
+gsl_sf_complex_dilog_xy_e(
+  const double x,
+  const double y,
+  gsl_sf_result * result_re,
+  gsl_sf_result * result_im
+  );
+
+
+
+/* DiLogarithm(z), for complex argument z = r Exp[i theta].
+ * Computes the principal branch, thereby assuming an
+ * implicit reduction of theta to the range (-2 pi, 2 pi).
+ *
+ * If theta is identically zero, the imaginary part is computed
+ * as if approaching from y > 0. For other values of theta no
+ * special consideration is given, since it is assumed that
+ * no other machine representations of multiples of pi will
+ * produce y = 0 precisely. This assumption depends on some
+ * subtle properties of the machine arithmetic, such as
+ * correct rounding and monotonicity of the underlying
+ * implementation of sin() and cos().
+ *
+ * This function is ok, but the interface is confusing since
+ * it makes it appear that the branch structure is resolved.
+ * Furthermore the handling of values close to the branch
+ * cut is subtle. Perhap this interface should be deprecated.
+ */
+int
+gsl_sf_complex_dilog_e(
+  const double r,
+  const double theta,
+  gsl_sf_result * result_re,
+  gsl_sf_result * result_im
+  );
+
+
+
+/* Spence integral; spence(s) := Li_2(1-s)
+ *
+ * This function has a branch point at 0; we place the
+ * cut on (-infty,0). Because of our choice for the value
+ * of Li_2(z) on the cut, spence(s) is continuous as
+ * s approaches the cut from above. In other words,
+ * we define spence(x) = spence(x + i 0+).
+ */
+int
+gsl_sf_complex_spence_xy_e(
+  const double x,
+  const double y,
+  gsl_sf_result * real_sp,
+  gsl_sf_result * imag_sp
+  );
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_DILOG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_elementary.h b/util/X86LINUX64/include/gsl/gsl_sf_elementary.h
new file mode 100644 (file)
index 0000000..467bfda
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_elementary.h
@@ -0,0 +1,57 @@
+/* specfunc/gsl_sf_elementary.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+/* Miscellaneous elementary functions and operations.
+ */
+#ifndef __GSL_SF_ELEMENTARY_H__
+#define __GSL_SF_ELEMENTARY_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Multiplication.
+ *
+ * exceptions: GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_multiply_e(const double x, const double y, gsl_sf_result * result);
+double gsl_sf_multiply(const double x, const double y);
+
+
+/* Multiplication of quantities with associated errors.
+ */
+int gsl_sf_multiply_err_e(const double x, const double dx, const double y, const double dy, gsl_sf_result * result);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_ELEMENTARY_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_ellint.h b/util/X86LINUX64/include/gsl/gsl_sf_ellint.h
new file mode 100644 (file)
index 0000000..7d92a1e
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_ellint.h
@@ -0,0 +1,112 @@
+/* specfunc/gsl_sf_ellint.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author: G. Jungman */
+
+#ifndef __GSL_SF_ELLINT_H__
+#define __GSL_SF_ELLINT_H__
+
+#include <gsl/gsl_mode.h>
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Legendre form of complete elliptic integrals
+ *
+ * K(k) = Integral[1/Sqrt[1 - k^2 Sin[t]^2], {t, 0, Pi/2}]
+ * E(k) = Integral[  Sqrt[1 - k^2 Sin[t]^2], {t, 0, Pi/2}]
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_ellint_Kcomp_e(double k, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_ellint_Kcomp(double k, gsl_mode_t mode);
+
+int gsl_sf_ellint_Ecomp_e(double k, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_ellint_Ecomp(double k, gsl_mode_t mode);
+
+int gsl_sf_ellint_Pcomp_e(double k, double n, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_ellint_Pcomp(double k, double n, gsl_mode_t mode);
+
+int gsl_sf_ellint_Dcomp_e(double k, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_ellint_Dcomp(double k, gsl_mode_t mode);
+
+
+/* Legendre form of incomplete elliptic integrals
+ *
+ * F(phi,k)   = Integral[1/Sqrt[1 - k^2 Sin[t]^2], {t, 0, phi}]
+ * E(phi,k)   = Integral[  Sqrt[1 - k^2 Sin[t]^2], {t, 0, phi}]
+ * P(phi,k,n) = Integral[(1 + n Sin[t]^2)^(-1)/Sqrt[1 - k^2 Sin[t]^2], {t, 0, phi}]
+ * D(phi,k,n) = R_D(1-Sin[phi]^2, 1-k^2 Sin[phi]^2, 1.0)
+ *
+ * F: [Carlson, Numerische Mathematik 33 (1979) 1, (4.1)]
+ * E: [Carlson, ", (4.2)]
+ * P: [Carlson, ", (4.3)]
+ * D: [Carlson, ", (4.4)]
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_ellint_F_e(double phi, double k, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_ellint_F(double phi, double k, gsl_mode_t mode);
+
+int gsl_sf_ellint_E_e(double phi, double k, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_ellint_E(double phi, double k, gsl_mode_t mode);
+
+int gsl_sf_ellint_P_e(double phi, double k, double n, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_ellint_P(double phi, double k, double n, gsl_mode_t mode);
+
+int gsl_sf_ellint_D_e(double phi, double k, double n, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_ellint_D(double phi, double k, double n, gsl_mode_t mode);
+
+
+/* Carlson's symmetric basis of functions
+ *
+ * RC(x,y)   = 1/2 Integral[(t+x)^(-1/2) (t+y)^(-1)], {t,0,Inf}]
+ * RD(x,y,z) = 3/2 Integral[(t+x)^(-1/2) (t+y)^(-1/2) (t+z)^(-3/2), {t,0,Inf}]
+ * RF(x,y,z) = 1/2 Integral[(t+x)^(-1/2) (t+y)^(-1/2) (t+z)^(-1/2), {t,0,Inf}]
+ * RJ(x,y,z,p) = 3/2 Integral[(t+x)^(-1/2) (t+y)^(-1/2) (t+z)^(-1/2) (t+p)^(-1), {t,0,Inf}]
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_ellint_RC_e(double x, double y, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_ellint_RC(double x, double y, gsl_mode_t mode);
+
+int gsl_sf_ellint_RD_e(double x, double y, double z, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_ellint_RD(double x, double y, double z, gsl_mode_t mode);
+
+int gsl_sf_ellint_RF_e(double x, double y, double z, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_ellint_RF(double x, double y, double z, gsl_mode_t mode);
+
+int gsl_sf_ellint_RJ_e(double x, double y, double z, double p, gsl_mode_t mode, gsl_sf_result * result);
+double gsl_sf_ellint_RJ(double x, double y, double z, double p, gsl_mode_t mode);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_ELLINT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_elljac.h b/util/X86LINUX64/include/gsl/gsl_sf_elljac.h
new file mode 100644 (file)
index 0000000..7f804a5
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_elljac.h
@@ -0,0 +1,48 @@
+/* specfunc/gsl_sf_elljac.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_ELLJAC_H__
+#define __GSL_SF_ELLJAC_H__
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Jacobian elliptic functions sn, dn, cn,
+ * by descending Landen transformations
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_elljac_e(double u, double m, double * sn, double * cn, double * dn);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_ELLJAC_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_erf.h b/util/X86LINUX64/include/gsl/gsl_sf_erf.h
new file mode 100644 (file)
index 0000000..a196d0d
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_erf.h
@@ -0,0 +1,91 @@
+/* specfunc/gsl_sf_erf.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_ERF_H__
+#define __GSL_SF_ERF_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Complementary Error Function
+ * erfc(x) := 2/Sqrt[Pi] Integrate[Exp[-t^2], {t,x,Infinity}]
+ *
+ * exceptions: none
+ */
+int gsl_sf_erfc_e(double x, gsl_sf_result * result);
+double gsl_sf_erfc(double x);
+
+
+/* Log Complementary Error Function
+ *
+ * exceptions: none
+ */
+int gsl_sf_log_erfc_e(double x, gsl_sf_result * result);
+double gsl_sf_log_erfc(double x);
+
+
+/* Error Function
+ * erf(x) := 2/Sqrt[Pi] Integrate[Exp[-t^2], {t,0,x}]
+ *
+ * exceptions: none
+ */
+int gsl_sf_erf_e(double x, gsl_sf_result * result);
+double gsl_sf_erf(double x);
+
+
+/* Probability functions:
+ * Z(x) :  Abramowitz+Stegun 26.2.1
+ * Q(x) :  Abramowitz+Stegun 26.2.3
+ *
+ * exceptions: none
+ */
+int gsl_sf_erf_Z_e(double x, gsl_sf_result * result);
+int gsl_sf_erf_Q_e(double x, gsl_sf_result * result);
+double gsl_sf_erf_Z(double x);
+double gsl_sf_erf_Q(double x);
+
+
+/* Hazard function, also known as the inverse Mill's ratio.
+ *
+ *   H(x) := Z(x)/Q(x)
+ *         = Sqrt[2/Pi] Exp[-x^2 / 2] / Erfc[x/Sqrt[2]]
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int gsl_sf_hazard_e(double x, gsl_sf_result * result);
+double gsl_sf_hazard(double x);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_ERF_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_exp.h b/util/X86LINUX64/include/gsl/gsl_sf_exp.h
new file mode 100644 (file)
index 0000000..8f8aff7
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_exp.h
@@ -0,0 +1,134 @@
+/* specfunc/gsl_sf_exp.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2004 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_EXP_H__
+#define __GSL_SF_EXP_H__
+
+#include <gsl/gsl_sf_result.h>
+#include <gsl/gsl_precision.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/* Provide an exp() function with GSL semantics,
+ * i.e. with proper error checking, etc.
+ *
+ * exceptions: GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_exp_e(const double x, gsl_sf_result * result);
+double gsl_sf_exp(const double x);
+
+
+/* Exp(x)
+ *
+ * exceptions: GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_exp_e10_e(const double x, gsl_sf_result_e10 * result);
+
+
+/* Exponentiate and multiply by a given factor:  y * Exp(x)
+ *
+ * exceptions: GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_exp_mult_e(const double x, const double y, gsl_sf_result * result);
+double gsl_sf_exp_mult(const double x, const double y);
+
+
+/* Exponentiate and multiply by a given factor:  y * Exp(x)
+ *
+ * exceptions: GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_exp_mult_e10_e(const double x, const double y, gsl_sf_result_e10 * result);
+
+
+/* exp(x)-1
+ *
+ * exceptions: GSL_EOVRFLW
+ */
+int gsl_sf_expm1_e(const double x, gsl_sf_result * result);
+double gsl_sf_expm1(const double x);
+
+
+/* (exp(x)-1)/x = 1 + x/2 + x^2/(2*3) + x^3/(2*3*4) + ...
+ *
+ * exceptions: GSL_EOVRFLW
+ */
+int gsl_sf_exprel_e(const double x, gsl_sf_result * result);
+double gsl_sf_exprel(const double x);
+
+
+/* 2(exp(x)-1-x)/x^2 = 1 + x/3 + x^2/(3*4) + x^3/(3*4*5) + ...
+ *
+ * exceptions: GSL_EOVRFLW
+ */
+int gsl_sf_exprel_2_e(double x, gsl_sf_result * result);
+double gsl_sf_exprel_2(const double x);
+
+
+/* Similarly for the N-th generalization of
+ * the above. The so-called N-relative exponential
+ *
+ * exprel_N(x) = N!/x^N (exp(x) - Sum[x^k/k!, {k,0,N-1}])
+ *             = 1 + x/(N+1) + x^2/((N+1)(N+2)) + ...
+ *             = 1F1(1,1+N,x)
+ */
+int gsl_sf_exprel_n_e(const int n, const double x, gsl_sf_result * result);
+double gsl_sf_exprel_n(const int n, const double x);
+
+int gsl_sf_exprel_n_CF_e(const double n, const double x, gsl_sf_result * result);
+
+
+/* Exponentiate a quantity with an associated error.
+ */
+int gsl_sf_exp_err_e(const double x, const double dx, gsl_sf_result * result);
+
+/* Exponentiate a quantity with an associated error.
+ */
+int gsl_sf_exp_err_e10_e(const double x, const double dx, gsl_sf_result_e10 * result);
+
+
+/* Exponentiate and multiply by a given factor:  y * Exp(x),
+ * for quantities with associated errors.
+ *
+ * exceptions: GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_exp_mult_err_e(const double x, const double dx, const double y, const double dy, gsl_sf_result * result);
+
+
+/* Exponentiate and multiply by a given factor:  y * Exp(x),
+ * for quantities with associated errors.
+ *
+ * exceptions: GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_exp_mult_err_e10_e(const double x, const double dx, const double y, const double dy, gsl_sf_result_e10 * result);
+
+__END_DECLS
+
+#endif /* __GSL_SF_EXP_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_expint.h b/util/X86LINUX64/include/gsl/gsl_sf_expint.h
new file mode 100644 (file)
index 0000000..4005f72
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_expint.h
@@ -0,0 +1,167 @@
+/* specfunc/gsl_sf_expint.h
+ * 
+ * Copyright (C) 2007 Brian Gough
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author: G. Jungman */
+
+#ifndef __GSL_SF_EXPINT_H__
+#define __GSL_SF_EXPINT_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* E_1(x) := Re[ Integrate[ Exp[-xt]/t, {t,1,Infinity}] ]
+ *
+ * x != 0.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int     gsl_sf_expint_E1_e(const double x, gsl_sf_result * result);
+double  gsl_sf_expint_E1(const double x);
+
+
+/* E_2(x) := Re[ Integrate[ Exp[-xt]/t^2, {t,1,Infinity}] ]
+ *
+ * x != 0.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int     gsl_sf_expint_E2_e(const double x, gsl_sf_result * result);
+double  gsl_sf_expint_E2(const double x);
+
+
+/* E_n(x) := Re[ Integrate[ Exp[-xt]/t^n, {t,1,Infinity}] ]
+ *
+ * x != 0.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int     gsl_sf_expint_En_e(const int n, const double x, gsl_sf_result * result);
+double  gsl_sf_expint_En(const int n, const double x);
+
+
+/* E_1_scaled(x) := exp(x) E_1(x)
+ *
+ * x != 0.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int     gsl_sf_expint_E1_scaled_e(const double x, gsl_sf_result * result);
+double  gsl_sf_expint_E1_scaled(const double x);
+
+
+/* E_2_scaled(x) := exp(x) E_2(x)
+ *
+ * x != 0.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int     gsl_sf_expint_E2_scaled_e(const double x, gsl_sf_result * result);
+double  gsl_sf_expint_E2_scaled(const double x);
+
+/* E_n_scaled(x) := exp(x) E_n(x)
+ *
+ * x != 0.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int     gsl_sf_expint_En_scaled_e(const int n, const double x, gsl_sf_result * result);
+double  gsl_sf_expint_En_scaled(const int n, const double x);
+
+
+/* Ei(x) := - PV Integrate[ Exp[-t]/t, {t,-x,Infinity}]
+ *       :=   PV Integrate[ Exp[t]/t, {t,-Infinity,x}]
+ *
+ * x != 0.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int     gsl_sf_expint_Ei_e(const double x, gsl_sf_result * result);
+double  gsl_sf_expint_Ei(const double x);
+
+
+/* Ei_scaled(x) := exp(-x) Ei(x)
+ *
+ * x != 0.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int     gsl_sf_expint_Ei_scaled_e(const double x, gsl_sf_result * result);
+double  gsl_sf_expint_Ei_scaled(const double x);
+
+
+/* Shi(x) := Integrate[ Sinh[t]/t, {t,0,x}]
+ *
+ * exceptions: GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int     gsl_sf_Shi_e(const double x, gsl_sf_result * result);
+double  gsl_sf_Shi(const double x);
+
+
+/* Chi(x) := Re[ M_EULER + log(x) + Integrate[(Cosh[t]-1)/t, {t,0,x}] ]
+ *
+ * x != 0.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int     gsl_sf_Chi_e(const double x, gsl_sf_result * result);
+double  gsl_sf_Chi(const double x);
+
+
+/* Ei_3(x) := Integral[ Exp[-t^3], {t,0,x}]
+ *
+ * x >= 0.0
+ * exceptions: GSL_EDOM
+ */
+int     gsl_sf_expint_3_e(const double x, gsl_sf_result * result);
+double  gsl_sf_expint_3(double x);
+
+
+/* Si(x) := Integrate[ Sin[t]/t, {t,0,x}]
+ *
+ * exceptions: none
+ */
+int     gsl_sf_Si_e(const double x, gsl_sf_result * result);
+double  gsl_sf_Si(const double x);
+
+
+/* Ci(x) := -Integrate[ Cos[t]/t, {t,x,Infinity}]
+ *
+ * x > 0.0
+ * exceptions: GSL_EDOM 
+ */
+int     gsl_sf_Ci_e(const double x, gsl_sf_result * result);
+double  gsl_sf_Ci(const double x);
+
+
+/* AtanInt(x) := Integral[ Arctan[t]/t, {t,0,x}]
+ *
+ *
+ * exceptions:
+ */
+int     gsl_sf_atanint_e(const double x, gsl_sf_result * result);
+double  gsl_sf_atanint(const double x);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_EXPINT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_fermi_dirac.h b/util/X86LINUX64/include/gsl/gsl_sf_fermi_dirac.h
new file mode 100644 (file)
index 0000000..8f708cd
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_fermi_dirac.h
@@ -0,0 +1,126 @@
+/* specfunc/gsl_sf_fermi_dirac.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_FERMI_DIRAC_H__
+#define __GSL_SF_FERMI_DIRAC_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Complete Fermi-Dirac Integrals:
+ *
+ *  F_j(x)   := 1/Gamma[j+1] Integral[ t^j /(Exp[t-x] + 1), {t,0,Infinity}]
+ *
+ *
+ * Incomplete Fermi-Dirac Integrals:
+ *
+ *  F_j(x,b) := 1/Gamma[j+1] Integral[ t^j /(Exp[t-x] + 1), {t,b,Infinity}]
+ */
+
+
+/* Complete integral F_{-1}(x) = e^x / (1 + e^x)
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int     gsl_sf_fermi_dirac_m1_e(const double x, gsl_sf_result * result);
+double     gsl_sf_fermi_dirac_m1(const double x);
+
+
+/* Complete integral F_0(x) = ln(1 + e^x)
+ *
+ * exceptions: GSL_EUNDRFLW
+ */
+int     gsl_sf_fermi_dirac_0_e(const double x, gsl_sf_result * result);
+double     gsl_sf_fermi_dirac_0(const double x);
+
+
+/* Complete integral F_1(x)
+ *
+ * exceptions: GSL_EUNDRFLW, GSL_EOVRFLW
+ */
+int     gsl_sf_fermi_dirac_1_e(const double x, gsl_sf_result * result);
+double     gsl_sf_fermi_dirac_1(const double x);
+
+
+/* Complete integral F_2(x)
+ *
+ * exceptions: GSL_EUNDRFLW, GSL_EOVRFLW
+ */
+int     gsl_sf_fermi_dirac_2_e(const double x, gsl_sf_result * result);
+double     gsl_sf_fermi_dirac_2(const double x);
+
+
+/* Complete integral F_j(x)
+ * for integer j
+ *
+ * exceptions: GSL_EUNDRFLW, GSL_EOVRFLW
+ */
+int     gsl_sf_fermi_dirac_int_e(const int j, const double x, gsl_sf_result * result);
+double     gsl_sf_fermi_dirac_int(const int j, const double x);
+
+
+/* Complete integral F_{-1/2}(x)
+ *
+ * exceptions: GSL_EUNDRFLW, GSL_EOVRFLW
+ */
+int     gsl_sf_fermi_dirac_mhalf_e(const double x, gsl_sf_result * result);
+double     gsl_sf_fermi_dirac_mhalf(const double x);
+
+
+/* Complete integral F_{1/2}(x)
+ *
+ * exceptions: GSL_EUNDRFLW, GSL_EOVRFLW
+ */
+int     gsl_sf_fermi_dirac_half_e(const double x, gsl_sf_result * result);
+double     gsl_sf_fermi_dirac_half(const double x);
+
+
+/* Complete integral F_{3/2}(x)
+ *
+ * exceptions: GSL_EUNDRFLW, GSL_EOVRFLW
+ */
+int     gsl_sf_fermi_dirac_3half_e(const double x, gsl_sf_result * result);
+double     gsl_sf_fermi_dirac_3half(const double x);
+
+
+/* Incomplete integral F_0(x,b) = ln(1 + e^(b-x)) - (b-x)
+ *
+ * exceptions: GSL_EUNDRFLW, GSL_EDOM
+ */
+int     gsl_sf_fermi_dirac_inc_0_e(const double x, const double b, gsl_sf_result * result);
+double     gsl_sf_fermi_dirac_inc_0(const double x, const double b);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_FERMI_DIRAC_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_gamma.h b/util/X86LINUX64/include/gsl/gsl_sf_gamma.h
new file mode 100644 (file)
index 0000000..d5e867b
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_gamma.h
@@ -0,0 +1,293 @@
+/* specfunc/gsl_sf_gamma.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_GAMMA_H__
+#define __GSL_SF_GAMMA_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Log[Gamma(x)], x not a negative integer
+ * Uses real Lanczos method.
+ * Returns the real part of Log[Gamma[x]] when x < 0,
+ * i.e. Log[|Gamma[x]|].
+ *
+ * exceptions: GSL_EDOM, GSL_EROUND
+ */
+int gsl_sf_lngamma_e(double x, gsl_sf_result * result);
+double gsl_sf_lngamma(const double x);
+
+
+/* Log[Gamma(x)], x not a negative integer
+ * Uses real Lanczos method. Determines
+ * the sign of Gamma[x] as well as Log[|Gamma[x]|] for x < 0.
+ * So Gamma[x] = sgn * Exp[result_lg].
+ *
+ * exceptions: GSL_EDOM, GSL_EROUND
+ */
+int gsl_sf_lngamma_sgn_e(double x, gsl_sf_result * result_lg, double *sgn);
+
+
+/* Gamma(x), x not a negative integer
+ * Uses real Lanczos method.
+ *
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EROUND
+ */
+int gsl_sf_gamma_e(const double x, gsl_sf_result * result);
+double gsl_sf_gamma(const double x);
+
+
+/* Regulated Gamma Function, x > 0
+ * Gamma^*(x) = Gamma(x)/(Sqrt[2Pi] x^(x-1/2) exp(-x))
+ *            = (1 + 1/(12x) + ...),  x->Inf
+ * A useful suggestion of Temme.
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_gammastar_e(const double x, gsl_sf_result * result);
+double gsl_sf_gammastar(const double x);
+
+
+/* 1/Gamma(x)
+ * Uses real Lanczos method.
+ *
+ * exceptions: GSL_EUNDRFLW, GSL_EROUND
+ */
+int gsl_sf_gammainv_e(const double x, gsl_sf_result * result);
+double gsl_sf_gammainv(const double x);
+
+
+/* Log[Gamma(z)] for z complex, z not a negative integer
+ * Uses complex Lanczos method. Note that the phase part (arg)
+ * is not well-determined when |z| is very large, due
+ * to inevitable roundoff in restricting to (-Pi,Pi].
+ * This will raise the GSL_ELOSS exception when it occurs.
+ * The absolute value part (lnr), however, never suffers.
+ *
+ * Calculates:
+ *   lnr = log|Gamma(z)|
+ *   arg = arg(Gamma(z))  in (-Pi, Pi]
+ *
+ * exceptions: GSL_EDOM, GSL_ELOSS
+ */
+int gsl_sf_lngamma_complex_e(double zr, double zi, gsl_sf_result * lnr, gsl_sf_result * arg);
+
+
+/* x^n / n!
+ *
+ * x >= 0.0, n >= 0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_taylorcoeff_e(const int n, const double x, gsl_sf_result * result);
+double gsl_sf_taylorcoeff(const int n, const double x);
+
+
+/* n!
+ *
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_fact_e(const unsigned int n, gsl_sf_result * result);
+double gsl_sf_fact(const unsigned int n);
+
+
+/* n!! = n(n-2)(n-4) ... 
+ *
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_doublefact_e(const unsigned int n, gsl_sf_result * result);
+double gsl_sf_doublefact(const unsigned int n);
+
+
+/* log(n!) 
+ * Faster than ln(Gamma(n+1)) for n < 170; defers for larger n.
+ *
+ * exceptions: none
+ */
+int gsl_sf_lnfact_e(const unsigned int n, gsl_sf_result * result);
+double gsl_sf_lnfact(const unsigned int n);
+
+
+/* log(n!!) 
+ *
+ * exceptions: none
+ */
+int gsl_sf_lndoublefact_e(const unsigned int n, gsl_sf_result * result);
+double gsl_sf_lndoublefact(const unsigned int n);
+
+
+/* log(n choose m)
+ *
+ * exceptions: GSL_EDOM 
+ */
+int gsl_sf_lnchoose_e(unsigned int n, unsigned int m, gsl_sf_result * result);
+double gsl_sf_lnchoose(unsigned int n, unsigned int m);
+
+
+/* n choose m
+ *
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_choose_e(unsigned int n, unsigned int m, gsl_sf_result * result);
+double gsl_sf_choose(unsigned int n, unsigned int m);
+
+
+/* Logarithm of Pochhammer (Apell) symbol
+ *   log( (a)_x )
+ *   where (a)_x := Gamma[a + x]/Gamma[a]
+ *
+ * a > 0, a+x > 0
+ *
+ * exceptions:  GSL_EDOM
+ */
+int gsl_sf_lnpoch_e(const double a, const double x, gsl_sf_result * result);
+double gsl_sf_lnpoch(const double a, const double x);
+
+
+/* Logarithm of Pochhammer (Apell) symbol, with sign information.
+ *   result = log( |(a)_x| )
+ *   sgn    = sgn( (a)_x )
+ *   where (a)_x := Gamma[a + x]/Gamma[a]
+ *
+ * a != neg integer, a+x != neg integer
+ *
+ * exceptions:  GSL_EDOM
+ */
+int gsl_sf_lnpoch_sgn_e(const double a, const double x, gsl_sf_result * result, double * sgn);
+
+
+/* Pochhammer (Apell) symbol
+ *   (a)_x := Gamma[a + x]/Gamma[x]
+ *
+ * a != neg integer, a+x != neg integer
+ *
+ * exceptions:  GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_poch_e(const double a, const double x, gsl_sf_result * result);
+double gsl_sf_poch(const double a, const double x);
+
+
+/* Relative Pochhammer (Apell) symbol
+ *   ((a,x) - 1)/x
+ *   where (a,x) = (a)_x := Gamma[a + x]/Gamma[a]
+ *
+ * exceptions:  GSL_EDOM
+ */
+int gsl_sf_pochrel_e(const double a, const double x, gsl_sf_result * result);
+double gsl_sf_pochrel(const double a, const double x);
+
+
+/* Normalized Incomplete Gamma Function
+ *
+ * Q(a,x) = 1/Gamma(a) Integral[ t^(a-1) e^(-t), {t,x,Infinity} ]
+ *
+ * a >= 0, x >= 0
+ *   Q(a,0) := 1
+ *   Q(0,x) := 0, x != 0
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_gamma_inc_Q_e(const double a, const double x, gsl_sf_result * result);
+double gsl_sf_gamma_inc_Q(const double a, const double x);
+
+
+/* Complementary Normalized Incomplete Gamma Function
+ *
+ * P(a,x) = 1/Gamma(a) Integral[ t^(a-1) e^(-t), {t,0,x} ]
+ *
+ * a > 0, x >= 0
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_gamma_inc_P_e(const double a, const double x, gsl_sf_result * result);
+double gsl_sf_gamma_inc_P(const double a, const double x);
+
+
+/* Non-normalized Incomplete Gamma Function
+ *
+ * Gamma(a,x) := Integral[ t^(a-1) e^(-t), {t,x,Infinity} ]
+ *
+ * x >= 0.0
+ *   Gamma(a, 0) := Gamma(a)
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_gamma_inc_e(const double a, const double x, gsl_sf_result * result);
+double gsl_sf_gamma_inc(const double a, const double x);
+
+
+/* Logarithm of Beta Function
+ * Log[B(a,b)]
+ *
+ * a > 0, b > 0
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_lnbeta_e(const double a, const double b, gsl_sf_result * result);
+double gsl_sf_lnbeta(const double a, const double b);
+
+int gsl_sf_lnbeta_sgn_e(const double x, const double y, gsl_sf_result * result, double * sgn);
+
+
+/* Beta Function
+ * B(a,b)
+ *
+ * a > 0, b > 0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_beta_e(const double a, const double b, gsl_sf_result * result);
+double gsl_sf_beta(const double a, const double b);
+
+
+/* Normalized Incomplete Beta Function
+ * B_x(a,b)/B(a,b)
+ *
+ * a > 0, b > 0, 0 <= x <= 1
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int gsl_sf_beta_inc_e(const double a, const double b, const double x, gsl_sf_result * result);
+double gsl_sf_beta_inc(const double a, const double b, const double x);
+
+
+/* The maximum x such that gamma(x) is not
+ * considered an overflow.
+ */
+#define GSL_SF_GAMMA_XMAX  171.0
+
+/* The maximum n such that gsl_sf_fact(n) does not give an overflow. */
+#define GSL_SF_FACT_NMAX 170
+
+/* The maximum n such that gsl_sf_doublefact(n) does not give an overflow. */
+#define GSL_SF_DOUBLEFACT_NMAX 297
+
+__END_DECLS
+
+#endif /* __GSL_SF_GAMMA_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_gegenbauer.h b/util/X86LINUX64/include/gsl/gsl_sf_gegenbauer.h
new file mode 100644 (file)
index 0000000..bf41d21
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_gegenbauer.h
@@ -0,0 +1,73 @@
+/* specfunc/gsl_sf_gegenbauer.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_GEGENBAUER_H__
+#define __GSL_SF_GEGENBAUER_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Evaluate Gegenbauer polynomials
+ * using explicit representations.
+ *
+ * exceptions: none
+ */
+int gsl_sf_gegenpoly_1_e(double lambda, double x, gsl_sf_result * result);
+int gsl_sf_gegenpoly_2_e(double lambda, double x, gsl_sf_result * result);
+int gsl_sf_gegenpoly_3_e(double lambda, double x, gsl_sf_result * result);
+double gsl_sf_gegenpoly_1(double lambda, double x);
+double gsl_sf_gegenpoly_2(double lambda, double x);
+double gsl_sf_gegenpoly_3(double lambda, double x);
+
+
+/* Evaluate Gegenbauer polynomials.
+ *
+ * lambda > -1/2, n >= 0
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_gegenpoly_n_e(int n, double lambda, double x, gsl_sf_result * result);
+double gsl_sf_gegenpoly_n(int n, double lambda, double x);
+
+
+/* Calculate array of Gegenbauer polynomials
+ * for n = (0, 1, 2, ... nmax)
+ *
+ * lambda > -1/2, nmax >= 0
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_gegenpoly_array(int nmax, double lambda, double x, double * result_array);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_GEGENBAUER_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_hyperg.h b/util/X86LINUX64/include/gsl/gsl_sf_hyperg.h
new file mode 100644 (file)
index 0000000..8366b88
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_hyperg.h
@@ -0,0 +1,154 @@
+/* specfunc/gsl_sf_hyperg.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_HYPERG_H__
+#define __GSL_SF_HYPERG_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Hypergeometric function related to Bessel functions
+ * 0F1[c,x] =
+ *            Gamma[c]    x^(1/2(1-c)) I_{c-1}(2 Sqrt[x])
+ *            Gamma[c] (-x)^(1/2(1-c)) J_{c-1}(2 Sqrt[-x])
+ *
+ * exceptions: GSL_EOVRFLW, GSL_EUNDRFLW
+ */
+int gsl_sf_hyperg_0F1_e(double c, double x, gsl_sf_result * result);
+double gsl_sf_hyperg_0F1(const double c, const double x);
+
+
+/* Confluent hypergeometric function  for integer parameters.
+ * 1F1[m,n,x] = M(m,n,x)
+ *
+ * exceptions: 
+ */
+int gsl_sf_hyperg_1F1_int_e(const int m, const int n, const double x, gsl_sf_result * result);
+double gsl_sf_hyperg_1F1_int(const int m, const int n, double x);
+
+
+/* Confluent hypergeometric function.
+ * 1F1[a,b,x] = M(a,b,x)
+ *
+ * exceptions:
+ */
+int gsl_sf_hyperg_1F1_e(const double a, const double b, const double x, gsl_sf_result * result);
+double gsl_sf_hyperg_1F1(double a, double b, double x);
+
+
+/* Confluent hypergeometric function for integer parameters.
+ * U(m,n,x)
+ *
+ * exceptions:
+ */
+int gsl_sf_hyperg_U_int_e(const int m, const int n, const double x, gsl_sf_result * result);
+double gsl_sf_hyperg_U_int(const int m, const int n, const double x);
+
+
+/* Confluent hypergeometric function for integer parameters.
+ * U(m,n,x)
+ *
+ * exceptions:
+ */
+int gsl_sf_hyperg_U_int_e10_e(const int m, const int n, const double x, gsl_sf_result_e10 * result);
+
+
+/* Confluent hypergeometric function.
+ * U(a,b,x)
+ *
+ * exceptions:
+ */
+int gsl_sf_hyperg_U_e(const double a, const double b, const double x, gsl_sf_result * result);
+double gsl_sf_hyperg_U(const double a, const double b, const double x);
+
+
+/* Confluent hypergeometric function.
+ * U(a,b,x)
+ *
+ * exceptions:
+ */
+int gsl_sf_hyperg_U_e10_e(const double a, const double b, const double x, gsl_sf_result_e10 * result);
+
+
+/* Gauss hypergeometric function 2F1[a,b,c,x]
+ * |x| < 1
+ *
+ * exceptions:
+ */
+int gsl_sf_hyperg_2F1_e(double a, double b, const double c, const double x, gsl_sf_result * result);
+double gsl_sf_hyperg_2F1(double a, double b, double c, double x);
+
+
+/* Gauss hypergeometric function
+ * 2F1[aR + I aI, aR - I aI, c, x]
+ * |x| < 1
+ *
+ * exceptions:
+ */
+int gsl_sf_hyperg_2F1_conj_e(const double aR, const double aI, const double c, const double x, gsl_sf_result * result);
+double gsl_sf_hyperg_2F1_conj(double aR, double aI, double c, double x);
+
+
+/* Renormalized Gauss hypergeometric function
+ * 2F1[a,b,c,x] / Gamma[c]
+ * |x| < 1
+ *
+ * exceptions:
+ */
+int gsl_sf_hyperg_2F1_renorm_e(const double a, const double b, const double c, const double x, gsl_sf_result * result);
+double gsl_sf_hyperg_2F1_renorm(double a, double b, double c, double x);
+
+
+/* Renormalized Gauss hypergeometric function
+ * 2F1[aR + I aI, aR - I aI, c, x] / Gamma[c]
+ * |x| < 1
+ *
+ * exceptions:
+ */
+int gsl_sf_hyperg_2F1_conj_renorm_e(const double aR, const double aI, const double c, const double x, gsl_sf_result * result);
+double gsl_sf_hyperg_2F1_conj_renorm(double aR, double aI, double c, double x);
+
+
+/* Mysterious hypergeometric function. The series representation
+ * is a divergent hypergeometric series. However, for x < 0 we
+ * have 2F0(a,b,x) = (-1/x)^a U(a,1+a-b,-1/x)
+ *
+ * exceptions: GSL_EDOM
+ */
+int     gsl_sf_hyperg_2F0_e(const double a, const double b, const double x, gsl_sf_result * result);
+double     gsl_sf_hyperg_2F0(const double a, const double b, const double x);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_HYPERG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_laguerre.h b/util/X86LINUX64/include/gsl/gsl_sf_laguerre.h
new file mode 100644 (file)
index 0000000..0d7f1c3
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_laguerre.h
@@ -0,0 +1,68 @@
+/* specfunc/gsl_sf_laguerre.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_LAGUERRE_H__
+#define __GSL_SF_LAGUERRE_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* L^a_n(x) = (a+1)_n / n! 1F1(-n,a+1,x) */
+
+
+/* Evaluate generalized Laguerre polynomials
+ * using explicit representations.
+ *
+ * exceptions: none
+ */
+int gsl_sf_laguerre_1_e(const double a, const double x, gsl_sf_result * result);
+int gsl_sf_laguerre_2_e(const double a, const double x, gsl_sf_result * result);
+int gsl_sf_laguerre_3_e(const double a, const double x, gsl_sf_result * result);
+double gsl_sf_laguerre_1(double a, double x);
+double gsl_sf_laguerre_2(double a, double x);
+double gsl_sf_laguerre_3(double a, double x);
+
+
+/* Evaluate generalized Laguerre polynomials.
+ *
+ * a > -1.0
+ * n >= 0
+ * exceptions: GSL_EDOM
+ */
+int     gsl_sf_laguerre_n_e(const int n, const double a, const double x, gsl_sf_result * result);
+double     gsl_sf_laguerre_n(int n, double a, double x);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_LAGUERRE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_lambert.h b/util/X86LINUX64/include/gsl/gsl_sf_lambert.h
new file mode 100644 (file)
index 0000000..53b70a3
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_lambert.h
@@ -0,0 +1,69 @@
+/* specfunc/gsl_sf_lambert.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_LAMBERT_H__
+#define __GSL_SF_LAMBERT_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Lambert's Function W_0(x)
+ *
+ * W_0(x) is the principal branch of the
+ * implicit function defined by W e^W = x.
+ *
+ * -1/E < x < \infty
+ *
+ * exceptions: GSL_EMAXITER;
+ */
+int     gsl_sf_lambert_W0_e(double x, gsl_sf_result * result);
+double  gsl_sf_lambert_W0(double x);
+
+
+/* Lambert's Function W_{-1}(x)
+ *
+ * W_{-1}(x) is the second real branch of the
+ * implicit function defined by W e^W = x.
+ * It agrees with W_0(x) when x >= 0.
+ *
+ * -1/E < x < \infty
+ *
+ * exceptions: GSL_MAXITER;
+ */
+int     gsl_sf_lambert_Wm1_e(double x, gsl_sf_result * result);
+double  gsl_sf_lambert_Wm1(double x);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_LAMBERT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_legendre.h b/util/X86LINUX64/include/gsl/gsl_sf_legendre.h
new file mode 100644 (file)
index 0000000..918a9bc
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_legendre.h
@@ -0,0 +1,315 @@
+/* specfunc/gsl_sf_legendre.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2004 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_LEGENDRE_H__
+#define __GSL_SF_LEGENDRE_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* P_l(x)   l >= 0; |x| <= 1
+ *
+ * exceptions: GSL_EDOM
+ */
+int     gsl_sf_legendre_Pl_e(const int l, const double x, gsl_sf_result * result);
+double  gsl_sf_legendre_Pl(const int l, const double x);
+
+
+/* P_l(x) for l=0,...,lmax; |x| <= 1
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_legendre_Pl_array(
+  const int lmax, const double x,
+  double * result_array
+  );
+
+
+/* P_l(x) and P_l'(x) for l=0,...,lmax; |x| <= 1
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_legendre_Pl_deriv_array(
+  const int lmax, const double x,
+  double * result_array,
+  double * result_deriv_array
+  );
+
+
+/* P_l(x), l=1,2,3
+ *
+ * exceptions: none
+ */
+int gsl_sf_legendre_P1_e(double x, gsl_sf_result * result);
+int gsl_sf_legendre_P2_e(double x, gsl_sf_result * result);
+int gsl_sf_legendre_P3_e(double x, gsl_sf_result * result);
+double gsl_sf_legendre_P1(const double x);
+double gsl_sf_legendre_P2(const double x);
+double gsl_sf_legendre_P3(const double x);
+
+
+/* Q_0(x), x > -1, x != 1
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_legendre_Q0_e(const double x, gsl_sf_result * result);
+double gsl_sf_legendre_Q0(const double x);
+
+
+/* Q_1(x), x > -1, x != 1
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_legendre_Q1_e(const double x, gsl_sf_result * result);
+double gsl_sf_legendre_Q1(const double x);
+
+
+/* Q_l(x), x > -1, x != 1, l >= 0
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_legendre_Ql_e(const int l, const double x, gsl_sf_result * result);
+double gsl_sf_legendre_Ql(const int l, const double x);
+
+
+/* P_l^m(x)  m >= 0; l >= m; |x| <= 1.0
+ *
+ * Note that this function grows combinatorially with l.
+ * Therefore we can easily generate an overflow for l larger
+ * than about 150.
+ *
+ * There is no trouble for small m, but when m and l are both large,
+ * then there will be trouble. Rather than allow overflows, these
+ * functions refuse to calculate when they can sense that l and m are
+ * too big.
+ *
+ * If you really want to calculate a spherical harmonic, then DO NOT
+ * use this. Instead use legendre_sphPlm() below, which  uses a similar
+ * recursion, but with the normalized functions.
+ *
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int     gsl_sf_legendre_Plm_e(const int l, const int m, const double x, gsl_sf_result * result);
+double  gsl_sf_legendre_Plm(const int l, const int m, const double x);
+
+
+/* P_l^m(x)  m >= 0; l >= m; |x| <= 1.0
+ * l=|m|,...,lmax
+ *
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_legendre_Plm_array(
+  const int lmax, const int m, const double x,
+  double * result_array
+  );
+
+
+/* P_l^m(x)  and d(P_l^m(x))/dx;  m >= 0; lmax >= m; |x| <= 1.0
+ * l=|m|,...,lmax
+ *
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_legendre_Plm_deriv_array(
+  const int lmax, const int m, const double x,
+  double * result_array,
+  double * result_deriv_array
+  );
+
+
+/* P_l^m(x), normalized properly for use in spherical harmonics
+ * m >= 0; l >= m; |x| <= 1.0
+ *
+ * There is no overflow problem, as there is for the
+ * standard normalization of P_l^m(x).
+ *
+ * Specifically, it returns:
+ *
+ *        sqrt((2l+1)/(4pi)) sqrt((l-m)!/(l+m)!) P_l^m(x)
+ *
+ * exceptions: GSL_EDOM
+ */
+int     gsl_sf_legendre_sphPlm_e(const int l, int m, const double x, gsl_sf_result * result);
+double  gsl_sf_legendre_sphPlm(const int l, const int m, const double x);
+
+
+/* sphPlm(l,m,x) values
+ * m >= 0; l >= m; |x| <= 1.0
+ * l=|m|,...,lmax
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_legendre_sphPlm_array(
+  const int lmax, int m, const double x,
+  double * result_array
+  );
+
+
+/* sphPlm(l,m,x) and d(sphPlm(l,m,x))/dx values
+ * m >= 0; l >= m; |x| <= 1.0
+ * l=|m|,...,lmax
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_legendre_sphPlm_deriv_array(
+  const int lmax, const int m, const double x,
+  double * result_array,
+  double * result_deriv_array
+  );
+
+
+
+/* size of result_array[] needed for the array versions of Plm
+ * (lmax - m + 1)
+ */
+int gsl_sf_legendre_array_size(const int lmax, const int m);
+
+/* Irregular Spherical Conical Function
+ * P^{1/2}_{-1/2 + I lambda}(x)
+ *
+ * x > -1.0
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_conicalP_half_e(const double lambda, const double x, gsl_sf_result * result);
+double gsl_sf_conicalP_half(const double lambda, const double x);
+
+
+/* Regular Spherical Conical Function
+ * P^{-1/2}_{-1/2 + I lambda}(x)
+ *
+ * x > -1.0
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_conicalP_mhalf_e(const double lambda, const double x, gsl_sf_result * result);
+double gsl_sf_conicalP_mhalf(const double lambda, const double x);
+
+
+/* Conical Function
+ * P^{0}_{-1/2 + I lambda}(x)
+ *
+ * x > -1.0
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_conicalP_0_e(const double lambda, const double x, gsl_sf_result * result);
+double gsl_sf_conicalP_0(const double lambda, const double x);
+
+
+/* Conical Function
+ * P^{1}_{-1/2 + I lambda}(x)
+ *
+ * x > -1.0
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_conicalP_1_e(const double lambda, const double x, gsl_sf_result * result);
+double gsl_sf_conicalP_1(const double lambda, const double x);
+
+
+/* Regular Spherical Conical Function
+ * P^{-1/2-l}_{-1/2 + I lambda}(x)
+ *
+ * x > -1.0, l >= -1
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_conicalP_sph_reg_e(const int l, const double lambda, const double x, gsl_sf_result * result);
+double gsl_sf_conicalP_sph_reg(const int l, const double lambda, const double x);
+
+
+/* Regular Cylindrical Conical Function
+ * P^{-m}_{-1/2 + I lambda}(x)
+ *
+ * x > -1.0, m >= -1
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_conicalP_cyl_reg_e(const int m, const double lambda, const double x, gsl_sf_result * result);
+double gsl_sf_conicalP_cyl_reg(const int m, const double lambda, const double x);
+
+
+/* The following spherical functions are specializations
+ * of Legendre functions which give the regular eigenfunctions
+ * of the Laplacian on a 3-dimensional hyperbolic space.
+ * Of particular interest is the flat limit, which is
+ * Flat-Lim := {lambda->Inf, eta->0, lambda*eta fixed}.
+ */
+  
+/* Zeroth radial eigenfunction of the Laplacian on the
+ * 3-dimensional hyperbolic space.
+ *
+ * legendre_H3d_0(lambda,eta) := sin(lambda*eta)/(lambda*sinh(eta))
+ * 
+ * Normalization:
+ * Flat-Lim legendre_H3d_0(lambda,eta) = j_0(lambda*eta)
+ *
+ * eta >= 0.0
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_legendre_H3d_0_e(const double lambda, const double eta, gsl_sf_result * result);
+double gsl_sf_legendre_H3d_0(const double lambda, const double eta);
+
+
+/* First radial eigenfunction of the Laplacian on the
+ * 3-dimensional hyperbolic space.
+ *
+ * legendre_H3d_1(lambda,eta) :=
+ *    1/sqrt(lambda^2 + 1) sin(lam eta)/(lam sinh(eta))
+ *    (coth(eta) - lambda cot(lambda*eta))
+ * 
+ * Normalization:
+ * Flat-Lim legendre_H3d_1(lambda,eta) = j_1(lambda*eta)
+ *
+ * eta >= 0.0
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_legendre_H3d_1_e(const double lambda, const double eta, gsl_sf_result * result);
+double gsl_sf_legendre_H3d_1(const double lambda, const double eta);
+
+
+/* l'th radial eigenfunction of the Laplacian on the
+ * 3-dimensional hyperbolic space.
+ *
+ * Normalization:
+ * Flat-Lim legendre_H3d_l(l,lambda,eta) = j_l(lambda*eta)
+ *
+ * eta >= 0.0, l >= 0
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_legendre_H3d_e(const int l, const double lambda, const double eta, gsl_sf_result * result);
+double gsl_sf_legendre_H3d(const int l, const double lambda, const double eta);
+
+
+/* Array of H3d(ell),  0 <= ell <= lmax
+ */
+int gsl_sf_legendre_H3d_array(const int lmax, const double lambda, const double eta, double * result_array);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_LEGENDRE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_log.h b/util/X86LINUX64/include/gsl/gsl_sf_log.h
new file mode 100644 (file)
index 0000000..92aa685
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_log.h
@@ -0,0 +1,82 @@
+/* specfunc/gsl_sf_log.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2004 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_LOG_H__
+#define __GSL_SF_LOG_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Provide a logarithm function with GSL semantics.
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_log_e(const double x, gsl_sf_result * result);
+double gsl_sf_log(const double x);
+
+
+/* Log(|x|)
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_log_abs_e(const double x, gsl_sf_result * result);
+double gsl_sf_log_abs(const double x);
+
+
+/* Complex Logarithm
+ *   exp(lnr + I theta) = zr + I zi
+ * Returns argument in [-pi,pi].
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_complex_log_e(const double zr, const double zi, gsl_sf_result * lnr, gsl_sf_result * theta);
+
+
+/* Log(1 + x)
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_log_1plusx_e(const double x, gsl_sf_result * result);
+double gsl_sf_log_1plusx(const double x);
+
+
+/* Log(1 + x) - x
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_log_1plusx_mx_e(const double x, gsl_sf_result * result);
+double gsl_sf_log_1plusx_mx(const double x);
+
+__END_DECLS
+
+#endif /* __GSL_SF_LOG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_mathieu.h b/util/X86LINUX64/include/gsl/gsl_sf_mathieu.h
new file mode 100644 (file)
index 0000000..19d8256
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_mathieu.h
@@ -0,0 +1,107 @@
+/* specfunc/gsl_sf_mathieu.h
+ * 
+ * Copyright (C) 2002 Lowell Johnson
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
+ */
+
+/* Author:  L. Johnson */
+
+#ifndef __GSL_SF_MATHIEU_H__
+#define __GSL_SF_MATHIEU_H__
+
+#include <gsl/gsl_sf_result.h>
+#include <gsl/gsl_eigen.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+#define GSL_SF_MATHIEU_COEFF 100
+
+typedef struct 
+{
+  size_t size;
+  size_t even_order;
+  size_t odd_order;
+  int extra_values;
+  double qa;   /* allow for caching of results: not implemented yet */
+  double qb;   /* allow for caching of results: not implemented yet */
+  double *aa;
+  double *bb;
+  double *dd;
+  double *ee;
+  double *tt;
+  double *e2;
+  double *zz;
+  gsl_vector *eval;
+  gsl_matrix *evec;
+  gsl_eigen_symmv_workspace *wmat;
+} gsl_sf_mathieu_workspace;
+
+
+/* Compute an array of characteristic (eigen) values from the recurrence
+   matrices for the Mathieu equations. */
+int gsl_sf_mathieu_a_array(int order_min, int order_max, double qq, gsl_sf_mathieu_workspace *work, double result_array[]);
+int gsl_sf_mathieu_b_array(int order_min, int order_max, double qq,  gsl_sf_mathieu_workspace *work, double result_array[]);
+
+/* Compute the characteristic value for a Mathieu function of order n and
+   type ntype. */
+int gsl_sf_mathieu_a(int order, double qq, gsl_sf_result *result);
+int gsl_sf_mathieu_b(int order, double qq, gsl_sf_result *result);
+
+/* Compute the Fourier coefficients for a Mathieu function. */
+int gsl_sf_mathieu_a_coeff(int order, double qq, double aa, double coeff[]);
+int gsl_sf_mathieu_b_coeff(int order, double qq, double aa, double coeff[]);
+
+/* Allocate computational storage space for eigenvalue solution. */
+gsl_sf_mathieu_workspace *gsl_sf_mathieu_alloc(const size_t nn,
+                                               const double qq);
+void gsl_sf_mathieu_free(gsl_sf_mathieu_workspace *workspace);
+
+/* Compute an angular Mathieu function. */
+int gsl_sf_mathieu_ce(int order, double qq, double zz, gsl_sf_result *result);
+int gsl_sf_mathieu_se(int order, double qq, double zz, gsl_sf_result *result);
+int gsl_sf_mathieu_ce_array(int nmin, int nmax, double qq, double zz,
+                            gsl_sf_mathieu_workspace *work,
+                            double result_array[]);
+int gsl_sf_mathieu_se_array(int nmin, int nmax, double qq, double zz,
+                            gsl_sf_mathieu_workspace *work,
+                            double result_array[]);
+
+/* Compute a radial Mathieu function. */
+int gsl_sf_mathieu_Mc(int kind, int order, double qq, double zz,
+                      gsl_sf_result *result);
+int gsl_sf_mathieu_Ms(int kind, int order, double qq, double zz,
+                      gsl_sf_result *result);
+int gsl_sf_mathieu_Mc_array(int kind, int nmin, int nmax, double qq,
+                            double zz, gsl_sf_mathieu_workspace *work,
+                            double result_array[]);
+int gsl_sf_mathieu_Ms_array(int kind, int nmin, int nmax, double qq,
+                            double zz, gsl_sf_mathieu_workspace *work,
+                            double result_array[]);
+
+
+__END_DECLS
+
+#endif /* !__GSL_SF_MATHIEU_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_pow_int.h b/util/X86LINUX64/include/gsl/gsl_sf_pow_int.h
new file mode 100644 (file)
index 0000000..e535d57
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_pow_int.h
@@ -0,0 +1,49 @@
+/* specfunc/gsl_sf_pow_int.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_POW_INT_H__
+#define __GSL_SF_POW_INT_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Calculate x^n.
+ * Does not check for overflow/underflow.
+ */
+int     gsl_sf_pow_int_e(double x, int n, gsl_sf_result * result);
+double  gsl_sf_pow_int(const double x, const int n);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_POW_INT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_psi.h b/util/X86LINUX64/include/gsl/gsl_sf_psi.h
new file mode 100644 (file)
index 0000000..ec61179
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_psi.h
@@ -0,0 +1,113 @@
+/* specfunc/gsl_sf_psi.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2004 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_PSI_H__
+#define __GSL_SF_PSI_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Poly-Gamma Functions
+ *
+ * psi(m,x) := (d/dx)^m psi(0,x) = (d/dx)^{m+1} log(gamma(x))
+ */
+
+
+/* Di-Gamma Function  psi(n) = psi(0,n)
+ *
+ * n > 0
+ * exceptions: GSL_EDOM
+ */
+int     gsl_sf_psi_int_e(const int n, gsl_sf_result * result);
+double  gsl_sf_psi_int(const int n);
+
+
+/* Di-Gamma Function psi(x) = psi(0, x)
+ *
+ * x != 0.0, -1.0, -2.0, ...
+ * exceptions: GSL_EDOM, GSL_ELOSS
+ */
+int     gsl_sf_psi_e(const double x, gsl_sf_result * result);
+double  gsl_sf_psi(const double x);
+
+
+/* Di-Gamma Function Re[psi(1 + I y)]
+ *
+ * exceptions: none
+ */
+int     gsl_sf_psi_1piy_e(const double y, gsl_sf_result * result);
+double  gsl_sf_psi_1piy(const double y);
+
+
+/* Di-Gamma Function psi(z) for general complex argument z = x + iy
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_complex_psi_e(
+  const double x,
+  const double y,
+  gsl_sf_result * result_re,
+  gsl_sf_result * result_im
+  );
+
+
+/* Tri-Gamma Function psi^(1)(n)
+ *
+ * n > 0
+ * exceptions: GSL_EDOM
+ */
+int     gsl_sf_psi_1_int_e(const int n, gsl_sf_result * result);
+double  gsl_sf_psi_1_int(const int n);
+
+
+/* Tri-Gamma Function psi^(1)(x)
+ *
+ * x != 0.0, -1.0, -2.0, ...
+ * exceptions: GSL_EDOM, GSL_ELOSS
+ */
+int     gsl_sf_psi_1_e(const double x, gsl_sf_result * result);
+double  gsl_sf_psi_1(const double x);
+
+
+/* Poly-Gamma Function psi^(n)(x)
+ *
+ * n >= 0, x > 0.0
+ * exceptions: GSL_EDOM
+ */
+int     gsl_sf_psi_n_e(const int n, const double x, gsl_sf_result * result);
+double  gsl_sf_psi_n(const int n, const double x);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_PSI_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_result.h b/util/X86LINUX64/include/gsl/gsl_sf_result.h
new file mode 100644 (file)
index 0000000..512bad7
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_result.h
@@ -0,0 +1,59 @@
+/* specfunc/gsl_sf_result.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_RESULT_H__
+#define __GSL_SF_RESULT_H__
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+struct gsl_sf_result_struct {
+  double val;
+  double err;
+};
+typedef struct gsl_sf_result_struct gsl_sf_result;
+
+#define GSL_SF_RESULT_SET(r,v,e) do { (r)->val=(v); (r)->err=(e); } while(0)
+
+
+struct gsl_sf_result_e10_struct {
+  double val;
+  double err;
+  int    e10;
+};
+typedef struct gsl_sf_result_e10_struct gsl_sf_result_e10;
+
+
+int gsl_sf_result_smash_e(const gsl_sf_result_e10 * re, gsl_sf_result * r);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_RESULT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_synchrotron.h b/util/X86LINUX64/include/gsl/gsl_sf_synchrotron.h
new file mode 100644 (file)
index 0000000..26028c8
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_synchrotron.h
@@ -0,0 +1,60 @@
+/* specfunc/gsl_sf_synchrotron.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_SYNCHROTRON_H__
+#define __GSL_SF_SYNCHROTRON_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* First synchrotron function:
+ *   synchrotron_1(x) = x Integral[ K_{5/3}(t), {t, x, Infinity}]
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int     gsl_sf_synchrotron_1_e(const double x, gsl_sf_result * result);
+double     gsl_sf_synchrotron_1(const double x);
+
+
+/* Second synchroton function:
+ *   synchrotron_2(x) = x * K_{2/3}(x)
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int     gsl_sf_synchrotron_2_e(const double x, gsl_sf_result * result);
+double     gsl_sf_synchrotron_2(const double x);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_SYNCHROTRON_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_transport.h b/util/X86LINUX64/include/gsl/gsl_sf_transport.h
new file mode 100644 (file)
index 0000000..c0fd7fc
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_transport.h
@@ -0,0 +1,78 @@
+/* specfunc/gsl_sf_transport.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_TRANSPORT_H__
+#define __GSL_SF_TRANSPORT_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Transport function:
+ *   J(n,x) := Integral[ t^n e^t /(e^t - 1)^2, {t,0,x}]
+ */
+
+/* J(2,x)
+ *
+ * exceptions: GSL_EDOM
+ */
+int     gsl_sf_transport_2_e(const double x, gsl_sf_result * result);
+double     gsl_sf_transport_2(const double x);
+
+
+/* J(3,x)
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int     gsl_sf_transport_3_e(const double x, gsl_sf_result * result);
+double     gsl_sf_transport_3(const double x);
+
+
+/* J(4,x)
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int     gsl_sf_transport_4_e(const double x, gsl_sf_result * result);
+double     gsl_sf_transport_4(const double x);
+
+
+/* J(5,x)
+ *
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW
+ */
+int     gsl_sf_transport_5_e(const double x, gsl_sf_result * result);
+double     gsl_sf_transport_5(const double x);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_TRANSPORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_trig.h b/util/X86LINUX64/include/gsl/gsl_sf_trig.h
new file mode 100644 (file)
index 0000000..e2c5722
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_trig.h
@@ -0,0 +1,152 @@
+/* specfunc/gsl_sf_trig.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_TRIG_H__
+#define __GSL_SF_TRIG_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Sin(x) with GSL semantics. This is actually important
+ * because we want to control the error estimate, and trying
+ * to guess the error for the standard library implementation
+ * every time it is used would be a little goofy.
+ */
+int gsl_sf_sin_e(double x, gsl_sf_result * result);
+double gsl_sf_sin(const double x);
+
+
+/* Cos(x) with GSL semantics.
+ */
+int gsl_sf_cos_e(double x, gsl_sf_result * result);
+double gsl_sf_cos(const double x);
+
+
+/* Hypot(x,y) with GSL semantics.
+ */
+int gsl_sf_hypot_e(const double x, const double y, gsl_sf_result * result);
+double gsl_sf_hypot(const double x, const double y);
+
+
+/* Sin(z) for complex z
+ *
+ * exceptions: GSL_EOVRFLW
+ */
+int gsl_sf_complex_sin_e(const double zr, const double zi, gsl_sf_result * szr, gsl_sf_result * szi);
+
+
+/* Cos(z) for complex z
+ *
+ * exceptions: GSL_EOVRFLW
+ */
+int gsl_sf_complex_cos_e(const double zr, const double zi, gsl_sf_result * czr, gsl_sf_result * czi);
+
+
+/* Log(Sin(z)) for complex z
+ *
+ * exceptions: GSL_EDOM, GSL_ELOSS
+ */
+int gsl_sf_complex_logsin_e(const double zr, const double zi, gsl_sf_result * lszr, gsl_sf_result * lszi);
+
+
+/* Sinc(x) = sin(pi x) / (pi x)
+ *
+ * exceptions: none
+ */
+int gsl_sf_sinc_e(double x, gsl_sf_result * result);
+double gsl_sf_sinc(const double x);
+
+
+/* Log(Sinh(x)), x > 0
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_lnsinh_e(const double x, gsl_sf_result * result);
+double gsl_sf_lnsinh(const double x);
+
+
+/* Log(Cosh(x))
+ *
+ * exceptions: none
+ */
+int gsl_sf_lncosh_e(const double x, gsl_sf_result * result);
+double gsl_sf_lncosh(const double x);
+
+
+/* Convert polar to rectlinear coordinates.
+ *
+ * exceptions: GSL_ELOSS
+ */
+int gsl_sf_polar_to_rect(const double r, const double theta, gsl_sf_result * x, gsl_sf_result * y);
+
+/* Convert rectilinear to polar coordinates.
+ * return argument in range [-pi, pi]
+ *
+ * exceptions: GSL_EDOM
+ */
+int gsl_sf_rect_to_polar(const double x, const double y, gsl_sf_result * r, gsl_sf_result * theta);
+
+/* Sin(x) for quantity with an associated error.
+ */
+int gsl_sf_sin_err_e(const double x, const double dx, gsl_sf_result * result);
+
+
+/* Cos(x) for quantity with an associated error.
+ */
+int gsl_sf_cos_err_e(const double x, const double dx, gsl_sf_result * result);
+
+
+/* Force an angle to lie in the range (-pi,pi].
+ *
+ * exceptions: GSL_ELOSS
+ */
+int gsl_sf_angle_restrict_symm_e(double * theta);
+double gsl_sf_angle_restrict_symm(const double theta);
+
+
+/* Force an angle to lie in the range [0, 2pi)
+ *
+ * exceptions: GSL_ELOSS
+ */
+int gsl_sf_angle_restrict_pos_e(double * theta);
+double gsl_sf_angle_restrict_pos(const double theta);
+
+
+int gsl_sf_angle_restrict_symm_err_e(const double theta, gsl_sf_result * result);
+
+int gsl_sf_angle_restrict_pos_err_e(const double theta, gsl_sf_result * result);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_TRIG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sf_zeta.h b/util/X86LINUX64/include/gsl/gsl_sf_zeta.h
new file mode 100644 (file)
index 0000000..2d7fad0
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sf_zeta.h
@@ -0,0 +1,112 @@
+/* specfunc/gsl_sf_zeta.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2004 Gerard Jungman
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+#ifndef __GSL_SF_ZETA_H__
+#define __GSL_SF_ZETA_H__
+
+#include <gsl/gsl_sf_result.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* Riemann Zeta Function
+ * zeta(n) = Sum[ k^(-n), {k,1,Infinity} ]
+ *
+ * n=integer, n != 1
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_zeta_int_e(const int n, gsl_sf_result * result);
+double gsl_sf_zeta_int(const int n);
+
+
+/* Riemann Zeta Function
+ * zeta(x) = Sum[ k^(-s), {k,1,Infinity} ], s != 1.0
+ *
+ * s != 1.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_zeta_e(const double s, gsl_sf_result * result);
+double gsl_sf_zeta(const double s);
+
+
+/* Riemann Zeta Function minus 1
+ *   useful for evaluating the fractional part
+ *   of Riemann zeta for large argument
+ *
+ * s != 1.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_zetam1_e(const double s, gsl_sf_result * result);
+double gsl_sf_zetam1(const double s);
+
+
+/* Riemann Zeta Function minus 1 for integer arg
+ *   useful for evaluating the fractional part
+ *   of Riemann zeta for large argument
+ *
+ * s != 1.0
+ * exceptions: GSL_EDOM, GSL_EOVRFLW
+ */
+int gsl_sf_zetam1_int_e(const int s, gsl_sf_result * result);
+double gsl_sf_zetam1_int(const int s);
+
+
+/* Hurwitz Zeta Function
+ * zeta(s,q) = Sum[ (k+q)^(-s), {k,0,Infinity} ]
+ *
+ * s > 1.0, q > 0.0
+ * exceptions: GSL_EDOM, GSL_EUNDRFLW, GSL_EOVRFLW
+ */
+int gsl_sf_hzeta_e(const double s, const double q, gsl_sf_result * result);
+double gsl_sf_hzeta(const double s, const double q);
+
+
+/* Eta Function
+ * eta(n) = (1-2^(1-n)) zeta(n)
+ *
+ * exceptions: GSL_EUNDRFLW, GSL_EOVRFLW
+ */
+int gsl_sf_eta_int_e(int n, gsl_sf_result * result);
+double gsl_sf_eta_int(const int n);
+
+
+/* Eta Function
+ * eta(s) = (1-2^(1-s)) zeta(s)
+ *
+ * exceptions: GSL_EUNDRFLW, GSL_EOVRFLW
+ */
+int gsl_sf_eta_e(const double s, gsl_sf_result * result);
+double gsl_sf_eta(const double s);
+
+
+__END_DECLS
+
+#endif /* __GSL_SF_ZETA_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_siman.h b/util/X86LINUX64/include/gsl/gsl_siman.h
new file mode 100644 (file)
index 0000000..a16f7c7
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_siman.h
@@ -0,0 +1,82 @@
+/* siman/gsl_siman.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000 Mark Galassi
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SIMAN_H__
+#define __GSL_SIMAN_H__
+#include <stdlib.h>
+#include <gsl/gsl_rng.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/* types for the function pointers passed to gsl_siman_solve */
+
+typedef double (*gsl_siman_Efunc_t) (void *xp);
+typedef void (*gsl_siman_step_t) (const gsl_rng *r, void *xp, double step_size);
+typedef double (*gsl_siman_metric_t) (void *xp, void *yp);
+typedef void (*gsl_siman_print_t) (void *xp);
+typedef void (*gsl_siman_copy_t) (void *source, void *dest);
+typedef void * (*gsl_siman_copy_construct_t) (void *xp);
+typedef void (*gsl_siman_destroy_t) (void *xp);
+
+/* this structure contains all the information needed to structure the
+   search, beyond the energy function, the step function and the
+   initial guess. */
+
+typedef struct {
+  int n_tries;          /* how many points to try for each step */
+  int iters_fixed_T;    /* how many iterations at each temperature? */
+  double step_size;     /* max step size in the random walk */
+  /* the following parameters are for the Boltzmann distribution */
+  double k, t_initial, mu_t, t_min;
+} gsl_siman_params_t;
+
+/* prototype for the workhorse function */
+
+void gsl_siman_solve(const gsl_rng * r, 
+                     void *x0_p, gsl_siman_Efunc_t Ef,
+                     gsl_siman_step_t take_step,
+                     gsl_siman_metric_t distance,
+                     gsl_siman_print_t print_position,
+                     gsl_siman_copy_t copyfunc,
+                     gsl_siman_copy_construct_t copy_constructor,
+                     gsl_siman_destroy_t destructor,
+                     size_t element_size,
+                     gsl_siman_params_t params);
+
+void 
+gsl_siman_solve_many (const gsl_rng * r, void *x0_p, gsl_siman_Efunc_t Ef,
+                      gsl_siman_step_t take_step,
+                      gsl_siman_metric_t distance,
+                      gsl_siman_print_t print_position,
+                      size_t element_size,
+                      gsl_siman_params_t params);
+
+__END_DECLS
+
+#endif /* __GSL_SIMAN_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort.h b/util/X86LINUX64/include/gsl/gsl_sort.h
new file mode 100644 (file)
index 0000000..b1496c2
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort.h
@@ -0,0 +1,20 @@
+#ifndef __GSL_SORT_H__
+#define __GSL_SORT_H__
+
+#include <gsl/gsl_sort_long_double.h>
+#include <gsl/gsl_sort_double.h>
+#include <gsl/gsl_sort_float.h>
+
+#include <gsl/gsl_sort_ulong.h>
+#include <gsl/gsl_sort_long.h>
+
+#include <gsl/gsl_sort_uint.h>
+#include <gsl/gsl_sort_int.h>
+
+#include <gsl/gsl_sort_ushort.h>
+#include <gsl/gsl_sort_short.h>
+
+#include <gsl/gsl_sort_uchar.h>
+#include <gsl/gsl_sort_char.h>
+
+#endif /* __GSL_SORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_char.h b/util/X86LINUX64/include/gsl/gsl_sort_char.h
new file mode 100644 (file)
index 0000000..f709e3d
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_char.h
@@ -0,0 +1,50 @@
+/* sort/gsl_sort_char.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_CHAR_H__
+#define __GSL_SORT_CHAR_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_char (char * data, const size_t stride, const size_t n);
+void gsl_sort_char_index (size_t * p, const char * data, const size_t stride, const size_t n);
+
+int gsl_sort_char_smallest (char * dest, const size_t k, const char * src, const size_t stride, const size_t n);
+int gsl_sort_char_smallest_index (size_t * p, const size_t k, const char * src, const size_t stride, const size_t n);
+
+int gsl_sort_char_largest (char * dest, const size_t k, const char * src, const size_t stride, const size_t n);
+int gsl_sort_char_largest_index (size_t * p, const size_t k, const char * src, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_CHAR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_double.h b/util/X86LINUX64/include/gsl/gsl_sort_double.h
new file mode 100644 (file)
index 0000000..aa44ab1
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_double.h
@@ -0,0 +1,50 @@
+/* sort/gsl_sort_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_DOUBLE_H__
+#define __GSL_SORT_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort (double * data, const size_t stride, const size_t n);
+void gsl_sort_index (size_t * p, const double * data, const size_t stride, const size_t n);
+
+int gsl_sort_smallest (double * dest, const size_t k, const double * src, const size_t stride, const size_t n);
+int gsl_sort_smallest_index (size_t * p, const size_t k, const double * src, const size_t stride, const size_t n);
+
+int gsl_sort_largest (double * dest, const size_t k, const double * src, const size_t stride, const size_t n);
+int gsl_sort_largest_index (size_t * p, const size_t k, const double * src, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_float.h b/util/X86LINUX64/include/gsl/gsl_sort_float.h
new file mode 100644 (file)
index 0000000..116a2f2
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_float.h
@@ -0,0 +1,50 @@
+/* sort/gsl_sort_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_FLOAT_H__
+#define __GSL_SORT_FLOAT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_float (float * data, const size_t stride, const size_t n);
+void gsl_sort_float_index (size_t * p, const float * data, const size_t stride, const size_t n);
+
+int gsl_sort_float_smallest (float * dest, const size_t k, const float * src, const size_t stride, const size_t n);
+int gsl_sort_float_smallest_index (size_t * p, const size_t k, const float * src, const size_t stride, const size_t n);
+
+int gsl_sort_float_largest (float * dest, const size_t k, const float * src, const size_t stride, const size_t n);
+int gsl_sort_float_largest_index (size_t * p, const size_t k, const float * src, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_int.h b/util/X86LINUX64/include/gsl/gsl_sort_int.h
new file mode 100644 (file)
index 0000000..3b1e210
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_int.h
@@ -0,0 +1,50 @@
+/* sort/gsl_sort_int.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_INT_H__
+#define __GSL_SORT_INT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_int (int * data, const size_t stride, const size_t n);
+void gsl_sort_int_index (size_t * p, const int * data, const size_t stride, const size_t n);
+
+int gsl_sort_int_smallest (int * dest, const size_t k, const int * src, const size_t stride, const size_t n);
+int gsl_sort_int_smallest_index (size_t * p, const size_t k, const int * src, const size_t stride, const size_t n);
+
+int gsl_sort_int_largest (int * dest, const size_t k, const int * src, const size_t stride, const size_t n);
+int gsl_sort_int_largest_index (size_t * p, const size_t k, const int * src, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_INT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_long.h b/util/X86LINUX64/include/gsl/gsl_sort_long.h
new file mode 100644 (file)
index 0000000..3b851d1
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_long.h
@@ -0,0 +1,50 @@
+/* sort/gsl_sort_long.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_LONG_H__
+#define __GSL_SORT_LONG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_long (long * data, const size_t stride, const size_t n);
+void gsl_sort_long_index (size_t * p, const long * data, const size_t stride, const size_t n);
+
+int gsl_sort_long_smallest (long * dest, const size_t k, const long * src, const size_t stride, const size_t n);
+int gsl_sort_long_smallest_index (size_t * p, const size_t k, const long * src, const size_t stride, const size_t n);
+
+int gsl_sort_long_largest (long * dest, const size_t k, const long * src, const size_t stride, const size_t n);
+int gsl_sort_long_largest_index (size_t * p, const size_t k, const long * src, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_LONG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_long_double.h b/util/X86LINUX64/include/gsl/gsl_sort_long_double.h
new file mode 100644 (file)
index 0000000..4928865
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_long_double.h
@@ -0,0 +1,50 @@
+/* sort/gsl_sort_long_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_LONG_DOUBLE_H__
+#define __GSL_SORT_LONG_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_long_double (long double * data, const size_t stride, const size_t n);
+void gsl_sort_long_double_index (size_t * p, const long double * data, const size_t stride, const size_t n);
+
+int gsl_sort_long_double_smallest (long double * dest, const size_t k, const long double * src, const size_t stride, const size_t n);
+int gsl_sort_long_double_smallest_index (size_t * p, const size_t k, const long double * src, const size_t stride, const size_t n);
+
+int gsl_sort_long_double_largest (long double * dest, const size_t k, const long double * src, const size_t stride, const size_t n);
+int gsl_sort_long_double_largest_index (size_t * p, const size_t k, const long double * src, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_LONG_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_short.h b/util/X86LINUX64/include/gsl/gsl_sort_short.h
new file mode 100644 (file)
index 0000000..0773cb1
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_short.h
@@ -0,0 +1,50 @@
+/* sort/gsl_sort_short.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_SHORT_H__
+#define __GSL_SORT_SHORT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_short (short * data, const size_t stride, const size_t n);
+void gsl_sort_short_index (size_t * p, const short * data, const size_t stride, const size_t n);
+
+int gsl_sort_short_smallest (short * dest, const size_t k, const short * src, const size_t stride, const size_t n);
+int gsl_sort_short_smallest_index (size_t * p, const size_t k, const short * src, const size_t stride, const size_t n);
+
+int gsl_sort_short_largest (short * dest, const size_t k, const short * src, const size_t stride, const size_t n);
+int gsl_sort_short_largest_index (size_t * p, const size_t k, const short * src, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_SHORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_uchar.h b/util/X86LINUX64/include/gsl/gsl_sort_uchar.h
new file mode 100644 (file)
index 0000000..0292dfe
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_uchar.h
@@ -0,0 +1,50 @@
+/* sort/gsl_sort_uchar.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_UCHAR_H__
+#define __GSL_SORT_UCHAR_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_uchar (unsigned char * data, const size_t stride, const size_t n);
+void gsl_sort_uchar_index (size_t * p, const unsigned char * data, const size_t stride, const size_t n);
+
+int gsl_sort_uchar_smallest (unsigned char * dest, const size_t k, const unsigned char * src, const size_t stride, const size_t n);
+int gsl_sort_uchar_smallest_index (size_t * p, const size_t k, const unsigned char * src, const size_t stride, const size_t n);
+
+int gsl_sort_uchar_largest (unsigned char * dest, const size_t k, const unsigned char * src, const size_t stride, const size_t n);
+int gsl_sort_uchar_largest_index (size_t * p, const size_t k, const unsigned char * src, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_UCHAR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_uint.h b/util/X86LINUX64/include/gsl/gsl_sort_uint.h
new file mode 100644 (file)
index 0000000..740df82
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_uint.h
@@ -0,0 +1,50 @@
+/* sort/gsl_sort_uint.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_UINT_H__
+#define __GSL_SORT_UINT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_uint (unsigned int * data, const size_t stride, const size_t n);
+void gsl_sort_uint_index (size_t * p, const unsigned int * data, const size_t stride, const size_t n);
+
+int gsl_sort_uint_smallest (unsigned int * dest, const size_t k, const unsigned int * src, const size_t stride, const size_t n);
+int gsl_sort_uint_smallest_index (size_t * p, const size_t k, const unsigned int * src, const size_t stride, const size_t n);
+
+int gsl_sort_uint_largest (unsigned int * dest, const size_t k, const unsigned int * src, const size_t stride, const size_t n);
+int gsl_sort_uint_largest_index (size_t * p, const size_t k, const unsigned int * src, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_UINT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_ulong.h b/util/X86LINUX64/include/gsl/gsl_sort_ulong.h
new file mode 100644 (file)
index 0000000..bdbd4c6
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_ulong.h
@@ -0,0 +1,50 @@
+/* sort/gsl_sort_ulong.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_ULONG_H__
+#define __GSL_SORT_ULONG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_ulong (unsigned long * data, const size_t stride, const size_t n);
+void gsl_sort_ulong_index (size_t * p, const unsigned long * data, const size_t stride, const size_t n);
+
+int gsl_sort_ulong_smallest (unsigned long * dest, const size_t k, const unsigned long * src, const size_t stride, const size_t n);
+int gsl_sort_ulong_smallest_index (size_t * p, const size_t k, const unsigned long * src, const size_t stride, const size_t n);
+
+int gsl_sort_ulong_largest (unsigned long * dest, const size_t k, const unsigned long * src, const size_t stride, const size_t n);
+int gsl_sort_ulong_largest_index (size_t * p, const size_t k, const unsigned long * src, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_ULONG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_ushort.h b/util/X86LINUX64/include/gsl/gsl_sort_ushort.h
new file mode 100644 (file)
index 0000000..a29bb69
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_ushort.h
@@ -0,0 +1,50 @@
+/* sort/gsl_sort_ushort.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_USHORT_H__
+#define __GSL_SORT_USHORT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_ushort (unsigned short * data, const size_t stride, const size_t n);
+void gsl_sort_ushort_index (size_t * p, const unsigned short * data, const size_t stride, const size_t n);
+
+int gsl_sort_ushort_smallest (unsigned short * dest, const size_t k, const unsigned short * src, const size_t stride, const size_t n);
+int gsl_sort_ushort_smallest_index (size_t * p, const size_t k, const unsigned short * src, const size_t stride, const size_t n);
+
+int gsl_sort_ushort_largest (unsigned short * dest, const size_t k, const unsigned short * src, const size_t stride, const size_t n);
+int gsl_sort_ushort_largest_index (size_t * p, const size_t k, const unsigned short * src, const size_t stride, const size_t n);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_USHORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_vector.h b/util/X86LINUX64/include/gsl/gsl_sort_vector.h
new file mode 100644 (file)
index 0000000..d65a9ee
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_vector.h
@@ -0,0 +1,20 @@
+#ifndef __GSL_SORT_VECTOR_H__
+#define __GSL_SORT_VECTOR_H__
+
+#include <gsl/gsl_sort_vector_long_double.h>
+#include <gsl/gsl_sort_vector_double.h>
+#include <gsl/gsl_sort_vector_float.h>
+
+#include <gsl/gsl_sort_vector_ulong.h>
+#include <gsl/gsl_sort_vector_long.h>
+
+#include <gsl/gsl_sort_vector_uint.h>
+#include <gsl/gsl_sort_vector_int.h>
+
+#include <gsl/gsl_sort_vector_ushort.h>
+#include <gsl/gsl_sort_vector_short.h>
+
+#include <gsl/gsl_sort_vector_uchar.h>
+#include <gsl/gsl_sort_vector_char.h>
+
+#endif /* __GSL_SORT_VECTOR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_vector_char.h b/util/X86LINUX64/include/gsl/gsl_sort_vector_char.h
new file mode 100644 (file)
index 0000000..488fdc6
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_vector_char.h
@@ -0,0 +1,51 @@
+/* sort/gsl_sort_vector_char.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_VECTOR_CHAR_H__
+#define __GSL_SORT_VECTOR_CHAR_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_char.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_vector_char (gsl_vector_char * v);
+int gsl_sort_vector_char_index (gsl_permutation * p, const gsl_vector_char * v);
+
+int gsl_sort_vector_char_smallest (char * dest, const size_t k, const gsl_vector_char * v);
+int gsl_sort_vector_char_largest (char * dest, const size_t k, const gsl_vector_char * v);
+
+int gsl_sort_vector_char_smallest_index (size_t * p, const size_t k, const gsl_vector_char * v);
+int gsl_sort_vector_char_largest_index (size_t * p, const size_t k, const gsl_vector_char * v);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_VECTOR_CHAR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_vector_double.h b/util/X86LINUX64/include/gsl/gsl_sort_vector_double.h
new file mode 100644 (file)
index 0000000..9430fd4
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_vector_double.h
@@ -0,0 +1,51 @@
+/* sort/gsl_sort_vector_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_VECTOR_DOUBLE_H__
+#define __GSL_SORT_VECTOR_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_double.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_vector (gsl_vector * v);
+int gsl_sort_vector_index (gsl_permutation * p, const gsl_vector * v);
+
+int gsl_sort_vector_smallest (double * dest, const size_t k, const gsl_vector * v);
+int gsl_sort_vector_largest (double * dest, const size_t k, const gsl_vector * v);
+
+int gsl_sort_vector_smallest_index (size_t * p, const size_t k, const gsl_vector * v);
+int gsl_sort_vector_largest_index (size_t * p, const size_t k, const gsl_vector * v);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_VECTOR_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_vector_float.h b/util/X86LINUX64/include/gsl/gsl_sort_vector_float.h
new file mode 100644 (file)
index 0000000..fc0df55
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_vector_float.h
@@ -0,0 +1,51 @@
+/* sort/gsl_sort_vector_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_VECTOR_FLOAT_H__
+#define __GSL_SORT_VECTOR_FLOAT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_float.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_vector_float (gsl_vector_float * v);
+int gsl_sort_vector_float_index (gsl_permutation * p, const gsl_vector_float * v);
+
+int gsl_sort_vector_float_smallest (float * dest, const size_t k, const gsl_vector_float * v);
+int gsl_sort_vector_float_largest (float * dest, const size_t k, const gsl_vector_float * v);
+
+int gsl_sort_vector_float_smallest_index (size_t * p, const size_t k, const gsl_vector_float * v);
+int gsl_sort_vector_float_largest_index (size_t * p, const size_t k, const gsl_vector_float * v);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_VECTOR_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_vector_int.h b/util/X86LINUX64/include/gsl/gsl_sort_vector_int.h
new file mode 100644 (file)
index 0000000..4ac5a5d
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_vector_int.h
@@ -0,0 +1,51 @@
+/* sort/gsl_sort_vector_int.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_VECTOR_INT_H__
+#define __GSL_SORT_VECTOR_INT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_int.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_vector_int (gsl_vector_int * v);
+int gsl_sort_vector_int_index (gsl_permutation * p, const gsl_vector_int * v);
+
+int gsl_sort_vector_int_smallest (int * dest, const size_t k, const gsl_vector_int * v);
+int gsl_sort_vector_int_largest (int * dest, const size_t k, const gsl_vector_int * v);
+
+int gsl_sort_vector_int_smallest_index (size_t * p, const size_t k, const gsl_vector_int * v);
+int gsl_sort_vector_int_largest_index (size_t * p, const size_t k, const gsl_vector_int * v);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_VECTOR_INT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_vector_long.h b/util/X86LINUX64/include/gsl/gsl_sort_vector_long.h
new file mode 100644 (file)
index 0000000..6ccb21c
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_vector_long.h
@@ -0,0 +1,51 @@
+/* sort/gsl_sort_vector_long.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_VECTOR_LONG_H__
+#define __GSL_SORT_VECTOR_LONG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_long.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_vector_long (gsl_vector_long * v);
+int gsl_sort_vector_long_index (gsl_permutation * p, const gsl_vector_long * v);
+
+int gsl_sort_vector_long_smallest (long * dest, const size_t k, const gsl_vector_long * v);
+int gsl_sort_vector_long_largest (long * dest, const size_t k, const gsl_vector_long * v);
+
+int gsl_sort_vector_long_smallest_index (size_t * p, const size_t k, const gsl_vector_long * v);
+int gsl_sort_vector_long_largest_index (size_t * p, const size_t k, const gsl_vector_long * v);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_VECTOR_LONG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_vector_long_double.h b/util/X86LINUX64/include/gsl/gsl_sort_vector_long_double.h
new file mode 100644 (file)
index 0000000..3f12ca6
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_vector_long_double.h
@@ -0,0 +1,51 @@
+/* sort/gsl_sort_vector_long_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_VECTOR_LONG_DOUBLE_H__
+#define __GSL_SORT_VECTOR_LONG_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_long_double.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_vector_long_double (gsl_vector_long_double * v);
+int gsl_sort_vector_long_double_index (gsl_permutation * p, const gsl_vector_long_double * v);
+
+int gsl_sort_vector_long_double_smallest (long double * dest, const size_t k, const gsl_vector_long_double * v);
+int gsl_sort_vector_long_double_largest (long double * dest, const size_t k, const gsl_vector_long_double * v);
+
+int gsl_sort_vector_long_double_smallest_index (size_t * p, const size_t k, const gsl_vector_long_double * v);
+int gsl_sort_vector_long_double_largest_index (size_t * p, const size_t k, const gsl_vector_long_double * v);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_VECTOR_LONG_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_vector_short.h b/util/X86LINUX64/include/gsl/gsl_sort_vector_short.h
new file mode 100644 (file)
index 0000000..b55e2e4
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_vector_short.h
@@ -0,0 +1,51 @@
+/* sort/gsl_sort_vector_short.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_VECTOR_SHORT_H__
+#define __GSL_SORT_VECTOR_SHORT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_short.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_vector_short (gsl_vector_short * v);
+int gsl_sort_vector_short_index (gsl_permutation * p, const gsl_vector_short * v);
+
+int gsl_sort_vector_short_smallest (short * dest, const size_t k, const gsl_vector_short * v);
+int gsl_sort_vector_short_largest (short * dest, const size_t k, const gsl_vector_short * v);
+
+int gsl_sort_vector_short_smallest_index (size_t * p, const size_t k, const gsl_vector_short * v);
+int gsl_sort_vector_short_largest_index (size_t * p, const size_t k, const gsl_vector_short * v);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_VECTOR_SHORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_vector_uchar.h b/util/X86LINUX64/include/gsl/gsl_sort_vector_uchar.h
new file mode 100644 (file)
index 0000000..4209e15
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_vector_uchar.h
@@ -0,0 +1,51 @@
+/* sort/gsl_sort_vector_uchar.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_VECTOR_UCHAR_H__
+#define __GSL_SORT_VECTOR_UCHAR_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_uchar.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_vector_uchar (gsl_vector_uchar * v);
+int gsl_sort_vector_uchar_index (gsl_permutation * p, const gsl_vector_uchar * v);
+
+int gsl_sort_vector_uchar_smallest (unsigned char * dest, const size_t k, const gsl_vector_uchar * v);
+int gsl_sort_vector_uchar_largest (unsigned char * dest, const size_t k, const gsl_vector_uchar * v);
+
+int gsl_sort_vector_uchar_smallest_index (size_t * p, const size_t k, const gsl_vector_uchar * v);
+int gsl_sort_vector_uchar_largest_index (size_t * p, const size_t k, const gsl_vector_uchar * v);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_VECTOR_UCHAR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_vector_uint.h b/util/X86LINUX64/include/gsl/gsl_sort_vector_uint.h
new file mode 100644 (file)
index 0000000..4c2caa2
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_vector_uint.h
@@ -0,0 +1,51 @@
+/* sort/gsl_sort_vector_uint.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_VECTOR_UINT_H__
+#define __GSL_SORT_VECTOR_UINT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_uint.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_vector_uint (gsl_vector_uint * v);
+int gsl_sort_vector_uint_index (gsl_permutation * p, const gsl_vector_uint * v);
+
+int gsl_sort_vector_uint_smallest (unsigned int * dest, const size_t k, const gsl_vector_uint * v);
+int gsl_sort_vector_uint_largest (unsigned int * dest, const size_t k, const gsl_vector_uint * v);
+
+int gsl_sort_vector_uint_smallest_index (size_t * p, const size_t k, const gsl_vector_uint * v);
+int gsl_sort_vector_uint_largest_index (size_t * p, const size_t k, const gsl_vector_uint * v);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_VECTOR_UINT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_vector_ulong.h b/util/X86LINUX64/include/gsl/gsl_sort_vector_ulong.h
new file mode 100644 (file)
index 0000000..e61446a
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_vector_ulong.h
@@ -0,0 +1,51 @@
+/* sort/gsl_sort_vector_ulong.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_VECTOR_ULONG_H__
+#define __GSL_SORT_VECTOR_ULONG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_ulong.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_vector_ulong (gsl_vector_ulong * v);
+int gsl_sort_vector_ulong_index (gsl_permutation * p, const gsl_vector_ulong * v);
+
+int gsl_sort_vector_ulong_smallest (unsigned long * dest, const size_t k, const gsl_vector_ulong * v);
+int gsl_sort_vector_ulong_largest (unsigned long * dest, const size_t k, const gsl_vector_ulong * v);
+
+int gsl_sort_vector_ulong_smallest_index (size_t * p, const size_t k, const gsl_vector_ulong * v);
+int gsl_sort_vector_ulong_largest_index (size_t * p, const size_t k, const gsl_vector_ulong * v);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_VECTOR_ULONG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sort_vector_ushort.h b/util/X86LINUX64/include/gsl/gsl_sort_vector_ushort.h
new file mode 100644 (file)
index 0000000..c3776dc
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sort_vector_ushort.h
@@ -0,0 +1,51 @@
+/* sort/gsl_sort_vector_ushort.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Thomas Walter, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SORT_VECTOR_USHORT_H__
+#define __GSL_SORT_VECTOR_USHORT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_vector_ushort.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void gsl_sort_vector_ushort (gsl_vector_ushort * v);
+int gsl_sort_vector_ushort_index (gsl_permutation * p, const gsl_vector_ushort * v);
+
+int gsl_sort_vector_ushort_smallest (unsigned short * dest, const size_t k, const gsl_vector_ushort * v);
+int gsl_sort_vector_ushort_largest (unsigned short * dest, const size_t k, const gsl_vector_ushort * v);
+
+int gsl_sort_vector_ushort_smallest_index (size_t * p, const size_t k, const gsl_vector_ushort * v);
+int gsl_sort_vector_ushort_largest_index (size_t * p, const size_t k, const gsl_vector_ushort * v);
+
+__END_DECLS
+
+#endif /* __GSL_SORT_VECTOR_USHORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_specfunc.h b/util/X86LINUX64/include/gsl/gsl_specfunc.h
new file mode 100644 (file)
index 0000000..e07b5aa
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_specfunc.h
@@ -0,0 +1,10 @@
+/* Author:  G. Jungman */
+
+        
+/* Convenience header */
+#ifndef __GSL_SPECFUNC_H__
+#define __GSL_SPECFUNC_H__
+
+#include <gsl/gsl_sf.h>
+
+#endif /* __GSL_SPECFUNC_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_spline.h b/util/X86LINUX64/include/gsl/gsl_spline.h
new file mode 100644 (file)
index 0000000..08255ca
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_spline.h
@@ -0,0 +1,101 @@
+/* interpolation/gsl_spline.h
+ * 
+ * Copyright (C) 2001, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SPLINE_H__
+#define __GSL_SPLINE_H__
+#include <stdlib.h>
+#include <gsl/gsl_interp.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+
+/* general interpolation object */
+typedef struct {
+  gsl_interp * interp;
+  double  * x;
+  double  * y;
+  size_t  size;
+} gsl_spline;
+
+gsl_spline *
+gsl_spline_alloc(const gsl_interp_type * T, size_t size);
+     
+int
+gsl_spline_init(gsl_spline * spline, const double xa[], const double ya[], size_t size);
+
+const char * gsl_spline_name(const gsl_spline * spline);
+unsigned int gsl_spline_min_size(const gsl_spline * spline);
+
+
+int
+gsl_spline_eval_e(const gsl_spline * spline, double x,
+                  gsl_interp_accel * a, double * y);
+
+double
+gsl_spline_eval(const gsl_spline * spline, double x, gsl_interp_accel * a);
+
+int
+gsl_spline_eval_deriv_e(const gsl_spline * spline,
+                        double x,
+                        gsl_interp_accel * a,
+                        double * y);
+
+double
+gsl_spline_eval_deriv(const gsl_spline * spline,
+                      double x,
+                      gsl_interp_accel * a);
+
+int
+gsl_spline_eval_deriv2_e(const gsl_spline * spline,
+                         double x,
+                         gsl_interp_accel * a,
+                         double * y);
+
+double
+gsl_spline_eval_deriv2(const gsl_spline * spline,
+                       double x,
+                       gsl_interp_accel * a);
+
+int
+gsl_spline_eval_integ_e(const gsl_spline * spline,
+                        double a, double b,
+                        gsl_interp_accel * acc,
+                        double * y);
+
+double
+gsl_spline_eval_integ(const gsl_spline * spline,
+                      double a, double b,
+                      gsl_interp_accel * acc);
+
+void
+gsl_spline_free(gsl_spline * spline);
+
+__END_DECLS
+
+#endif /* __GSL_INTERP_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_statistics.h b/util/X86LINUX64/include/gsl/gsl_statistics.h
new file mode 100644 (file)
index 0000000..9fb414f
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_statistics.h
@@ -0,0 +1,20 @@
+#ifndef __GSL_STATISTICS_H__
+#define __GSL_STATISTICS_H__
+
+#include <gsl/gsl_statistics_long_double.h>
+#include <gsl/gsl_statistics_double.h>
+#include <gsl/gsl_statistics_float.h>
+
+#include <gsl/gsl_statistics_ulong.h>
+#include <gsl/gsl_statistics_long.h>
+
+#include <gsl/gsl_statistics_uint.h>
+#include <gsl/gsl_statistics_int.h>
+
+#include <gsl/gsl_statistics_ushort.h>
+#include <gsl/gsl_statistics_short.h>
+
+#include <gsl/gsl_statistics_uchar.h>
+#include <gsl/gsl_statistics_char.h>
+
+#endif /* __GSL_STATISTICS_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_statistics_char.h b/util/X86LINUX64/include/gsl/gsl_statistics_char.h
new file mode 100644 (file)
index 0000000..904c50b
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_statistics_char.h
@@ -0,0 +1,79 @@
+/* statistics/gsl_statistics_char.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Jim Davies, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_STATISTICS_CHAR_H__
+#define __GSL_STATISTICS_CHAR_H__
+
+#include <stddef.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+double gsl_stats_char_mean (const char data[], const size_t stride, const size_t n);
+double gsl_stats_char_variance (const char data[], const size_t stride, const size_t n);
+double gsl_stats_char_sd (const char data[], const size_t stride, const size_t n);
+double gsl_stats_char_variance_with_fixed_mean (const char data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_char_sd_with_fixed_mean (const char data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_char_tss (const char data[], const size_t stride, const size_t n);
+double gsl_stats_char_tss_m (const char data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_char_absdev (const char data[], const size_t stride, const size_t n);
+double gsl_stats_char_skew (const char data[], const size_t stride, const size_t n);
+double gsl_stats_char_kurtosis (const char data[], const size_t stride, const size_t n);
+double gsl_stats_char_lag1_autocorrelation (const char data[], const size_t stride, const size_t n);
+
+double gsl_stats_char_covariance (const char data1[], const size_t stride1,const char data2[], const size_t stride2, const size_t n);
+double gsl_stats_char_correlation (const char data1[], const size_t stride1,const char data2[], const size_t stride2, const size_t n);
+
+double gsl_stats_char_variance_m (const char data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_char_sd_m (const char data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_char_absdev_m (const char data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_char_skew_m_sd (const char data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_char_kurtosis_m_sd (const char data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_char_lag1_autocorrelation_m (const char data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_char_covariance_m (const char data1[], const size_t stride1,const char data2[], const size_t stride2, const size_t n, const double mean1, const double mean2);
+
+
+double gsl_stats_char_pvariance (const char data1[], const size_t stride1, const size_t n1, const char data2[], const size_t stride2, const size_t n2);
+double gsl_stats_char_ttest (const char data1[], const size_t stride1, const size_t n1, const char data2[], const size_t stride2, const size_t n2);
+
+char gsl_stats_char_max (const char data[], const size_t stride, const size_t n);
+char gsl_stats_char_min (const char data[], const size_t stride, const size_t n);
+void gsl_stats_char_minmax (char * min, char * max, const char data[], const size_t stride, const size_t n);
+
+size_t gsl_stats_char_max_index (const char data[], const size_t stride, const size_t n);
+size_t gsl_stats_char_min_index (const char data[], const size_t stride, const size_t n);
+void gsl_stats_char_minmax_index (size_t * min_index, size_t * max_index, const char data[], const size_t stride, const size_t n);
+
+double gsl_stats_char_median_from_sorted_data (const char sorted_data[], const size_t stride, const size_t n) ;
+double gsl_stats_char_quantile_from_sorted_data (const char sorted_data[], const size_t stride, const size_t n, const double f) ;
+
+__END_DECLS
+
+#endif /* __GSL_STATISTICS_CHAR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_statistics_double.h b/util/X86LINUX64/include/gsl/gsl_statistics_double.h
new file mode 100644 (file)
index 0000000..8188184
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_statistics_double.h
@@ -0,0 +1,99 @@
+/* statistics/gsl_statistics_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Jim Davies, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_STATISTICS_DOUBLE_H__
+#define __GSL_STATISTICS_DOUBLE_H__
+
+#include <stddef.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+double gsl_stats_mean (const double data[], const size_t stride, const size_t n);
+double gsl_stats_variance (const double data[], const size_t stride, const size_t n);
+double gsl_stats_sd (const double data[], const size_t stride, const size_t n);
+double gsl_stats_variance_with_fixed_mean (const double data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_sd_with_fixed_mean (const double data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_tss (const double data[], const size_t stride, const size_t n);
+double gsl_stats_tss_m (const double data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_absdev (const double data[], const size_t stride, const size_t n);
+double gsl_stats_skew (const double data[], const size_t stride, const size_t n);
+double gsl_stats_kurtosis (const double data[], const size_t stride, const size_t n);
+double gsl_stats_lag1_autocorrelation (const double data[], const size_t stride, const size_t n);
+
+double gsl_stats_covariance (const double data1[], const size_t stride1,const double data2[], const size_t stride2, const size_t n);
+double gsl_stats_correlation (const double data1[], const size_t stride1,const double data2[], const size_t stride2, const size_t n);
+
+double gsl_stats_variance_m (const double data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_sd_m (const double data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_absdev_m (const double data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_skew_m_sd (const double data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_kurtosis_m_sd (const double data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_lag1_autocorrelation_m (const double data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_covariance_m (const double data1[], const size_t stride1,const double data2[], const size_t stride2, const size_t n, const double mean1, const double mean2);
+
+/* DEFINED FOR FLOATING POINT TYPES ONLY */
+
+double gsl_stats_wmean (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n);
+double gsl_stats_wvariance (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n);
+double gsl_stats_wsd (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n);
+double gsl_stats_wvariance_with_fixed_mean (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_wsd_with_fixed_mean (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_wtss (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n);
+double gsl_stats_wtss_m (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n, const double wmean);
+double gsl_stats_wabsdev (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n);
+double gsl_stats_wskew (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n);
+double gsl_stats_wkurtosis (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n);
+
+double gsl_stats_wvariance_m (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n, const double wmean);
+double gsl_stats_wsd_m (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n, const double wmean);
+double gsl_stats_wabsdev_m (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n, const double wmean);
+double gsl_stats_wskew_m_sd (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n, const double wmean, const double wsd);
+double gsl_stats_wkurtosis_m_sd (const double w[], const size_t wstride, const double data[], const size_t stride, const size_t n, const double wmean, const double wsd);
+
+/* END OF FLOATING POINT TYPES */
+
+double gsl_stats_pvariance (const double data1[], const size_t stride1, const size_t n1, const double data2[], const size_t stride2, const size_t n2);
+double gsl_stats_ttest (const double data1[], const size_t stride1, const size_t n1, const double data2[], const size_t stride2, const size_t n2);
+
+double gsl_stats_max (const double data[], const size_t stride, const size_t n);
+double gsl_stats_min (const double data[], const size_t stride, const size_t n);
+void gsl_stats_minmax (double * min, double * max, const double data[], const size_t stride, const size_t n);
+
+size_t gsl_stats_max_index (const double data[], const size_t stride, const size_t n);
+size_t gsl_stats_min_index (const double data[], const size_t stride, const size_t n);
+void gsl_stats_minmax_index (size_t * min_index, size_t * max_index, const double data[], const size_t stride, const size_t n);
+
+double gsl_stats_median_from_sorted_data (const double sorted_data[], const size_t stride, const size_t n) ;
+double gsl_stats_quantile_from_sorted_data (const double sorted_data[], const size_t stride, const size_t n, const double f) ;
+
+__END_DECLS
+
+#endif /* __GSL_STATISTICS_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_statistics_float.h b/util/X86LINUX64/include/gsl/gsl_statistics_float.h
new file mode 100644 (file)
index 0000000..045c6ea
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_statistics_float.h
@@ -0,0 +1,99 @@
+/* statistics/gsl_statistics_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Jim Davies, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_STATISTICS_FLOAT_H__
+#define __GSL_STATISTICS_FLOAT_H__
+
+#include <stddef.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+double gsl_stats_float_mean (const float data[], const size_t stride, const size_t n);
+double gsl_stats_float_variance (const float data[], const size_t stride, const size_t n);
+double gsl_stats_float_sd (const float data[], const size_t stride, const size_t n);
+double gsl_stats_float_variance_with_fixed_mean (const float data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_float_sd_with_fixed_mean (const float data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_float_tss (const float data[], const size_t stride, const size_t n);
+double gsl_stats_float_tss_m (const float data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_float_absdev (const float data[], const size_t stride, const size_t n);
+double gsl_stats_float_skew (const float data[], const size_t stride, const size_t n);
+double gsl_stats_float_kurtosis (const float data[], const size_t stride, const size_t n);
+double gsl_stats_float_lag1_autocorrelation (const float data[], const size_t stride, const size_t n);
+
+double gsl_stats_float_covariance (const float data1[], const size_t stride1,const float data2[], const size_t stride2, const size_t n);
+double gsl_stats_float_correlation (const float data1[], const size_t stride1,const float data2[], const size_t stride2, const size_t n);
+
+double gsl_stats_float_variance_m (const float data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_float_sd_m (const float data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_float_absdev_m (const float data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_float_skew_m_sd (const float data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_float_kurtosis_m_sd (const float data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_float_lag1_autocorrelation_m (const float data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_float_covariance_m (const float data1[], const size_t stride1,const float data2[], const size_t stride2, const size_t n, const double mean1, const double mean2);
+
+/* DEFINED FOR FLOATING POINT TYPES ONLY */
+
+double gsl_stats_float_wmean (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n);
+double gsl_stats_float_wvariance (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n);
+double gsl_stats_float_wsd (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n);
+double gsl_stats_float_wvariance_with_fixed_mean (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_float_wsd_with_fixed_mean (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_float_wtss (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n);
+double gsl_stats_float_wtss_m (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n, const double wmean);
+double gsl_stats_float_wabsdev (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n);
+double gsl_stats_float_wskew (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n);
+double gsl_stats_float_wkurtosis (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n);
+
+double gsl_stats_float_wvariance_m (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n, const double wmean);
+double gsl_stats_float_wsd_m (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n, const double wmean);
+double gsl_stats_float_wabsdev_m (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n, const double wmean);
+double gsl_stats_float_wskew_m_sd (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n, const double wmean, const double wsd);
+double gsl_stats_float_wkurtosis_m_sd (const float w[], const size_t wstride, const float data[], const size_t stride, const size_t n, const double wmean, const double wsd);
+
+/* END OF FLOATING POINT TYPES */
+
+double gsl_stats_float_pvariance (const float data1[], const size_t stride1, const size_t n1, const float data2[], const size_t stride2, const size_t n2);
+double gsl_stats_float_ttest (const float data1[], const size_t stride1, const size_t n1, const float data2[], const size_t stride2, const size_t n2);
+
+float gsl_stats_float_max (const float data[], const size_t stride, const size_t n);
+float gsl_stats_float_min (const float data[], const size_t stride, const size_t n);
+void gsl_stats_float_minmax (float * min, float * max, const float data[], const size_t stride, const size_t n);
+
+size_t gsl_stats_float_max_index (const float data[], const size_t stride, const size_t n);
+size_t gsl_stats_float_min_index (const float data[], const size_t stride, const size_t n);
+void gsl_stats_float_minmax_index (size_t * min_index, size_t * max_index, const float data[], const size_t stride, const size_t n);
+
+double gsl_stats_float_median_from_sorted_data (const float sorted_data[], const size_t stride, const size_t n) ;
+double gsl_stats_float_quantile_from_sorted_data (const float sorted_data[], const size_t stride, const size_t n, const double f) ;
+
+__END_DECLS
+
+#endif /* __GSL_STATISTICS_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_statistics_int.h b/util/X86LINUX64/include/gsl/gsl_statistics_int.h
new file mode 100644 (file)
index 0000000..be20704
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_statistics_int.h
@@ -0,0 +1,79 @@
+/* statistics/gsl_statistics_int.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Jim Davies, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_STATISTICS_INT_H__
+#define __GSL_STATISTICS_INT_H__
+
+#include <stddef.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+double gsl_stats_int_mean (const int data[], const size_t stride, const size_t n);
+double gsl_stats_int_variance (const int data[], const size_t stride, const size_t n);
+double gsl_stats_int_sd (const int data[], const size_t stride, const size_t n);
+double gsl_stats_int_variance_with_fixed_mean (const int data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_int_sd_with_fixed_mean (const int data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_int_tss (const int data[], const size_t stride, const size_t n);
+double gsl_stats_int_tss_m (const int data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_int_absdev (const int data[], const size_t stride, const size_t n);
+double gsl_stats_int_skew (const int data[], const size_t stride, const size_t n);
+double gsl_stats_int_kurtosis (const int data[], const size_t stride, const size_t n);
+double gsl_stats_int_lag1_autocorrelation (const int data[], const size_t stride, const size_t n);
+
+double gsl_stats_int_covariance (const int data1[], const size_t stride1,const int data2[], const size_t stride2, const size_t n);
+double gsl_stats_int_correlation (const int data1[], const size_t stride1,const int data2[], const size_t stride2, const size_t n);
+
+double gsl_stats_int_variance_m (const int data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_int_sd_m (const int data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_int_absdev_m (const int data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_int_skew_m_sd (const int data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_int_kurtosis_m_sd (const int data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_int_lag1_autocorrelation_m (const int data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_int_covariance_m (const int data1[], const size_t stride1,const int data2[], const size_t stride2, const size_t n, const double mean1, const double mean2);
+
+
+double gsl_stats_int_pvariance (const int data1[], const size_t stride1, const size_t n1, const int data2[], const size_t stride2, const size_t n2);
+double gsl_stats_int_ttest (const int data1[], const size_t stride1, const size_t n1, const int data2[], const size_t stride2, const size_t n2);
+
+int gsl_stats_int_max (const int data[], const size_t stride, const size_t n);
+int gsl_stats_int_min (const int data[], const size_t stride, const size_t n);
+void gsl_stats_int_minmax (int * min, int * max, const int data[], const size_t stride, const size_t n);
+
+size_t gsl_stats_int_max_index (const int data[], const size_t stride, const size_t n);
+size_t gsl_stats_int_min_index (const int data[], const size_t stride, const size_t n);
+void gsl_stats_int_minmax_index (size_t * min_index, size_t * max_index, const int data[], const size_t stride, const size_t n);
+
+double gsl_stats_int_median_from_sorted_data (const int sorted_data[], const size_t stride, const size_t n) ;
+double gsl_stats_int_quantile_from_sorted_data (const int sorted_data[], const size_t stride, const size_t n, const double f) ;
+
+__END_DECLS
+
+#endif /* __GSL_STATISTICS_INT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_statistics_long.h b/util/X86LINUX64/include/gsl/gsl_statistics_long.h
new file mode 100644 (file)
index 0000000..263eb2b
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_statistics_long.h
@@ -0,0 +1,79 @@
+/* statistics/gsl_statistics_long.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Jim Davies, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_STATISTICS_LONG_H__
+#define __GSL_STATISTICS_LONG_H__
+
+#include <stddef.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+double gsl_stats_long_mean (const long data[], const size_t stride, const size_t n);
+double gsl_stats_long_variance (const long data[], const size_t stride, const size_t n);
+double gsl_stats_long_sd (const long data[], const size_t stride, const size_t n);
+double gsl_stats_long_variance_with_fixed_mean (const long data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_long_sd_with_fixed_mean (const long data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_long_tss (const long data[], const size_t stride, const size_t n);
+double gsl_stats_long_tss_m (const long data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_long_absdev (const long data[], const size_t stride, const size_t n);
+double gsl_stats_long_skew (const long data[], const size_t stride, const size_t n);
+double gsl_stats_long_kurtosis (const long data[], const size_t stride, const size_t n);
+double gsl_stats_long_lag1_autocorrelation (const long data[], const size_t stride, const size_t n);
+
+double gsl_stats_long_covariance (const long data1[], const size_t stride1,const long data2[], const size_t stride2, const size_t n);
+double gsl_stats_long_correlation (const long data1[], const size_t stride1,const long data2[], const size_t stride2, const size_t n);
+
+double gsl_stats_long_variance_m (const long data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_long_sd_m (const long data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_long_absdev_m (const long data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_long_skew_m_sd (const long data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_long_kurtosis_m_sd (const long data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_long_lag1_autocorrelation_m (const long data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_long_covariance_m (const long data1[], const size_t stride1,const long data2[], const size_t stride2, const size_t n, const double mean1, const double mean2);
+
+
+double gsl_stats_long_pvariance (const long data1[], const size_t stride1, const size_t n1, const long data2[], const size_t stride2, const size_t n2);
+double gsl_stats_long_ttest (const long data1[], const size_t stride1, const size_t n1, const long data2[], const size_t stride2, const size_t n2);
+
+long gsl_stats_long_max (const long data[], const size_t stride, const size_t n);
+long gsl_stats_long_min (const long data[], const size_t stride, const size_t n);
+void gsl_stats_long_minmax (long * min, long * max, const long data[], const size_t stride, const size_t n);
+
+size_t gsl_stats_long_max_index (const long data[], const size_t stride, const size_t n);
+size_t gsl_stats_long_min_index (const long data[], const size_t stride, const size_t n);
+void gsl_stats_long_minmax_index (size_t * min_index, size_t * max_index, const long data[], const size_t stride, const size_t n);
+
+double gsl_stats_long_median_from_sorted_data (const long sorted_data[], const size_t stride, const size_t n) ;
+double gsl_stats_long_quantile_from_sorted_data (const long sorted_data[], const size_t stride, const size_t n, const double f) ;
+
+__END_DECLS
+
+#endif /* __GSL_STATISTICS_LONG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_statistics_long_double.h b/util/X86LINUX64/include/gsl/gsl_statistics_long_double.h
new file mode 100644 (file)
index 0000000..dd07645
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_statistics_long_double.h
@@ -0,0 +1,99 @@
+/* statistics/gsl_statistics_long_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Jim Davies, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_STATISTICS_LONG_DOUBLE_H__
+#define __GSL_STATISTICS_LONG_DOUBLE_H__
+
+#include <stddef.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+double gsl_stats_long_double_mean (const long double data[], const size_t stride, const size_t n);
+double gsl_stats_long_double_variance (const long double data[], const size_t stride, const size_t n);
+double gsl_stats_long_double_sd (const long double data[], const size_t stride, const size_t n);
+double gsl_stats_long_double_variance_with_fixed_mean (const long double data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_long_double_sd_with_fixed_mean (const long double data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_long_double_tss (const long double data[], const size_t stride, const size_t n);
+double gsl_stats_long_double_tss_m (const long double data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_long_double_absdev (const long double data[], const size_t stride, const size_t n);
+double gsl_stats_long_double_skew (const long double data[], const size_t stride, const size_t n);
+double gsl_stats_long_double_kurtosis (const long double data[], const size_t stride, const size_t n);
+double gsl_stats_long_double_lag1_autocorrelation (const long double data[], const size_t stride, const size_t n);
+
+double gsl_stats_long_double_covariance (const long double data1[], const size_t stride1,const long double data2[], const size_t stride2, const size_t n);
+double gsl_stats_long_double_correlation (const long double data1[], const size_t stride1,const long double data2[], const size_t stride2, const size_t n);
+
+double gsl_stats_long_double_variance_m (const long double data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_long_double_sd_m (const long double data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_long_double_absdev_m (const long double data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_long_double_skew_m_sd (const long double data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_long_double_kurtosis_m_sd (const long double data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_long_double_lag1_autocorrelation_m (const long double data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_long_double_covariance_m (const long double data1[], const size_t stride1,const long double data2[], const size_t stride2, const size_t n, const double mean1, const double mean2);
+
+/* DEFINED FOR FLOATING POINT TYPES ONLY */
+
+double gsl_stats_long_double_wmean (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n);
+double gsl_stats_long_double_wvariance (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n);
+double gsl_stats_long_double_wsd (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n);
+double gsl_stats_long_double_wvariance_with_fixed_mean (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_long_double_wsd_with_fixed_mean (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_long_double_wtss (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n);
+double gsl_stats_long_double_wtss_m (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n, const double wmean);
+double gsl_stats_long_double_wabsdev (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n);
+double gsl_stats_long_double_wskew (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n);
+double gsl_stats_long_double_wkurtosis (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n);
+
+double gsl_stats_long_double_wvariance_m (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n, const double wmean);
+double gsl_stats_long_double_wsd_m (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n, const double wmean);
+double gsl_stats_long_double_wabsdev_m (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n, const double wmean);
+double gsl_stats_long_double_wskew_m_sd (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n, const double wmean, const double wsd);
+double gsl_stats_long_double_wkurtosis_m_sd (const long double w[], const size_t wstride, const long double data[], const size_t stride, const size_t n, const double wmean, const double wsd);
+
+/* END OF FLOATING POINT TYPES */
+
+double gsl_stats_long_double_pvariance (const long double data1[], const size_t stride1, const size_t n1, const long double data2[], const size_t stride2, const size_t n2);
+double gsl_stats_long_double_ttest (const long double data1[], const size_t stride1, const size_t n1, const long double data2[], const size_t stride2, const size_t n2);
+
+long double gsl_stats_long_double_max (const long double data[], const size_t stride, const size_t n);
+long double gsl_stats_long_double_min (const long double data[], const size_t stride, const size_t n);
+void gsl_stats_long_double_minmax (long double * min, long double * max, const long double data[], const size_t stride, const size_t n);
+
+size_t gsl_stats_long_double_max_index (const long double data[], const size_t stride, const size_t n);
+size_t gsl_stats_long_double_min_index (const long double data[], const size_t stride, const size_t n);
+void gsl_stats_long_double_minmax_index (size_t * min_index, size_t * max_index, const long double data[], const size_t stride, const size_t n);
+
+double gsl_stats_long_double_median_from_sorted_data (const long double sorted_data[], const size_t stride, const size_t n) ;
+double gsl_stats_long_double_quantile_from_sorted_data (const long double sorted_data[], const size_t stride, const size_t n, const double f) ;
+
+__END_DECLS
+
+#endif /* __GSL_STATISTICS_LONG_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_statistics_short.h b/util/X86LINUX64/include/gsl/gsl_statistics_short.h
new file mode 100644 (file)
index 0000000..9207147
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_statistics_short.h
@@ -0,0 +1,79 @@
+/* statistics/gsl_statistics_short.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Jim Davies, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_STATISTICS_SHORT_H__
+#define __GSL_STATISTICS_SHORT_H__
+
+#include <stddef.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+double gsl_stats_short_mean (const short data[], const size_t stride, const size_t n);
+double gsl_stats_short_variance (const short data[], const size_t stride, const size_t n);
+double gsl_stats_short_sd (const short data[], const size_t stride, const size_t n);
+double gsl_stats_short_variance_with_fixed_mean (const short data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_short_sd_with_fixed_mean (const short data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_short_tss (const short data[], const size_t stride, const size_t n);
+double gsl_stats_short_tss_m (const short data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_short_absdev (const short data[], const size_t stride, const size_t n);
+double gsl_stats_short_skew (const short data[], const size_t stride, const size_t n);
+double gsl_stats_short_kurtosis (const short data[], const size_t stride, const size_t n);
+double gsl_stats_short_lag1_autocorrelation (const short data[], const size_t stride, const size_t n);
+
+double gsl_stats_short_covariance (const short data1[], const size_t stride1,const short data2[], const size_t stride2, const size_t n);
+double gsl_stats_short_correlation (const short data1[], const size_t stride1,const short data2[], const size_t stride2, const size_t n);
+
+double gsl_stats_short_variance_m (const short data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_short_sd_m (const short data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_short_absdev_m (const short data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_short_skew_m_sd (const short data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_short_kurtosis_m_sd (const short data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_short_lag1_autocorrelation_m (const short data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_short_covariance_m (const short data1[], const size_t stride1,const short data2[], const size_t stride2, const size_t n, const double mean1, const double mean2);
+
+
+double gsl_stats_short_pvariance (const short data1[], const size_t stride1, const size_t n1, const short data2[], const size_t stride2, const size_t n2);
+double gsl_stats_short_ttest (const short data1[], const size_t stride1, const size_t n1, const short data2[], const size_t stride2, const size_t n2);
+
+short gsl_stats_short_max (const short data[], const size_t stride, const size_t n);
+short gsl_stats_short_min (const short data[], const size_t stride, const size_t n);
+void gsl_stats_short_minmax (short * min, short * max, const short data[], const size_t stride, const size_t n);
+
+size_t gsl_stats_short_max_index (const short data[], const size_t stride, const size_t n);
+size_t gsl_stats_short_min_index (const short data[], const size_t stride, const size_t n);
+void gsl_stats_short_minmax_index (size_t * min_index, size_t * max_index, const short data[], const size_t stride, const size_t n);
+
+double gsl_stats_short_median_from_sorted_data (const short sorted_data[], const size_t stride, const size_t n) ;
+double gsl_stats_short_quantile_from_sorted_data (const short sorted_data[], const size_t stride, const size_t n, const double f) ;
+
+__END_DECLS
+
+#endif /* __GSL_STATISTICS_SHORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_statistics_uchar.h b/util/X86LINUX64/include/gsl/gsl_statistics_uchar.h
new file mode 100644 (file)
index 0000000..601ff4c
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_statistics_uchar.h
@@ -0,0 +1,79 @@
+/* statistics/gsl_statistics_uchar.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Jim Davies, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_STATISTICS_UCHAR_H__
+#define __GSL_STATISTICS_UCHAR_H__
+
+#include <stddef.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+double gsl_stats_uchar_mean (const unsigned char data[], const size_t stride, const size_t n);
+double gsl_stats_uchar_variance (const unsigned char data[], const size_t stride, const size_t n);
+double gsl_stats_uchar_sd (const unsigned char data[], const size_t stride, const size_t n);
+double gsl_stats_uchar_variance_with_fixed_mean (const unsigned char data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_uchar_sd_with_fixed_mean (const unsigned char data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_uchar_tss (const unsigned char data[], const size_t stride, const size_t n);
+double gsl_stats_uchar_tss_m (const unsigned char data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_uchar_absdev (const unsigned char data[], const size_t stride, const size_t n);
+double gsl_stats_uchar_skew (const unsigned char data[], const size_t stride, const size_t n);
+double gsl_stats_uchar_kurtosis (const unsigned char data[], const size_t stride, const size_t n);
+double gsl_stats_uchar_lag1_autocorrelation (const unsigned char data[], const size_t stride, const size_t n);
+
+double gsl_stats_uchar_covariance (const unsigned char data1[], const size_t stride1,const unsigned char data2[], const size_t stride2, const size_t n);
+double gsl_stats_uchar_correlation (const unsigned char data1[], const size_t stride1,const unsigned char data2[], const size_t stride2, const size_t n);
+
+double gsl_stats_uchar_variance_m (const unsigned char data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_uchar_sd_m (const unsigned char data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_uchar_absdev_m (const unsigned char data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_uchar_skew_m_sd (const unsigned char data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_uchar_kurtosis_m_sd (const unsigned char data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_uchar_lag1_autocorrelation_m (const unsigned char data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_uchar_covariance_m (const unsigned char data1[], const size_t stride1,const unsigned char data2[], const size_t stride2, const size_t n, const double mean1, const double mean2);
+
+
+double gsl_stats_uchar_pvariance (const unsigned char data1[], const size_t stride1, const size_t n1, const unsigned char data2[], const size_t stride2, const size_t n2);
+double gsl_stats_uchar_ttest (const unsigned char data1[], const size_t stride1, const size_t n1, const unsigned char data2[], const size_t stride2, const size_t n2);
+
+unsigned char gsl_stats_uchar_max (const unsigned char data[], const size_t stride, const size_t n);
+unsigned char gsl_stats_uchar_min (const unsigned char data[], const size_t stride, const size_t n);
+void gsl_stats_uchar_minmax (unsigned char * min, unsigned char * max, const unsigned char data[], const size_t stride, const size_t n);
+
+size_t gsl_stats_uchar_max_index (const unsigned char data[], const size_t stride, const size_t n);
+size_t gsl_stats_uchar_min_index (const unsigned char data[], const size_t stride, const size_t n);
+void gsl_stats_uchar_minmax_index (size_t * min_index, size_t * max_index, const unsigned char data[], const size_t stride, const size_t n);
+
+double gsl_stats_uchar_median_from_sorted_data (const unsigned char sorted_data[], const size_t stride, const size_t n) ;
+double gsl_stats_uchar_quantile_from_sorted_data (const unsigned char sorted_data[], const size_t stride, const size_t n, const double f) ;
+
+__END_DECLS
+
+#endif /* __GSL_STATISTICS_UCHAR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_statistics_uint.h b/util/X86LINUX64/include/gsl/gsl_statistics_uint.h
new file mode 100644 (file)
index 0000000..3f4bd38
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_statistics_uint.h
@@ -0,0 +1,79 @@
+/* statistics/gsl_statistics_uint.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Jim Davies, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_STATISTICS_UINT_H__
+#define __GSL_STATISTICS_UINT_H__
+
+#include <stddef.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+double gsl_stats_uint_mean (const unsigned int data[], const size_t stride, const size_t n);
+double gsl_stats_uint_variance (const unsigned int data[], const size_t stride, const size_t n);
+double gsl_stats_uint_sd (const unsigned int data[], const size_t stride, const size_t n);
+double gsl_stats_uint_variance_with_fixed_mean (const unsigned int data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_uint_sd_with_fixed_mean (const unsigned int data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_uint_tss (const unsigned int data[], const size_t stride, const size_t n);
+double gsl_stats_uint_tss_m (const unsigned int data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_uint_absdev (const unsigned int data[], const size_t stride, const size_t n);
+double gsl_stats_uint_skew (const unsigned int data[], const size_t stride, const size_t n);
+double gsl_stats_uint_kurtosis (const unsigned int data[], const size_t stride, const size_t n);
+double gsl_stats_uint_lag1_autocorrelation (const unsigned int data[], const size_t stride, const size_t n);
+
+double gsl_stats_uint_covariance (const unsigned int data1[], const size_t stride1,const unsigned int data2[], const size_t stride2, const size_t n);
+double gsl_stats_uint_correlation (const unsigned int data1[], const size_t stride1,const unsigned int data2[], const size_t stride2, const size_t n);
+
+double gsl_stats_uint_variance_m (const unsigned int data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_uint_sd_m (const unsigned int data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_uint_absdev_m (const unsigned int data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_uint_skew_m_sd (const unsigned int data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_uint_kurtosis_m_sd (const unsigned int data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_uint_lag1_autocorrelation_m (const unsigned int data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_uint_covariance_m (const unsigned int data1[], const size_t stride1,const unsigned int data2[], const size_t stride2, const size_t n, const double mean1, const double mean2);
+
+
+double gsl_stats_uint_pvariance (const unsigned int data1[], const size_t stride1, const size_t n1, const unsigned int data2[], const size_t stride2, const size_t n2);
+double gsl_stats_uint_ttest (const unsigned int data1[], const size_t stride1, const size_t n1, const unsigned int data2[], const size_t stride2, const size_t n2);
+
+unsigned int gsl_stats_uint_max (const unsigned int data[], const size_t stride, const size_t n);
+unsigned int gsl_stats_uint_min (const unsigned int data[], const size_t stride, const size_t n);
+void gsl_stats_uint_minmax (unsigned int * min, unsigned int * max, const unsigned int data[], const size_t stride, const size_t n);
+
+size_t gsl_stats_uint_max_index (const unsigned int data[], const size_t stride, const size_t n);
+size_t gsl_stats_uint_min_index (const unsigned int data[], const size_t stride, const size_t n);
+void gsl_stats_uint_minmax_index (size_t * min_index, size_t * max_index, const unsigned int data[], const size_t stride, const size_t n);
+
+double gsl_stats_uint_median_from_sorted_data (const unsigned int sorted_data[], const size_t stride, const size_t n) ;
+double gsl_stats_uint_quantile_from_sorted_data (const unsigned int sorted_data[], const size_t stride, const size_t n, const double f) ;
+
+__END_DECLS
+
+#endif /* __GSL_STATISTICS_UINT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_statistics_ulong.h b/util/X86LINUX64/include/gsl/gsl_statistics_ulong.h
new file mode 100644 (file)
index 0000000..f45cfad
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_statistics_ulong.h
@@ -0,0 +1,79 @@
+/* statistics/gsl_statistics_ulong.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Jim Davies, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_STATISTICS_ULONG_H__
+#define __GSL_STATISTICS_ULONG_H__
+
+#include <stddef.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+double gsl_stats_ulong_mean (const unsigned long data[], const size_t stride, const size_t n);
+double gsl_stats_ulong_variance (const unsigned long data[], const size_t stride, const size_t n);
+double gsl_stats_ulong_sd (const unsigned long data[], const size_t stride, const size_t n);
+double gsl_stats_ulong_variance_with_fixed_mean (const unsigned long data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_ulong_sd_with_fixed_mean (const unsigned long data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_ulong_tss (const unsigned long data[], const size_t stride, const size_t n);
+double gsl_stats_ulong_tss_m (const unsigned long data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_ulong_absdev (const unsigned long data[], const size_t stride, const size_t n);
+double gsl_stats_ulong_skew (const unsigned long data[], const size_t stride, const size_t n);
+double gsl_stats_ulong_kurtosis (const unsigned long data[], const size_t stride, const size_t n);
+double gsl_stats_ulong_lag1_autocorrelation (const unsigned long data[], const size_t stride, const size_t n);
+
+double gsl_stats_ulong_covariance (const unsigned long data1[], const size_t stride1,const unsigned long data2[], const size_t stride2, const size_t n);
+double gsl_stats_ulong_correlation (const unsigned long data1[], const size_t stride1,const unsigned long data2[], const size_t stride2, const size_t n);
+
+double gsl_stats_ulong_variance_m (const unsigned long data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_ulong_sd_m (const unsigned long data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_ulong_absdev_m (const unsigned long data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_ulong_skew_m_sd (const unsigned long data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_ulong_kurtosis_m_sd (const unsigned long data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_ulong_lag1_autocorrelation_m (const unsigned long data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_ulong_covariance_m (const unsigned long data1[], const size_t stride1,const unsigned long data2[], const size_t stride2, const size_t n, const double mean1, const double mean2);
+
+
+double gsl_stats_ulong_pvariance (const unsigned long data1[], const size_t stride1, const size_t n1, const unsigned long data2[], const size_t stride2, const size_t n2);
+double gsl_stats_ulong_ttest (const unsigned long data1[], const size_t stride1, const size_t n1, const unsigned long data2[], const size_t stride2, const size_t n2);
+
+unsigned long gsl_stats_ulong_max (const unsigned long data[], const size_t stride, const size_t n);
+unsigned long gsl_stats_ulong_min (const unsigned long data[], const size_t stride, const size_t n);
+void gsl_stats_ulong_minmax (unsigned long * min, unsigned long * max, const unsigned long data[], const size_t stride, const size_t n);
+
+size_t gsl_stats_ulong_max_index (const unsigned long data[], const size_t stride, const size_t n);
+size_t gsl_stats_ulong_min_index (const unsigned long data[], const size_t stride, const size_t n);
+void gsl_stats_ulong_minmax_index (size_t * min_index, size_t * max_index, const unsigned long data[], const size_t stride, const size_t n);
+
+double gsl_stats_ulong_median_from_sorted_data (const unsigned long sorted_data[], const size_t stride, const size_t n) ;
+double gsl_stats_ulong_quantile_from_sorted_data (const unsigned long sorted_data[], const size_t stride, const size_t n, const double f) ;
+
+__END_DECLS
+
+#endif /* __GSL_STATISTICS_ULONG_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_statistics_ushort.h b/util/X86LINUX64/include/gsl/gsl_statistics_ushort.h
new file mode 100644 (file)
index 0000000..ad1b9f0
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_statistics_ushort.h
@@ -0,0 +1,79 @@
+/* statistics/gsl_statistics_ushort.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Jim Davies, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_STATISTICS_USHORT_H__
+#define __GSL_STATISTICS_USHORT_H__
+
+#include <stddef.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+double gsl_stats_ushort_mean (const unsigned short data[], const size_t stride, const size_t n);
+double gsl_stats_ushort_variance (const unsigned short data[], const size_t stride, const size_t n);
+double gsl_stats_ushort_sd (const unsigned short data[], const size_t stride, const size_t n);
+double gsl_stats_ushort_variance_with_fixed_mean (const unsigned short data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_ushort_sd_with_fixed_mean (const unsigned short data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_ushort_tss (const unsigned short data[], const size_t stride, const size_t n);
+double gsl_stats_ushort_tss_m (const unsigned short data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_ushort_absdev (const unsigned short data[], const size_t stride, const size_t n);
+double gsl_stats_ushort_skew (const unsigned short data[], const size_t stride, const size_t n);
+double gsl_stats_ushort_kurtosis (const unsigned short data[], const size_t stride, const size_t n);
+double gsl_stats_ushort_lag1_autocorrelation (const unsigned short data[], const size_t stride, const size_t n);
+
+double gsl_stats_ushort_covariance (const unsigned short data1[], const size_t stride1,const unsigned short data2[], const size_t stride2, const size_t n);
+double gsl_stats_ushort_correlation (const unsigned short data1[], const size_t stride1,const unsigned short data2[], const size_t stride2, const size_t n);
+
+double gsl_stats_ushort_variance_m (const unsigned short data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_ushort_sd_m (const unsigned short data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_ushort_absdev_m (const unsigned short data[], const size_t stride, const size_t n, const double mean);
+double gsl_stats_ushort_skew_m_sd (const unsigned short data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_ushort_kurtosis_m_sd (const unsigned short data[], const size_t stride, const size_t n, const double mean, const double sd);
+double gsl_stats_ushort_lag1_autocorrelation_m (const unsigned short data[], const size_t stride, const size_t n, const double mean);
+
+double gsl_stats_ushort_covariance_m (const unsigned short data1[], const size_t stride1,const unsigned short data2[], const size_t stride2, const size_t n, const double mean1, const double mean2);
+
+
+double gsl_stats_ushort_pvariance (const unsigned short data1[], const size_t stride1, const size_t n1, const unsigned short data2[], const size_t stride2, const size_t n2);
+double gsl_stats_ushort_ttest (const unsigned short data1[], const size_t stride1, const size_t n1, const unsigned short data2[], const size_t stride2, const size_t n2);
+
+unsigned short gsl_stats_ushort_max (const unsigned short data[], const size_t stride, const size_t n);
+unsigned short gsl_stats_ushort_min (const unsigned short data[], const size_t stride, const size_t n);
+void gsl_stats_ushort_minmax (unsigned short * min, unsigned short * max, const unsigned short data[], const size_t stride, const size_t n);
+
+size_t gsl_stats_ushort_max_index (const unsigned short data[], const size_t stride, const size_t n);
+size_t gsl_stats_ushort_min_index (const unsigned short data[], const size_t stride, const size_t n);
+void gsl_stats_ushort_minmax_index (size_t * min_index, size_t * max_index, const unsigned short data[], const size_t stride, const size_t n);
+
+double gsl_stats_ushort_median_from_sorted_data (const unsigned short sorted_data[], const size_t stride, const size_t n) ;
+double gsl_stats_ushort_quantile_from_sorted_data (const unsigned short sorted_data[], const size_t stride, const size_t n, const double f) ;
+
+__END_DECLS
+
+#endif /* __GSL_STATISTICS_USHORT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sum.h b/util/X86LINUX64/include/gsl/gsl_sum.h
new file mode 100644 (file)
index 0000000..d9c4da8
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sum.h
@@ -0,0 +1,162 @@
+/* sum/gsl_sum.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+/* Author:  G. Jungman */
+
+
+#ifndef __GSL_SUM_H__
+#define __GSL_SUM_H__
+
+#include <stdlib.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS          /* empty */
+# define __END_DECLS            /* empty */
+#endif
+
+__BEGIN_DECLS
+
+/*  Workspace for Levin U Transform with error estimation,
+ *   
+ *   size        = number of terms the workspace can handle
+ *   sum_plain   = simple sum of series
+ *   q_num       = backward diagonal of numerator; length = size
+ *   q_den       = backward diagonal of denominator; length = size
+ *   dq_num      = table of numerator derivatives; length = size**2
+ *   dq_den      = table of denominator derivatives; length = size**2
+ *   dsum        = derivative of sum wrt term i; length = size
+ */
+
+typedef struct
+{
+  size_t size;
+  size_t i;                     /* position in array */
+  size_t terms_used;            /* number of calls */
+  double sum_plain;
+  double *q_num;
+  double *q_den;
+  double *dq_num;
+  double *dq_den;
+  double *dsum;
+}
+gsl_sum_levin_u_workspace;
+
+gsl_sum_levin_u_workspace *gsl_sum_levin_u_alloc (size_t n);
+void gsl_sum_levin_u_free (gsl_sum_levin_u_workspace * w);
+
+/* Basic Levin-u acceleration method.
+ *
+ *   array       = array of series elements
+ *   n           = size of array
+ *   sum_accel   = result of summation acceleration
+ *   err         = estimated error   
+ *
+ * See [Fessler et al., ACM TOMS 9, 346 (1983) and TOMS-602]
+ */
+
+int gsl_sum_levin_u_accel (const double *array,
+                           const size_t n,
+                           gsl_sum_levin_u_workspace * w,
+                           double *sum_accel, double *abserr);
+
+/* Basic Levin-u acceleration method with constraints on the terms
+ * used,
+ *
+ *   array       = array of series elements
+ *   n           = size of array
+ *   min_terms   = minimum number of terms to sum
+ *   max_terms   = maximum number of terms to sum
+ *   sum_accel   = result of summation acceleration
+ *   err         = estimated error   
+ *
+ * See [Fessler et al., ACM TOMS 9, 346 (1983) and TOMS-602] 
+ */
+
+int gsl_sum_levin_u_minmax (const double *array,
+                            const size_t n,
+                            const size_t min_terms,
+                            const size_t max_terms,
+                            gsl_sum_levin_u_workspace * w,
+                            double *sum_accel, double *abserr);
+
+/* Basic Levin-u step w/o reference to the array of terms.
+ * We only need to specify the value of the current term
+ * to execute the step. See TOMS-745.
+ *
+ * sum = t0 + ... + t_{n-1} + term;  term = t_{n}
+ *
+ *   term   = value of the series term to be added
+ *   n      = position of term in series (starting from 0)
+ *   sum_accel = result of summation acceleration
+ *   sum_plain = simple sum of series
+ */
+
+int
+gsl_sum_levin_u_step (const double term,
+                      const size_t n,
+                      const size_t nmax,
+                      gsl_sum_levin_u_workspace * w, 
+                      double *sum_accel);
+
+/* The following functions perform the same calculation without
+   estimating the errors. They require O(N) storage instead of O(N^2).
+   This may be useful for summing many similar series where the size
+   of the error has already been estimated reliably and is not
+   expected to change.  */
+
+typedef struct
+{
+  size_t size;
+  size_t i;                     /* position in array */
+  size_t terms_used;            /* number of calls */
+  double sum_plain;
+  double *q_num;
+  double *q_den;
+  double *dsum;
+}
+gsl_sum_levin_utrunc_workspace;
+
+gsl_sum_levin_utrunc_workspace *gsl_sum_levin_utrunc_alloc (size_t n);
+void gsl_sum_levin_utrunc_free (gsl_sum_levin_utrunc_workspace * w);
+
+int gsl_sum_levin_utrunc_accel (const double *array,
+                                const size_t n,
+                                gsl_sum_levin_utrunc_workspace * w,
+                                double *sum_accel, double *abserr_trunc);
+
+int gsl_sum_levin_utrunc_minmax (const double *array,
+                                 const size_t n,
+                                 const size_t min_terms,
+                                 const size_t max_terms,
+                                 gsl_sum_levin_utrunc_workspace * w,
+                                 double *sum_accel, double *abserr_trunc);
+
+int gsl_sum_levin_utrunc_step (const double term,
+                               const size_t n,
+                               gsl_sum_levin_utrunc_workspace * w, 
+                               double *sum_accel);
+
+__END_DECLS
+
+#endif /* __GSL_SUM_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_sys.h b/util/X86LINUX64/include/gsl/gsl_sys.h
new file mode 100644 (file)
index 0000000..25e1348
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_sys.h
@@ -0,0 +1,63 @@
+/* sys/gsl_sys.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_SYS_H__
+#define __GSL_SYS_H__
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+double gsl_log1p (const double x);
+double gsl_expm1 (const double x);
+double gsl_hypot (const double x, const double y);
+double gsl_hypot3 (const double x, const double y, const double z);
+double gsl_acosh (const double x);
+double gsl_asinh (const double x);
+double gsl_atanh (const double x);
+
+int gsl_isnan (const double x);
+int gsl_isinf (const double x);
+int gsl_finite (const double x);
+
+double gsl_nan (void);
+double gsl_posinf (void);
+double gsl_neginf (void);
+double gsl_fdiv (const double x, const double y);
+
+double gsl_coerce_double (const double x);
+float gsl_coerce_float (const float x);
+long double gsl_coerce_long_double (const long double x);
+
+double gsl_ldexp(const double x, const int e);
+double gsl_frexp(const double x, int * e);
+
+int gsl_fcmp (const double x1, const double x2, const double epsilon);
+
+__END_DECLS
+
+#endif /* __GSL_SYS_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_test.h b/util/X86LINUX64/include/gsl/gsl_test.h
new file mode 100644 (file)
index 0000000..bb86896
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_test.h
@@ -0,0 +1,66 @@
+/* err/gsl_test.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_TEST_H__
+#define __GSL_TEST_H__
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+void
+  gsl_test (int status, const char *test_description, ...);
+
+void
+gsl_test_rel (double result, double expected, double relative_error,
+              const char *test_description, ...) ;
+
+void
+gsl_test_abs (double result, double expected, double absolute_error,
+              const char *test_description, ...) ;
+
+void
+gsl_test_factor (double result, double expected, double factor,
+                 const char *test_description, ...) ;
+
+void
+gsl_test_int (int result, int expected, const char *test_description, ...) ;
+
+void
+gsl_test_str (const char * result, const char * expected, 
+              const char *test_description, ...) ;
+
+void
+  gsl_test_verbose (int verbose) ;
+
+int
+  gsl_test_summary (void) ;
+
+
+__END_DECLS
+
+#endif /* __GSL_TEST_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_types.h b/util/X86LINUX64/include/gsl/gsl_types.h
new file mode 100644 (file)
index 0000000..0330f55
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_types.h
@@ -0,0 +1,41 @@
+/* gsl_types.h
+ * 
+ * Copyright (C) 2001, 2007 Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_TYPES_H__
+#define __GSL_TYPES_H__
+
+#ifndef GSL_VAR
+
+#ifdef WIN32
+#  ifdef GSL_DLL
+#    ifdef DLL_EXPORT
+#      define GSL_VAR extern __declspec(dllexport)
+#    else
+#      define GSL_VAR extern __declspec(dllimport)
+#    endif
+#  else
+#    define GSL_VAR extern
+#  endif
+#else
+#  define GSL_VAR extern
+#endif
+
+#endif
+
+#endif /* __GSL_TYPES_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_vector.h b/util/X86LINUX64/include/gsl/gsl_vector.h
new file mode 100644 (file)
index 0000000..cf762e4
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector.h
@@ -0,0 +1,25 @@
+#ifndef __GSL_VECTOR_H__
+#define __GSL_VECTOR_H__
+
+#include <gsl/gsl_vector_complex_long_double.h>
+#include <gsl/gsl_vector_complex_double.h>
+#include <gsl/gsl_vector_complex_float.h>
+
+#include <gsl/gsl_vector_long_double.h>
+#include <gsl/gsl_vector_double.h>
+#include <gsl/gsl_vector_float.h>
+
+#include <gsl/gsl_vector_ulong.h>
+#include <gsl/gsl_vector_long.h>
+
+#include <gsl/gsl_vector_uint.h>
+#include <gsl/gsl_vector_int.h>
+
+#include <gsl/gsl_vector_ushort.h>
+#include <gsl/gsl_vector_short.h>
+
+#include <gsl/gsl_vector_uchar.h>
+#include <gsl/gsl_vector_char.h>
+
+
+#endif /* __GSL_VECTOR_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_char.h b/util/X86LINUX64/include/gsl/gsl_vector_char.h
new file mode 100644 (file)
index 0000000..ab1107d
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_char.h
@@ -0,0 +1,230 @@
+/* vector/gsl_vector_char.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_VECTOR_CHAR_H__
+#define __GSL_VECTOR_CHAR_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_block_char.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size;
+  size_t stride;
+  char *data;
+  gsl_block_char *block;
+  int owner;
+} 
+gsl_vector_char;
+
+typedef struct
+{
+  gsl_vector_char vector;
+} _gsl_vector_char_view;
+
+typedef _gsl_vector_char_view gsl_vector_char_view;
+
+typedef struct
+{
+  gsl_vector_char vector;
+} _gsl_vector_char_const_view;
+
+typedef const _gsl_vector_char_const_view gsl_vector_char_const_view;
+
+
+/* Allocation */
+
+gsl_vector_char *gsl_vector_char_alloc (const size_t n);
+gsl_vector_char *gsl_vector_char_calloc (const size_t n);
+
+gsl_vector_char *gsl_vector_char_alloc_from_block (gsl_block_char * b,
+                                                     const size_t offset, 
+                                                     const size_t n, 
+                                                     const size_t stride);
+
+gsl_vector_char *gsl_vector_char_alloc_from_vector (gsl_vector_char * v,
+                                                      const size_t offset, 
+                                                      const size_t n, 
+                                                      const size_t stride);
+
+void gsl_vector_char_free (gsl_vector_char * v);
+
+/* Views */
+
+_gsl_vector_char_view 
+gsl_vector_char_view_array (char *v, size_t n);
+
+_gsl_vector_char_view 
+gsl_vector_char_view_array_with_stride (char *base,
+                                         size_t stride,
+                                         size_t n);
+
+_gsl_vector_char_const_view 
+gsl_vector_char_const_view_array (const char *v, size_t n);
+
+_gsl_vector_char_const_view 
+gsl_vector_char_const_view_array_with_stride (const char *base,
+                                               size_t stride,
+                                               size_t n);
+
+_gsl_vector_char_view 
+gsl_vector_char_subvector (gsl_vector_char *v, 
+                            size_t i, 
+                            size_t n);
+
+_gsl_vector_char_view 
+gsl_vector_char_subvector_with_stride (gsl_vector_char *v, 
+                                        size_t i,
+                                        size_t stride,
+                                        size_t n);
+
+_gsl_vector_char_const_view 
+gsl_vector_char_const_subvector (const gsl_vector_char *v, 
+                                  size_t i, 
+                                  size_t n);
+
+_gsl_vector_char_const_view 
+gsl_vector_char_const_subvector_with_stride (const gsl_vector_char *v, 
+                                              size_t i, 
+                                              size_t stride,
+                                              size_t n);
+
+/* Operations */
+
+void gsl_vector_char_set_zero (gsl_vector_char * v);
+void gsl_vector_char_set_all (gsl_vector_char * v, char x);
+int gsl_vector_char_set_basis (gsl_vector_char * v, size_t i);
+
+int gsl_vector_char_fread (FILE * stream, gsl_vector_char * v);
+int gsl_vector_char_fwrite (FILE * stream, const gsl_vector_char * v);
+int gsl_vector_char_fscanf (FILE * stream, gsl_vector_char * v);
+int gsl_vector_char_fprintf (FILE * stream, const gsl_vector_char * v,
+                              const char *format);
+
+int gsl_vector_char_memcpy (gsl_vector_char * dest, const gsl_vector_char * src);
+
+int gsl_vector_char_reverse (gsl_vector_char * v);
+
+int gsl_vector_char_swap (gsl_vector_char * v, gsl_vector_char * w);
+int gsl_vector_char_swap_elements (gsl_vector_char * v, const size_t i, const size_t j);
+
+char gsl_vector_char_max (const gsl_vector_char * v);
+char gsl_vector_char_min (const gsl_vector_char * v);
+void gsl_vector_char_minmax (const gsl_vector_char * v, char * min_out, char * max_out);
+
+size_t gsl_vector_char_max_index (const gsl_vector_char * v);
+size_t gsl_vector_char_min_index (const gsl_vector_char * v);
+void gsl_vector_char_minmax_index (const gsl_vector_char * v, size_t * imin, size_t * imax);
+
+int gsl_vector_char_add (gsl_vector_char * a, const gsl_vector_char * b);
+int gsl_vector_char_sub (gsl_vector_char * a, const gsl_vector_char * b);
+int gsl_vector_char_mul (gsl_vector_char * a, const gsl_vector_char * b);
+int gsl_vector_char_div (gsl_vector_char * a, const gsl_vector_char * b);
+int gsl_vector_char_scale (gsl_vector_char * a, const double x);
+int gsl_vector_char_add_constant (gsl_vector_char * a, const double x);
+
+int gsl_vector_char_equal (const gsl_vector_char * u, 
+                            const gsl_vector_char * v);
+
+int gsl_vector_char_isnull (const gsl_vector_char * v);
+int gsl_vector_char_ispos (const gsl_vector_char * v);
+int gsl_vector_char_isneg (const gsl_vector_char * v);
+int gsl_vector_char_isnonneg (const gsl_vector_char * v);
+
+INLINE_DECL char gsl_vector_char_get (const gsl_vector_char * v, const size_t i);
+INLINE_DECL void gsl_vector_char_set (gsl_vector_char * v, const size_t i, char x);
+INLINE_DECL char * gsl_vector_char_ptr (gsl_vector_char * v, const size_t i);
+INLINE_DECL const char * gsl_vector_char_const_ptr (const gsl_vector_char * v, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+char
+gsl_vector_char_get (const gsl_vector_char * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, 0);
+    }
+#endif
+  return v->data[i * v->stride];
+}
+
+INLINE_FUN
+void
+gsl_vector_char_set (gsl_vector_char * v, const size_t i, char x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VOID ("index out of range", GSL_EINVAL);
+    }
+#endif
+  v->data[i * v->stride] = x;
+}
+
+INLINE_FUN
+char *
+gsl_vector_char_ptr (gsl_vector_char * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (char *) (v->data + i * v->stride);
+}
+
+INLINE_FUN
+const char *
+gsl_vector_char_const_ptr (const gsl_vector_char * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (const char *) (v->data + i * v->stride);
+}
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_VECTOR_CHAR_H__ */
+
+

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_complex.h b/util/X86LINUX64/include/gsl/gsl_vector_complex.h
new file mode 100644 (file)
index 0000000..e56d6a6
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_complex.h
@@ -0,0 +1,17 @@
+#ifndef __GSL_VECTOR_COMPLEX_H__
+#define __GSL_VECTOR_COMPLEX_H__
+
+#define  GSL_VECTOR_REAL(z, i)  ((z)->data[2*(i)*(z)->stride])
+#define  GSL_VECTOR_IMAG(z, i)  ((z)->data[2*(i)*(z)->stride + 1])
+
+#if GSL_RANGE_CHECK
+#define GSL_VECTOR_COMPLEX(zv, i) (((i) >= (zv)->size ? (gsl_error ("index out of range", __FILE__, __LINE__, GSL_EINVAL), 0):0 , *GSL_COMPLEX_AT((zv),(i))))
+#else
+#define GSL_VECTOR_COMPLEX(zv, i) (*GSL_COMPLEX_AT((zv),(i)))
+#endif
+
+#define GSL_COMPLEX_AT(zv,i) ((gsl_complex*)&((zv)->data[2*(i)*(zv)->stride]))
+#define GSL_COMPLEX_FLOAT_AT(zv,i) ((gsl_complex_float*)&((zv)->data[2*(i)*(zv)->stride]))
+#define GSL_COMPLEX_LONG_DOUBLE_AT(zv,i) ((gsl_complex_long_double*)&((zv)->data[2*(i)*(zv)->stride]))
+
+#endif /* __GSL_VECTOR_COMPLEX_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_complex_double.h b/util/X86LINUX64/include/gsl/gsl_vector_complex_double.h
new file mode 100644 (file)
index 0000000..2e53617
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_complex_double.h
@@ -0,0 +1,251 @@
+/* vector/gsl_vector_complex_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_VECTOR_COMPLEX_DOUBLE_H__
+#define __GSL_VECTOR_COMPLEX_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_double.h>
+#include <gsl/gsl_vector_complex.h>
+#include <gsl/gsl_block_complex_double.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size;
+  size_t stride;
+  double *data;
+  gsl_block_complex *block;
+  int owner;
+} gsl_vector_complex;
+
+typedef struct
+{
+  gsl_vector_complex vector;
+} _gsl_vector_complex_view;
+
+typedef _gsl_vector_complex_view gsl_vector_complex_view;
+
+typedef struct
+{
+  gsl_vector_complex vector;
+} _gsl_vector_complex_const_view;
+
+typedef const _gsl_vector_complex_const_view gsl_vector_complex_const_view;
+
+/* Allocation */
+
+gsl_vector_complex *gsl_vector_complex_alloc (const size_t n);
+gsl_vector_complex *gsl_vector_complex_calloc (const size_t n);
+
+gsl_vector_complex *
+gsl_vector_complex_alloc_from_block (gsl_block_complex * b, 
+                                           const size_t offset, 
+                                           const size_t n, 
+                                           const size_t stride);
+
+gsl_vector_complex *
+gsl_vector_complex_alloc_from_vector (gsl_vector_complex * v, 
+                                             const size_t offset, 
+                                             const size_t n, 
+                                             const size_t stride);
+
+void gsl_vector_complex_free (gsl_vector_complex * v);
+
+/* Views */
+
+_gsl_vector_complex_view
+gsl_vector_complex_view_array (double *base,
+                                     size_t n);
+
+_gsl_vector_complex_view
+gsl_vector_complex_view_array_with_stride (double *base,
+                                                 size_t stride,
+                                                 size_t n);
+
+_gsl_vector_complex_const_view
+gsl_vector_complex_const_view_array (const double *base,
+                                           size_t n);
+
+_gsl_vector_complex_const_view
+gsl_vector_complex_const_view_array_with_stride (const double *base,
+                                                       size_t stride,
+                                                       size_t n);
+
+_gsl_vector_complex_view
+gsl_vector_complex_subvector (gsl_vector_complex *base,
+                                         size_t i, 
+                                         size_t n);
+
+
+_gsl_vector_complex_view 
+gsl_vector_complex_subvector_with_stride (gsl_vector_complex *v, 
+                                                size_t i, 
+                                                size_t stride, 
+                                                size_t n);
+
+_gsl_vector_complex_const_view
+gsl_vector_complex_const_subvector (const gsl_vector_complex *base,
+                                               size_t i, 
+                                               size_t n);
+
+
+_gsl_vector_complex_const_view 
+gsl_vector_complex_const_subvector_with_stride (const gsl_vector_complex *v, 
+                                                      size_t i, 
+                                                      size_t stride, 
+                                                      size_t n);
+
+_gsl_vector_view
+gsl_vector_complex_real (gsl_vector_complex *v);
+
+_gsl_vector_view 
+gsl_vector_complex_imag (gsl_vector_complex *v);
+
+_gsl_vector_const_view
+gsl_vector_complex_const_real (const gsl_vector_complex *v);
+
+_gsl_vector_const_view 
+gsl_vector_complex_const_imag (const gsl_vector_complex *v);
+
+
+/* Operations */
+
+void gsl_vector_complex_set_zero (gsl_vector_complex * v);
+void gsl_vector_complex_set_all (gsl_vector_complex * v,
+                                       gsl_complex z);
+int gsl_vector_complex_set_basis (gsl_vector_complex * v, size_t i);
+
+int gsl_vector_complex_fread (FILE * stream,
+                                    gsl_vector_complex * v);
+int gsl_vector_complex_fwrite (FILE * stream,
+                                     const gsl_vector_complex * v);
+int gsl_vector_complex_fscanf (FILE * stream,
+                                     gsl_vector_complex * v);
+int gsl_vector_complex_fprintf (FILE * stream,
+                                      const gsl_vector_complex * v,
+                                      const char *format);
+
+int gsl_vector_complex_memcpy (gsl_vector_complex * dest, const gsl_vector_complex * src);
+
+int gsl_vector_complex_reverse (gsl_vector_complex * v);
+
+int gsl_vector_complex_swap (gsl_vector_complex * v, gsl_vector_complex * w);
+int gsl_vector_complex_swap_elements (gsl_vector_complex * v, const size_t i, const size_t j);
+
+int gsl_vector_complex_equal (const gsl_vector_complex * u, 
+                                    const gsl_vector_complex * v);
+
+int gsl_vector_complex_isnull (const gsl_vector_complex * v);
+int gsl_vector_complex_ispos (const gsl_vector_complex * v);
+int gsl_vector_complex_isneg (const gsl_vector_complex * v);
+int gsl_vector_complex_isnonneg (const gsl_vector_complex * v);
+
+int gsl_vector_complex_add (gsl_vector_complex * a, const gsl_vector_complex * b);
+int gsl_vector_complex_sub (gsl_vector_complex * a, const gsl_vector_complex * b);
+int gsl_vector_complex_mul (gsl_vector_complex * a, const gsl_vector_complex * b);
+int gsl_vector_complex_div (gsl_vector_complex * a, const gsl_vector_complex * b);
+int gsl_vector_complex_scale (gsl_vector_complex * a, const gsl_complex x);
+int gsl_vector_complex_add_constant (gsl_vector_complex * a, const gsl_complex x);
+
+INLINE_DECL gsl_complex gsl_vector_complex_get (const gsl_vector_complex * v, const size_t i);
+INLINE_DECL void gsl_vector_complex_set (gsl_vector_complex * v, const size_t i, gsl_complex z);
+INLINE_DECL gsl_complex *gsl_vector_complex_ptr (gsl_vector_complex * v, const size_t i);
+INLINE_DECL const gsl_complex *gsl_vector_complex_const_ptr (const gsl_vector_complex * v, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+gsl_complex
+gsl_vector_complex_get (const gsl_vector_complex * v,
+                              const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      gsl_complex zero = {{0, 0}};
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, zero);
+    }
+#endif
+  return *GSL_COMPLEX_AT (v, i);
+}
+
+INLINE_FUN
+void
+gsl_vector_complex_set (gsl_vector_complex * v,
+                              const size_t i, gsl_complex z)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VOID ("index out of range", GSL_EINVAL);
+    }
+#endif
+  *GSL_COMPLEX_AT (v, i) = z;
+}
+
+INLINE_FUN
+gsl_complex *
+gsl_vector_complex_ptr (gsl_vector_complex * v,
+                              const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return GSL_COMPLEX_AT (v, i);
+}
+
+INLINE_FUN
+const gsl_complex *
+gsl_vector_complex_const_ptr (const gsl_vector_complex * v,
+                                    const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return GSL_COMPLEX_AT (v, i);
+}
+
+
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_VECTOR_COMPLEX_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_complex_float.h b/util/X86LINUX64/include/gsl/gsl_vector_complex_float.h
new file mode 100644 (file)
index 0000000..182f487
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_complex_float.h
@@ -0,0 +1,251 @@
+/* vector/gsl_vector_complex_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_VECTOR_COMPLEX_FLOAT_H__
+#define __GSL_VECTOR_COMPLEX_FLOAT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_float.h>
+#include <gsl/gsl_vector_complex.h>
+#include <gsl/gsl_block_complex_float.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size;
+  size_t stride;
+  float *data;
+  gsl_block_complex_float *block;
+  int owner;
+} gsl_vector_complex_float;
+
+typedef struct
+{
+  gsl_vector_complex_float vector;
+} _gsl_vector_complex_float_view;
+
+typedef _gsl_vector_complex_float_view gsl_vector_complex_float_view;
+
+typedef struct
+{
+  gsl_vector_complex_float vector;
+} _gsl_vector_complex_float_const_view;
+
+typedef const _gsl_vector_complex_float_const_view gsl_vector_complex_float_const_view;
+
+/* Allocation */
+
+gsl_vector_complex_float *gsl_vector_complex_float_alloc (const size_t n);
+gsl_vector_complex_float *gsl_vector_complex_float_calloc (const size_t n);
+
+gsl_vector_complex_float *
+gsl_vector_complex_float_alloc_from_block (gsl_block_complex_float * b, 
+                                           const size_t offset, 
+                                           const size_t n, 
+                                           const size_t stride);
+
+gsl_vector_complex_float *
+gsl_vector_complex_float_alloc_from_vector (gsl_vector_complex_float * v, 
+                                             const size_t offset, 
+                                             const size_t n, 
+                                             const size_t stride);
+
+void gsl_vector_complex_float_free (gsl_vector_complex_float * v);
+
+/* Views */
+
+_gsl_vector_complex_float_view
+gsl_vector_complex_float_view_array (float *base,
+                                     size_t n);
+
+_gsl_vector_complex_float_view
+gsl_vector_complex_float_view_array_with_stride (float *base,
+                                                 size_t stride,
+                                                 size_t n);
+
+_gsl_vector_complex_float_const_view
+gsl_vector_complex_float_const_view_array (const float *base,
+                                           size_t n);
+
+_gsl_vector_complex_float_const_view
+gsl_vector_complex_float_const_view_array_with_stride (const float *base,
+                                                       size_t stride,
+                                                       size_t n);
+
+_gsl_vector_complex_float_view
+gsl_vector_complex_float_subvector (gsl_vector_complex_float *base,
+                                         size_t i, 
+                                         size_t n);
+
+
+_gsl_vector_complex_float_view 
+gsl_vector_complex_float_subvector_with_stride (gsl_vector_complex_float *v, 
+                                                size_t i, 
+                                                size_t stride, 
+                                                size_t n);
+
+_gsl_vector_complex_float_const_view
+gsl_vector_complex_float_const_subvector (const gsl_vector_complex_float *base,
+                                               size_t i, 
+                                               size_t n);
+
+
+_gsl_vector_complex_float_const_view 
+gsl_vector_complex_float_const_subvector_with_stride (const gsl_vector_complex_float *v, 
+                                                      size_t i, 
+                                                      size_t stride, 
+                                                      size_t n);
+
+_gsl_vector_float_view
+gsl_vector_complex_float_real (gsl_vector_complex_float *v);
+
+_gsl_vector_float_view 
+gsl_vector_complex_float_imag (gsl_vector_complex_float *v);
+
+_gsl_vector_float_const_view
+gsl_vector_complex_float_const_real (const gsl_vector_complex_float *v);
+
+_gsl_vector_float_const_view 
+gsl_vector_complex_float_const_imag (const gsl_vector_complex_float *v);
+
+
+/* Operations */
+
+void gsl_vector_complex_float_set_zero (gsl_vector_complex_float * v);
+void gsl_vector_complex_float_set_all (gsl_vector_complex_float * v,
+                                       gsl_complex_float z);
+int gsl_vector_complex_float_set_basis (gsl_vector_complex_float * v, size_t i);
+
+int gsl_vector_complex_float_fread (FILE * stream,
+                                    gsl_vector_complex_float * v);
+int gsl_vector_complex_float_fwrite (FILE * stream,
+                                     const gsl_vector_complex_float * v);
+int gsl_vector_complex_float_fscanf (FILE * stream,
+                                     gsl_vector_complex_float * v);
+int gsl_vector_complex_float_fprintf (FILE * stream,
+                                      const gsl_vector_complex_float * v,
+                                      const char *format);
+
+int gsl_vector_complex_float_memcpy (gsl_vector_complex_float * dest, const gsl_vector_complex_float * src);
+
+int gsl_vector_complex_float_reverse (gsl_vector_complex_float * v);
+
+int gsl_vector_complex_float_swap (gsl_vector_complex_float * v, gsl_vector_complex_float * w);
+int gsl_vector_complex_float_swap_elements (gsl_vector_complex_float * v, const size_t i, const size_t j);
+
+int gsl_vector_complex_float_equal (const gsl_vector_complex_float * u, 
+                                    const gsl_vector_complex_float * v);
+
+int gsl_vector_complex_float_isnull (const gsl_vector_complex_float * v);
+int gsl_vector_complex_float_ispos (const gsl_vector_complex_float * v);
+int gsl_vector_complex_float_isneg (const gsl_vector_complex_float * v);
+int gsl_vector_complex_float_isnonneg (const gsl_vector_complex_float * v);
+
+int gsl_vector_complex_float_add (gsl_vector_complex_float * a, const gsl_vector_complex_float * b);
+int gsl_vector_complex_float_sub (gsl_vector_complex_float * a, const gsl_vector_complex_float * b);
+int gsl_vector_complex_float_mul (gsl_vector_complex_float * a, const gsl_vector_complex_float * b);
+int gsl_vector_complex_float_div (gsl_vector_complex_float * a, const gsl_vector_complex_float * b);
+int gsl_vector_complex_float_scale (gsl_vector_complex_float * a, const gsl_complex_float x);
+int gsl_vector_complex_float_add_constant (gsl_vector_complex_float * a, const gsl_complex_float x);
+
+INLINE_DECL gsl_complex_float gsl_vector_complex_float_get (const gsl_vector_complex_float * v, const size_t i);
+INLINE_DECL void gsl_vector_complex_float_set (gsl_vector_complex_float * v, const size_t i, gsl_complex_float z);
+INLINE_DECL gsl_complex_float *gsl_vector_complex_float_ptr (gsl_vector_complex_float * v, const size_t i);
+INLINE_DECL const gsl_complex_float *gsl_vector_complex_float_const_ptr (const gsl_vector_complex_float * v, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+gsl_complex_float
+gsl_vector_complex_float_get (const gsl_vector_complex_float * v,
+                              const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      gsl_complex_float zero = {{0, 0}};
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, zero);
+    }
+#endif
+  return *GSL_COMPLEX_FLOAT_AT (v, i);
+}
+
+INLINE_FUN
+void
+gsl_vector_complex_float_set (gsl_vector_complex_float * v,
+                              const size_t i, gsl_complex_float z)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VOID ("index out of range", GSL_EINVAL);
+    }
+#endif
+  *GSL_COMPLEX_FLOAT_AT (v, i) = z;
+}
+
+INLINE_FUN
+gsl_complex_float *
+gsl_vector_complex_float_ptr (gsl_vector_complex_float * v,
+                              const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return GSL_COMPLEX_FLOAT_AT (v, i);
+}
+
+INLINE_FUN
+const gsl_complex_float *
+gsl_vector_complex_float_const_ptr (const gsl_vector_complex_float * v,
+                                    const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return GSL_COMPLEX_FLOAT_AT (v, i);
+}
+
+
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_VECTOR_COMPLEX_FLOAT_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_complex_long_double.h b/util/X86LINUX64/include/gsl/gsl_vector_complex_long_double.h
new file mode 100644 (file)
index 0000000..91755e0
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_complex_long_double.h
@@ -0,0 +1,251 @@
+/* vector/gsl_vector_complex_long_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_VECTOR_COMPLEX_LONG_DOUBLE_H__
+#define __GSL_VECTOR_COMPLEX_LONG_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_vector_long_double.h>
+#include <gsl/gsl_vector_complex.h>
+#include <gsl/gsl_block_complex_long_double.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size;
+  size_t stride;
+  long double *data;
+  gsl_block_complex_long_double *block;
+  int owner;
+} gsl_vector_complex_long_double;
+
+typedef struct
+{
+  gsl_vector_complex_long_double vector;
+} _gsl_vector_complex_long_double_view;
+
+typedef _gsl_vector_complex_long_double_view gsl_vector_complex_long_double_view;
+
+typedef struct
+{
+  gsl_vector_complex_long_double vector;
+} _gsl_vector_complex_long_double_const_view;
+
+typedef const _gsl_vector_complex_long_double_const_view gsl_vector_complex_long_double_const_view;
+
+/* Allocation */
+
+gsl_vector_complex_long_double *gsl_vector_complex_long_double_alloc (const size_t n);
+gsl_vector_complex_long_double *gsl_vector_complex_long_double_calloc (const size_t n);
+
+gsl_vector_complex_long_double *
+gsl_vector_complex_long_double_alloc_from_block (gsl_block_complex_long_double * b, 
+                                           const size_t offset, 
+                                           const size_t n, 
+                                           const size_t stride);
+
+gsl_vector_complex_long_double *
+gsl_vector_complex_long_double_alloc_from_vector (gsl_vector_complex_long_double * v, 
+                                             const size_t offset, 
+                                             const size_t n, 
+                                             const size_t stride);
+
+void gsl_vector_complex_long_double_free (gsl_vector_complex_long_double * v);
+
+/* Views */
+
+_gsl_vector_complex_long_double_view
+gsl_vector_complex_long_double_view_array (long double *base,
+                                     size_t n);
+
+_gsl_vector_complex_long_double_view
+gsl_vector_complex_long_double_view_array_with_stride (long double *base,
+                                                 size_t stride,
+                                                 size_t n);
+
+_gsl_vector_complex_long_double_const_view
+gsl_vector_complex_long_double_const_view_array (const long double *base,
+                                           size_t n);
+
+_gsl_vector_complex_long_double_const_view
+gsl_vector_complex_long_double_const_view_array_with_stride (const long double *base,
+                                                       size_t stride,
+                                                       size_t n);
+
+_gsl_vector_complex_long_double_view
+gsl_vector_complex_long_double_subvector (gsl_vector_complex_long_double *base,
+                                         size_t i, 
+                                         size_t n);
+
+
+_gsl_vector_complex_long_double_view 
+gsl_vector_complex_long_double_subvector_with_stride (gsl_vector_complex_long_double *v, 
+                                                size_t i, 
+                                                size_t stride, 
+                                                size_t n);
+
+_gsl_vector_complex_long_double_const_view
+gsl_vector_complex_long_double_const_subvector (const gsl_vector_complex_long_double *base,
+                                               size_t i, 
+                                               size_t n);
+
+
+_gsl_vector_complex_long_double_const_view 
+gsl_vector_complex_long_double_const_subvector_with_stride (const gsl_vector_complex_long_double *v, 
+                                                      size_t i, 
+                                                      size_t stride, 
+                                                      size_t n);
+
+_gsl_vector_long_double_view
+gsl_vector_complex_long_double_real (gsl_vector_complex_long_double *v);
+
+_gsl_vector_long_double_view 
+gsl_vector_complex_long_double_imag (gsl_vector_complex_long_double *v);
+
+_gsl_vector_long_double_const_view
+gsl_vector_complex_long_double_const_real (const gsl_vector_complex_long_double *v);
+
+_gsl_vector_long_double_const_view 
+gsl_vector_complex_long_double_const_imag (const gsl_vector_complex_long_double *v);
+
+
+/* Operations */
+
+void gsl_vector_complex_long_double_set_zero (gsl_vector_complex_long_double * v);
+void gsl_vector_complex_long_double_set_all (gsl_vector_complex_long_double * v,
+                                       gsl_complex_long_double z);
+int gsl_vector_complex_long_double_set_basis (gsl_vector_complex_long_double * v, size_t i);
+
+int gsl_vector_complex_long_double_fread (FILE * stream,
+                                    gsl_vector_complex_long_double * v);
+int gsl_vector_complex_long_double_fwrite (FILE * stream,
+                                     const gsl_vector_complex_long_double * v);
+int gsl_vector_complex_long_double_fscanf (FILE * stream,
+                                     gsl_vector_complex_long_double * v);
+int gsl_vector_complex_long_double_fprintf (FILE * stream,
+                                      const gsl_vector_complex_long_double * v,
+                                      const char *format);
+
+int gsl_vector_complex_long_double_memcpy (gsl_vector_complex_long_double * dest, const gsl_vector_complex_long_double * src);
+
+int gsl_vector_complex_long_double_reverse (gsl_vector_complex_long_double * v);
+
+int gsl_vector_complex_long_double_swap (gsl_vector_complex_long_double * v, gsl_vector_complex_long_double * w);
+int gsl_vector_complex_long_double_swap_elements (gsl_vector_complex_long_double * v, const size_t i, const size_t j);
+
+int gsl_vector_complex_long_double_equal (const gsl_vector_complex_long_double * u, 
+                                    const gsl_vector_complex_long_double * v);
+
+int gsl_vector_complex_long_double_isnull (const gsl_vector_complex_long_double * v);
+int gsl_vector_complex_long_double_ispos (const gsl_vector_complex_long_double * v);
+int gsl_vector_complex_long_double_isneg (const gsl_vector_complex_long_double * v);
+int gsl_vector_complex_long_double_isnonneg (const gsl_vector_complex_long_double * v);
+
+int gsl_vector_complex_long_double_add (gsl_vector_complex_long_double * a, const gsl_vector_complex_long_double * b);
+int gsl_vector_complex_long_double_sub (gsl_vector_complex_long_double * a, const gsl_vector_complex_long_double * b);
+int gsl_vector_complex_long_double_mul (gsl_vector_complex_long_double * a, const gsl_vector_complex_long_double * b);
+int gsl_vector_complex_long_double_div (gsl_vector_complex_long_double * a, const gsl_vector_complex_long_double * b);
+int gsl_vector_complex_long_double_scale (gsl_vector_complex_long_double * a, const gsl_complex_long_double x);
+int gsl_vector_complex_long_double_add_constant (gsl_vector_complex_long_double * a, const gsl_complex_long_double x);
+
+INLINE_DECL gsl_complex_long_double gsl_vector_complex_long_double_get (const gsl_vector_complex_long_double * v, const size_t i);
+INLINE_DECL void gsl_vector_complex_long_double_set (gsl_vector_complex_long_double * v, const size_t i, gsl_complex_long_double z);
+INLINE_DECL gsl_complex_long_double *gsl_vector_complex_long_double_ptr (gsl_vector_complex_long_double * v, const size_t i);
+INLINE_DECL const gsl_complex_long_double *gsl_vector_complex_long_double_const_ptr (const gsl_vector_complex_long_double * v, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+gsl_complex_long_double
+gsl_vector_complex_long_double_get (const gsl_vector_complex_long_double * v,
+                              const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      gsl_complex_long_double zero = {{0, 0}};
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, zero);
+    }
+#endif
+  return *GSL_COMPLEX_LONG_DOUBLE_AT (v, i);
+}
+
+INLINE_FUN
+void
+gsl_vector_complex_long_double_set (gsl_vector_complex_long_double * v,
+                              const size_t i, gsl_complex_long_double z)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VOID ("index out of range", GSL_EINVAL);
+    }
+#endif
+  *GSL_COMPLEX_LONG_DOUBLE_AT (v, i) = z;
+}
+
+INLINE_FUN
+gsl_complex_long_double *
+gsl_vector_complex_long_double_ptr (gsl_vector_complex_long_double * v,
+                              const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return GSL_COMPLEX_LONG_DOUBLE_AT (v, i);
+}
+
+INLINE_FUN
+const gsl_complex_long_double *
+gsl_vector_complex_long_double_const_ptr (const gsl_vector_complex_long_double * v,
+                                    const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return GSL_COMPLEX_LONG_DOUBLE_AT (v, i);
+}
+
+
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_VECTOR_COMPLEX_LONG_DOUBLE_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_double.h b/util/X86LINUX64/include/gsl/gsl_vector_double.h
new file mode 100644 (file)
index 0000000..26a12d8
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_double.h
@@ -0,0 +1,230 @@
+/* vector/gsl_vector_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_VECTOR_DOUBLE_H__
+#define __GSL_VECTOR_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_block_double.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size;
+  size_t stride;
+  double *data;
+  gsl_block *block;
+  int owner;
+} 
+gsl_vector;
+
+typedef struct
+{
+  gsl_vector vector;
+} _gsl_vector_view;
+
+typedef _gsl_vector_view gsl_vector_view;
+
+typedef struct
+{
+  gsl_vector vector;
+} _gsl_vector_const_view;
+
+typedef const _gsl_vector_const_view gsl_vector_const_view;
+
+
+/* Allocation */
+
+gsl_vector *gsl_vector_alloc (const size_t n);
+gsl_vector *gsl_vector_calloc (const size_t n);
+
+gsl_vector *gsl_vector_alloc_from_block (gsl_block * b,
+                                                     const size_t offset, 
+                                                     const size_t n, 
+                                                     const size_t stride);
+
+gsl_vector *gsl_vector_alloc_from_vector (gsl_vector * v,
+                                                      const size_t offset, 
+                                                      const size_t n, 
+                                                      const size_t stride);
+
+void gsl_vector_free (gsl_vector * v);
+
+/* Views */
+
+_gsl_vector_view 
+gsl_vector_view_array (double *v, size_t n);
+
+_gsl_vector_view 
+gsl_vector_view_array_with_stride (double *base,
+                                         size_t stride,
+                                         size_t n);
+
+_gsl_vector_const_view 
+gsl_vector_const_view_array (const double *v, size_t n);
+
+_gsl_vector_const_view 
+gsl_vector_const_view_array_with_stride (const double *base,
+                                               size_t stride,
+                                               size_t n);
+
+_gsl_vector_view 
+gsl_vector_subvector (gsl_vector *v, 
+                            size_t i, 
+                            size_t n);
+
+_gsl_vector_view 
+gsl_vector_subvector_with_stride (gsl_vector *v, 
+                                        size_t i,
+                                        size_t stride,
+                                        size_t n);
+
+_gsl_vector_const_view 
+gsl_vector_const_subvector (const gsl_vector *v, 
+                                  size_t i, 
+                                  size_t n);
+
+_gsl_vector_const_view 
+gsl_vector_const_subvector_with_stride (const gsl_vector *v, 
+                                              size_t i, 
+                                              size_t stride,
+                                              size_t n);
+
+/* Operations */
+
+void gsl_vector_set_zero (gsl_vector * v);
+void gsl_vector_set_all (gsl_vector * v, double x);
+int gsl_vector_set_basis (gsl_vector * v, size_t i);
+
+int gsl_vector_fread (FILE * stream, gsl_vector * v);
+int gsl_vector_fwrite (FILE * stream, const gsl_vector * v);
+int gsl_vector_fscanf (FILE * stream, gsl_vector * v);
+int gsl_vector_fprintf (FILE * stream, const gsl_vector * v,
+                              const char *format);
+
+int gsl_vector_memcpy (gsl_vector * dest, const gsl_vector * src);
+
+int gsl_vector_reverse (gsl_vector * v);
+
+int gsl_vector_swap (gsl_vector * v, gsl_vector * w);
+int gsl_vector_swap_elements (gsl_vector * v, const size_t i, const size_t j);
+
+double gsl_vector_max (const gsl_vector * v);
+double gsl_vector_min (const gsl_vector * v);
+void gsl_vector_minmax (const gsl_vector * v, double * min_out, double * max_out);
+
+size_t gsl_vector_max_index (const gsl_vector * v);
+size_t gsl_vector_min_index (const gsl_vector * v);
+void gsl_vector_minmax_index (const gsl_vector * v, size_t * imin, size_t * imax);
+
+int gsl_vector_add (gsl_vector * a, const gsl_vector * b);
+int gsl_vector_sub (gsl_vector * a, const gsl_vector * b);
+int gsl_vector_mul (gsl_vector * a, const gsl_vector * b);
+int gsl_vector_div (gsl_vector * a, const gsl_vector * b);
+int gsl_vector_scale (gsl_vector * a, const double x);
+int gsl_vector_add_constant (gsl_vector * a, const double x);
+
+int gsl_vector_equal (const gsl_vector * u, 
+                            const gsl_vector * v);
+
+int gsl_vector_isnull (const gsl_vector * v);
+int gsl_vector_ispos (const gsl_vector * v);
+int gsl_vector_isneg (const gsl_vector * v);
+int gsl_vector_isnonneg (const gsl_vector * v);
+
+INLINE_DECL double gsl_vector_get (const gsl_vector * v, const size_t i);
+INLINE_DECL void gsl_vector_set (gsl_vector * v, const size_t i, double x);
+INLINE_DECL double * gsl_vector_ptr (gsl_vector * v, const size_t i);
+INLINE_DECL const double * gsl_vector_const_ptr (const gsl_vector * v, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+double
+gsl_vector_get (const gsl_vector * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, 0);
+    }
+#endif
+  return v->data[i * v->stride];
+}
+
+INLINE_FUN
+void
+gsl_vector_set (gsl_vector * v, const size_t i, double x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VOID ("index out of range", GSL_EINVAL);
+    }
+#endif
+  v->data[i * v->stride] = x;
+}
+
+INLINE_FUN
+double *
+gsl_vector_ptr (gsl_vector * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (double *) (v->data + i * v->stride);
+}
+
+INLINE_FUN
+const double *
+gsl_vector_const_ptr (const gsl_vector * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (const double *) (v->data + i * v->stride);
+}
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_VECTOR_DOUBLE_H__ */
+
+

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_float.h b/util/X86LINUX64/include/gsl/gsl_vector_float.h
new file mode 100644 (file)
index 0000000..2b499c8
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_float.h
@@ -0,0 +1,230 @@
+/* vector/gsl_vector_float.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_VECTOR_FLOAT_H__
+#define __GSL_VECTOR_FLOAT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_block_float.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size;
+  size_t stride;
+  float *data;
+  gsl_block_float *block;
+  int owner;
+} 
+gsl_vector_float;
+
+typedef struct
+{
+  gsl_vector_float vector;
+} _gsl_vector_float_view;
+
+typedef _gsl_vector_float_view gsl_vector_float_view;
+
+typedef struct
+{
+  gsl_vector_float vector;
+} _gsl_vector_float_const_view;
+
+typedef const _gsl_vector_float_const_view gsl_vector_float_const_view;
+
+
+/* Allocation */
+
+gsl_vector_float *gsl_vector_float_alloc (const size_t n);
+gsl_vector_float *gsl_vector_float_calloc (const size_t n);
+
+gsl_vector_float *gsl_vector_float_alloc_from_block (gsl_block_float * b,
+                                                     const size_t offset, 
+                                                     const size_t n, 
+                                                     const size_t stride);
+
+gsl_vector_float *gsl_vector_float_alloc_from_vector (gsl_vector_float * v,
+                                                      const size_t offset, 
+                                                      const size_t n, 
+                                                      const size_t stride);
+
+void gsl_vector_float_free (gsl_vector_float * v);
+
+/* Views */
+
+_gsl_vector_float_view 
+gsl_vector_float_view_array (float *v, size_t n);
+
+_gsl_vector_float_view 
+gsl_vector_float_view_array_with_stride (float *base,
+                                         size_t stride,
+                                         size_t n);
+
+_gsl_vector_float_const_view 
+gsl_vector_float_const_view_array (const float *v, size_t n);
+
+_gsl_vector_float_const_view 
+gsl_vector_float_const_view_array_with_stride (const float *base,
+                                               size_t stride,
+                                               size_t n);
+
+_gsl_vector_float_view 
+gsl_vector_float_subvector (gsl_vector_float *v, 
+                            size_t i, 
+                            size_t n);
+
+_gsl_vector_float_view 
+gsl_vector_float_subvector_with_stride (gsl_vector_float *v, 
+                                        size_t i,
+                                        size_t stride,
+                                        size_t n);
+
+_gsl_vector_float_const_view 
+gsl_vector_float_const_subvector (const gsl_vector_float *v, 
+                                  size_t i, 
+                                  size_t n);
+
+_gsl_vector_float_const_view 
+gsl_vector_float_const_subvector_with_stride (const gsl_vector_float *v, 
+                                              size_t i, 
+                                              size_t stride,
+                                              size_t n);
+
+/* Operations */
+
+void gsl_vector_float_set_zero (gsl_vector_float * v);
+void gsl_vector_float_set_all (gsl_vector_float * v, float x);
+int gsl_vector_float_set_basis (gsl_vector_float * v, size_t i);
+
+int gsl_vector_float_fread (FILE * stream, gsl_vector_float * v);
+int gsl_vector_float_fwrite (FILE * stream, const gsl_vector_float * v);
+int gsl_vector_float_fscanf (FILE * stream, gsl_vector_float * v);
+int gsl_vector_float_fprintf (FILE * stream, const gsl_vector_float * v,
+                              const char *format);
+
+int gsl_vector_float_memcpy (gsl_vector_float * dest, const gsl_vector_float * src);
+
+int gsl_vector_float_reverse (gsl_vector_float * v);
+
+int gsl_vector_float_swap (gsl_vector_float * v, gsl_vector_float * w);
+int gsl_vector_float_swap_elements (gsl_vector_float * v, const size_t i, const size_t j);
+
+float gsl_vector_float_max (const gsl_vector_float * v);
+float gsl_vector_float_min (const gsl_vector_float * v);
+void gsl_vector_float_minmax (const gsl_vector_float * v, float * min_out, float * max_out);
+
+size_t gsl_vector_float_max_index (const gsl_vector_float * v);
+size_t gsl_vector_float_min_index (const gsl_vector_float * v);
+void gsl_vector_float_minmax_index (const gsl_vector_float * v, size_t * imin, size_t * imax);
+
+int gsl_vector_float_add (gsl_vector_float * a, const gsl_vector_float * b);
+int gsl_vector_float_sub (gsl_vector_float * a, const gsl_vector_float * b);
+int gsl_vector_float_mul (gsl_vector_float * a, const gsl_vector_float * b);
+int gsl_vector_float_div (gsl_vector_float * a, const gsl_vector_float * b);
+int gsl_vector_float_scale (gsl_vector_float * a, const double x);
+int gsl_vector_float_add_constant (gsl_vector_float * a, const double x);
+
+int gsl_vector_float_equal (const gsl_vector_float * u, 
+                            const gsl_vector_float * v);
+
+int gsl_vector_float_isnull (const gsl_vector_float * v);
+int gsl_vector_float_ispos (const gsl_vector_float * v);
+int gsl_vector_float_isneg (const gsl_vector_float * v);
+int gsl_vector_float_isnonneg (const gsl_vector_float * v);
+
+INLINE_DECL float gsl_vector_float_get (const gsl_vector_float * v, const size_t i);
+INLINE_DECL void gsl_vector_float_set (gsl_vector_float * v, const size_t i, float x);
+INLINE_DECL float * gsl_vector_float_ptr (gsl_vector_float * v, const size_t i);
+INLINE_DECL const float * gsl_vector_float_const_ptr (const gsl_vector_float * v, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+float
+gsl_vector_float_get (const gsl_vector_float * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, 0);
+    }
+#endif
+  return v->data[i * v->stride];
+}
+
+INLINE_FUN
+void
+gsl_vector_float_set (gsl_vector_float * v, const size_t i, float x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VOID ("index out of range", GSL_EINVAL);
+    }
+#endif
+  v->data[i * v->stride] = x;
+}
+
+INLINE_FUN
+float *
+gsl_vector_float_ptr (gsl_vector_float * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (float *) (v->data + i * v->stride);
+}
+
+INLINE_FUN
+const float *
+gsl_vector_float_const_ptr (const gsl_vector_float * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (const float *) (v->data + i * v->stride);
+}
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_VECTOR_FLOAT_H__ */
+
+

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_int.h b/util/X86LINUX64/include/gsl/gsl_vector_int.h
new file mode 100644 (file)
index 0000000..de04a44
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_int.h
@@ -0,0 +1,230 @@
+/* vector/gsl_vector_int.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_VECTOR_INT_H__
+#define __GSL_VECTOR_INT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_block_int.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size;
+  size_t stride;
+  int *data;
+  gsl_block_int *block;
+  int owner;
+} 
+gsl_vector_int;
+
+typedef struct
+{
+  gsl_vector_int vector;
+} _gsl_vector_int_view;
+
+typedef _gsl_vector_int_view gsl_vector_int_view;
+
+typedef struct
+{
+  gsl_vector_int vector;
+} _gsl_vector_int_const_view;
+
+typedef const _gsl_vector_int_const_view gsl_vector_int_const_view;
+
+
+/* Allocation */
+
+gsl_vector_int *gsl_vector_int_alloc (const size_t n);
+gsl_vector_int *gsl_vector_int_calloc (const size_t n);
+
+gsl_vector_int *gsl_vector_int_alloc_from_block (gsl_block_int * b,
+                                                     const size_t offset, 
+                                                     const size_t n, 
+                                                     const size_t stride);
+
+gsl_vector_int *gsl_vector_int_alloc_from_vector (gsl_vector_int * v,
+                                                      const size_t offset, 
+                                                      const size_t n, 
+                                                      const size_t stride);
+
+void gsl_vector_int_free (gsl_vector_int * v);
+
+/* Views */
+
+_gsl_vector_int_view 
+gsl_vector_int_view_array (int *v, size_t n);
+
+_gsl_vector_int_view 
+gsl_vector_int_view_array_with_stride (int *base,
+                                         size_t stride,
+                                         size_t n);
+
+_gsl_vector_int_const_view 
+gsl_vector_int_const_view_array (const int *v, size_t n);
+
+_gsl_vector_int_const_view 
+gsl_vector_int_const_view_array_with_stride (const int *base,
+                                               size_t stride,
+                                               size_t n);
+
+_gsl_vector_int_view 
+gsl_vector_int_subvector (gsl_vector_int *v, 
+                            size_t i, 
+                            size_t n);
+
+_gsl_vector_int_view 
+gsl_vector_int_subvector_with_stride (gsl_vector_int *v, 
+                                        size_t i,
+                                        size_t stride,
+                                        size_t n);
+
+_gsl_vector_int_const_view 
+gsl_vector_int_const_subvector (const gsl_vector_int *v, 
+                                  size_t i, 
+                                  size_t n);
+
+_gsl_vector_int_const_view 
+gsl_vector_int_const_subvector_with_stride (const gsl_vector_int *v, 
+                                              size_t i, 
+                                              size_t stride,
+                                              size_t n);
+
+/* Operations */
+
+void gsl_vector_int_set_zero (gsl_vector_int * v);
+void gsl_vector_int_set_all (gsl_vector_int * v, int x);
+int gsl_vector_int_set_basis (gsl_vector_int * v, size_t i);
+
+int gsl_vector_int_fread (FILE * stream, gsl_vector_int * v);
+int gsl_vector_int_fwrite (FILE * stream, const gsl_vector_int * v);
+int gsl_vector_int_fscanf (FILE * stream, gsl_vector_int * v);
+int gsl_vector_int_fprintf (FILE * stream, const gsl_vector_int * v,
+                              const char *format);
+
+int gsl_vector_int_memcpy (gsl_vector_int * dest, const gsl_vector_int * src);
+
+int gsl_vector_int_reverse (gsl_vector_int * v);
+
+int gsl_vector_int_swap (gsl_vector_int * v, gsl_vector_int * w);
+int gsl_vector_int_swap_elements (gsl_vector_int * v, const size_t i, const size_t j);
+
+int gsl_vector_int_max (const gsl_vector_int * v);
+int gsl_vector_int_min (const gsl_vector_int * v);
+void gsl_vector_int_minmax (const gsl_vector_int * v, int * min_out, int * max_out);
+
+size_t gsl_vector_int_max_index (const gsl_vector_int * v);
+size_t gsl_vector_int_min_index (const gsl_vector_int * v);
+void gsl_vector_int_minmax_index (const gsl_vector_int * v, size_t * imin, size_t * imax);
+
+int gsl_vector_int_add (gsl_vector_int * a, const gsl_vector_int * b);
+int gsl_vector_int_sub (gsl_vector_int * a, const gsl_vector_int * b);
+int gsl_vector_int_mul (gsl_vector_int * a, const gsl_vector_int * b);
+int gsl_vector_int_div (gsl_vector_int * a, const gsl_vector_int * b);
+int gsl_vector_int_scale (gsl_vector_int * a, const double x);
+int gsl_vector_int_add_constant (gsl_vector_int * a, const double x);
+
+int gsl_vector_int_equal (const gsl_vector_int * u, 
+                            const gsl_vector_int * v);
+
+int gsl_vector_int_isnull (const gsl_vector_int * v);
+int gsl_vector_int_ispos (const gsl_vector_int * v);
+int gsl_vector_int_isneg (const gsl_vector_int * v);
+int gsl_vector_int_isnonneg (const gsl_vector_int * v);
+
+INLINE_DECL int gsl_vector_int_get (const gsl_vector_int * v, const size_t i);
+INLINE_DECL void gsl_vector_int_set (gsl_vector_int * v, const size_t i, int x);
+INLINE_DECL int * gsl_vector_int_ptr (gsl_vector_int * v, const size_t i);
+INLINE_DECL const int * gsl_vector_int_const_ptr (const gsl_vector_int * v, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+int
+gsl_vector_int_get (const gsl_vector_int * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, 0);
+    }
+#endif
+  return v->data[i * v->stride];
+}
+
+INLINE_FUN
+void
+gsl_vector_int_set (gsl_vector_int * v, const size_t i, int x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VOID ("index out of range", GSL_EINVAL);
+    }
+#endif
+  v->data[i * v->stride] = x;
+}
+
+INLINE_FUN
+int *
+gsl_vector_int_ptr (gsl_vector_int * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (int *) (v->data + i * v->stride);
+}
+
+INLINE_FUN
+const int *
+gsl_vector_int_const_ptr (const gsl_vector_int * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (const int *) (v->data + i * v->stride);
+}
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_VECTOR_INT_H__ */
+
+

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_long.h b/util/X86LINUX64/include/gsl/gsl_vector_long.h
new file mode 100644 (file)
index 0000000..f844a02
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_long.h
@@ -0,0 +1,230 @@
+/* vector/gsl_vector_long.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_VECTOR_LONG_H__
+#define __GSL_VECTOR_LONG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_block_long.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size;
+  size_t stride;
+  long *data;
+  gsl_block_long *block;
+  int owner;
+} 
+gsl_vector_long;
+
+typedef struct
+{
+  gsl_vector_long vector;
+} _gsl_vector_long_view;
+
+typedef _gsl_vector_long_view gsl_vector_long_view;
+
+typedef struct
+{
+  gsl_vector_long vector;
+} _gsl_vector_long_const_view;
+
+typedef const _gsl_vector_long_const_view gsl_vector_long_const_view;
+
+
+/* Allocation */
+
+gsl_vector_long *gsl_vector_long_alloc (const size_t n);
+gsl_vector_long *gsl_vector_long_calloc (const size_t n);
+
+gsl_vector_long *gsl_vector_long_alloc_from_block (gsl_block_long * b,
+                                                     const size_t offset, 
+                                                     const size_t n, 
+                                                     const size_t stride);
+
+gsl_vector_long *gsl_vector_long_alloc_from_vector (gsl_vector_long * v,
+                                                      const size_t offset, 
+                                                      const size_t n, 
+                                                      const size_t stride);
+
+void gsl_vector_long_free (gsl_vector_long * v);
+
+/* Views */
+
+_gsl_vector_long_view 
+gsl_vector_long_view_array (long *v, size_t n);
+
+_gsl_vector_long_view 
+gsl_vector_long_view_array_with_stride (long *base,
+                                         size_t stride,
+                                         size_t n);
+
+_gsl_vector_long_const_view 
+gsl_vector_long_const_view_array (const long *v, size_t n);
+
+_gsl_vector_long_const_view 
+gsl_vector_long_const_view_array_with_stride (const long *base,
+                                               size_t stride,
+                                               size_t n);
+
+_gsl_vector_long_view 
+gsl_vector_long_subvector (gsl_vector_long *v, 
+                            size_t i, 
+                            size_t n);
+
+_gsl_vector_long_view 
+gsl_vector_long_subvector_with_stride (gsl_vector_long *v, 
+                                        size_t i,
+                                        size_t stride,
+                                        size_t n);
+
+_gsl_vector_long_const_view 
+gsl_vector_long_const_subvector (const gsl_vector_long *v, 
+                                  size_t i, 
+                                  size_t n);
+
+_gsl_vector_long_const_view 
+gsl_vector_long_const_subvector_with_stride (const gsl_vector_long *v, 
+                                              size_t i, 
+                                              size_t stride,
+                                              size_t n);
+
+/* Operations */
+
+void gsl_vector_long_set_zero (gsl_vector_long * v);
+void gsl_vector_long_set_all (gsl_vector_long * v, long x);
+int gsl_vector_long_set_basis (gsl_vector_long * v, size_t i);
+
+int gsl_vector_long_fread (FILE * stream, gsl_vector_long * v);
+int gsl_vector_long_fwrite (FILE * stream, const gsl_vector_long * v);
+int gsl_vector_long_fscanf (FILE * stream, gsl_vector_long * v);
+int gsl_vector_long_fprintf (FILE * stream, const gsl_vector_long * v,
+                              const char *format);
+
+int gsl_vector_long_memcpy (gsl_vector_long * dest, const gsl_vector_long * src);
+
+int gsl_vector_long_reverse (gsl_vector_long * v);
+
+int gsl_vector_long_swap (gsl_vector_long * v, gsl_vector_long * w);
+int gsl_vector_long_swap_elements (gsl_vector_long * v, const size_t i, const size_t j);
+
+long gsl_vector_long_max (const gsl_vector_long * v);
+long gsl_vector_long_min (const gsl_vector_long * v);
+void gsl_vector_long_minmax (const gsl_vector_long * v, long * min_out, long * max_out);
+
+size_t gsl_vector_long_max_index (const gsl_vector_long * v);
+size_t gsl_vector_long_min_index (const gsl_vector_long * v);
+void gsl_vector_long_minmax_index (const gsl_vector_long * v, size_t * imin, size_t * imax);
+
+int gsl_vector_long_add (gsl_vector_long * a, const gsl_vector_long * b);
+int gsl_vector_long_sub (gsl_vector_long * a, const gsl_vector_long * b);
+int gsl_vector_long_mul (gsl_vector_long * a, const gsl_vector_long * b);
+int gsl_vector_long_div (gsl_vector_long * a, const gsl_vector_long * b);
+int gsl_vector_long_scale (gsl_vector_long * a, const double x);
+int gsl_vector_long_add_constant (gsl_vector_long * a, const double x);
+
+int gsl_vector_long_equal (const gsl_vector_long * u, 
+                            const gsl_vector_long * v);
+
+int gsl_vector_long_isnull (const gsl_vector_long * v);
+int gsl_vector_long_ispos (const gsl_vector_long * v);
+int gsl_vector_long_isneg (const gsl_vector_long * v);
+int gsl_vector_long_isnonneg (const gsl_vector_long * v);
+
+INLINE_DECL long gsl_vector_long_get (const gsl_vector_long * v, const size_t i);
+INLINE_DECL void gsl_vector_long_set (gsl_vector_long * v, const size_t i, long x);
+INLINE_DECL long * gsl_vector_long_ptr (gsl_vector_long * v, const size_t i);
+INLINE_DECL const long * gsl_vector_long_const_ptr (const gsl_vector_long * v, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+long
+gsl_vector_long_get (const gsl_vector_long * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, 0);
+    }
+#endif
+  return v->data[i * v->stride];
+}
+
+INLINE_FUN
+void
+gsl_vector_long_set (gsl_vector_long * v, const size_t i, long x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VOID ("index out of range", GSL_EINVAL);
+    }
+#endif
+  v->data[i * v->stride] = x;
+}
+
+INLINE_FUN
+long *
+gsl_vector_long_ptr (gsl_vector_long * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (long *) (v->data + i * v->stride);
+}
+
+INLINE_FUN
+const long *
+gsl_vector_long_const_ptr (const gsl_vector_long * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (const long *) (v->data + i * v->stride);
+}
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_VECTOR_LONG_H__ */
+
+

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_long_double.h b/util/X86LINUX64/include/gsl/gsl_vector_long_double.h
new file mode 100644 (file)
index 0000000..836b09a
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_long_double.h
@@ -0,0 +1,230 @@
+/* vector/gsl_vector_long_double.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_VECTOR_LONG_DOUBLE_H__
+#define __GSL_VECTOR_LONG_DOUBLE_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_block_long_double.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size;
+  size_t stride;
+  long double *data;
+  gsl_block_long_double *block;
+  int owner;
+} 
+gsl_vector_long_double;
+
+typedef struct
+{
+  gsl_vector_long_double vector;
+} _gsl_vector_long_double_view;
+
+typedef _gsl_vector_long_double_view gsl_vector_long_double_view;
+
+typedef struct
+{
+  gsl_vector_long_double vector;
+} _gsl_vector_long_double_const_view;
+
+typedef const _gsl_vector_long_double_const_view gsl_vector_long_double_const_view;
+
+
+/* Allocation */
+
+gsl_vector_long_double *gsl_vector_long_double_alloc (const size_t n);
+gsl_vector_long_double *gsl_vector_long_double_calloc (const size_t n);
+
+gsl_vector_long_double *gsl_vector_long_double_alloc_from_block (gsl_block_long_double * b,
+                                                     const size_t offset, 
+                                                     const size_t n, 
+                                                     const size_t stride);
+
+gsl_vector_long_double *gsl_vector_long_double_alloc_from_vector (gsl_vector_long_double * v,
+                                                      const size_t offset, 
+                                                      const size_t n, 
+                                                      const size_t stride);
+
+void gsl_vector_long_double_free (gsl_vector_long_double * v);
+
+/* Views */
+
+_gsl_vector_long_double_view 
+gsl_vector_long_double_view_array (long double *v, size_t n);
+
+_gsl_vector_long_double_view 
+gsl_vector_long_double_view_array_with_stride (long double *base,
+                                         size_t stride,
+                                         size_t n);
+
+_gsl_vector_long_double_const_view 
+gsl_vector_long_double_const_view_array (const long double *v, size_t n);
+
+_gsl_vector_long_double_const_view 
+gsl_vector_long_double_const_view_array_with_stride (const long double *base,
+                                               size_t stride,
+                                               size_t n);
+
+_gsl_vector_long_double_view 
+gsl_vector_long_double_subvector (gsl_vector_long_double *v, 
+                            size_t i, 
+                            size_t n);
+
+_gsl_vector_long_double_view 
+gsl_vector_long_double_subvector_with_stride (gsl_vector_long_double *v, 
+                                        size_t i,
+                                        size_t stride,
+                                        size_t n);
+
+_gsl_vector_long_double_const_view 
+gsl_vector_long_double_const_subvector (const gsl_vector_long_double *v, 
+                                  size_t i, 
+                                  size_t n);
+
+_gsl_vector_long_double_const_view 
+gsl_vector_long_double_const_subvector_with_stride (const gsl_vector_long_double *v, 
+                                              size_t i, 
+                                              size_t stride,
+                                              size_t n);
+
+/* Operations */
+
+void gsl_vector_long_double_set_zero (gsl_vector_long_double * v);
+void gsl_vector_long_double_set_all (gsl_vector_long_double * v, long double x);
+int gsl_vector_long_double_set_basis (gsl_vector_long_double * v, size_t i);
+
+int gsl_vector_long_double_fread (FILE * stream, gsl_vector_long_double * v);
+int gsl_vector_long_double_fwrite (FILE * stream, const gsl_vector_long_double * v);
+int gsl_vector_long_double_fscanf (FILE * stream, gsl_vector_long_double * v);
+int gsl_vector_long_double_fprintf (FILE * stream, const gsl_vector_long_double * v,
+                              const char *format);
+
+int gsl_vector_long_double_memcpy (gsl_vector_long_double * dest, const gsl_vector_long_double * src);
+
+int gsl_vector_long_double_reverse (gsl_vector_long_double * v);
+
+int gsl_vector_long_double_swap (gsl_vector_long_double * v, gsl_vector_long_double * w);
+int gsl_vector_long_double_swap_elements (gsl_vector_long_double * v, const size_t i, const size_t j);
+
+long double gsl_vector_long_double_max (const gsl_vector_long_double * v);
+long double gsl_vector_long_double_min (const gsl_vector_long_double * v);
+void gsl_vector_long_double_minmax (const gsl_vector_long_double * v, long double * min_out, long double * max_out);
+
+size_t gsl_vector_long_double_max_index (const gsl_vector_long_double * v);
+size_t gsl_vector_long_double_min_index (const gsl_vector_long_double * v);
+void gsl_vector_long_double_minmax_index (const gsl_vector_long_double * v, size_t * imin, size_t * imax);
+
+int gsl_vector_long_double_add (gsl_vector_long_double * a, const gsl_vector_long_double * b);
+int gsl_vector_long_double_sub (gsl_vector_long_double * a, const gsl_vector_long_double * b);
+int gsl_vector_long_double_mul (gsl_vector_long_double * a, const gsl_vector_long_double * b);
+int gsl_vector_long_double_div (gsl_vector_long_double * a, const gsl_vector_long_double * b);
+int gsl_vector_long_double_scale (gsl_vector_long_double * a, const double x);
+int gsl_vector_long_double_add_constant (gsl_vector_long_double * a, const double x);
+
+int gsl_vector_long_double_equal (const gsl_vector_long_double * u, 
+                            const gsl_vector_long_double * v);
+
+int gsl_vector_long_double_isnull (const gsl_vector_long_double * v);
+int gsl_vector_long_double_ispos (const gsl_vector_long_double * v);
+int gsl_vector_long_double_isneg (const gsl_vector_long_double * v);
+int gsl_vector_long_double_isnonneg (const gsl_vector_long_double * v);
+
+INLINE_DECL long double gsl_vector_long_double_get (const gsl_vector_long_double * v, const size_t i);
+INLINE_DECL void gsl_vector_long_double_set (gsl_vector_long_double * v, const size_t i, long double x);
+INLINE_DECL long double * gsl_vector_long_double_ptr (gsl_vector_long_double * v, const size_t i);
+INLINE_DECL const long double * gsl_vector_long_double_const_ptr (const gsl_vector_long_double * v, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+long double
+gsl_vector_long_double_get (const gsl_vector_long_double * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, 0);
+    }
+#endif
+  return v->data[i * v->stride];
+}
+
+INLINE_FUN
+void
+gsl_vector_long_double_set (gsl_vector_long_double * v, const size_t i, long double x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VOID ("index out of range", GSL_EINVAL);
+    }
+#endif
+  v->data[i * v->stride] = x;
+}
+
+INLINE_FUN
+long double *
+gsl_vector_long_double_ptr (gsl_vector_long_double * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (long double *) (v->data + i * v->stride);
+}
+
+INLINE_FUN
+const long double *
+gsl_vector_long_double_const_ptr (const gsl_vector_long_double * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (const long double *) (v->data + i * v->stride);
+}
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_VECTOR_LONG_DOUBLE_H__ */
+
+

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_short.h b/util/X86LINUX64/include/gsl/gsl_vector_short.h
new file mode 100644 (file)
index 0000000..4f41f7a
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_short.h
@@ -0,0 +1,230 @@
+/* vector/gsl_vector_short.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_VECTOR_SHORT_H__
+#define __GSL_VECTOR_SHORT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_block_short.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size;
+  size_t stride;
+  short *data;
+  gsl_block_short *block;
+  int owner;
+} 
+gsl_vector_short;
+
+typedef struct
+{
+  gsl_vector_short vector;
+} _gsl_vector_short_view;
+
+typedef _gsl_vector_short_view gsl_vector_short_view;
+
+typedef struct
+{
+  gsl_vector_short vector;
+} _gsl_vector_short_const_view;
+
+typedef const _gsl_vector_short_const_view gsl_vector_short_const_view;
+
+
+/* Allocation */
+
+gsl_vector_short *gsl_vector_short_alloc (const size_t n);
+gsl_vector_short *gsl_vector_short_calloc (const size_t n);
+
+gsl_vector_short *gsl_vector_short_alloc_from_block (gsl_block_short * b,
+                                                     const size_t offset, 
+                                                     const size_t n, 
+                                                     const size_t stride);
+
+gsl_vector_short *gsl_vector_short_alloc_from_vector (gsl_vector_short * v,
+                                                      const size_t offset, 
+                                                      const size_t n, 
+                                                      const size_t stride);
+
+void gsl_vector_short_free (gsl_vector_short * v);
+
+/* Views */
+
+_gsl_vector_short_view 
+gsl_vector_short_view_array (short *v, size_t n);
+
+_gsl_vector_short_view 
+gsl_vector_short_view_array_with_stride (short *base,
+                                         size_t stride,
+                                         size_t n);
+
+_gsl_vector_short_const_view 
+gsl_vector_short_const_view_array (const short *v, size_t n);
+
+_gsl_vector_short_const_view 
+gsl_vector_short_const_view_array_with_stride (const short *base,
+                                               size_t stride,
+                                               size_t n);
+
+_gsl_vector_short_view 
+gsl_vector_short_subvector (gsl_vector_short *v, 
+                            size_t i, 
+                            size_t n);
+
+_gsl_vector_short_view 
+gsl_vector_short_subvector_with_stride (gsl_vector_short *v, 
+                                        size_t i,
+                                        size_t stride,
+                                        size_t n);
+
+_gsl_vector_short_const_view 
+gsl_vector_short_const_subvector (const gsl_vector_short *v, 
+                                  size_t i, 
+                                  size_t n);
+
+_gsl_vector_short_const_view 
+gsl_vector_short_const_subvector_with_stride (const gsl_vector_short *v, 
+                                              size_t i, 
+                                              size_t stride,
+                                              size_t n);
+
+/* Operations */
+
+void gsl_vector_short_set_zero (gsl_vector_short * v);
+void gsl_vector_short_set_all (gsl_vector_short * v, short x);
+int gsl_vector_short_set_basis (gsl_vector_short * v, size_t i);
+
+int gsl_vector_short_fread (FILE * stream, gsl_vector_short * v);
+int gsl_vector_short_fwrite (FILE * stream, const gsl_vector_short * v);
+int gsl_vector_short_fscanf (FILE * stream, gsl_vector_short * v);
+int gsl_vector_short_fprintf (FILE * stream, const gsl_vector_short * v,
+                              const char *format);
+
+int gsl_vector_short_memcpy (gsl_vector_short * dest, const gsl_vector_short * src);
+
+int gsl_vector_short_reverse (gsl_vector_short * v);
+
+int gsl_vector_short_swap (gsl_vector_short * v, gsl_vector_short * w);
+int gsl_vector_short_swap_elements (gsl_vector_short * v, const size_t i, const size_t j);
+
+short gsl_vector_short_max (const gsl_vector_short * v);
+short gsl_vector_short_min (const gsl_vector_short * v);
+void gsl_vector_short_minmax (const gsl_vector_short * v, short * min_out, short * max_out);
+
+size_t gsl_vector_short_max_index (const gsl_vector_short * v);
+size_t gsl_vector_short_min_index (const gsl_vector_short * v);
+void gsl_vector_short_minmax_index (const gsl_vector_short * v, size_t * imin, size_t * imax);
+
+int gsl_vector_short_add (gsl_vector_short * a, const gsl_vector_short * b);
+int gsl_vector_short_sub (gsl_vector_short * a, const gsl_vector_short * b);
+int gsl_vector_short_mul (gsl_vector_short * a, const gsl_vector_short * b);
+int gsl_vector_short_div (gsl_vector_short * a, const gsl_vector_short * b);
+int gsl_vector_short_scale (gsl_vector_short * a, const double x);
+int gsl_vector_short_add_constant (gsl_vector_short * a, const double x);
+
+int gsl_vector_short_equal (const gsl_vector_short * u, 
+                            const gsl_vector_short * v);
+
+int gsl_vector_short_isnull (const gsl_vector_short * v);
+int gsl_vector_short_ispos (const gsl_vector_short * v);
+int gsl_vector_short_isneg (const gsl_vector_short * v);
+int gsl_vector_short_isnonneg (const gsl_vector_short * v);
+
+INLINE_DECL short gsl_vector_short_get (const gsl_vector_short * v, const size_t i);
+INLINE_DECL void gsl_vector_short_set (gsl_vector_short * v, const size_t i, short x);
+INLINE_DECL short * gsl_vector_short_ptr (gsl_vector_short * v, const size_t i);
+INLINE_DECL const short * gsl_vector_short_const_ptr (const gsl_vector_short * v, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+short
+gsl_vector_short_get (const gsl_vector_short * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, 0);
+    }
+#endif
+  return v->data[i * v->stride];
+}
+
+INLINE_FUN
+void
+gsl_vector_short_set (gsl_vector_short * v, const size_t i, short x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VOID ("index out of range", GSL_EINVAL);
+    }
+#endif
+  v->data[i * v->stride] = x;
+}
+
+INLINE_FUN
+short *
+gsl_vector_short_ptr (gsl_vector_short * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (short *) (v->data + i * v->stride);
+}
+
+INLINE_FUN
+const short *
+gsl_vector_short_const_ptr (const gsl_vector_short * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (const short *) (v->data + i * v->stride);
+}
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_VECTOR_SHORT_H__ */
+
+

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_uchar.h b/util/X86LINUX64/include/gsl/gsl_vector_uchar.h
new file mode 100644 (file)
index 0000000..b27096d
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_uchar.h
@@ -0,0 +1,230 @@
+/* vector/gsl_vector_uchar.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_VECTOR_UCHAR_H__
+#define __GSL_VECTOR_UCHAR_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_block_uchar.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size;
+  size_t stride;
+  unsigned char *data;
+  gsl_block_uchar *block;
+  int owner;
+} 
+gsl_vector_uchar;
+
+typedef struct
+{
+  gsl_vector_uchar vector;
+} _gsl_vector_uchar_view;
+
+typedef _gsl_vector_uchar_view gsl_vector_uchar_view;
+
+typedef struct
+{
+  gsl_vector_uchar vector;
+} _gsl_vector_uchar_const_view;
+
+typedef const _gsl_vector_uchar_const_view gsl_vector_uchar_const_view;
+
+
+/* Allocation */
+
+gsl_vector_uchar *gsl_vector_uchar_alloc (const size_t n);
+gsl_vector_uchar *gsl_vector_uchar_calloc (const size_t n);
+
+gsl_vector_uchar *gsl_vector_uchar_alloc_from_block (gsl_block_uchar * b,
+                                                     const size_t offset, 
+                                                     const size_t n, 
+                                                     const size_t stride);
+
+gsl_vector_uchar *gsl_vector_uchar_alloc_from_vector (gsl_vector_uchar * v,
+                                                      const size_t offset, 
+                                                      const size_t n, 
+                                                      const size_t stride);
+
+void gsl_vector_uchar_free (gsl_vector_uchar * v);
+
+/* Views */
+
+_gsl_vector_uchar_view 
+gsl_vector_uchar_view_array (unsigned char *v, size_t n);
+
+_gsl_vector_uchar_view 
+gsl_vector_uchar_view_array_with_stride (unsigned char *base,
+                                         size_t stride,
+                                         size_t n);
+
+_gsl_vector_uchar_const_view 
+gsl_vector_uchar_const_view_array (const unsigned char *v, size_t n);
+
+_gsl_vector_uchar_const_view 
+gsl_vector_uchar_const_view_array_with_stride (const unsigned char *base,
+                                               size_t stride,
+                                               size_t n);
+
+_gsl_vector_uchar_view 
+gsl_vector_uchar_subvector (gsl_vector_uchar *v, 
+                            size_t i, 
+                            size_t n);
+
+_gsl_vector_uchar_view 
+gsl_vector_uchar_subvector_with_stride (gsl_vector_uchar *v, 
+                                        size_t i,
+                                        size_t stride,
+                                        size_t n);
+
+_gsl_vector_uchar_const_view 
+gsl_vector_uchar_const_subvector (const gsl_vector_uchar *v, 
+                                  size_t i, 
+                                  size_t n);
+
+_gsl_vector_uchar_const_view 
+gsl_vector_uchar_const_subvector_with_stride (const gsl_vector_uchar *v, 
+                                              size_t i, 
+                                              size_t stride,
+                                              size_t n);
+
+/* Operations */
+
+void gsl_vector_uchar_set_zero (gsl_vector_uchar * v);
+void gsl_vector_uchar_set_all (gsl_vector_uchar * v, unsigned char x);
+int gsl_vector_uchar_set_basis (gsl_vector_uchar * v, size_t i);
+
+int gsl_vector_uchar_fread (FILE * stream, gsl_vector_uchar * v);
+int gsl_vector_uchar_fwrite (FILE * stream, const gsl_vector_uchar * v);
+int gsl_vector_uchar_fscanf (FILE * stream, gsl_vector_uchar * v);
+int gsl_vector_uchar_fprintf (FILE * stream, const gsl_vector_uchar * v,
+                              const char *format);
+
+int gsl_vector_uchar_memcpy (gsl_vector_uchar * dest, const gsl_vector_uchar * src);
+
+int gsl_vector_uchar_reverse (gsl_vector_uchar * v);
+
+int gsl_vector_uchar_swap (gsl_vector_uchar * v, gsl_vector_uchar * w);
+int gsl_vector_uchar_swap_elements (gsl_vector_uchar * v, const size_t i, const size_t j);
+
+unsigned char gsl_vector_uchar_max (const gsl_vector_uchar * v);
+unsigned char gsl_vector_uchar_min (const gsl_vector_uchar * v);
+void gsl_vector_uchar_minmax (const gsl_vector_uchar * v, unsigned char * min_out, unsigned char * max_out);
+
+size_t gsl_vector_uchar_max_index (const gsl_vector_uchar * v);
+size_t gsl_vector_uchar_min_index (const gsl_vector_uchar * v);
+void gsl_vector_uchar_minmax_index (const gsl_vector_uchar * v, size_t * imin, size_t * imax);
+
+int gsl_vector_uchar_add (gsl_vector_uchar * a, const gsl_vector_uchar * b);
+int gsl_vector_uchar_sub (gsl_vector_uchar * a, const gsl_vector_uchar * b);
+int gsl_vector_uchar_mul (gsl_vector_uchar * a, const gsl_vector_uchar * b);
+int gsl_vector_uchar_div (gsl_vector_uchar * a, const gsl_vector_uchar * b);
+int gsl_vector_uchar_scale (gsl_vector_uchar * a, const double x);
+int gsl_vector_uchar_add_constant (gsl_vector_uchar * a, const double x);
+
+int gsl_vector_uchar_equal (const gsl_vector_uchar * u, 
+                            const gsl_vector_uchar * v);
+
+int gsl_vector_uchar_isnull (const gsl_vector_uchar * v);
+int gsl_vector_uchar_ispos (const gsl_vector_uchar * v);
+int gsl_vector_uchar_isneg (const gsl_vector_uchar * v);
+int gsl_vector_uchar_isnonneg (const gsl_vector_uchar * v);
+
+INLINE_DECL unsigned char gsl_vector_uchar_get (const gsl_vector_uchar * v, const size_t i);
+INLINE_DECL void gsl_vector_uchar_set (gsl_vector_uchar * v, const size_t i, unsigned char x);
+INLINE_DECL unsigned char * gsl_vector_uchar_ptr (gsl_vector_uchar * v, const size_t i);
+INLINE_DECL const unsigned char * gsl_vector_uchar_const_ptr (const gsl_vector_uchar * v, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+unsigned char
+gsl_vector_uchar_get (const gsl_vector_uchar * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, 0);
+    }
+#endif
+  return v->data[i * v->stride];
+}
+
+INLINE_FUN
+void
+gsl_vector_uchar_set (gsl_vector_uchar * v, const size_t i, unsigned char x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VOID ("index out of range", GSL_EINVAL);
+    }
+#endif
+  v->data[i * v->stride] = x;
+}
+
+INLINE_FUN
+unsigned char *
+gsl_vector_uchar_ptr (gsl_vector_uchar * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (unsigned char *) (v->data + i * v->stride);
+}
+
+INLINE_FUN
+const unsigned char *
+gsl_vector_uchar_const_ptr (const gsl_vector_uchar * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (const unsigned char *) (v->data + i * v->stride);
+}
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_VECTOR_UCHAR_H__ */
+
+

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_uint.h b/util/X86LINUX64/include/gsl/gsl_vector_uint.h
new file mode 100644 (file)
index 0000000..d2f6cb3
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_uint.h
@@ -0,0 +1,230 @@
+/* vector/gsl_vector_uint.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_VECTOR_UINT_H__
+#define __GSL_VECTOR_UINT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_block_uint.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size;
+  size_t stride;
+  unsigned int *data;
+  gsl_block_uint *block;
+  int owner;
+} 
+gsl_vector_uint;
+
+typedef struct
+{
+  gsl_vector_uint vector;
+} _gsl_vector_uint_view;
+
+typedef _gsl_vector_uint_view gsl_vector_uint_view;
+
+typedef struct
+{
+  gsl_vector_uint vector;
+} _gsl_vector_uint_const_view;
+
+typedef const _gsl_vector_uint_const_view gsl_vector_uint_const_view;
+
+
+/* Allocation */
+
+gsl_vector_uint *gsl_vector_uint_alloc (const size_t n);
+gsl_vector_uint *gsl_vector_uint_calloc (const size_t n);
+
+gsl_vector_uint *gsl_vector_uint_alloc_from_block (gsl_block_uint * b,
+                                                     const size_t offset, 
+                                                     const size_t n, 
+                                                     const size_t stride);
+
+gsl_vector_uint *gsl_vector_uint_alloc_from_vector (gsl_vector_uint * v,
+                                                      const size_t offset, 
+                                                      const size_t n, 
+                                                      const size_t stride);
+
+void gsl_vector_uint_free (gsl_vector_uint * v);
+
+/* Views */
+
+_gsl_vector_uint_view 
+gsl_vector_uint_view_array (unsigned int *v, size_t n);
+
+_gsl_vector_uint_view 
+gsl_vector_uint_view_array_with_stride (unsigned int *base,
+                                         size_t stride,
+                                         size_t n);
+
+_gsl_vector_uint_const_view 
+gsl_vector_uint_const_view_array (const unsigned int *v, size_t n);
+
+_gsl_vector_uint_const_view 
+gsl_vector_uint_const_view_array_with_stride (const unsigned int *base,
+                                               size_t stride,
+                                               size_t n);
+
+_gsl_vector_uint_view 
+gsl_vector_uint_subvector (gsl_vector_uint *v, 
+                            size_t i, 
+                            size_t n);
+
+_gsl_vector_uint_view 
+gsl_vector_uint_subvector_with_stride (gsl_vector_uint *v, 
+                                        size_t i,
+                                        size_t stride,
+                                        size_t n);
+
+_gsl_vector_uint_const_view 
+gsl_vector_uint_const_subvector (const gsl_vector_uint *v, 
+                                  size_t i, 
+                                  size_t n);
+
+_gsl_vector_uint_const_view 
+gsl_vector_uint_const_subvector_with_stride (const gsl_vector_uint *v, 
+                                              size_t i, 
+                                              size_t stride,
+                                              size_t n);
+
+/* Operations */
+
+void gsl_vector_uint_set_zero (gsl_vector_uint * v);
+void gsl_vector_uint_set_all (gsl_vector_uint * v, unsigned int x);
+int gsl_vector_uint_set_basis (gsl_vector_uint * v, size_t i);
+
+int gsl_vector_uint_fread (FILE * stream, gsl_vector_uint * v);
+int gsl_vector_uint_fwrite (FILE * stream, const gsl_vector_uint * v);
+int gsl_vector_uint_fscanf (FILE * stream, gsl_vector_uint * v);
+int gsl_vector_uint_fprintf (FILE * stream, const gsl_vector_uint * v,
+                              const char *format);
+
+int gsl_vector_uint_memcpy (gsl_vector_uint * dest, const gsl_vector_uint * src);
+
+int gsl_vector_uint_reverse (gsl_vector_uint * v);
+
+int gsl_vector_uint_swap (gsl_vector_uint * v, gsl_vector_uint * w);
+int gsl_vector_uint_swap_elements (gsl_vector_uint * v, const size_t i, const size_t j);
+
+unsigned int gsl_vector_uint_max (const gsl_vector_uint * v);
+unsigned int gsl_vector_uint_min (const gsl_vector_uint * v);
+void gsl_vector_uint_minmax (const gsl_vector_uint * v, unsigned int * min_out, unsigned int * max_out);
+
+size_t gsl_vector_uint_max_index (const gsl_vector_uint * v);
+size_t gsl_vector_uint_min_index (const gsl_vector_uint * v);
+void gsl_vector_uint_minmax_index (const gsl_vector_uint * v, size_t * imin, size_t * imax);
+
+int gsl_vector_uint_add (gsl_vector_uint * a, const gsl_vector_uint * b);
+int gsl_vector_uint_sub (gsl_vector_uint * a, const gsl_vector_uint * b);
+int gsl_vector_uint_mul (gsl_vector_uint * a, const gsl_vector_uint * b);
+int gsl_vector_uint_div (gsl_vector_uint * a, const gsl_vector_uint * b);
+int gsl_vector_uint_scale (gsl_vector_uint * a, const double x);
+int gsl_vector_uint_add_constant (gsl_vector_uint * a, const double x);
+
+int gsl_vector_uint_equal (const gsl_vector_uint * u, 
+                            const gsl_vector_uint * v);
+
+int gsl_vector_uint_isnull (const gsl_vector_uint * v);
+int gsl_vector_uint_ispos (const gsl_vector_uint * v);
+int gsl_vector_uint_isneg (const gsl_vector_uint * v);
+int gsl_vector_uint_isnonneg (const gsl_vector_uint * v);
+
+INLINE_DECL unsigned int gsl_vector_uint_get (const gsl_vector_uint * v, const size_t i);
+INLINE_DECL void gsl_vector_uint_set (gsl_vector_uint * v, const size_t i, unsigned int x);
+INLINE_DECL unsigned int * gsl_vector_uint_ptr (gsl_vector_uint * v, const size_t i);
+INLINE_DECL const unsigned int * gsl_vector_uint_const_ptr (const gsl_vector_uint * v, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+unsigned int
+gsl_vector_uint_get (const gsl_vector_uint * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, 0);
+    }
+#endif
+  return v->data[i * v->stride];
+}
+
+INLINE_FUN
+void
+gsl_vector_uint_set (gsl_vector_uint * v, const size_t i, unsigned int x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VOID ("index out of range", GSL_EINVAL);
+    }
+#endif
+  v->data[i * v->stride] = x;
+}
+
+INLINE_FUN
+unsigned int *
+gsl_vector_uint_ptr (gsl_vector_uint * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (unsigned int *) (v->data + i * v->stride);
+}
+
+INLINE_FUN
+const unsigned int *
+gsl_vector_uint_const_ptr (const gsl_vector_uint * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (const unsigned int *) (v->data + i * v->stride);
+}
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_VECTOR_UINT_H__ */
+
+

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_ulong.h b/util/X86LINUX64/include/gsl/gsl_vector_ulong.h
new file mode 100644 (file)
index 0000000..01bf242
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_ulong.h
@@ -0,0 +1,230 @@
+/* vector/gsl_vector_ulong.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_VECTOR_ULONG_H__
+#define __GSL_VECTOR_ULONG_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_block_ulong.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size;
+  size_t stride;
+  unsigned long *data;
+  gsl_block_ulong *block;
+  int owner;
+} 
+gsl_vector_ulong;
+
+typedef struct
+{
+  gsl_vector_ulong vector;
+} _gsl_vector_ulong_view;
+
+typedef _gsl_vector_ulong_view gsl_vector_ulong_view;
+
+typedef struct
+{
+  gsl_vector_ulong vector;
+} _gsl_vector_ulong_const_view;
+
+typedef const _gsl_vector_ulong_const_view gsl_vector_ulong_const_view;
+
+
+/* Allocation */
+
+gsl_vector_ulong *gsl_vector_ulong_alloc (const size_t n);
+gsl_vector_ulong *gsl_vector_ulong_calloc (const size_t n);
+
+gsl_vector_ulong *gsl_vector_ulong_alloc_from_block (gsl_block_ulong * b,
+                                                     const size_t offset, 
+                                                     const size_t n, 
+                                                     const size_t stride);
+
+gsl_vector_ulong *gsl_vector_ulong_alloc_from_vector (gsl_vector_ulong * v,
+                                                      const size_t offset, 
+                                                      const size_t n, 
+                                                      const size_t stride);
+
+void gsl_vector_ulong_free (gsl_vector_ulong * v);
+
+/* Views */
+
+_gsl_vector_ulong_view 
+gsl_vector_ulong_view_array (unsigned long *v, size_t n);
+
+_gsl_vector_ulong_view 
+gsl_vector_ulong_view_array_with_stride (unsigned long *base,
+                                         size_t stride,
+                                         size_t n);
+
+_gsl_vector_ulong_const_view 
+gsl_vector_ulong_const_view_array (const unsigned long *v, size_t n);
+
+_gsl_vector_ulong_const_view 
+gsl_vector_ulong_const_view_array_with_stride (const unsigned long *base,
+                                               size_t stride,
+                                               size_t n);
+
+_gsl_vector_ulong_view 
+gsl_vector_ulong_subvector (gsl_vector_ulong *v, 
+                            size_t i, 
+                            size_t n);
+
+_gsl_vector_ulong_view 
+gsl_vector_ulong_subvector_with_stride (gsl_vector_ulong *v, 
+                                        size_t i,
+                                        size_t stride,
+                                        size_t n);
+
+_gsl_vector_ulong_const_view 
+gsl_vector_ulong_const_subvector (const gsl_vector_ulong *v, 
+                                  size_t i, 
+                                  size_t n);
+
+_gsl_vector_ulong_const_view 
+gsl_vector_ulong_const_subvector_with_stride (const gsl_vector_ulong *v, 
+                                              size_t i, 
+                                              size_t stride,
+                                              size_t n);
+
+/* Operations */
+
+void gsl_vector_ulong_set_zero (gsl_vector_ulong * v);
+void gsl_vector_ulong_set_all (gsl_vector_ulong * v, unsigned long x);
+int gsl_vector_ulong_set_basis (gsl_vector_ulong * v, size_t i);
+
+int gsl_vector_ulong_fread (FILE * stream, gsl_vector_ulong * v);
+int gsl_vector_ulong_fwrite (FILE * stream, const gsl_vector_ulong * v);
+int gsl_vector_ulong_fscanf (FILE * stream, gsl_vector_ulong * v);
+int gsl_vector_ulong_fprintf (FILE * stream, const gsl_vector_ulong * v,
+                              const char *format);
+
+int gsl_vector_ulong_memcpy (gsl_vector_ulong * dest, const gsl_vector_ulong * src);
+
+int gsl_vector_ulong_reverse (gsl_vector_ulong * v);
+
+int gsl_vector_ulong_swap (gsl_vector_ulong * v, gsl_vector_ulong * w);
+int gsl_vector_ulong_swap_elements (gsl_vector_ulong * v, const size_t i, const size_t j);
+
+unsigned long gsl_vector_ulong_max (const gsl_vector_ulong * v);
+unsigned long gsl_vector_ulong_min (const gsl_vector_ulong * v);
+void gsl_vector_ulong_minmax (const gsl_vector_ulong * v, unsigned long * min_out, unsigned long * max_out);
+
+size_t gsl_vector_ulong_max_index (const gsl_vector_ulong * v);
+size_t gsl_vector_ulong_min_index (const gsl_vector_ulong * v);
+void gsl_vector_ulong_minmax_index (const gsl_vector_ulong * v, size_t * imin, size_t * imax);
+
+int gsl_vector_ulong_add (gsl_vector_ulong * a, const gsl_vector_ulong * b);
+int gsl_vector_ulong_sub (gsl_vector_ulong * a, const gsl_vector_ulong * b);
+int gsl_vector_ulong_mul (gsl_vector_ulong * a, const gsl_vector_ulong * b);
+int gsl_vector_ulong_div (gsl_vector_ulong * a, const gsl_vector_ulong * b);
+int gsl_vector_ulong_scale (gsl_vector_ulong * a, const double x);
+int gsl_vector_ulong_add_constant (gsl_vector_ulong * a, const double x);
+
+int gsl_vector_ulong_equal (const gsl_vector_ulong * u, 
+                            const gsl_vector_ulong * v);
+
+int gsl_vector_ulong_isnull (const gsl_vector_ulong * v);
+int gsl_vector_ulong_ispos (const gsl_vector_ulong * v);
+int gsl_vector_ulong_isneg (const gsl_vector_ulong * v);
+int gsl_vector_ulong_isnonneg (const gsl_vector_ulong * v);
+
+INLINE_DECL unsigned long gsl_vector_ulong_get (const gsl_vector_ulong * v, const size_t i);
+INLINE_DECL void gsl_vector_ulong_set (gsl_vector_ulong * v, const size_t i, unsigned long x);
+INLINE_DECL unsigned long * gsl_vector_ulong_ptr (gsl_vector_ulong * v, const size_t i);
+INLINE_DECL const unsigned long * gsl_vector_ulong_const_ptr (const gsl_vector_ulong * v, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+unsigned long
+gsl_vector_ulong_get (const gsl_vector_ulong * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, 0);
+    }
+#endif
+  return v->data[i * v->stride];
+}
+
+INLINE_FUN
+void
+gsl_vector_ulong_set (gsl_vector_ulong * v, const size_t i, unsigned long x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VOID ("index out of range", GSL_EINVAL);
+    }
+#endif
+  v->data[i * v->stride] = x;
+}
+
+INLINE_FUN
+unsigned long *
+gsl_vector_ulong_ptr (gsl_vector_ulong * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (unsigned long *) (v->data + i * v->stride);
+}
+
+INLINE_FUN
+const unsigned long *
+gsl_vector_ulong_const_ptr (const gsl_vector_ulong * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (const unsigned long *) (v->data + i * v->stride);
+}
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_VECTOR_ULONG_H__ */
+
+

diff --git a/util/X86LINUX64/include/gsl/gsl_vector_ushort.h b/util/X86LINUX64/include/gsl/gsl_vector_ushort.h
new file mode 100644 (file)
index 0000000..7b7e664
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_vector_ushort.h
@@ -0,0 +1,230 @@
+/* vector/gsl_vector_ushort.h
+ * 
+ * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_VECTOR_USHORT_H__
+#define __GSL_VECTOR_USHORT_H__
+
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_inline.h>
+#include <gsl/gsl_check_range.h>
+#include <gsl/gsl_block_ushort.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+
+__BEGIN_DECLS
+
+typedef struct 
+{
+  size_t size;
+  size_t stride;
+  unsigned short *data;
+  gsl_block_ushort *block;
+  int owner;
+} 
+gsl_vector_ushort;
+
+typedef struct
+{
+  gsl_vector_ushort vector;
+} _gsl_vector_ushort_view;
+
+typedef _gsl_vector_ushort_view gsl_vector_ushort_view;
+
+typedef struct
+{
+  gsl_vector_ushort vector;
+} _gsl_vector_ushort_const_view;
+
+typedef const _gsl_vector_ushort_const_view gsl_vector_ushort_const_view;
+
+
+/* Allocation */
+
+gsl_vector_ushort *gsl_vector_ushort_alloc (const size_t n);
+gsl_vector_ushort *gsl_vector_ushort_calloc (const size_t n);
+
+gsl_vector_ushort *gsl_vector_ushort_alloc_from_block (gsl_block_ushort * b,
+                                                     const size_t offset, 
+                                                     const size_t n, 
+                                                     const size_t stride);
+
+gsl_vector_ushort *gsl_vector_ushort_alloc_from_vector (gsl_vector_ushort * v,
+                                                      const size_t offset, 
+                                                      const size_t n, 
+                                                      const size_t stride);
+
+void gsl_vector_ushort_free (gsl_vector_ushort * v);
+
+/* Views */
+
+_gsl_vector_ushort_view 
+gsl_vector_ushort_view_array (unsigned short *v, size_t n);
+
+_gsl_vector_ushort_view 
+gsl_vector_ushort_view_array_with_stride (unsigned short *base,
+                                         size_t stride,
+                                         size_t n);
+
+_gsl_vector_ushort_const_view 
+gsl_vector_ushort_const_view_array (const unsigned short *v, size_t n);
+
+_gsl_vector_ushort_const_view 
+gsl_vector_ushort_const_view_array_with_stride (const unsigned short *base,
+                                               size_t stride,
+                                               size_t n);
+
+_gsl_vector_ushort_view 
+gsl_vector_ushort_subvector (gsl_vector_ushort *v, 
+                            size_t i, 
+                            size_t n);
+
+_gsl_vector_ushort_view 
+gsl_vector_ushort_subvector_with_stride (gsl_vector_ushort *v, 
+                                        size_t i,
+                                        size_t stride,
+                                        size_t n);
+
+_gsl_vector_ushort_const_view 
+gsl_vector_ushort_const_subvector (const gsl_vector_ushort *v, 
+                                  size_t i, 
+                                  size_t n);
+
+_gsl_vector_ushort_const_view 
+gsl_vector_ushort_const_subvector_with_stride (const gsl_vector_ushort *v, 
+                                              size_t i, 
+                                              size_t stride,
+                                              size_t n);
+
+/* Operations */
+
+void gsl_vector_ushort_set_zero (gsl_vector_ushort * v);
+void gsl_vector_ushort_set_all (gsl_vector_ushort * v, unsigned short x);
+int gsl_vector_ushort_set_basis (gsl_vector_ushort * v, size_t i);
+
+int gsl_vector_ushort_fread (FILE * stream, gsl_vector_ushort * v);
+int gsl_vector_ushort_fwrite (FILE * stream, const gsl_vector_ushort * v);
+int gsl_vector_ushort_fscanf (FILE * stream, gsl_vector_ushort * v);
+int gsl_vector_ushort_fprintf (FILE * stream, const gsl_vector_ushort * v,
+                              const char *format);
+
+int gsl_vector_ushort_memcpy (gsl_vector_ushort * dest, const gsl_vector_ushort * src);
+
+int gsl_vector_ushort_reverse (gsl_vector_ushort * v);
+
+int gsl_vector_ushort_swap (gsl_vector_ushort * v, gsl_vector_ushort * w);
+int gsl_vector_ushort_swap_elements (gsl_vector_ushort * v, const size_t i, const size_t j);
+
+unsigned short gsl_vector_ushort_max (const gsl_vector_ushort * v);
+unsigned short gsl_vector_ushort_min (const gsl_vector_ushort * v);
+void gsl_vector_ushort_minmax (const gsl_vector_ushort * v, unsigned short * min_out, unsigned short * max_out);
+
+size_t gsl_vector_ushort_max_index (const gsl_vector_ushort * v);
+size_t gsl_vector_ushort_min_index (const gsl_vector_ushort * v);
+void gsl_vector_ushort_minmax_index (const gsl_vector_ushort * v, size_t * imin, size_t * imax);
+
+int gsl_vector_ushort_add (gsl_vector_ushort * a, const gsl_vector_ushort * b);
+int gsl_vector_ushort_sub (gsl_vector_ushort * a, const gsl_vector_ushort * b);
+int gsl_vector_ushort_mul (gsl_vector_ushort * a, const gsl_vector_ushort * b);
+int gsl_vector_ushort_div (gsl_vector_ushort * a, const gsl_vector_ushort * b);
+int gsl_vector_ushort_scale (gsl_vector_ushort * a, const double x);
+int gsl_vector_ushort_add_constant (gsl_vector_ushort * a, const double x);
+
+int gsl_vector_ushort_equal (const gsl_vector_ushort * u, 
+                            const gsl_vector_ushort * v);
+
+int gsl_vector_ushort_isnull (const gsl_vector_ushort * v);
+int gsl_vector_ushort_ispos (const gsl_vector_ushort * v);
+int gsl_vector_ushort_isneg (const gsl_vector_ushort * v);
+int gsl_vector_ushort_isnonneg (const gsl_vector_ushort * v);
+
+INLINE_DECL unsigned short gsl_vector_ushort_get (const gsl_vector_ushort * v, const size_t i);
+INLINE_DECL void gsl_vector_ushort_set (gsl_vector_ushort * v, const size_t i, unsigned short x);
+INLINE_DECL unsigned short * gsl_vector_ushort_ptr (gsl_vector_ushort * v, const size_t i);
+INLINE_DECL const unsigned short * gsl_vector_ushort_const_ptr (const gsl_vector_ushort * v, const size_t i);
+
+#ifdef HAVE_INLINE
+
+INLINE_FUN
+unsigned short
+gsl_vector_ushort_get (const gsl_vector_ushort * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VAL ("index out of range", GSL_EINVAL, 0);
+    }
+#endif
+  return v->data[i * v->stride];
+}
+
+INLINE_FUN
+void
+gsl_vector_ushort_set (gsl_vector_ushort * v, const size_t i, unsigned short x)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_VOID ("index out of range", GSL_EINVAL);
+    }
+#endif
+  v->data[i * v->stride] = x;
+}
+
+INLINE_FUN
+unsigned short *
+gsl_vector_ushort_ptr (gsl_vector_ushort * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (unsigned short *) (v->data + i * v->stride);
+}
+
+INLINE_FUN
+const unsigned short *
+gsl_vector_ushort_const_ptr (const gsl_vector_ushort * v, const size_t i)
+{
+#if GSL_RANGE_CHECK
+  if (GSL_RANGE_COND(i >= v->size))
+    {
+      GSL_ERROR_NULL ("index out of range", GSL_EINVAL);
+    }
+#endif
+  return (const unsigned short *) (v->data + i * v->stride);
+}
+#endif /* HAVE_INLINE */
+
+__END_DECLS
+
+#endif /* __GSL_VECTOR_USHORT_H__ */
+
+

diff --git a/util/X86LINUX64/include/gsl/gsl_version.h b/util/X86LINUX64/include/gsl/gsl_version.h
new file mode 100644 (file)
index 0000000..132af31
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_version.h
@@ -0,0 +1,26 @@
+#ifndef __GSL_VERSION_H__
+#define __GSL_VERSION_H__
+
+#include <gsl/gsl_types.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS /* empty */
+# define __END_DECLS /* empty */
+#endif
+__BEGIN_DECLS
+
+
+#define GSL_VERSION "1.15"
+#define GSL_MAJOR_VERSION 1
+#define GSL_MINOR_VERSION 15
+
+GSL_VAR const char * gsl_version;
+
+__END_DECLS
+
+#endif /* __GSL_VERSION_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_wavelet.h b/util/X86LINUX64/include/gsl/gsl_wavelet.h
new file mode 100644 (file)
index 0000000..5261c48
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_wavelet.h
@@ -0,0 +1,108 @@
+/* wavelet/gsl_wavelet.h
+ * 
+ * Copyright (C) 2004 Ivo Alxneit
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_WAVELET_H__
+#define __GSL_WAVELET_H__
+#include <stdlib.h>
+#include <gsl/gsl_types.h>
+#include <gsl/gsl_errno.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS          /* empty */
+# define __END_DECLS            /* empty */
+#endif
+
+__BEGIN_DECLS
+
+#ifndef GSL_DISABLE_DEPRECATED
+typedef enum {
+  forward = 1, backward = -1,
+  gsl_wavelet_forward = 1, gsl_wavelet_backward = -1
+} 
+gsl_wavelet_direction;
+#else
+typedef enum {
+  gsl_wavelet_forward = 1, gsl_wavelet_backward = -1
+} 
+gsl_wavelet_direction;
+#endif
+
+typedef struct
+{
+  const char *name;
+  int (*init) (const double **h1, const double **g1,
+               const double **h2, const double **g2, size_t * nc,
+               size_t * offset, size_t member);
+}
+gsl_wavelet_type;
+
+typedef struct
+{
+  const gsl_wavelet_type *type;
+  const double *h1;
+  const double *g1;
+  const double *h2;
+  const double *g2;
+  size_t nc;
+  size_t offset;
+}
+gsl_wavelet;
+
+typedef struct
+{
+  double *scratch;
+  size_t n;
+}
+gsl_wavelet_workspace;
+
+GSL_VAR const gsl_wavelet_type *gsl_wavelet_daubechies;
+GSL_VAR const gsl_wavelet_type *gsl_wavelet_daubechies_centered;
+GSL_VAR const gsl_wavelet_type *gsl_wavelet_haar;
+GSL_VAR const gsl_wavelet_type *gsl_wavelet_haar_centered;
+GSL_VAR const gsl_wavelet_type *gsl_wavelet_bspline;
+GSL_VAR const gsl_wavelet_type *gsl_wavelet_bspline_centered;
+
+gsl_wavelet *gsl_wavelet_alloc (const gsl_wavelet_type * T, size_t k);
+void gsl_wavelet_free (gsl_wavelet * w);
+const char *gsl_wavelet_name (const gsl_wavelet * w);
+
+gsl_wavelet_workspace *gsl_wavelet_workspace_alloc (size_t n);
+void gsl_wavelet_workspace_free (gsl_wavelet_workspace * work);
+
+int gsl_wavelet_transform (const gsl_wavelet * w, 
+                           double *data, size_t stride, size_t n,
+                           gsl_wavelet_direction dir, 
+                           gsl_wavelet_workspace * work);
+
+int gsl_wavelet_transform_forward (const gsl_wavelet * w, 
+                                   double *data, size_t stride, size_t n, 
+                                   gsl_wavelet_workspace * work);
+
+int gsl_wavelet_transform_inverse (const gsl_wavelet * w, 
+                                    double *data, size_t stride, size_t n, 
+                                    gsl_wavelet_workspace * work);
+
+__END_DECLS
+
+#endif /* __GSL_WAVELET_H__ */

diff --git a/util/X86LINUX64/include/gsl/gsl_wavelet2d.h b/util/X86LINUX64/include/gsl/gsl_wavelet2d.h
new file mode 100644 (file)
index 0000000..173f43e
--- /dev/null
+++ b/util/X86LINUX64/include/gsl/gsl_wavelet2d.h
@@ -0,0 +1,107 @@
+/* wavelet/gsl_wavelet.h
+ * 
+ * Copyright (C) 2004 Ivo Alxneit
+ * 
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or (at
+ * your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ */
+
+#ifndef __GSL_WAVELET2D_H__
+#define __GSL_WAVELET2D_H__
+#include <stdlib.h>
+#include <gsl/gsl_errno.h>
+#include <gsl/gsl_vector_double.h>
+#include <gsl/gsl_matrix_double.h>
+#include <gsl/gsl_wavelet.h>
+
+#undef __BEGIN_DECLS
+#undef __END_DECLS
+#ifdef __cplusplus
+# define __BEGIN_DECLS extern "C" {
+# define __END_DECLS }
+#else
+# define __BEGIN_DECLS          /* empty */
+# define __END_DECLS            /* empty */
+#endif
+
+__BEGIN_DECLS
+
+int gsl_wavelet2d_transform (const gsl_wavelet * w, 
+                             double *data, 
+                             size_t tda, size_t size1, size_t size2,
+                             gsl_wavelet_direction dir, 
+                             gsl_wavelet_workspace * work);
+
+int gsl_wavelet2d_transform_forward (const gsl_wavelet * w, 
+                                     double *data,
+                                     size_t tda, size_t size1, size_t size2, 
+                                     gsl_wavelet_workspace * work);
+
+int gsl_wavelet2d_transform_inverse (const gsl_wavelet * w, 
+                                     double *data, 
+                                     size_t tda, size_t size1, size_t size2, 
+                                     gsl_wavelet_workspace * work);
+
+int gsl_wavelet2d_nstransform (const gsl_wavelet * w, 
+                               double *data, 
+                               size_t tda, size_t size1, size_t size2, 
+                               gsl_wavelet_direction dir,
+                               gsl_wavelet_workspace * work);
+
+int gsl_wavelet2d_nstransform_forward (const gsl_wavelet * w, 
+                                       double *data, 
+                                       size_t tda, size_t size1, size_t size2,
+                                       gsl_wavelet_workspace * work);
+
+int gsl_wavelet2d_nstransform_inverse (const gsl_wavelet * w, 
+                                       double *data, 
+                                       size_t tda, size_t size1, size_t size2, 
+                                       gsl_wavelet_workspace * work);
+
+int
+gsl_wavelet2d_transform_matrix (const gsl_wavelet * w, 
+                                gsl_matrix * a, 
+                                gsl_wavelet_direction dir, 
+                                gsl_wavelet_workspace * work);
+
+int
+gsl_wavelet2d_transform_matrix_forward (const gsl_wavelet * w, 
+                                        gsl_matrix * a, 
+                                        gsl_wavelet_workspace * work);
+
+int
+gsl_wavelet2d_transform_matrix_inverse (const gsl_wavelet * w, 
+                                        gsl_matrix * a, 
+                                        gsl_wavelet_workspace * work);
+
+
+int
+gsl_wavelet2d_nstransform_matrix (const gsl_wavelet * w, 
+                                  gsl_matrix * a, 
+                                  gsl_wavelet_direction dir, 
+                                  gsl_wavelet_workspace * work);
+
+int
+gsl_wavelet2d_nstransform_matrix_forward (const gsl_wavelet * w, 
+                                          gsl_matrix * a, 
+                                          gsl_wavelet_workspace * work);
+
+int
+gsl_wavelet2d_nstransform_matrix_inverse (const gsl_wavelet * w, 
+                                          gsl_matrix * a, 
+                                          gsl_wavelet_workspace * work);
+
+__END_DECLS
+
+#endif /* __GSL_WAVELET2D_H__ */

diff --git a/util/X86LINUX64/lib/libfftw3f.a b/util/X86LINUX64/lib/libfftw3f.a
index 3f504b8..e163a9a 100644 (file)
Binary files a/util/X86LINUX64/lib/libfftw3f.a and b/util/X86LINUX64/lib/libfftw3f.a differ

diff --git a/util/X86LINUX64/lib/libfftw3f.la b/util/X86LINUX64/lib/libfftw3f.la
index adef18b..3260dc8 100755 (executable)
--- a/util/X86LINUX64/lib/libfftw3f.la
+++ b/util/X86LINUX64/lib/libfftw3f.la
@@ -1,5 +1,5 @@
 # libfftw3f.la - a libtool library file
-# Generated by ltmain.sh (GNU libtool) 2.2.6 Debian-2.2.6a-4
+# Generated by libtool (GNU libtool) 2.4.2 Debian-2.4.2-1.1
 #
 # Please DO NOT delete this file!
 # It is necessary for linking the library.
@@ -8,13 +8,13 @@
 dlname='libfftw3f.so.3'
 
 # Names of this library.
-library_names='libfftw3f.so.3.2.4 libfftw3f.so.3 libfftw3f.so'
+library_names='libfftw3f.so.3.3.2 libfftw3f.so.3 libfftw3f.so'
 
 # The name of the static archive.
 old_library='libfftw3f.a'
 
 # Linker flags that can not go in dependency_libs.
-inherited_linker_flags=' -pthread'
+inherited_linker_flags=''
 
 # Libraries that this one depends upon.
 dependency_libs=' -lm'
@@ -23,9 +23,9 @@ dependency_libs=' -lm'
 weak_library_names=''
 
 # Version information for libfftw3f.
-current=5
-age=2
-revision=4
+current=6
+age=3
+revision=2
 
 # Is this an already installed library?
 installed=yes

diff --git a/util/X86LINUX64/lib/libfftw3f.so b/util/X86LINUX64/lib/libfftw3f.so
index 08db041..31ed8ae 120000 (symlink)
--- a/util/X86LINUX64/lib/libfftw3f.so
+++ b/util/X86LINUX64/lib/libfftw3f.so
@@ -1 +1 @@
-libfftw3f.so.3.2.4
\ No newline at end of file
+libfftw3f.so.3.3.2
\ No newline at end of file

diff --git a/util/X86LINUX64/lib/libfftw3f.so.3 b/util/X86LINUX64/lib/libfftw3f.so.3
index 08db041..31ed8ae 120000 (symlink)
--- a/util/X86LINUX64/lib/libfftw3f.so.3
+++ b/util/X86LINUX64/lib/libfftw3f.so.3
@@ -1 +1 @@
-libfftw3f.so.3.2.4
\ No newline at end of file
+libfftw3f.so.3.3.2
\ No newline at end of file

diff --git a/util/X86LINUX64/lib/libfftw3f.so.3.3.2 b/util/X86LINUX64/lib/libfftw3f.so.3.3.2
new file mode 100755 (executable)
index 0000000..29497d9
Binary files /dev/null and b/util/X86LINUX64/lib/libfftw3f.so.3.3.2 differ

diff --git a/util/X86LINUX64/lib/libfftw3f_threads.a b/util/X86LINUX64/lib/libfftw3f_threads.a
index ec13cc5..6358d8d 100644 (file)
Binary files a/util/X86LINUX64/lib/libfftw3f_threads.a and b/util/X86LINUX64/lib/libfftw3f_threads.a differ

diff --git a/util/X86LINUX64/lib/libfftw3f_threads.la b/util/X86LINUX64/lib/libfftw3f_threads.la
index 1aff9ef..349594e 100755 (executable)
--- a/util/X86LINUX64/lib/libfftw3f_threads.la
+++ b/util/X86LINUX64/lib/libfftw3f_threads.la
@@ -1,5 +1,5 @@
 # libfftw3f_threads.la - a libtool library file
-# Generated by ltmain.sh (GNU libtool) 2.2.6 Debian-2.2.6a-4
+# Generated by libtool (GNU libtool) 2.4.2 Debian-2.4.2-1.1
 #
 # Please DO NOT delete this file!
 # It is necessary for linking the library.
@@ -8,7 +8,7 @@
 dlname='libfftw3f_threads.so.3'
 
 # Names of this library.
-library_names='libfftw3f_threads.so.3.2.4 libfftw3f_threads.so.3 libfftw3f_threads.so'
+library_names='libfftw3f_threads.so.3.3.2 libfftw3f_threads.so.3 libfftw3f_threads.so'
 
 # The name of the static archive.
 old_library='libfftw3f_threads.a'
@@ -17,15 +17,15 @@ old_library='libfftw3f_threads.a'
 inherited_linker_flags=' -pthread'
 
 # Libraries that this one depends upon.
-dependency_libs=' -lm'
+dependency_libs=' /home/people/tacyas/Eos/util/X86LINUX64/lib/libfftw3f.la -lm'
 
 # Names of additional weak libraries provided by this library
 weak_library_names=''
 
 # Version information for libfftw3f_threads.
-current=5
-age=2
-revision=4
+current=6
+age=3
+revision=2
 
 # Is this an already installed library?
 installed=yes

diff --git a/util/X86LINUX64/lib/libfftw3f_threads.so b/util/X86LINUX64/lib/libfftw3f_threads.so
index 7ea3713..883deba 120000 (symlink)
--- a/util/X86LINUX64/lib/libfftw3f_threads.so
+++ b/util/X86LINUX64/lib/libfftw3f_threads.so
@@ -1 +1 @@
-libfftw3f_threads.so.3.2.4
\ No newline at end of file
+libfftw3f_threads.so.3.3.2
\ No newline at end of file

diff --git a/util/X86LINUX64/lib/libfftw3f_threads.so.3 b/util/X86LINUX64/lib/libfftw3f_threads.so.3
index 7ea3713..883deba 120000 (symlink)
--- a/util/X86LINUX64/lib/libfftw3f_threads.so.3
+++ b/util/X86LINUX64/lib/libfftw3f_threads.so.3
@@ -1 +1 @@
-libfftw3f_threads.so.3.2.4
\ No newline at end of file
+libfftw3f_threads.so.3.3.2
\ No newline at end of file

diff --git a/util/X86LINUX64/lib/libfftw3f_threads.so.3.3.2 b/util/X86LINUX64/lib/libfftw3f_threads.so.3.3.2
new file mode 100755 (executable)
index 0000000..499aba4
Binary files /dev/null and b/util/X86LINUX64/lib/libfftw3f_threads.so.3.3.2 differ

diff --git a/util/X86LINUX64/lib/libgsl.a b/util/X86LINUX64/lib/libgsl.a
new file mode 100644 (file)
index 0000000..a11a5d5
Binary files /dev/null and b/util/X86LINUX64/lib/libgsl.a differ

diff --git a/util/X86LINUX64/lib/libgsl.la b/util/X86LINUX64/lib/libgsl.la
new file mode 100755 (executable)
index 0000000..b60ee70
--- /dev/null
+++ b/util/X86LINUX64/lib/libgsl.la
@@ -0,0 +1,41 @@
+# libgsl.la - a libtool library file
+# Generated by libtool (GNU libtool) 2.4
+#
+# Please DO NOT delete this file!
+# It is necessary for linking the library.
+
+# The name that we can dlopen(3).
+dlname='libgsl.so.0'
+
+# Names of this library.
+library_names='libgsl.so.0.16.0 libgsl.so.0 libgsl.so'
+
+# The name of the static archive.
+old_library='libgsl.a'
+
+# Linker flags that can not go in dependency_libs.
+inherited_linker_flags=''
+
+# Libraries that this one depends upon.
+dependency_libs=' -lm'
+
+# Names of additional weak libraries provided by this library
+weak_library_names=''
+
+# Version information for libgsl.
+current=16
+age=16
+revision=0
+
+# Is this an already installed library?
+installed=yes
+
+# Should we warn about portability when linking against -modules?
+shouldnotlink=no
+
+# Files to dlopen/dlpreopen
+dlopen=''
+dlpreopen=''
+
+# Directory that this library needs to be installed in:
+libdir='/home/people/tacyas/Eos/util/X86LINUX64/lib'

diff --git a/util/X86LINUX64/lib/libgsl.so b/util/X86LINUX64/lib/libgsl.so
new file mode 120000 (symlink)
index 0000000..7e5880e
--- /dev/null
+++ b/util/X86LINUX64/lib/libgsl.so
@@ -0,0 +1 @@
+libgsl.so.0.16.0
\ No newline at end of file

diff --git a/util/X86LINUX64/lib/libgsl.so.0 b/util/X86LINUX64/lib/libgsl.so.0
new file mode 120000 (symlink)
index 0000000..7e5880e
--- /dev/null
+++ b/util/X86LINUX64/lib/libgsl.so.0
@@ -0,0 +1 @@
+libgsl.so.0.16.0
\ No newline at end of file

diff --git a/util/X86LINUX64/lib/libgsl.so.0.16.0 b/util/X86LINUX64/lib/libgsl.so.0.16.0
new file mode 100755 (executable)
index 0000000..9b7c23e
Binary files /dev/null and b/util/X86LINUX64/lib/libgsl.so.0.16.0 differ

diff --git a/util/X86LINUX64/lib/libgslcblas.a b/util/X86LINUX64/lib/libgslcblas.a
new file mode 100644 (file)
index 0000000..b720c12
Binary files /dev/null and b/util/X86LINUX64/lib/libgslcblas.a differ

diff --git a/util/X86LINUX64/lib/libgslcblas.la b/util/X86LINUX64/lib/libgslcblas.la
new file mode 100755 (executable)
index 0000000..e07816e
--- /dev/null
+++ b/util/X86LINUX64/lib/libgslcblas.la
@@ -0,0 +1,41 @@
+# libgslcblas.la - a libtool library file
+# Generated by libtool (GNU libtool) 2.4
+#
+# Please DO NOT delete this file!
+# It is necessary for linking the library.
+
+# The name that we can dlopen(3).
+dlname='libgslcblas.so.0'
+
+# Names of this library.
+library_names='libgslcblas.so.0.0.0 libgslcblas.so.0 libgslcblas.so'
+
+# The name of the static archive.
+old_library='libgslcblas.a'
+
+# Linker flags that can not go in dependency_libs.
+inherited_linker_flags=''
+
+# Libraries that this one depends upon.
+dependency_libs=' -lm'
+
+# Names of additional weak libraries provided by this library
+weak_library_names=''
+
+# Version information for libgslcblas.
+current=0
+age=0
+revision=0
+
+# Is this an already installed library?
+installed=yes
+
+# Should we warn about portability when linking against -modules?
+shouldnotlink=no
+
+# Files to dlopen/dlpreopen
+dlopen=''
+dlpreopen=''
+
+# Directory that this library needs to be installed in:
+libdir='/home/people/tacyas/Eos/util/X86LINUX64/lib'

diff --git a/util/X86LINUX64/lib/libgslcblas.so b/util/X86LINUX64/lib/libgslcblas.so
new file mode 120000 (symlink)
index 0000000..f643b02
--- /dev/null
+++ b/util/X86LINUX64/lib/libgslcblas.so
@@ -0,0 +1 @@
+libgslcblas.so.0.0.0
\ No newline at end of file

diff --git a/util/X86LINUX64/lib/libgslcblas.so.0 b/util/X86LINUX64/lib/libgslcblas.so.0
new file mode 120000 (symlink)
index 0000000..f643b02
--- /dev/null
+++ b/util/X86LINUX64/lib/libgslcblas.so.0
@@ -0,0 +1 @@
+libgslcblas.so.0.0.0
\ No newline at end of file

diff --git a/util/X86LINUX64/lib/libgslcblas.so.0.0.0 b/util/X86LINUX64/lib/libgslcblas.so.0.0.0
new file mode 100755 (executable)
index 0000000..bab1696
Binary files /dev/null and b/util/X86LINUX64/lib/libgslcblas.so.0.0.0 differ

diff --git a/util/X86LINUX64/lib/pkgconfig/fftw3f.pc b/util/X86LINUX64/lib/pkgconfig/fftw3f.pc
index 9657570..b68cded 100644 (file)
--- a/util/X86LINUX64/lib/pkgconfig/fftw3f.pc
+++ b/util/X86LINUX64/lib/pkgconfig/fftw3f.pc
@@ -5,6 +5,6 @@ includedir=${prefix}/include
 
 Name: FFTW
 Description: fast Fourier transform library
-Version: 3.2.2
-Libs: -L${libdir} -lfftw3f -lm
+Version: 3.3.3
+Libs: -L${libdir} -lfftw3f  -lm
 Cflags: -I${includedir}

diff --git a/util/X86LINUX64/lib/pkgconfig/gsl.pc b/util/X86LINUX64/lib/pkgconfig/gsl.pc
new file mode 100644 (file)
index 0000000..52c5e13
--- /dev/null
+++ b/util/X86LINUX64/lib/pkgconfig/gsl.pc
@@ -0,0 +1,11 @@
+prefix=/home/people/tacyas/Eos/util/X86LINUX64
+exec_prefix=/home/people/tacyas/Eos/util/X86LINUX64
+libdir=/home/people/tacyas/Eos/util/X86LINUX64/lib
+includedir=/home/people/tacyas/Eos/util/X86LINUX64/include
+GSL_CBLAS_LIB=-lgslcblas
+
+Name: GSL
+Description: GNU Scientific Library
+Version: 1.15
+Libs: -L/home/people/tacyas/Eos/util/X86LINUX64/lib -lgsl ${GSL_CBLAS_LIB} -lm -lm 
+Cflags: -I/home/people/tacyas/Eos/util/X86LINUX64/include

diff --git a/util/X86LINUX64/share/aclocal/gsl.m4 b/util/X86LINUX64/share/aclocal/gsl.m4
new file mode 100644 (file)
index 0000000..fc7fb44
--- /dev/null
+++ b/util/X86LINUX64/share/aclocal/gsl.m4
@@ -0,0 +1,162 @@
+# Configure path for the GNU Scientific Library
+# Christopher R. Gabriel <cgabriel@linux.it>, April 2000
+
+
+AC_DEFUN([AX_PATH_GSL],
+[
+AC_ARG_WITH(gsl-prefix,[  --with-gsl-prefix=PFX   Prefix where GSL is installed (optional)],
+            gsl_prefix="$withval", gsl_prefix="")
+AC_ARG_WITH(gsl-exec-prefix,[  --with-gsl-exec-prefix=PFX Exec prefix where GSL is installed (optional)],
+            gsl_exec_prefix="$withval", gsl_exec_prefix="")
+AC_ARG_ENABLE(gsltest, [  --disable-gsltest       Do not try to compile and run a test GSL program],
+                   , enable_gsltest=yes)
+
+  if test "x${GSL_CONFIG+set}" != xset ; then
+     if test "x$gsl_prefix" != x ; then
+         GSL_CONFIG="$gsl_prefix/bin/gsl-config"
+     fi
+     if test "x$gsl_exec_prefix" != x ; then
+        GSL_CONFIG="$gsl_exec_prefix/bin/gsl-config"
+     fi
+  fi
+
+  AC_PATH_PROG(GSL_CONFIG, gsl-config, no)
+  min_gsl_version=ifelse([$1], ,0.2.5,$1)
+  AC_MSG_CHECKING(for GSL - version >= $min_gsl_version)
+  no_gsl=""
+  if test "$GSL_CONFIG" = "no" ; then
+    no_gsl=yes
+  else
+    GSL_CFLAGS=`$GSL_CONFIG --cflags`
+    GSL_LIBS=`$GSL_CONFIG --libs`
+
+    gsl_major_version=`$GSL_CONFIG --version | \
+           sed 's/^\([[0-9]]*\).*/\1/'`
+    if test "x${gsl_major_version}" = "x" ; then
+       gsl_major_version=0
+    fi
+
+    gsl_minor_version=`$GSL_CONFIG --version | \
+           sed 's/^\([[0-9]]*\)\.\{0,1\}\([[0-9]]*\).*/\2/'`
+    if test "x${gsl_minor_version}" = "x" ; then
+       gsl_minor_version=0
+    fi
+
+    gsl_micro_version=`$GSL_CONFIG --version | \
+           sed 's/^\([[0-9]]*\)\.\{0,1\}\([[0-9]]*\)\.\{0,1\}\([[0-9]]*\).*/\3/'`
+    if test "x${gsl_micro_version}" = "x" ; then
+       gsl_micro_version=0
+    fi
+
+    if test "x$enable_gsltest" = "xyes" ; then
+      ac_save_CFLAGS="$CFLAGS"
+      ac_save_LIBS="$LIBS"
+      CFLAGS="$CFLAGS $GSL_CFLAGS"
+      LIBS="$LIBS $GSL_LIBS"
+
+      rm -f conf.gsltest
+      AC_TRY_RUN([
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+
+char* my_strdup (const char *str);
+
+char*
+my_strdup (const char *str)
+{
+  char *new_str;
+  
+  if (str)
+    {
+      new_str = (char *)malloc ((strlen (str) + 1) * sizeof(char));
+      strcpy (new_str, str);
+    }
+  else
+    new_str = NULL;
+  
+  return new_str;
+}
+
+int main (void)
+{
+  int major = 0, minor = 0, micro = 0;
+  int n;
+  char *tmp_version;
+
+  system ("touch conf.gsltest");
+
+  /* HP/UX 9 (%@#!) writes to sscanf strings */
+  tmp_version = my_strdup("$min_gsl_version");
+
+  n = sscanf(tmp_version, "%d.%d.%d", &major, &minor, &micro) ;
+
+  if (n != 2 && n != 3) {
+     printf("%s, bad version string\n", "$min_gsl_version");
+     exit(1);
+   }
+
+   if (($gsl_major_version > major) ||
+      (($gsl_major_version == major) && ($gsl_minor_version > minor)) ||
+      (($gsl_major_version == major) && ($gsl_minor_version == minor) && ($gsl_micro_version >= micro)))
+     { 
+       exit(0);
+     }   
+   else
+     {
+       exit(1);
+     }
+}
+
+],, no_gsl=yes,[echo $ac_n "cross compiling; assumed OK... $ac_c"])
+       CFLAGS="$ac_save_CFLAGS"
+       LIBS="$ac_save_LIBS"
+     fi
+  fi
+  if test "x$no_gsl" = x ; then
+     AC_MSG_RESULT(yes)
+     ifelse([$2], , :, [$2])     
+  else
+     AC_MSG_RESULT(no)
+     if test "$GSL_CONFIG" = "no" ; then
+       echo "*** The gsl-config script installed by GSL could not be found"
+       echo "*** If GSL was installed in PREFIX, make sure PREFIX/bin is in"
+       echo "*** your path, or set the GSL_CONFIG environment variable to the"
+       echo "*** full path to gsl-config."
+     else
+       if test -f conf.gsltest ; then
+        :
+       else
+          echo "*** Could not run GSL test program, checking why..."
+          CFLAGS="$CFLAGS $GSL_CFLAGS"
+          LIBS="$LIBS $GSL_LIBS"
+          AC_TRY_LINK([
+#include <stdio.h>
+],      [ return 0; ],
+        [ echo "*** The test program compiled, but did not run. This usually means"
+          echo "*** that the run-time linker is not finding GSL or finding the wrong"
+          echo "*** version of GSL. If it is not finding GSL, you'll need to set your"
+          echo "*** LD_LIBRARY_PATH environment variable, or edit /etc/ld.so.conf to point"
+          echo "*** to the installed location  Also, make sure you have run ldconfig if that"
+          echo "*** is required on your system"
+         echo "***"
+          echo "*** If you have an old version installed, it is best to remove it, although"
+          echo "*** you may also be able to get things to work by modifying LD_LIBRARY_PATH"],
+        [ echo "*** The test program failed to compile or link. See the file config.log for the"
+          echo "*** exact error that occured. This usually means GSL was incorrectly installed"
+          echo "*** or that you have moved GSL since it was installed. In the latter case, you"
+          echo "*** may want to edit the gsl-config script: $GSL_CONFIG" ])
+          CFLAGS="$ac_save_CFLAGS"
+          LIBS="$ac_save_LIBS"
+       fi
+     fi
+#     GSL_CFLAGS=""
+#     GSL_LIBS=""
+     ifelse([$3], , :, [$3])
+  fi
+  AC_SUBST(GSL_CFLAGS)
+  AC_SUBST(GSL_LIBS)
+  rm -f conf.gsltest
+])
+
+AU_ALIAS([AM_PATH_GSL], [AX_PATH_GSL])

diff --git a/util/X86LINUX64/share/info/dir b/util/X86LINUX64/share/info/dir
index a6c0ccc..4dee615 100644 (file)
--- a/util/X86LINUX64/share/info/dir
+++ b/util/X86LINUX64/share/info/dir
@@ -14,5 +14,8 @@ File: dir,    Node: Top       This is the top of the INFO tree
 
 * Menu:
 
+Software libraries
+* gsl-ref: (gsl-ref).           GNU Scientific Library - Reference
+
 Texinfo documentation system
 * fftw3: (fftw3).               FFTW User's Manual.

diff --git a/util/X86LINUX64/share/info/fftw3.info b/util/X86LINUX64/share/info/fftw3.info
index 78334f2..478e74e 100644 (file)
--- a/util/X86LINUX64/share/info/fftw3.info
+++ b/util/X86LINUX64/share/info/fftw3.info
@@ -1,6 +1,6 @@
 This is fftw3.info, produced by makeinfo version 4.13 from fftw3.texi.
 
-This manual is for FFTW (version 3.2.2, 12 July 2009).
+This manual is for FFTW (version 3.3.3, 25 November 2012).
 
    Copyright (C) 2003 Matteo Frigo.
 
@@ -26,4946 +26,140 @@ START-INFO-DIR-ENTRY
 END-INFO-DIR-ENTRY
 
 \1f
-File: fftw3.info,  Node: Top,  Next: Introduction,  Prev: (dir),  Up: (dir)
-
-FFTW User Manual
-****************
-
-Welcome to FFTW, the Fastest Fourier Transform in the West.  FFTW is a
-collection of fast C routines to compute the discrete Fourier transform.
-This manual documents FFTW version 3.2.2.
-
-* Menu:
-
-* Introduction::
-* Tutorial::
-* Other Important Topics::
-* FFTW Reference::
-* Multi-threaded FFTW::
-* FFTW on the Cell Processor::
-* Calling FFTW from Fortran::
-* Upgrading from FFTW version 2::
-* Installation and Customization::
-* Acknowledgments::
-* License and Copyright::
-* Concept Index::
-* Library Index::
-
- --- The Detailed Node Listing ---
-
-Tutorial
-
-* Complex One-Dimensional DFTs::
-* Complex Multi-Dimensional DFTs::
-* One-Dimensional DFTs of Real Data::
-* Multi-Dimensional DFTs of Real Data::
-* More DFTs of Real Data::
-
-More DFTs of Real Data
-
-* The Halfcomplex-format DFT::
-* Real even/odd DFTs (cosine/sine transforms)::
-* The Discrete Hartley Transform::
-
-Other Important Topics
-
-* Data Alignment::
-* Multi-dimensional Array Format::
-* Words of Wisdom-Saving Plans::
-* Caveats in Using Wisdom::
-
-Data Alignment
-
-* SIMD alignment and fftw_malloc::
-* Stack alignment on x86::
-
-Multi-dimensional Array Format
-
-* Row-major Format::
-* Column-major Format::
-* Fixed-size Arrays in C::
-* Dynamic Arrays in C::
-* Dynamic Arrays in C-The Wrong Way::
-
-FFTW Reference
-
-* Data Types and Files::
-* Using Plans::
-* Basic Interface::
-* Advanced Interface::
-* Guru Interface::
-* New-array Execute Functions::
-* Wisdom::
-* What FFTW Really Computes::
-
-Data Types and Files
-
-* Complex numbers::
-* Precision::
-* Memory Allocation::
-
-Basic Interface
-
-* Complex DFTs::
-* Planner Flags::
-* Real-data DFTs::
-* Real-data DFT Array Format::
-* Real-to-Real Transforms::
-* Real-to-Real Transform Kinds::
-
-Advanced Interface
-
-* Advanced Complex DFTs::
-* Advanced Real-data DFTs::
-* Advanced Real-to-real Transforms::
-
-Guru Interface
-
-* Interleaved and split arrays::
-* Guru vector and transform sizes::
-* Guru Complex DFTs::
-* Guru Real-data DFTs::
-* Guru Real-to-real Transforms::
-* 64-bit Guru Interface::
-
-Wisdom
-
-* Wisdom Export::
-* Wisdom Import::
-* Forgetting Wisdom::
-* Wisdom Utilities::
-
-What FFTW Really Computes
-
-* The 1d Discrete Fourier Transform (DFT)::
-* The 1d Real-data DFT::
-* 1d Real-even DFTs (DCTs)::
-* 1d Real-odd DFTs (DSTs)::
-* 1d Discrete Hartley Transforms (DHTs)::
-* Multi-dimensional Transforms::
-
-Multi-threaded FFTW
-
-* Installation and Supported Hardware/Software::
-* Usage of Multi-threaded FFTW::
-* How Many Threads to Use?::
-* Thread safety::
-
-FFTW on the Cell Processor
-
-* Cell Installation::
-* Cell Caveats::
-* FFTW Accuracy on Cell::
-
-Calling FFTW from Fortran
-
-* Fortran-interface routines::
-* FFTW Constants in Fortran::
-* FFTW Execution in Fortran::
-* Fortran Examples::
-* Wisdom of Fortran?::
-
-Installation and Customization
-
-* Installation on Unix::
-* Installation on non-Unix systems::
-* Cycle Counters::
-* Generating your own code::
-
-\1f
-File: fftw3.info,  Node: Introduction,  Next: Tutorial,  Prev: Top,  Up: Top
-
-1 Introduction
-**************
-
-This manual documents version 3.2.2 of FFTW, the _Fastest Fourier
-Transform in the West_.  FFTW is a comprehensive collection of fast C
-routines for computing the discrete Fourier transform (DFT) and various
-special cases thereof.  
-   * FFTW computes the DFT of complex data, real data, even-   or
-     odd-symmetric real data (these symmetric transforms are usually
-     known as the discrete cosine or sine transform, respectively), and
-     the   discrete Hartley transform (DHT) of real data.
-
-   * The input data can have arbitrary length.         FFTW employs O(n
-     log n)  algorithms for all lengths, including        prime numbers.
-
-   * FFTW supports arbitrary multi-dimensional data.
-
-   * FFTW supports the SSE, SSE2, Altivec, and MIPS PS instruction
-      sets.
-
-   * FFTW 3.2.2 includes parallel (multi-threaded) transforms   for
-     shared-memory systems.    FFTW 3.2.2 does not include
-     distributed-memory parallel   transforms, but we plan to implement
-     an MPI version soon.  (Meanwhile,   you can use the MPI
-     implementation from FFTW 2.1.3.)
-
-   We assume herein that you are familiar with the properties and uses
-of the DFT that are relevant to your application.  Otherwise, see e.g.
-`The Fast Fourier Transform and Its Applications' by E. O. Brigham
-(Prentice-Hall, Englewood Cliffs, NJ, 1988).  Our web page
-(http://www.fftw.org) also has links to FFT-related information online.  
-
-   In order to use FFTW effectively, you need to learn one basic concept
-of FFTW's internal structure: FFTW does not use a fixed algorithm for
-computing the transform, but instead it adapts the DFT algorithm to
-details of the underlying hardware in order to maximize performance.
-Hence, the computation of the transform is split into two phases.
-First, FFTW's "planner" "learns" the fastest way to compute the
-transform on your machine.  The planner produces a data structure
-called a "plan" that contains this information.  Subsequently, the plan
-is "executed" to transform the array of input data as dictated by the
-plan.  The plan can be reused as many times as needed.  In typical
-high-performance applications, many transforms of the same size are
-computed and, consequently, a relatively expensive initialization of
-this sort is acceptable.  On the other hand, if you need a single
-transform of a given size, the one-time cost of the planner becomes
-significant.  For this case, FFTW provides fast planners based on
-heuristics or on previously computed plans.
-
-   FFTW supports transforms of data with arbitrary length, rank,
-multiplicity, and a general memory layout.  In simple cases, however,
-this generality may be unnecessary and confusing.  Consequently, we
-organized the interface to FFTW into three levels of increasing
-generality.
-   * The "basic interface" computes a single       transform of
-     contiguous data.
-
-   * The "advanced interface" computes transforms       of multiple or
-     strided arrays.
-
-   * The "guru interface" supports the most general data       layouts,
-     multiplicities, and strides.
-   We expect that most users will be best served by the basic interface,
-whereas the guru interface requires careful attention to the
-documentation to avoid problems.  
-
-   Besides the automatic performance adaptation performed by the
-planner, it is also possible for advanced users to customize FFTW
-manually.  For example, if code space is a concern, we provide a tool
-that links only the subset of FFTW needed by your application.
-Conversely, you may need to extend FFTW because the standard
-distribution is not sufficient for your needs.  For example, the
-standard FFTW distribution works most efficiently for arrays whose size
-can be factored into small primes (2, 3, 5, and 7), and otherwise it
-uses a slower general-purpose routine.  If you need efficient
-transforms of other sizes, you can use FFTW's code generator, which
-produces fast C programs ("codelets") for any particular array size you
-may care about.  For example, if you need transforms of size 513 = 19 x
-3^3, you can customize FFTW to support the factor 19 efficiently.
-
-   For more information regarding FFTW, see the paper, "The Design and
-Implementation of FFTW3," by M. Frigo and S. G. Johnson, which was an
-invited paper in `Proc. IEEE' 93 (2), p. 216 (2005).  The code
-generator is described in the paper "A fast Fourier transform compiler", by
-M. Frigo, in the `Proceedings of the 1999 ACM SIGPLAN Conference on
-Programming Language Design and Implementation (PLDI), Atlanta,
-Georgia, May 1999'.  These papers, along with the latest version of
-FFTW, the FAQ, benchmarks, and other links, are available at the FFTW
-home page (http://www.fftw.org).
-
-   The current version of FFTW incorporates many good ideas from the
-past thirty years of FFT literature.  In one way or another, FFTW uses
-the Cooley-Tukey algorithm, the prime factor algorithm, Rader's
-algorithm for prime sizes, and a split-radix algorithm (with a
-variation due to Dan Bernstein).  FFTW's code generator also produces
-new algorithms that we do not completely understand.  The reader is
-referred to the cited papers for the appropriate references.
-
-   The rest of this manual is organized as follows.  We first discuss
-the sequential (single-processor) implementation.  We start by
-describing the basic interface/features of FFTW in *note Tutorial::.
-The following chapter discusses *note Other Important Topics::,
-including *note Data Alignment::, the storage scheme of
-multi-dimensional arrays (*note Multi-dimensional Array Format::), and
-FFTW's mechanism for storing plans on disk (*note Words of
-Wisdom-Saving Plans::).  Next, *note FFTW Reference:: provides
-comprehensive documentation of all FFTW's features.  Parallel
-transforms are discussed in their own chapters: *note Multi-threaded
-FFTW::.  Fortran programmers can also use FFTW, as described in *note
-Calling FFTW from Fortran::.  *note Installation and Customization::
-explains how to install FFTW in your computer system and how to adapt
-FFTW to your needs.  License and copyright information is given in
-*note License and Copyright::.  Finally, we thank all the people who
-helped us in *note Acknowledgments::.
-
-\1f
-File: fftw3.info,  Node: Tutorial,  Next: Other Important Topics,  Prev: Introduction,  Up: Top
-
-2 Tutorial
-**********
-
-* Menu:
-
-* Complex One-Dimensional DFTs::
-* Complex Multi-Dimensional DFTs::
-* One-Dimensional DFTs of Real Data::
-* Multi-Dimensional DFTs of Real Data::
-* More DFTs of Real Data::
-
-   This chapter describes the basic usage of FFTW, i.e., how to compute the
-Fourier transform of a single array.  This chapter tells the truth, but
-not the _whole_ truth. Specifically, FFTW implements additional
-routines and flags that are not documented here, although in many cases
-we try to indicate where added capabilities exist.  For more complete
-information, see *note FFTW Reference::.  (Note that you need to
-compile and install FFTW before you can use it in a program.  For the
-details of the installation, see *note Installation and
-Customization::.)
-
-   We recommend that you read this tutorial in order.(1)  At the least,
-read the first section (*note Complex One-Dimensional DFTs::) before
-reading any of the others, even if your main interest lies in one of
-the other transform types.
-
-   Users of FFTW version 2 and earlier may also want to read *note
-Upgrading from FFTW version 2::.
-
-   ---------- Footnotes ----------
-
-   (1) You can read the tutorial in bit-reversed order after computing
-your first transform.
-
-\1f
-File: fftw3.info,  Node: Complex One-Dimensional DFTs,  Next: Complex Multi-Dimensional DFTs,  Prev: Tutorial,  Up: Tutorial
-
-2.1 Complex One-Dimensional DFTs
-================================
-
-     Plan: To bother about the best method of accomplishing an
-     accidental result.  [Ambrose Bierce, `The Enlarged Devil's
-     Dictionary'.]  
-
-   The basic usage of FFTW to compute a one-dimensional DFT of size `N'
-is simple, and it typically looks something like this code:
-
-     #include <fftw3.h>
-     ...
-     {
-         fftw_complex *in, *out;
-         fftw_plan p;
-         ...
-         in = (fftw_complex*) fftw_malloc(sizeof(fftw_complex) * N);
-         out = (fftw_complex*) fftw_malloc(sizeof(fftw_complex) * N);
-         p = fftw_plan_dft_1d(N, in, out, FFTW_FORWARD, FFTW_ESTIMATE);
-         ...
-         fftw_execute(p); /* repeat as needed */
-         ...
-         fftw_destroy_plan(p);
-         fftw_free(in); fftw_free(out);
-     }
-
-   (When you compile, you must also link with the `fftw3' library, e.g.
-`-lfftw3 -lm' on Unix systems.)
-
-   First you allocate the input and output arrays.  You can allocate
-them in any way that you like, but we recommend using `fftw_malloc',
-which behaves like `malloc' except that it properly aligns the array
-when SIMD instructions (such as SSE and Altivec) are available (*note
-SIMD alignment and fftw_malloc::).  
-
-   The data is an array of type `fftw_complex', which is by default a
-`double[2]' composed of the real (`in[i][0]') and imaginary
-(`in[i][1]') parts of a complex number.  
-
-   The next step is to create a "plan", which is an object that
-contains all the data that FFTW needs to compute the FFT.  This
-function creates the plan:
-
-     fftw_plan fftw_plan_dft_1d(int n, fftw_complex *in, fftw_complex *out,
-                                int sign, unsigned flags);
-   
-   The first argument, `n', is the size of the transform you are trying
-to compute.  The size `n' can be any positive integer, but sizes that
-are products of small factors are transformed most efficiently
-(although prime sizes still use an O(n log n)  algorithm).
-
-   The next two arguments are pointers to the input and output arrays of
-the transform.  These pointers can be equal, indicating an "in-place"
-transform.  
-
-   The fourth argument, `sign', can be either `FFTW_FORWARD' (`-1') or
-`FFTW_BACKWARD' (`+1'), and indicates the direction of the transform
-you are interested in; technically, it is the sign of the exponent in
-the transform.
-
-   The `flags' argument is usually either `FFTW_MEASURE' or `FFTW_ESTIMATE'.
-`FFTW_MEASURE' instructs FFTW to run and measure the execution time of
-several FFTs in order to find the best way to compute the transform of
-size `n'.  This process takes some time (usually a few seconds),
-depending on your machine and on the size of the transform.
-`FFTW_ESTIMATE', on the contrary, does not run any computation and just
-builds a reasonable plan that is probably sub-optimal.  In short, if
-your program performs many transforms of the same size and
-initialization time is not important, use `FFTW_MEASURE'; otherwise use
-the estimate.  The data in the `in'/`out' arrays is _overwritten_
-during `FFTW_MEASURE' planning, so such planning should be done
-_before_ the input is initialized by the user.
-
-   Once the plan has been created, you can use it as many times as you
-like for transforms on the specified `in'/`out' arrays, computing the
-actual transforms via `fftw_execute(plan)':
-     void fftw_execute(const fftw_plan plan);
-   
-   If you want to transform a _different_ array of the same size, you
-can create a new plan with `fftw_plan_dft_1d' and FFTW automatically
-reuses the information from the previous plan, if possible.
-(Alternatively, with the "guru" interface you can apply a given plan to
-a different array, if you are careful.  *Note FFTW Reference::.)
-
-   When you are done with the plan, you deallocate it by calling
-`fftw_destroy_plan(plan)':
-     void fftw_destroy_plan(fftw_plan plan);
-   Arrays allocated with `fftw_malloc' should be deallocated by
-`fftw_free' rather than the ordinary `free' (or, heaven forbid,
-`delete').  
-
-   The DFT results are stored in-order in the array `out', with the
-zero-frequency (DC) component in `out[0]'.  If `in != out', the
-transform is "out-of-place" and the input array `in' is not modified.
-Otherwise, the input array is overwritten with the transform.
-
-   Users should note that FFTW computes an _unnormalized_ DFT.  Thus,
-computing a forward followed by a backward transform (or vice versa)
-results in the original array scaled by `n'.  For the definition of the
-DFT, see *note What FFTW Really Computes::.  
-
-   If you have a C compiler, such as `gcc', that supports the recent
-C99 standard, and you `#include <complex.h>' _before_ `<fftw3.h>', then
-`fftw_complex' is the native double-precision complex type and you can
-manipulate it with ordinary arithmetic.  Otherwise, FFTW defines its
-own complex type, which is bit-compatible with the C99 complex type.
-*Note Complex numbers::.  (The C++ `<complex>' template class may also
-be usable via a typecast.)  
-
-   Single and long-double precision versions of FFTW may be installed;
-to use them, replace the `fftw_' prefix by `fftwf_' or `fftwl_' and
-link with `-lfftw3f' or `-lfftw3l', but use the _same_ `<fftw3.h>'
-header file.  
-
-   Many more flags exist besides `FFTW_MEASURE' and `FFTW_ESTIMATE'.
-For example, use `FFTW_PATIENT' if you're willing to wait even longer
-for a possibly even faster plan (*note FFTW Reference::).  You can also
-save plans for future use, as described by *note Words of Wisdom-Saving
-Plans::.
-
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-File: fftw3.info,  Node: Complex Multi-Dimensional DFTs,  Next: One-Dimensional DFTs of Real Data,  Prev: Complex One-Dimensional DFTs,  Up: Tutorial
-
-2.2 Complex Multi-Dimensional DFTs
-==================================
-
-Multi-dimensional transforms work much the same way as one-dimensional
-transforms: you allocate arrays of `fftw_complex' (preferably using
-`fftw_malloc'), create an `fftw_plan', execute it as many times as you
-want with `fftw_execute(plan)', and clean up with
-`fftw_destroy_plan(plan)' (and `fftw_free').  The only difference is
-the routine you use to create the plan:
-
-     fftw_plan fftw_plan_dft_2d(int n0, int n1,
-                                fftw_complex *in, fftw_complex *out,
-                                int sign, unsigned flags);
-     fftw_plan fftw_plan_dft_3d(int n0, int n1, int n2,
-                                fftw_complex *in, fftw_complex *out,
-                                int sign, unsigned flags);
-     fftw_plan fftw_plan_dft(int rank, const int *n,
-                             fftw_complex *in, fftw_complex *out,
-                             int sign, unsigned flags);
-   
-   These routines create plans for `n0' by `n1' two-dimensional (2d)
-transforms, `n0' by `n1' by `n2' 3d transforms, and arbitrary
-`rank'-dimensional transforms, respectively.  In the third case, `n' is
-a pointer to an array `n[rank]' denoting an `n[0]' by `n[1]' by ... by
-`n[rank-1]' transform.  All of these transforms operate on contiguous
-arrays in the C-standard "row-major" order, so that the last dimension
-has the fastest-varying index in the array.  This layout is described
-further in *note Multi-dimensional Array Format::.
-
-   You may have noticed that all the planner routines described so far
-have overlapping functionality.  For example, you can plan a 1d or 2d
-transform by using `fftw_plan_dft' with a `rank' of `1' or `2', or even
-by calling `fftw_plan_dft_3d' with `n0' and/or `n1' equal to `1' (with
-no loss in efficiency).  This pattern continues, and FFTW's planning
-routines in general form a "partial order," sequences of interfaces
-with strictly increasing generality but correspondingly greater
-complexity.
-
-   `fftw_plan_dft' is the most general complex-DFT routine that we
-describe in this tutorial, but there are also the advanced and guru
-interfaces, which allow one to efficiently combine multiple/strided
-transforms into a single FFTW plan, transform a subset of a larger
-multi-dimensional array, and/or to handle more general complex-number
-formats.  For more information, see *note FFTW Reference::.
-
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-File: fftw3.info,  Node: One-Dimensional DFTs of Real Data,  Next: Multi-Dimensional DFTs of Real Data,  Prev: Complex Multi-Dimensional DFTs,  Up: Tutorial
-
-2.3 One-Dimensional DFTs of Real Data
-=====================================
-
-In many practical applications, the input data `in[i]' are purely real
-numbers, in which case the DFT output satisfies the "Hermitian" redundancy:
-`out[i]' is the conjugate of `out[n-i]'.  It is possible to take
-advantage of these circumstances in order to achieve roughly a factor
-of two improvement in both speed and memory usage.
-
-   In exchange for these speed and space advantages, the user sacrifices
-some of the simplicity of FFTW's complex transforms. First of all, the
-input and output arrays are of _different sizes and types_: the input
-is `n' real numbers, while the output is `n/2+1' complex numbers (the
-non-redundant outputs); this also requires slight "padding" of the
-input array for in-place transforms.  Second, the inverse transform
-(complex to real) has the side-effect of _destroying its input array_,
-by default.  Neither of these inconveniences should pose a serious
-problem for users, but it is important to be aware of them.
-
-   The routines to perform real-data transforms are almost the same as
-those for complex transforms: you allocate arrays of `double' and/or
-`fftw_complex' (preferably using `fftw_malloc'), create an `fftw_plan',
-execute it as many times as you want with `fftw_execute(plan)', and
-clean up with `fftw_destroy_plan(plan)' (and `fftw_free').  The only
-differences are that the input (or output) is of type `double' and
-there are new routines to create the plan.  In one dimension:
-
-     fftw_plan fftw_plan_dft_r2c_1d(int n, double *in, fftw_complex *out,
-                                    unsigned flags);
-     fftw_plan fftw_plan_dft_c2r_1d(int n, fftw_complex *in, double *out,
-                                    unsigned flags);
-   
-   for the real input to complex-Hermitian output ("r2c") and
-complex-Hermitian input to real output ("c2r") transforms.  Unlike the
-complex DFT planner, there is no `sign' argument.  Instead, r2c DFTs
-are always `FFTW_FORWARD' and c2r DFTs are always `FFTW_BACKWARD'.  (For
-single/long-double precision `fftwf' and `fftwl', `double' should be
-replaced by `float' and `long double', respectively.)  
-
-   Here, `n' is the "logical" size of the DFT, not necessarily the
-physical size of the array.  In particular, the real (`double') array
-has `n' elements, while the complex (`fftw_complex') array has `n/2+1'
-elements (where the division is rounded down).  For an in-place
-transform, `in' and `out' are aliased to the same array, which must be
-big enough to hold both; so, the real array would actually have
-`2*(n/2+1)' elements, where the elements beyond the first `n' are
-unused padding.  The kth element of the complex array is exactly the
-same as the kth element of the corresponding complex DFT.  All positive
-`n' are supported; products of small factors are most efficient, but an
-O(n log n)  algorithm is used even for prime sizes.
-
-   As noted above, the c2r transform destroys its input array even for
-out-of-place transforms.  This can be prevented, if necessary, by
-including `FFTW_PRESERVE_INPUT' in the `flags', with unfortunately some
-sacrifice in performance.  This flag is also not currently supported
-for multi-dimensional real DFTs (next section).
-
-   Readers familiar with DFTs of real data will recall that the 0th (the
-"DC") and `n/2'-th (the "Nyquist" frequency, when `n' is even) elements
-of the complex output are purely real.  Some implementations therefore
-store the Nyquist element where the DC imaginary part would go, in
-order to make the input and output arrays the same size.  Such packing,
-however, does not generalize well to multi-dimensional transforms, and
-the space savings are miniscule in any case; FFTW does not support it.
-
-   An alternative interface for one-dimensional r2c and c2r DFTs can be
-found in the `r2r' interface (*note The Halfcomplex-format DFT::), with
-"halfcomplex"-format output that _is_ the same size (and type) as the
-input array.  That interface, although it is not very useful for
-multi-dimensional transforms, may sometimes yield better performance.
-
-\1f
-File: fftw3.info,  Node: Multi-Dimensional DFTs of Real Data,  Next: More DFTs of Real Data,  Prev: One-Dimensional DFTs of Real Data,  Up: Tutorial
-
-2.4 Multi-Dimensional DFTs of Real Data
-=======================================
-
-Multi-dimensional DFTs of real data use the following planner routines:
-
-     fftw_plan fftw_plan_dft_r2c_2d(int n0, int n1,
-                                    double *in, fftw_complex *out,
-                                    unsigned flags);
-     fftw_plan fftw_plan_dft_r2c_3d(int n0, int n1, int n2,
-                                    double *in, fftw_complex *out,
-                                    unsigned flags);
-     fftw_plan fftw_plan_dft_r2c(int rank, const int *n,
-                                 double *in, fftw_complex *out,
-                                 unsigned flags);
-   
-   as well as the corresponding `c2r' routines with the input/output
-types swapped.  These routines work similarly to their complex
-analogues, except for the fact that here the complex output array is cut
-roughly in half and the real array requires padding for in-place
-transforms (as in 1d, above).
-
-   As before, `n' is the logical size of the array, and the
-consequences of this on the the format of the complex arrays deserve
-careful attention.  Suppose that the real data has dimensions n[0] x
-n[1] x n[2] x ... x n[d-1]  (in row-major order).  Then, after an r2c
-transform, the output is an n[0] x n[1] x n[2] x ... x (n[d-1]/2 + 1)
-array of `fftw_complex' values in row-major order, corresponding to
-slightly over half of the output of the corresponding complex DFT.
-(The division is rounded down.)  The ordering of the data is otherwise
-exactly the same as in the complex-DFT case.
-
-   Since the complex data is slightly larger than the real data, some
-complications arise for in-place transforms.  In this case, the final
-dimension of the real data must be padded with extra values to
-accommodate the size of the complex data--two values if the last
-dimension is even and one if it is odd.  That is, the last dimension of
-the real data must physically contain 2 * (n[d-1]/2+1) `double' values
-(exactly enough to hold the complex data).  This physical array size
-does not, however, change the _logical_ array size--only n[d-1] values
-are actually stored in the last dimension, and n[d-1] is the last
-dimension passed to the plan-creation routine.
-
-   For example, consider the transform of a two-dimensional real array
-of size `n0' by `n1'.  The output of the r2c transform is a
-two-dimensional complex array of size `n0' by `n1/2+1', where the `y'
-dimension has been cut nearly in half because of redundancies in the
-output.  Because `fftw_complex' is twice the size of `double', the
-output array is slightly bigger than the input array.  Thus, if we want
-to compute the transform in place, we must _pad_ the input array so
-that it is of size `n0' by `2*(n1/2+1)'.  If `n1' is even, then there
-are two padding elements at the end of each row (which need not be
-initialized, as they are only used for output).
-
-   These transforms are unnormalized, so an r2c followed by a c2r
-transform (or vice versa) will result in the original data scaled by
-the number of real data elements--that is, the product of the (logical)
-dimensions of the real data.  
-
-   (Because the last dimension is treated specially, if it is equal to
-`1' the transform is _not_ equivalent to a lower-dimensional r2c/c2r
-transform.  In that case, the last complex dimension also has size `1'
-(`=1/2+1'), and no advantage is gained over the complex transforms.)
-
-\1f
-File: fftw3.info,  Node: More DFTs of Real Data,  Prev: Multi-Dimensional DFTs of Real Data,  Up: Tutorial
-
-2.5 More DFTs of Real Data
-==========================
-
-* Menu:
-
-* The Halfcomplex-format DFT::
-* Real even/odd DFTs (cosine/sine transforms)::
-* The Discrete Hartley Transform::
-
-   FFTW supports several other transform types via a unified "r2r"
-(real-to-real) interface, so called because it takes a real (`double')
-array and outputs a real array of the same size.  These r2r transforms
-currently fall into three categories: DFTs of real input and
-complex-Hermitian output in halfcomplex format, DFTs of real input with
-even/odd symmetry (a.k.a. discrete cosine/sine transforms, DCTs/DSTs),
-and discrete Hartley transforms (DHTs), all described in more detail by
-the following sections.
-
-   The r2r transforms follow the by now familiar interface of creating
-an `fftw_plan', executing it with `fftw_execute(plan)', and destroying
-it with `fftw_destroy_plan(plan)'.  Furthermore, all r2r transforms
-share the same planner interface:
-
-     fftw_plan fftw_plan_r2r_1d(int n, double *in, double *out,
-                                fftw_r2r_kind kind, unsigned flags);
-     fftw_plan fftw_plan_r2r_2d(int n0, int n1, double *in, double *out,
-                                fftw_r2r_kind kind0, fftw_r2r_kind kind1,
-                                unsigned flags);
-     fftw_plan fftw_plan_r2r_3d(int n0, int n1, int n2,
-                                double *in, double *out,
-                                fftw_r2r_kind kind0,
-                                fftw_r2r_kind kind1,
-                                fftw_r2r_kind kind2,
-                                unsigned flags);
-     fftw_plan fftw_plan_r2r(int rank, const int *n, double *in, double *out,
-                             const fftw_r2r_kind *kind, unsigned flags);
-   
-   Just as for the complex DFT, these plan 1d/2d/3d/multi-dimensional
-transforms for contiguous arrays in row-major order, transforming (real)
-input to output of the same size, where `n' specifies the _physical_
-dimensions of the arrays.  All positive `n' are supported (with the
-exception of `n=1' for the `FFTW_REDFT00' kind, noted in the real-even
-subsection below); products of small factors are most efficient
-(factorizing `n-1' and `n+1' for `FFTW_REDFT00' and `FFTW_RODFT00'
-kinds, described below), but an O(n log n)  algorithm is used even for
-prime sizes.
-
-   Each dimension has a "kind" parameter, of type `fftw_r2r_kind',
-specifying the kind of r2r transform to be used for that dimension.  (In
-the case of `fftw_plan_r2r', this is an array `kind[rank]' where
-`kind[i]' is the transform kind for the dimension `n[i]'.)  The kind
-can be one of a set of predefined constants, defined in the following
-subsections.
-
-   In other words, FFTW computes the separable product of the specified
-r2r transforms over each dimension, which can be used e.g. for partial
-differential equations with mixed boundary conditions.  (For some r2r
-kinds, notably the halfcomplex DFT and the DHT, such a separable
-product is somewhat problematic in more than one dimension, however, as
-is described below.)
-
-   In the current version of FFTW, all r2r transforms except for the
-halfcomplex type are computed via pre- or post-processing of
-halfcomplex transforms, and they are therefore not as fast as they
-could be.  Since most other general DCT/DST codes employ a similar
-algorithm, however, FFTW's implementation should provide at least
-competitive performance.
-
-\1f
-File: fftw3.info,  Node: The Halfcomplex-format DFT,  Next: Real even/odd DFTs (cosine/sine transforms),  Prev: More DFTs of Real Data,  Up: More DFTs of Real Data
-
-2.5.1 The Halfcomplex-format DFT
---------------------------------
-
-An r2r kind of `FFTW_R2HC' ("r2hc") corresponds to an r2c DFT (*note
-One-Dimensional DFTs of Real Data::) but with "halfcomplex" format
-output, and may sometimes be faster and/or more convenient than the
-latter.  The inverse "hc2r" transform is of kind `FFTW_HC2R'.  This
-consists of the non-redundant half of the complex output for a 1d
-real-input DFT of size `n', stored as a sequence of `n' real numbers
-(`double') in the format:
-
-   r0, r1, r2, r(n/2), i((n+1)/2-1), ..., i2, i1
-
-   Here, rk is the real part of the kth output, and ik is the imaginary
-part.  (Division by 2 is rounded down.) For a halfcomplex array
-`hc[n]', the kth component thus has its real part in `hc[k]' and its
-imaginary part in `hc[n-k]', with the exception of `k' `==' `0' or
-`n/2' (the latter only if `n' is even)--in these two cases, the
-imaginary part is zero due to symmetries of the real-input DFT, and is
-not stored.  Thus, the r2hc transform of `n' real values is a
-halfcomplex array of length `n', and vice versa for hc2r.  
-
-   Aside from the differing format, the output of
-`FFTW_R2HC'/`FFTW_HC2R' is otherwise exactly the same as for the
-corresponding 1d r2c/c2r transform (i.e. `FFTW_FORWARD'/`FFTW_BACKWARD'
-transforms, respectively).  Recall that these transforms are
-unnormalized, so r2hc followed by hc2r will result in the original data
-multiplied by `n'.  Furthermore, like the c2r transform, an
-out-of-place hc2r transform will _destroy its input_ array.
-
-   Although these halfcomplex transforms can be used with the
-multi-dimensional r2r interface, the interpretation of such a separable
-product of transforms along each dimension is problematic.  For example,
-consider a two-dimensional `n0' by `n1', r2hc by r2hc transform planned
-by `fftw_plan_r2r_2d(n0, n1, in, out, FFTW_R2HC, FFTW_R2HC,
-FFTW_MEASURE)'.  Conceptually, FFTW first transforms the rows (of size
-`n1') to produce halfcomplex rows, and then transforms the columns (of
-size `n0').  Half of these column transforms, however, are of imaginary
-parts, and should therefore be multiplied by i and combined with the
-r2hc transforms of the real columns to produce the 2d DFT amplitudes;
-FFTW's r2r transform does _not_ perform this combination for you.
-Thus, if a multi-dimensional real-input/output DFT is required, we
-recommend using the ordinary r2c/c2r interface (*note Multi-Dimensional
-DFTs of Real Data::).
-
-\1f
-File: fftw3.info,  Node: Real even/odd DFTs (cosine/sine transforms),  Next: The Discrete Hartley Transform,  Prev: The Halfcomplex-format DFT,  Up: More DFTs of Real Data
-
-2.5.2 Real even/odd DFTs (cosine/sine transforms)
--------------------------------------------------
-
-The Fourier transform of a real-even function f(-x) = f(x) is
-real-even, and i times the Fourier transform of a real-odd function
-f(-x) = -f(x) is real-odd.  Similar results hold for a discrete Fourier
-transform, and thus for these symmetries the need for complex
-inputs/outputs is entirely eliminated.  Moreover, one gains a factor of
-two in speed/space from the fact that the data are real, and an
-additional factor of two from the even/odd symmetry: only the
-non-redundant (first) half of the array need be stored.  The result is
-the real-even DFT ("REDFT") and the real-odd DFT ("RODFT"), also known
-as the discrete cosine and sine transforms ("DCT" and "DST"),
-respectively.  
-
-   (In this section, we describe the 1d transforms; multi-dimensional
-transforms are just a separable product of these transforms operating
-along each dimension.)
-
-   Because of the discrete sampling, one has an additional choice: is
-the data even/odd around a sampling point, or around the point halfway
-between two samples?  The latter corresponds to _shifting_ the samples
-by _half_ an interval, and gives rise to several transform variants
-denoted by REDFTab and RODFTab: a and b are 0 or 1, and indicate
-whether the input (a) and/or output (b) are shifted by half a sample (1
-means it is shifted).  These are also known as types I-IV of the DCT
-and DST, and all four types are supported by FFTW's r2r interface.(1)
-
-   The r2r kinds for the various REDFT and RODFT types supported by
-FFTW, along with the boundary conditions at both ends of the _input_
-array (`n' real numbers `in[j=0..n-1]'), are:
-
-   * `FFTW_REDFT00' (DCT-I): even around j=0 and even around j=n-1.  
-
-   * `FFTW_REDFT10' (DCT-II, "the" DCT): even around j=-0.5 and even
-     around j=n-0.5.  
-
-   * `FFTW_REDFT01' (DCT-III, "the" IDCT): even around j=0 and odd
-     around j=n.  
-
-   * `FFTW_REDFT11' (DCT-IV): even around j=-0.5 and odd around j=n-0.5.  
-
-   * `FFTW_RODFT00' (DST-I): odd around j=-1 and odd around j=n.  
-
-   * `FFTW_RODFT10' (DST-II): odd around j=-0.5 and odd around j=n-0.5.  
-
-   * `FFTW_RODFT01' (DST-III): odd around j=-1 and even around j=n-1.  
-
-   * `FFTW_RODFT11' (DST-IV): odd around j=-0.5 and even around j=n-0.5.  
-
-
-   Note that these symmetries apply to the "logical" array being
-transformed; *there are no constraints on your physical input data*.
-So, for example, if you specify a size-5 REDFT00 (DCT-I) of the data
-abcde, it corresponds to the DFT of the logical even array abcdedcb of
-size 8.  A size-4 REDFT10 (DCT-II) of the data abcd corresponds to the
-size-8 logical DFT of the even array abcddcba, shifted by half a sample.
-
-   All of these transforms are invertible.  The inverse of R*DFT00 is
-R*DFT00; of R*DFT10 is R*DFT01 and vice versa (these are often called
-simply "the" DCT and IDCT, respectively); and of R*DFT11 is R*DFT11.
-However, the transforms computed by FFTW are unnormalized, exactly like
-the corresponding real and complex DFTs, so computing a transform
-followed by its inverse yields the original array scaled by N, where N
-is the _logical_ DFT size.  For REDFT00, N=2(n-1); for RODFT00,
-N=2(n+1); otherwise, N=2n.  
-
-   Note that the boundary conditions of the transform output array are
-given by the input boundary conditions of the inverse transform.  Thus,
-the above transforms are all inequivalent in terms of input/output
-boundary conditions, even neglecting the 0.5 shift difference.
-
-   FFTW is most efficient when N is a product of small factors; note
-that this _differs_ from the factorization of the physical size `n' for
-REDFT00 and RODFT00!  There is another oddity: `n=1' REDFT00 transforms
-correspond to N=0, and so are _not defined_ (the planner will return
-`NULL').  Otherwise, any positive `n' is supported.
-
-   For the precise mathematical definitions of these transforms as used
-by FFTW, see *note What FFTW Really Computes::.  (For people accustomed
-to the DCT/DST, FFTW's definitions have a coefficient of 2 in front of
-the cos/sin functions so that they correspond precisely to an even/odd
-DFT of size N.  Some authors also include additional multiplicative
-factors of sqrt(2) for selected inputs and outputs; this makes the
-transform orthogonal, but sacrifices the direct equivalence to a
-symmetric DFT.)
-
-Which type do you need?
-.......................
-
-Since the required flavor of even/odd DFT depends upon your problem,
-you are the best judge of this choice, but we can make a few comments
-on relative efficiency to help you in your selection.  In particular,
-R*DFT01 and R*DFT10 tend to be slightly faster than R*DFT11 (especially
-for odd sizes), while the R*DFT00 transforms are sometimes
-significantly slower (especially for even sizes).(2)
-
-   Thus, if only the boundary conditions on the transform inputs are
-specified, we generally recommend R*DFT10 over R*DFT00 and R*DFT01 over
-R*DFT11 (unless the half-sample shift or the self-inverse property is
-significant for your problem).
-
-   If performance is important to you and you are using only small sizes
-(say n<200), e.g. for multi-dimensional transforms, then you might
-consider generating hard-coded transforms of those sizes and types that
-you are interested in (*note Generating your own code::).
-
-   We are interested in hearing what types of symmetric transforms you
-find most useful.
-
-   ---------- Footnotes ----------
-
-   (1) There are also type V-VIII transforms, which correspond to a
-logical DFT of _odd_ size N, independent of whether the physical size
-`n' is odd, but we do not support these variants.
-
-   (2) R*DFT00 is sometimes slower in FFTW because we discovered that
-the standard algorithm for computing this by a pre/post-processed real
-DFT--the algorithm used in FFTPACK, Numerical Recipes, and other
-sources for decades now--has serious numerical problems: it already
-loses several decimal places of accuracy for 16k sizes.  There seem to
-be only two alternatives in the literature that do not suffer
-similarly: a recursive decomposition into smaller DCTs, which would
-require a large set of codelets for efficiency and generality, or
-sacrificing a factor of ~2 in speed to use a real DFT of twice the
-size.  We currently employ the latter technique for general n, as well
-as a limited form of the former method: a split-radix decomposition
-when n is odd (N a multiple of 4).  For N containing many factors of 2,
-the split-radix method seems to recover most of the speed of the
-standard algorithm without the accuracy tradeoff.
-
-\1f
-File: fftw3.info,  Node: The Discrete Hartley Transform,  Prev: Real even/odd DFTs (cosine/sine transforms),  Up: More DFTs of Real Data
-
-2.5.3 The Discrete Hartley Transform
-------------------------------------
-
-The discrete Hartley transform (DHT) is an invertible linear transform
-closely related to the DFT.  In the DFT, one multiplies each input by
-cos - i * sin (a complex exponential), whereas in the DHT each input is
-multiplied by simply cos + sin.  Thus, the DHT transforms `n' real
-numbers to `n' real numbers, and has the convenient property of being
-its own inverse.  In FFTW, a DHT (of any positive `n') can be specified
-by an r2r kind of `FFTW_DHT'.  
-
-   If you are planning to use the DHT because you've heard that it is
-"faster" than the DFT (FFT), *stop here*.  That story is an old but
-enduring misconception that was debunked in 1987: a properly designed
-real-input FFT (such as FFTW's) has no more operations in general than
-an FHT.  Moreover, in FFTW, the DHT is ordinarily _slower_ than the DFT
-for composite sizes (see below).
-
-   Like the DFT, in FFTW the DHT is unnormalized, so computing a DHT of
-size `n' followed by another DHT of the same size will result in the
-original array multiplied by `n'.  
-
-   The DHT was originally proposed as a more efficient alternative to
-the DFT for real data, but it was subsequently shown that a specialized
-DFT (such as FFTW's r2hc or r2c transforms) could be just as fast.  In
-FFTW, the DHT is actually computed by post-processing an r2hc
-transform, so there is ordinarily no reason to prefer it from a
-performance perspective.(1) However, we have heard rumors that the DHT
-might be the most appropriate transform in its own right for certain
-applications, and we would be very interested to hear from anyone who
-finds it useful.
-
-   If `FFTW_DHT' is specified for multiple dimensions of a
-multi-dimensional transform, FFTW computes the separable product of 1d
-DHTs along each dimension.  Unfortunately, this is not quite the same
-thing as a true multi-dimensional DHT; you can compute the latter, if
-necessary, with at most `rank-1' post-processing passes [see e.g. H.
-Hao and R. N. Bracewell, Proc. IEEE 75, 264-266 (1987)].
-
-   For the precise mathematical definition of the DHT as used by FFTW,
-see *note What FFTW Really Computes::.
-
-   ---------- Footnotes ----------
-
-   (1) We provide the DHT mainly as a byproduct of some internal
-algorithms. FFTW computes a real input/output DFT of _prime_ size by
-re-expressing it as a DHT plus post/pre-processing and then using
-Rader's prime-DFT algorithm adapted to the DHT.
-
-\1f
-File: fftw3.info,  Node: Other Important Topics,  Next: FFTW Reference,  Prev: Tutorial,  Up: Top
-
-3 Other Important Topics
-************************
-
-* Menu:
-
-* Data Alignment::
-* Multi-dimensional Array Format::
-* Words of Wisdom-Saving Plans::
-* Caveats in Using Wisdom::
-
-\1f
-File: fftw3.info,  Node: Data Alignment,  Next: Multi-dimensional Array Format,  Prev: Other Important Topics,  Up: Other Important Topics
-
-3.1 Data Alignment
-==================
-
-* Menu:
-
-* SIMD alignment and fftw_malloc::
-* Stack alignment on x86::
-
-   In order to get the best performance from FFTW, one needs to be
-somewhat aware of two problems related to data alignment on x86
-(Pentia) architectures: alignment of allocated arrays (for use with
-SIMD acceleration), and alignment of the stack.
-
-\1f
-File: fftw3.info,  Node: SIMD alignment and fftw_malloc,  Next: Stack alignment on x86,  Prev: Data Alignment,  Up: Data Alignment
-
-3.1.1 SIMD alignment and fftw_malloc
-------------------------------------
-
-SIMD, which stands for "Single Instruction Multiple Data," is a set of
-special operations supported by some processors to perform a single
-operation on several numbers (usually 2 or 4) simultaneously.  SIMD
-floating-point instructions are available on several popular CPUs:
-SSE/SSE2 (single/double precision) on Pentium III and higher and on
-AMD64, AltiVec (single precision) on some PowerPCs (Apple G4 and
-higher), and MIPS Paired Single.  FFTW can be compiled to support the
-SIMD instructions on any of these systems.  
-
-   A program linking to an FFTW library compiled with SIMD support can
-obtain a nonnegligible speedup for most complex and r2c/c2r transforms.
-In order to obtain this speedup, however, the arrays of complex (or
-real) data passed to FFTW must be specially aligned in memory
-(typically 16-byte aligned), and often this alignment is more stringent
-than that provided by the usual `malloc' (etc.)  allocation routines.
-
-   In order to guarantee proper alignment for SIMD, therefore, in case
-your program is ever linked against a SIMD-using FFTW, we recommend
-allocating your transform data with `fftw_malloc' and de-allocating it
-with `fftw_free'.  These have exactly the same interface and behavior as
-`malloc'/`free', except that for a SIMD FFTW they ensure that the
-returned pointer has the necessary alignment (by calling `memalign' or
-its equivalent on your OS).
-
-   You are not _required_ to use `fftw_malloc'.  You can allocate your
-data in any way that you like, from `malloc' to `new' (in C++) to a
-fixed-size array declaration.  If the array happens not to be properly
-aligned, FFTW will not use the SIMD extensions.  
-
-\1f
-File: fftw3.info,  Node: Stack alignment on x86,  Prev: SIMD alignment and fftw_malloc,  Up: Data Alignment
-
-3.1.2 Stack alignment on x86
-----------------------------
-
-On the Pentium and subsequent x86 processors, there is a substantial
-performance penalty if double-precision variables are not stored 8-byte
-aligned; a factor of two or more is not unusual.  Unfortunately, the
-stack (the place that local variables and subroutine arguments live) is
-not guaranteed by the Intel ABI to be 8-byte aligned.
-
-   Recent versions of `gcc' (as well as most other compilers, we are
-told, such as Intel's, Metrowerks', and Microsoft's) are able to keep
-the stack 8-byte aligned; `gcc' does this by default (see
-`-mpreferred-stack-boundary' in the `gcc' documentation).  If you are
-not certain whether your compiler maintains stack alignment by default,
-it is a good idea to make sure.
-
-   Unfortunately, `gcc' only _preserves_ the stack alignment--as a
-result, if the stack starts off misaligned, it will always be
-misaligned, with a disastrous effect on performance (in double
-precision).  To prevent this, FFTW includes hacks to align its own
-stack if necessary, so it should perform well even if you call it from
-a program with a misaligned stack.  Currently, our hacks support `gcc'
-and the Intel C compiler; if you use another compiler you are on your
-own.  Fortunately, recent versions of glibc (on GNU/Linux) provide a
-properly-aligned starting stack, but this was not the case with a
-number of older versions, and we are not certain of the situation on
-other operating systems.  Hopefully, as time goes by this will become
-less of a concern.
-
-\1f
-File: fftw3.info,  Node: Multi-dimensional Array Format,  Next: Words of Wisdom-Saving Plans,  Prev: Data Alignment,  Up: Other Important Topics
-
-3.2 Multi-dimensional Array Format
-==================================
-
-This section describes the format in which multi-dimensional arrays are
-stored in FFTW.  We felt that a detailed discussion of this topic was
-necessary.  Since several different formats are common, this topic is
-often a source of confusion among users.
-
-* Menu:
-
-* Row-major Format::
-* Column-major Format::
-* Fixed-size Arrays in C::
-* Dynamic Arrays in C::
-* Dynamic Arrays in C-The Wrong Way::
-
-\1f
-File: fftw3.info,  Node: Row-major Format,  Next: Column-major Format,  Prev: Multi-dimensional Array Format,  Up: Multi-dimensional Array Format
-
-3.2.1 Row-major Format
-----------------------
-
-The multi-dimensional arrays passed to `fftw_plan_dft' etcetera are
-expected to be stored as a single contiguous block in "row-major" order
-(sometimes called "C order").  Basically, this means that as you step
-through adjacent memory locations, the first dimension's index varies
-most slowly and the last dimension's index varies most quickly.
-
-   To be more explicit, let us consider an array of rank d whose
-dimensions are n[0] x n[1] x n[2] x ... x n[d-1] . Now, we specify a
-location in the array by a sequence of d (zero-based) indices, one for
-each dimension: (i[0], i[1], ..., i[d-1]).  If the array is stored in
-row-major order, then this element is located at the position i[d-1] +
-n[d-1] * (i[d-2] + n[d-2] * (... + n[1] * i[0])).
-
-   Note that, for the ordinary complex DFT, each element of the array
-must be of type `fftw_complex'; i.e. a (real, imaginary) pair of
-(double-precision) numbers.
-
-   In the advanced FFTW interface, the physical dimensions n from which
-the indices are computed can be different from (larger than) the
-logical dimensions of the transform to be computed, in order to
-transform a subset of a larger array.  Note also that, in the advanced
-interface, the expression above is multiplied by a "stride" to get the
-actual array index--this is useful in situations where each element of
-the multi-dimensional array is actually a data structure (or another
-array), and you just want to transform a single field. In the basic
-interface, however, the stride is 1.  
-
-\1f
-File: fftw3.info,  Node: Column-major Format,  Next: Fixed-size Arrays in C,  Prev: Row-major Format,  Up: Multi-dimensional Array Format
-
-3.2.2 Column-major Format
--------------------------
-
-Readers from the Fortran world are used to arrays stored in
-"column-major" order (sometimes called "Fortran order").  This is
-essentially the exact opposite of row-major order in that, here, the
-_first_ dimension's index varies most quickly.
-
-   If you have an array stored in column-major order and wish to
-transform it using FFTW, it is quite easy to do.  When creating the
-plan, simply pass the dimensions of the array to the planner in
-_reverse order_.  For example, if your array is a rank three `N x M x
-L' matrix in column-major order, you should pass the dimensions of the
-array as if it were an `L x M x N' matrix (which it is, from the
-perspective of FFTW).  This is done for you _automatically_ by the FFTW
-Fortran interface (*note Calling FFTW from Fortran::).  
-
-\1f
-File: fftw3.info,  Node: Fixed-size Arrays in C,  Next: Dynamic Arrays in C,  Prev: Column-major Format,  Up: Multi-dimensional Array Format
-
-3.2.3 Fixed-size Arrays in C
-----------------------------
-
-A multi-dimensional array whose size is declared at compile time in C
-is _already_ in row-major order.  You don't have to do anything special
-to transform it.  For example:
-
-     {
-          fftw_complex data[N0][N1][N2];
-          fftw_plan plan;
-          ...
-          plan = fftw_plan_dft_3d(N0, N1, N2, &data[0][0][0], &data[0][0][0],
-                                  FFTW_FORWARD, FFTW_ESTIMATE);
-          ...
-     }
-
-   This will plan a 3d in-place transform of size `N0 x N1 x N2'.
-Notice how we took the address of the zero-th element to pass to the
-planner (we could also have used a typecast).
-
-   However, we tend to _discourage_ users from declaring their arrays
-in this way, for two reasons.  First, this allocates the array on the
-stack ("automatic" storage), which has a very limited size on most
-operating systems (declaring an array with more than a few thousand
-elements will often cause a crash).  (You can get around this
-limitation on man1 systems by declaring the array as `static' and/or
-global, but that has its own drawbacks.)  Second, it may not optimally
-align the array for use with a SIMD FFTW (*note SIMD alignment and
-fftw_malloc::).  Instead, we recommend using `fftw_malloc', as
-described below.
-
-\1f
-File: fftw3.info,  Node: Dynamic Arrays in C,  Next: Dynamic Arrays in C-The Wrong Way,  Prev: Fixed-size Arrays in C,  Up: Multi-dimensional Array Format
-
-3.2.4 Dynamic Arrays in C
--------------------------
-
-We recommend allocating most arrays dynamically, with `fftw_malloc'.
-This isn't too hard to do, although it is not as straightforward for
-multi-dimensional arrays as it is for one-dimensional arrays.
-
-   Creating the array is simple: using a dynamic-allocation routine like
-`fftw_malloc', allocate an array big enough to store N `fftw_complex'
-values (for a complex DFT), where N is the product of the sizes of the
-array dimensions (i.e. the total number of complex values in the
-array).  For example, here is code to allocate a 5 x 12 x 27  rank-3
-array: 
-
-     fftw_complex *an_array;
-     an_array = (fftw_complex*) fftw_malloc(5*12*27 * sizeof(fftw_complex));
-
-   Accessing the array elements, however, is more tricky--you can't
-simply use multiple applications of the `[]' operator like you could
-for fixed-size arrays.  Instead, you have to explicitly compute the
-offset into the array using the formula given earlier for row-major
-arrays.  For example, to reference the (i,j,k)-th element of the array
-allocated above, you would use the expression `an_array[k + 27 * (j +
-12 * i)]'.
-
-   This pain can be alleviated somewhat by defining appropriate macros,
-or, in C++, creating a class and overloading the `()' operator.  The
-recent C99 standard provides a way to reinterpret the dynamic array as
-a "variable-length" multi-dimensional array amenable to `[]', but this
-feature is not yet widely supported by compilers.  
-
-\1f
-File: fftw3.info,  Node: Dynamic Arrays in C-The Wrong Way,  Prev: Dynamic Arrays in C,  Up: Multi-dimensional Array Format
-
-3.2.5 Dynamic Arrays in C--The Wrong Way
-----------------------------------------
-
-A different method for allocating multi-dimensional arrays in C is
-often suggested that is incompatible with FFTW: _using it will cause
-FFTW to die a painful death_.  We discuss the technique here, however,
-because it is so commonly known and used.  This method is to create
-arrays of pointers of arrays of pointers of ...etcetera.  For example,
-the analogue in this method to the example above is:
-
-     int i,j;
-     fftw_complex ***a_bad_array;  /* another way to make a 5x12x27 array */
-
-     a_bad_array = (fftw_complex ***) malloc(5 * sizeof(fftw_complex **));
-     for (i = 0; i < 5; ++i) {
-          a_bad_array[i] =
-             (fftw_complex **) malloc(12 * sizeof(fftw_complex *));
-          for (j = 0; j < 12; ++j)
-               a_bad_array[i][j] =
-                     (fftw_complex *) malloc(27 * sizeof(fftw_complex));
-     }
-
-   As you can see, this sort of array is inconvenient to allocate (and
-deallocate).  On the other hand, it has the advantage that the
-(i,j,k)-th element can be referenced simply by `a_bad_array[i][j][k]'.
-
-   If you like this technique and want to maximize convenience in
-accessing the array, but still want to pass the array to FFTW, you can
-use a hybrid method.  Allocate the array as one contiguous block, but
-also declare an array of arrays of pointers that point to appropriate
-places in the block.  That sort of trick is beyond the scope of this
-documentation; for more information on multi-dimensional arrays in C,
-see the `comp.lang.c' FAQ (http://www.eskimo.com/~scs/C-faq/s6.html).
-
-\1f
-File: fftw3.info,  Node: Words of Wisdom-Saving Plans,  Next: Caveats in Using Wisdom,  Prev: Multi-dimensional Array Format,  Up: Other Important Topics
-
-3.3 Words of Wisdom--Saving Plans
-=================================
-
-FFTW implements a method for saving plans to disk and restoring them.
-In fact, what FFTW does is more general than just saving and loading
-plans.  The mechanism is called "wisdom".  Here, we describe this
-feature at a high level. *Note FFTW Reference::, for a less casual but
-more complete discussion of how to use wisdom in FFTW.
-
-   Plans created with the `FFTW_MEASURE', `FFTW_PATIENT', or
-`FFTW_EXHAUSTIVE' options produce near-optimal FFT performance, but may
-require a long time to compute because FFTW must measure the runtime of
-many possible plans and select the best one.  This setup is designed
-for the situations where so many transforms of the same size must be
-computed that the start-up time is irrelevant.  For short
-initialization times, but slower transforms, we have provided
-`FFTW_ESTIMATE'.  The `wisdom' mechanism is a way to get the best of
-both worlds: you compute a good plan once, save it to disk, and later
-reload it as many times as necessary.  The wisdom mechanism can
-actually save and reload many plans at once, not just one.  
-
-   Whenever you create a plan, the FFTW planner accumulates wisdom,
-which is information sufficient to reconstruct the plan.  After
-planning, you can save this information to disk by means of the
-function:
-     void fftw_export_wisdom_to_file(FILE *output_file);
-   
-   The next time you run the program, you can restore the wisdom with
-`fftw_import_wisdom_from_file' (which returns non-zero on success), and
-then recreate the plan using the same flags as before.
-     int fftw_import_wisdom_from_file(FILE *input_file);
-   
-   Wisdom is automatically used for any size to which it is applicable,
-as long as the planner flags are not more "patient" than those with
-which the wisdom was created.  For example, wisdom created with
-`FFTW_MEASURE' can be used if you later plan with `FFTW_ESTIMATE' or
-`FFTW_MEASURE', but not with `FFTW_PATIENT'.
-
-   The `wisdom' is cumulative, and is stored in a global, private data
-structure managed internally by FFTW.  The storage space required is
-minimal, proportional to the logarithm of the sizes the wisdom was
-generated from.  If memory usage is a concern, however, the wisdom can
-be forgotten and its associated memory freed by calling:
-     void fftw_forget_wisdom(void);
-   
-   Wisdom can be exported to a file, a string, or any other medium.
-For details, see *note Wisdom::.
-
-\1f
-File: fftw3.info,  Node: Caveats in Using Wisdom,  Prev: Words of Wisdom-Saving Plans,  Up: Other Important Topics
-
-3.4 Caveats in Using Wisdom
-===========================
-
-     For in much wisdom is much grief, and he that increaseth knowledge
-     increaseth sorrow.  [Ecclesiastes 1:18] 
-
-   There are pitfalls to using wisdom, in that it can negate FFTW's
-ability to adapt to changing hardware and other conditions. For
-example, it would be perfectly possible to export wisdom from a program
-running on one processor and import it into a program running on
-another processor.  Doing so, however, would mean that the second
-program would use plans optimized for the first processor, instead of
-the one it is running on.
-
-   It should be safe to reuse wisdom as long as the hardware and program
-binaries remain unchanged. (Actually, the optimal plan may change even
-between runs of the same binary on identical hardware, due to
-differences in the virtual memory environment, etcetera.  Users
-seriously interested in performance should worry about this problem,
-too.)  It is likely that, if the same wisdom is used for two different
-program binaries, even running on the same machine, the plans may be
-sub-optimal because of differing code alignments.  It is therefore wise
-to recreate wisdom every time an application is recompiled.  The more
-the underlying hardware and software changes between the creation of
-wisdom and its use, the greater grows the risk of sub-optimal plans.
-
-   Nevertheless, if the choice is between using `FFTW_ESTIMATE' or
-using possibly-suboptimal wisdom (created on the same machine, but for a
-different binary), the wisdom is likely to be better.  For this reason,
-we provide a function to import wisdom from a standard system-wide
-location (`/etc/fftw/wisdom' on Unix): 
-
-     int fftw_import_system_wisdom(void);
-   
-   FFTW also provides a standalone program, `fftw-wisdom' (described by
-its own `man' page on Unix) with which users can create wisdom, e.g.
-for a canonical set of sizes to store in the system wisdom file.  *Note
-Wisdom Utilities::.  
-
-\1f
-File: fftw3.info,  Node: FFTW Reference,  Next: Multi-threaded FFTW,  Prev: Other Important Topics,  Up: Top
-
-4 FFTW Reference
-****************
-
-This chapter provides a complete reference for all sequential (i.e.,
-one-processor) FFTW functions.  Parallel transforms are described in
-later chapters.
-
-* Menu:
-
-* Data Types and Files::
-* Using Plans::
-* Basic Interface::
-* Advanced Interface::
-* Guru Interface::
-* New-array Execute Functions::
-* Wisdom::
-* What FFTW Really Computes::
-
-\1f
-File: fftw3.info,  Node: Data Types and Files,  Next: Using Plans,  Prev: FFTW Reference,  Up: FFTW Reference
-
-4.1 Data Types and Files
-========================
-
-All programs using FFTW should include its header file:
-
-     #include <fftw3.h>
-
-   You must also link to the FFTW library.  On Unix, this means adding
-`-lfftw3 -lm' at the _end_ of the link command.
-
-* Menu:
-
-* Complex numbers::
-* Precision::
-* Memory Allocation::
-
-\1f
-File: fftw3.info,  Node: Complex numbers,  Next: Precision,  Prev: Data Types and Files,  Up: Data Types and Files
-
-4.1.1 Complex numbers
----------------------
-
-The default FFTW interface uses `double' precision for all
-floating-point numbers, and defines a `fftw_complex' type to hold
-complex numbers as:
-
-     typedef double fftw_complex[2];
-   
-   Here, the `[0]' element holds the real part and the `[1]' element
-holds the imaginary part.
-
-   Alternatively, if you have a C compiler (such as `gcc') that
-supports the C99 revision of the ANSI C standard, you can use C's new
-native complex type (which is binary-compatible with the typedef above).
-In particular, if you `#include <complex.h>' _before_ `<fftw3.h>', then
-`fftw_complex' is defined to be the native complex type and you can
-manipulate it with ordinary arithmetic (e.g. `x = y * (3+4*I)', where
-`x' and `y' are `fftw_complex' and `I' is the standard symbol for the
-imaginary unit); 
-
-   C++ has its own `complex<T>' template class, defined in the standard
-`<complex>' header file.  Reportedly, the C++ standards committee has
-recently agreed to mandate that the storage format used for this type
-be binary-compatible with the C99 type, i.e. an array `T[2]' with
-consecutive real `[0]' and imaginary `[1]' parts.  (See report
-WG21/N1388
-(http://anubis.dkuug.dk/JTC1/SC22/WG21/docs/papers/2002/1388.pdf).)
-Although not part of the official standard as of this writing, the
-proposal stated that: "This solution has been tested with all current
-major implementations of the standard library and shown to be working."
-To the extent that this is true, if you have a variable
-`complex<double> *x', you can pass it directly to FFTW via
-`reinterpret_cast<fftw_complex*>(x)'.  
-
-\1f
-File: fftw3.info,  Node: Precision,  Next: Memory Allocation,  Prev: Complex numbers,  Up: Data Types and Files
-
-4.1.2 Precision
----------------
-
-You can install single and long-double precision versions of FFTW,
-which replace `double' with `float' and `long double', respectively
-(*note Installation and Customization::).  To use these interfaces, you:
-
-   * Link to the single/long-double libraries; on Unix, `-lfftw3f' or
-     `-lfftw3l' instead of (or in addition to) `-lfftw3'.  (You can
-     link to the different-precision libraries simultaneously.)
-
-   * Include the _same_ `<fftw3.h>' header file.
-
-   * Replace all lowercase instances of `fftw_' with `fftwf_' or
-     `fftwl_' for single or long-double precision, respectively.
-     (`fftw_complex' becomes `fftwf_complex', `fftw_execute' becomes
-     `fftwf_execute', etcetera.)
-
-   * Uppercase names, i.e. names beginning with `FFTW_', remain the
-     same.
-
-   * Replace `double' with `float' or `long double' for subroutine
-     parameters.
-
-
-   Depending upon your compiler and/or hardware, `long double' may not
-be any more precise than `double' (or may not be supported at all,
-although it is standard in C99).  
-
-\1f
-File: fftw3.info,  Node: Memory Allocation,  Prev: Precision,  Up: Data Types and Files
-
-4.1.3 Memory Allocation
------------------------
-
-     void *fftw_malloc(size_t n);
-     void fftw_free(void *p);
-
-   These are functions that behave identically to `malloc' and `free',
-except that they guarantee that the returned pointer obeys any special
-alignment restrictions imposed by any algorithm in FFTW (e.g. for SIMD
-acceleration).  *Note Data Alignment::.  
-
-   Data allocated by `fftw_malloc' _must_ be deallocated by `fftw_free'
-and not by the ordinary `free'.
-
-   These routines simply call through to your operating system's
-`malloc' or, if necessary, its aligned equivalent (e.g. `memalign'), so
-you normally need not worry about any significant time or space
-overhead.  You are _not required_ to use them to allocate your data,
-but we strongly recommend it.
-
-   Note: in C++, just as with ordinary `malloc', you must typecast the
-output of `fftw_malloc' to whatever pointer type you are allocating.  
-
-\1f
-File: fftw3.info,  Node: Using Plans,  Next: Basic Interface,  Prev: Data Types and Files,  Up: FFTW Reference
-
-4.2 Using Plans
-===============
-
-Plans for all transform types in FFTW are stored as type `fftw_plan'
-(an opaque pointer type), and are created by one of the various
-planning routines described in the following sections.  An `fftw_plan'
-contains all information necessary to compute the transform, including
-the pointers to the input and output arrays.
-
-     void fftw_execute(const fftw_plan plan);
-   
-   This executes the `plan', to compute the corresponding transform on
-the arrays for which it was planned (which must still exist).  The plan
-is not modified, and `fftw_execute' can be called as many times as
-desired.
-
-   To apply a given plan to a different array, you can use the
-new-array execute interface.  *Note New-array Execute Functions::.
-
-   `fftw_execute' (and equivalents) is the only function in FFTW
-guaranteed to be thread-safe; see *note Thread safety::.
-
-   This function:
-     void fftw_destroy_plan(fftw_plan plan);
-   deallocates the `plan' and all its associated data.
-
-   FFTW's planner saves some other persistent data, such as the
-accumulated wisdom and a list of algorithms available in the current
-configuration.  If you want to deallocate all of that and reset FFTW to
-the pristine state it was in when you started your program, you can
-call:
-
-     void fftw_cleanup(void);
-   
-   After calling `fftw_cleanup', all existing plans become undefined,
-and you should not attempt to execute them nor to destroy them.  You can
-however create and execute/destroy new plans, in which case FFTW starts
-accumulating wisdom information again.
-
-   `fftw_cleanup' does not deallocate your plans, however.  To prevent
-memory leaks, you must still call `fftw_destroy_plan' before executing
-`fftw_cleanup'.
-
-   The following two routines are provided purely for academic purposes
-(that is, for entertainment).
-
-     void fftw_flops(const fftw_plan plan,
-                     double *add, double *mul, double *fma);
-   
-   Given a `plan', set `add', `mul', and `fma' to an exact count of the
-number of floating-point additions, multiplications, and fused
-multiply-add operations involved in the plan's execution.  The total
-number of floating-point operations (flops) is `add + mul + 2*fma', or
-`add + mul + fma' if the hardware supports fused multiply-add
-instructions (although the number of FMA operations is only approximate
-because of compiler voodoo).  (The number of operations should be an
-integer, but we use `double' to avoid overflowing `int' for large
-transforms; the arguments are of type `double' even for single and
-long-double precision versions of FFTW.)
-
-     void fftw_fprint_plan(const fftw_plan plan, FILE *output_file);
-     void fftw_print_plan(const fftw_plan plan);
-   
-   This outputs a "nerd-readable" representation of the `plan' to the
-given file or to `stdout', respectively.
-
-\1f
-File: fftw3.info,  Node: Basic Interface,  Next: Advanced Interface,  Prev: Using Plans,  Up: FFTW Reference
-
-4.3 Basic Interface
-===================
-
-The basic interface, which we expect to satisfy the needs of most users,
-provides planner routines for transforms of a single contiguous array
-with any of FFTW's supported transform types.
-
-* Menu:
-
-* Complex DFTs::
-* Planner Flags::
-* Real-data DFTs::
-* Real-data DFT Array Format::
-* Real-to-Real Transforms::
-* Real-to-Real Transform Kinds::
-
-\1f
-File: fftw3.info,  Node: Complex DFTs,  Next: Planner Flags,  Prev: Basic Interface,  Up: Basic Interface
-
-4.3.1 Complex DFTs
-------------------
-
-     fftw_plan fftw_plan_dft_1d(int n,
-                                fftw_complex *in, fftw_complex *out,
-                                int sign, unsigned flags);
-     fftw_plan fftw_plan_dft_2d(int n0, int n1,
-                                fftw_complex *in, fftw_complex *out,
-                                int sign, unsigned flags);
-     fftw_plan fftw_plan_dft_3d(int n0, int n1, int n2,
-                                fftw_complex *in, fftw_complex *out,
-                                int sign, unsigned flags);
-     fftw_plan fftw_plan_dft(int rank, const int *n,
-                             fftw_complex *in, fftw_complex *out,
-                             int sign, unsigned flags);
-
-   Plan a complex input/output discrete Fourier transform (DFT) in zero
-or more dimensions, returning an `fftw_plan' (*note Using Plans::).
-
-   Once you have created a plan for a certain transform type and
-parameters, then creating another plan of the same type and parameters,
-but for different arrays, is fast and shares constant data with the
-first plan (if it still exists).
-
-   The planner returns `NULL' if the plan cannot be created.  A
-non-`NULL' plan is always returned by the basic interface unless you
-are using a customized FFTW configuration supporting a restricted set
-of transforms.
-
-Arguments
-.........
-
-   * `rank' is the dimensionality of the transform (it should be the
-     size of the array `*n'), and can be any non-negative integer.  The
-     `_1d', `_2d', and `_3d' planners correspond to a `rank' of `1',
-     `2', and `3', respectively.  A `rank' of zero is equivalent to a
-     transform of size 1, i.e. a copy of one number from input to
-     output.
-
-   * `n', or `n0'/`n1'/`n2', or `n[rank]', respectively, gives the size
-     of the transform dimensions.  They can be any positive integer.
-
-        - Multi-dimensional arrays are stored in row-major order with
-          dimensions: `n0' x `n1'; or `n0' x `n1' x `n2'; or `n[0]' x
-          `n[1]' x ... x `n[rank-1]'.  *Note Multi-dimensional Array
-          Format::.
-
-        - FFTW is best at handling sizes of the form 2^a 3^b 5^c 7^d
-          11^e 13^f, where e+f is either 0 or 1, and the other exponents
-          are arbitrary.  Other sizes are computed by means of a slow,
-          general-purpose algorithm (which nevertheless retains O(n log
-          n)
-
-          performance even for prime sizes).  It is possible to
-          customize FFTW for different array sizes; see *note
-          Installation and Customization::.  Transforms whose sizes are
-          powers of 2 are especially fast.
-
-   * `in' and `out' point to the input and output arrays of the
-     transform, which may be the same (yielding an in-place transform).  These
-     arrays are overwritten during planning, unless `FFTW_ESTIMATE' is
-     used in the flags.  (The arrays need not be initialized, but they
-     must be allocated.)
-
-     If `in == out', the transform is "in-place" and the input array is
-     overwritten. If `in != out', the two arrays must not overlap (but
-     FFTW does not check for this condition).
-
-   * `sign' is the sign of the exponent in the formula that defines the
-     Fourier transform.  It can be -1 (= `FFTW_FORWARD') or +1 (=
-     `FFTW_BACKWARD').
-
-   * `flags' is a bitwise OR (`|') of zero or more planner flags, as
-     defined in *note Planner Flags::.
-
-
-   FFTW computes an unnormalized transform: computing a forward
-followed by a backward transform (or vice versa) will result in the
-original data multiplied by the size of the transform (the product of
-the dimensions).  For more information, see *note What FFTW Really
-Computes::.
-
-\1f
-File: fftw3.info,  Node: Planner Flags,  Next: Real-data DFTs,  Prev: Complex DFTs,  Up: Basic Interface
-
-4.3.2 Planner Flags
--------------------
-
-All of the planner routines in FFTW accept an integer `flags' argument,
-which is a bitwise OR (`|') of zero or more of the flag constants
-defined below.  These flags control the rigor (and time) of the
-planning process, and can also impose (or lift) restrictions on the
-type of transform algorithm that is employed.
-
-   _Important:_ the planner overwrites the input array during planning
-unless a saved plan (*note Wisdom::) is available for that problem, so
-you should initialize your input data after creating the plan.  The
-only exceptions to this are the `FFTW_ESTIMATE' and `FFTW_WISDOM_ONLY'
-flags, as mentioned below.
-
-   In all cases, if wisdom is available for the given problem that was
-created with equal-or-greater planning rigor, then it is used instead.
-For example, in `FFTW_ESTIMATE' mode any available wisdom is used,
-whereas in `FFTW_PATIENT' mode only wisdom created in patient or
-exhaustive mode can be used.  *Note Words of Wisdom-Saving Plans::.
-
-Planning-rigor flags
-....................
-
-   * `FFTW_ESTIMATE' specifies that, instead of actual measurements of
-     different algorithms, a simple heuristic is used to pick a
-     (probably sub-optimal) plan quickly.  With this flag, the
-     input/output arrays are not overwritten during planning.
-
-   * `FFTW_MEASURE' tells FFTW to find an optimized plan by actually
-     _computing_ several FFTs and measuring their execution time.
-     Depending on your machine, this can take some time (often a few
-     seconds).  `FFTW_MEASURE' is the default planning option.
-
-   * `FFTW_PATIENT' is like `FFTW_MEASURE', but considers a wider range
-     of algorithms and often produces a "more optimal" plan (especially
-     for large transforms), but at the expense of several times longer
-     planning time (especially for large transforms).
-
-   * `FFTW_EXHAUSTIVE' is like `FFTW_PATIENT', but considers an even
-     wider range of algorithms, including many that we think are
-     unlikely to be fast, to produce the most optimal plan but with a
-     substantially increased planning time.
-
-   * `FFTW_WISDOM_ONLY' is a special planning mode in which the plan is
-     only created if wisdom is available for the given problem, and
-     otherwise a `NULL' plan is returned.  This can be combined with
-     other flags, e.g. `FFTW_WISDOM_ONLY | FFTW_PATIENT' creates a plan
-     only if wisdom is available that was created in `FFTW_PATIENT' or
-     `FFTW_EXHAUSTIVE' mode.  The `FFTW_WISDOM_ONLY' flag is intended
-     for users who need to detect whether wisdom is available; for
-     example, if wisdom is not available one may wish to allocate new
-     arrays for planning so that user data is not overwritten.
-
-
-Algorithm-restriction flags
-...........................
-
-   * `FFTW_DESTROY_INPUT' specifies that an out-of-place transform is
-     allowed to _overwrite its input_ array with arbitrary data; this
-     can sometimes allow more efficient algorithms to be employed.  
-
-   * `FFTW_PRESERVE_INPUT' specifies that an out-of-place transform must
-     _not change its input_ array.  This is ordinarily the _default_,
-     except for c2r and hc2r (i.e. complex-to-real) transforms for
-     which `FFTW_DESTROY_INPUT' is the default.  In the latter cases,
-     passing `FFTW_PRESERVE_INPUT' will attempt to use algorithms that
-     do not destroy the input, at the expense of worse performance; for
-     multi-dimensional c2r transforms, however, no input-preserving
-     algorithms are implemented and the planner will return `NULL' if
-     one is requested.  
-
-   * `FFTW_UNALIGNED' specifies that the algorithm may not impose any
-     unusual alignment requirements on the input/output arrays (i.e. no
-     SIMD may be used).  This flag is normally _not necessary_, since
-     the planner automatically detects misaligned arrays.  The only use
-     for this flag is if you want to use the new-array execute
-     interface to execute a given plan on a different array that may
-     not be aligned like the original.  (Using `fftw_malloc' makes this
-     flag unnecessary even then.)
-
-
-Limiting planning time
-......................
-
-     extern void fftw_set_timelimit(double seconds);
-
-   This function instructs FFTW to spend at most `seconds' seconds
-(approximately) in the planner.  If `seconds == FFTW_NO_TIMELIMIT' (the
-default value, which is negative), then planning time is unbounded.
-Otherwise, FFTW plans with a progressively wider range of algorithms
-until the the given time limit is reached or the given range of
-algorithms is explored, returning the best available plan.  
-
-   For example, specifying `FFTW_PATIENT' first plans in
-`FFTW_ESTIMATE' mode, then in `FFTW_MEASURE' mode, then finally (time
-permitting) in `FFTW_PATIENT'.  If `FFTW_EXHAUSTIVE' is specified
-instead, the planner will further progress to `FFTW_EXHAUSTIVE' mode.
-
-   Note that the `seconds' argument specifies only a rough limit; in
-practice, the planner may use somewhat more time if the time limit is
-reached when the planner is in the middle of an operation that cannot
-be interrupted.  At the very least, the planner will complete planning
-in `FFTW_ESTIMATE' mode (which is thus equivalent to a time limit of 0).
-
-\1f
-File: fftw3.info,  Node: Real-data DFTs,  Next: Real-data DFT Array Format,  Prev: Planner Flags,  Up: Basic Interface
-
-4.3.3 Real-data DFTs
---------------------
-
-     fftw_plan fftw_plan_dft_r2c_1d(int n,
-                                    double *in, fftw_complex *out,
-                                    unsigned flags);
-     fftw_plan fftw_plan_dft_r2c_2d(int n0, int n1,
-                                    double *in, fftw_complex *out,
-                                    unsigned flags);
-     fftw_plan fftw_plan_dft_r2c_3d(int n0, int n1, int n2,
-                                    double *in, fftw_complex *out,
-                                    unsigned flags);
-     fftw_plan fftw_plan_dft_r2c(int rank, const int *n,
-                                 double *in, fftw_complex *out,
-                                 unsigned flags);
-
-   Plan a real-input/complex-output discrete Fourier transform (DFT) in
-zero or more dimensions, returning an `fftw_plan' (*note Using Plans::).
-
-   Once you have created a plan for a certain transform type and
-parameters, then creating another plan of the same type and parameters,
-but for different arrays, is fast and shares constant data with the
-first plan (if it still exists).
-
-   The planner returns `NULL' if the plan cannot be created.  A
-non-`NULL' plan is always returned by the basic interface unless you
-are using a customized FFTW configuration supporting a restricted set
-of transforms, or if you use the `FFTW_PRESERVE_INPUT' flag with a
-multi-dimensional out-of-place c2r transform (see below).
-
-Arguments
-.........
-
-   * `rank' is the dimensionality of the transform (it should be the
-     size of the array `*n'), and can be any non-negative integer.  The
-     `_1d', `_2d', and `_3d' planners correspond to a `rank' of `1',
-     `2', and `3', respectively.  A `rank' of zero is equivalent to a
-     transform of size 1, i.e. a copy of one number (with zero
-     imaginary part) from input to output.
-
-   * `n', or `n0'/`n1'/`n2', or `n[rank]', respectively, gives the size
-     of the _logical_ transform dimensions.  They can be any positive
-     integer.  This is different in general from the _physical_ array
-     dimensions, which are described in *note Real-data DFT Array
-     Format::.
-
-        - FFTW is best at handling sizes of the form 2^a 3^b 5^c 7^d
-          11^e 13^f, where e+f is either 0 or 1, and the other exponents
-          are arbitrary.  Other sizes are computed by means of a slow,
-          general-purpose algorithm (which nevertheless retains O(n log
-          n)
-
-          performance even for prime sizes).  (It is possible to
-          customize FFTW for different array sizes; see *note
-          Installation and Customization::.)  Transforms whose sizes
-          are powers of 2 are especially fast, and it is generally
-          beneficial for the _last_ dimension of an r2c/c2r transform
-          to be _even_.
-
-   * `in' and `out' point to the input and output arrays of the
-     transform, which may be the same (yielding an in-place transform).  These
-     arrays are overwritten during planning, unless `FFTW_ESTIMATE' is
-     used in the flags.  (The arrays need not be initialized, but they
-     must be allocated.)  For an in-place transform, it is important to
-     remember that the real array will require padding, described in
-     *note Real-data DFT Array Format::.  
-
-   * `flags' is a bitwise OR (`|') of zero or more planner flags, as
-     defined in *note Planner Flags::.
-
-
-   The inverse transforms, taking complex input (storing the
-non-redundant half of a logically Hermitian array) to real output, are
-given by:
-
-     fftw_plan fftw_plan_dft_c2r_1d(int n,
-                                    fftw_complex *in, double *out,
-                                    unsigned flags);
-     fftw_plan fftw_plan_dft_c2r_2d(int n0, int n1,
-                                    fftw_complex *in, double *out,
-                                    unsigned flags);
-     fftw_plan fftw_plan_dft_c2r_3d(int n0, int n1, int n2,
-                                    fftw_complex *in, double *out,
-                                    unsigned flags);
-     fftw_plan fftw_plan_dft_c2r(int rank, const int *n,
-                                 fftw_complex *in, double *out,
-                                 unsigned flags);
-   
-   The arguments are the same as for the r2c transforms, except that the
-input and output data formats are reversed.
-
-   FFTW computes an unnormalized transform: computing an r2c followed
-by a c2r transform (or vice versa) will result in the original data
-multiplied by the size of the transform (the product of the logical
-dimensions).  An r2c transform produces the same output as a
-`FFTW_FORWARD' complex DFT of the same input, and a c2r transform is
-correspondingly equivalent to `FFTW_BACKWARD'.  For more information,
-see *note What FFTW Really Computes::.
-
-\1f
-File: fftw3.info,  Node: Real-data DFT Array Format,  Next: Real-to-Real Transforms,  Prev: Real-data DFTs,  Up: Basic Interface
-
-4.3.4 Real-data DFT Array Format
---------------------------------
-
-The output of a DFT of real data (r2c) contains symmetries that, in
-principle, make half of the outputs redundant (*note What FFTW Really
-Computes::).  (Similarly for the input of an inverse c2r transform.)  In
-practice, it is not possible to entirely realize these savings in an
-efficient and understandable format that generalizes to
-multi-dimensional transforms.  Instead, the output of the r2c
-transforms is _slightly_ over half of the output of the corresponding
-complex transform.  We do not "pack" the data in any way, but store it
-as an ordinary array of `fftw_complex' values.  In fact, this data is
-simply a subsection of what would be the array in the corresponding
-complex transform.
-
-   Specifically, for a real transform of d (= `rank') dimensions n[0] x
-n[1] x n[2] x ... x n[d-1] , the complex data is an n[0] x n[1] x n[2]
-x ... x (n[d-1]/2 + 1)  array of `fftw_complex' values in row-major
-order (with the division rounded down).  That is, we only store the
-_lower_ half (non-negative frequencies), plus one element, of the last
-dimension of the data from the ordinary complex transform.  (We could
-have instead taken half of any other dimension, but implementation
-turns out to be simpler if the last, contiguous, dimension is used.)
-
-   For an out-of-place transform, the real data is simply an array with
-physical dimensions n[0] x n[1] x n[2] x ... x n[d-1]  in row-major
-order.
-
-   For an in-place transform, some complications arise since the
-complex data is slightly larger than the real data.  In this case, the
-final dimension of the real data must be _padded_ with extra values to
-accommodate the size of the complex data--two extra if the last
-dimension is even and one if it is odd.  That is, the last dimension of
-the real data must physically contain 2 * (n[d-1]/2+1) `double' values
-(exactly enough to hold the complex data).  This physical array size
-does not, however, change the _logical_ array size--only n[d-1] values
-are actually stored in the last dimension, and n[d-1] is the last
-dimension passed to the planner.
-
-\1f
-File: fftw3.info,  Node: Real-to-Real Transforms,  Next: Real-to-Real Transform Kinds,  Prev: Real-data DFT Array Format,  Up: Basic Interface
-
-4.3.5 Real-to-Real Transforms
------------------------------
-
-     fftw_plan fftw_plan_r2r_1d(int n, double *in, double *out,
-                                fftw_r2r_kind kind, unsigned flags);
-     fftw_plan fftw_plan_r2r_2d(int n0, int n1, double *in, double *out,
-                                fftw_r2r_kind kind0, fftw_r2r_kind kind1,
-                                unsigned flags);
-     fftw_plan fftw_plan_r2r_3d(int n0, int n1, int n2,
-                                double *in, double *out,
-                                fftw_r2r_kind kind0,
-                                fftw_r2r_kind kind1,
-                                fftw_r2r_kind kind2,
-                                unsigned flags);
-     fftw_plan fftw_plan_r2r(int rank, const int *n, double *in, double *out,
-                             const fftw_r2r_kind *kind, unsigned flags);
-
-   Plan a real input/output (r2r) transform of various kinds in zero or
-more dimensions, returning an `fftw_plan' (*note Using Plans::).
-
-   Once you have created a plan for a certain transform type and
-parameters, then creating another plan of the same type and parameters,
-but for different arrays, is fast and shares constant data with the
-first plan (if it still exists).
-
-   The planner returns `NULL' if the plan cannot be created.  A
-non-`NULL' plan is always returned by the basic interface unless you
-are using a customized FFTW configuration supporting a restricted set
-of transforms, or for size-1 `FFTW_REDFT00' kinds (which are not
-defined).  
-
-Arguments
-.........
-
-   * `rank' is the dimensionality of the transform (it should be the
-     size of the arrays `*n' and `*kind'), and can be any non-negative
-     integer.  The `_1d', `_2d', and `_3d' planners correspond to a
-     `rank' of `1', `2', and `3', respectively.  A `rank' of zero is
-     equivalent to a copy of one number from input to output.
-
-   * `n', or `n0'/`n1'/`n2', or `n[rank]', respectively, gives the
-     (physical) size of the transform dimensions.  They can be any
-     positive integer.
-
-        - Multi-dimensional arrays are stored in row-major order with
-          dimensions: `n0' x `n1'; or `n0' x `n1' x `n2'; or `n[0]' x
-          `n[1]' x ... x `n[rank-1]'.  *Note Multi-dimensional Array
-          Format::.
-
-        - FFTW is generally best at handling sizes of the form 2^a 3^b
-          5^c 7^d 11^e 13^f, where e+f is either 0 or 1, and the other
-          exponents are arbitrary.  Other sizes are computed by means
-          of a slow, general-purpose algorithm (which nevertheless
-          retains O(n log n)
-
-          performance even for prime sizes).  (It is possible to
-          customize FFTW for different array sizes; see *note
-          Installation and Customization::.)  Transforms whose sizes
-          are powers of 2 are especially fast.
-
-        - For a `REDFT00' or `RODFT00' transform kind in a dimension of
-          size n, it is n-1 or n+1, respectively, that should be
-          factorizable in the above form.
-
-   * `in' and `out' point to the input and output arrays of the
-     transform, which may be the same (yielding an in-place transform).  These
-     arrays are overwritten during planning, unless `FFTW_ESTIMATE' is
-     used in the flags.  (The arrays need not be initialized, but they
-     must be allocated.)
-
-   * `kind', or `kind0'/`kind1'/`kind2', or `kind[rank]', is the kind
-     of r2r transform used for the corresponding dimension.  The valid
-     kind constants are described in *note Real-to-Real Transform
-     Kinds::.  In a multi-dimensional transform, what is computed is
-     the separable product formed by taking each transform kind along
-     the corresponding dimension, one dimension after another.
-
-   * `flags' is a bitwise OR (`|') of zero or more planner flags, as
-     defined in *note Planner Flags::.
-
-
-\1f
-File: fftw3.info,  Node: Real-to-Real Transform Kinds,  Prev: Real-to-Real Transforms,  Up: Basic Interface
-
-4.3.6 Real-to-Real Transform Kinds
-----------------------------------
-
-FFTW currently supports 11 different r2r transform kinds, specified by
-one of the constants below.  For the precise definitions of these
-transforms, see *note What FFTW Really Computes::.  For a more
-colloquial introduction to these transform kinds, see *note More DFTs
-of Real Data::.
-
-   For dimension of size `n', there is a corresponding "logical"
-dimension `N' that determines the normalization (and the optimal
-factorization); the formula for `N' is given for each kind below.
-Also, with each transform kind is listed its corrsponding inverse
-transform.  FFTW computes unnormalized transforms: a transform followed
-by its inverse will result in the original data multiplied by `N' (or
-the product of the `N''s for each dimension, in multi-dimensions).  
-
-   * `FFTW_R2HC' computes a real-input DFT with output in "halfcomplex"
-     format, i.e. real and imaginary parts for a transform of size `n'
-     stored as: r0, r1, r2, r(n/2), i((n+1)/2-1), ..., i2, i1 (Logical
-     `N=n', inverse is `FFTW_HC2R'.)
-
-   * `FFTW_HC2R' computes the reverse of `FFTW_R2HC', above.  (Logical
-     `N=n', inverse is `FFTW_R2HC'.)
-
-   * `FFTW_DHT' computes a discrete Hartley transform.  (Logical `N=n',
-     inverse is `FFTW_DHT'.)  
-
-   * `FFTW_REDFT00' computes an REDFT00 transform, i.e. a DCT-I.
-     (Logical `N=2*(n-1)', inverse is `FFTW_REDFT00'.)  
-
-   * `FFTW_REDFT10' computes an REDFT10 transform, i.e. a DCT-II
-     (sometimes called "the" DCT).  (Logical `N=2*n', inverse is
-     `FFTW_REDFT01'.)
-
-   * `FFTW_REDFT01' computes an REDFT01 transform, i.e. a DCT-III
-     (sometimes called "the" IDCT, being the inverse of DCT-II).
-     (Logical `N=2*n', inverse is `FFTW_REDFT=10'.)  
-
-   * `FFTW_REDFT11' computes an REDFT11 transform, i.e. a DCT-IV.
-     (Logical `N=2*n', inverse is `FFTW_REDFT11'.)
-
-   * `FFTW_RODFT00' computes an RODFT00 transform, i.e. a DST-I.
-     (Logical `N=2*(n+1)', inverse is `FFTW_RODFT00'.)  
-
-   * `FFTW_RODFT10' computes an RODFT10 transform, i.e. a DST-II.
-     (Logical `N=2*n', inverse is `FFTW_RODFT01'.)
-
-   * `FFTW_RODFT01' computes an RODFT01 transform, i.e. a DST-III.
-     (Logical `N=2*n', inverse is `FFTW_RODFT=10'.)
-
-   * `FFTW_RODFT11' computes an RODFT11 transform, i.e. a DST-IV.
-     (Logical `N=2*n', inverse is `FFTW_RODFT11'.)
-
-
-\1f
-File: fftw3.info,  Node: Advanced Interface,  Next: Guru Interface,  Prev: Basic Interface,  Up: FFTW Reference
-
-4.4 Advanced Interface
-======================
-
-FFTW's "advanced" interface supplements the basic interface with four
-new planner routines, providing a new level of flexibility: you can plan
-a transform of multiple arrays simultaneously, operate on non-contiguous
-(strided) data, and transform a subset of a larger multi-dimensional
-array.  Other than these additional features, the planner operates in
-the same fashion as in the basic interface, and the resulting
-`fftw_plan' is used in the same way (*note Using Plans::).
-
-* Menu:
-
-* Advanced Complex DFTs::
-* Advanced Real-data DFTs::
-* Advanced Real-to-real Transforms::
-
-\1f
-File: fftw3.info,  Node: Advanced Complex DFTs,  Next: Advanced Real-data DFTs,  Prev: Advanced Interface,  Up: Advanced Interface
-
-4.4.1 Advanced Complex DFTs
----------------------------
-
-     fftw_plan fftw_plan_many_dft(int rank, const int *n, int howmany,
-                                  fftw_complex *in, const int *inembed,
-                                  int istride, int idist,
-                                  fftw_complex *out, const int *onembed,
-                                  int ostride, int odist,
-                                  int sign, unsigned flags);
-
-   This plans multidimensional complex DFTs, and is exactly the same as
-`fftw_plan_dft' except for the new parameters `howmany',
-{`i',`o'}`nembed', {`i',`o'}`stride', and {`i',`o'}`dist'.
-
-   `howmany' is the number of transforms to compute, where the `k'-th
-transform is of the arrays starting at `in+k*idist' and `out+k*odist'.
-The resulting plans can often be faster than calling FFTW multiple
-times for the individual transforms.  The basic `fftw_plan_dft'
-interface corresponds to `howmany=1' (in which case the `dist'
-parameters are ignored).  
-
-   The two `nembed' parameters (which should be arrays of length
-`rank') indicate the sizes of the input and output array dimensions,
-respectively, where the transform is of a subarray of size `n'.  (Each
-dimension of `n' should be `<=' the corresponding dimension of the
-`nembed' arrays.)  That is, the input and output arrays are stored in
-row-major order with size given by `nembed' (not counting the strides
-and howmany multiplicities).  Passing `NULL' for an `nembed' parameter
-is equivalent to passing `n' (i.e. same physical and logical
-dimensions, as in the basic interface.)
-
-   The `stride' parameters indicate that the `j'-th element of the
-input or output arrays is located at `j*istride' or `j*ostride',
-respectively.  (For a multi-dimensional array, `j' is the ordinary
-row-major index.)  When combined with the `k'-th transform in a
-`howmany' loop, from above, this means that the (`j',`k')-th element is
-at `j*stride+k*dist'.  (The basic `fftw_plan_dft' interface corresponds
-to a stride of 1.)  
-
-   For in-place transforms, the input and output `stride' and `dist'
-parameters should be the same; otherwise, the planner may return `NULL'.
-
-   Arrays `n', `inembed', and `onembed' are not used after this
-function returns.  You can safely free or reuse them.
-
-   So, for example, to transform a sequence of contiguous arrays, stored
-one after another, one would use a `stride' of 1 and a `dist' of N,
-where N is the product of the dimensions.  In another example, to
-transform an array of contiguous "vectors" of length M, one would use a
-`howmany' of M, a `stride' of M, and a `dist' of 1.  
-
-\1f
-File: fftw3.info,  Node: Advanced Real-data DFTs,  Next: Advanced Real-to-real Transforms,  Prev: Advanced Complex DFTs,  Up: Advanced Interface
-
-4.4.2 Advanced Real-data DFTs
------------------------------
-
-     fftw_plan fftw_plan_many_dft_r2c(int rank, const int *n, int howmany,
-                                      double *in, const int *inembed,
-                                      int istride, int idist,
-                                      fftw_complex *out, const int *onembed,
-                                      int ostride, int odist,
-                                      unsigned flags);
-     fftw_plan fftw_plan_many_dft_c2r(int rank, const int *n, int howmany,
-                                      fftw_complex *in, const int *inembed,
-                                      int istride, int idist,
-                                      double *out, const int *onembed,
-                                      int ostride, int odist,
-                                      unsigned flags);
-
-   Like `fftw_plan_many_dft', these two functions add `howmany',
-`nembed', `stride', and `dist' parameters to the `fftw_plan_dft_r2c'
-and `fftw_plan_dft_c2r' functions, but otherwise behave the same as the
-basic interface.
-
-   The interpretation of `howmany', `stride', and `dist' are the same
-as for `fftw_plan_many_dft', above.  Note that the `stride' and `dist'
-for the real array are in units of `double', and for the complex array
-are in units of `fftw_complex'.
-
-   If an `nembed' parameter is `NULL', it is interpreted as what it
-would be in the basic interface, as described in *note Real-data DFT
-Array Format::.  That is, for the complex array the size is assumed to
-be the same as `n', but with the last dimension cut roughly in half.
-For the real array, the size is assumed to be `n' if the transform is
-out-of-place, or `n' with the last dimension "padded" if the transform
-is in-place.
-
-   If an `nembed' parameter is non-`NULL', it is interpreted as the
-physical size of the corresponding array, in row-major order, just as
-for `fftw_plan_many_dft'.  In this case, each dimension of `nembed'
-should be `>=' what it would be in the basic interface (e.g. the halved
-or padded `n').
-
-   Arrays `n', `inembed', and `onembed' are not used after this
-function returns.  You can safely free or reuse them.
-
-\1f
-File: fftw3.info,  Node: Advanced Real-to-real Transforms,  Prev: Advanced Real-data DFTs,  Up: Advanced Interface
-
-4.4.3 Advanced Real-to-real Transforms
---------------------------------------
-
-     fftw_plan fftw_plan_many_r2r(int rank, const int *n, int howmany,
-                                  double *in, const int *inembed,
-                                  int istride, int idist,
-                                  double *out, const int *onembed,
-                                  int ostride, int odist,
-                                  const fftw_r2r_kind *kind, unsigned flags);
-
-   Like `fftw_plan_many_dft', this functions adds `howmany', `nembed',
-`stride', and `dist' parameters to the `fftw_plan_r2r' function, but
-otherwise behave the same as the basic interface.  The interpretation
-of those additional parameters are the same as for
-`fftw_plan_many_dft'.  (Of course, the `stride' and `dist' parameters
-are now in units of `double', not `fftw_complex'.)
-
-   Arrays `n', `inembed', `onembed', and `kind' are not used after this
-function returns.  You can safely free or reuse them.
-
-\1f
-File: fftw3.info,  Node: Guru Interface,  Next: New-array Execute Functions,  Prev: Advanced Interface,  Up: FFTW Reference
-
-4.5 Guru Interface
-==================
-
-The "guru" interface to FFTW is intended to expose as much as possible
-of the flexibility in the underlying FFTW architecture.  It allows one
-to compute multi-dimensional "vectors" (loops) of multi-dimensional
-transforms, where each vector/transform dimension has an independent
-size and stride.  One can also use more general complex-number formats,
-e.g. separate real and imaginary arrays.
-
-   For those users who require the flexibility of the guru interface,
-it is important that they pay special attention to the documentation
-lest they shoot themselves in the foot.
-
-* Menu:
-
-* Interleaved and split arrays::
-* Guru vector and transform sizes::
-* Guru Complex DFTs::
-* Guru Real-data DFTs::
-* Guru Real-to-real Transforms::
-* 64-bit Guru Interface::
-
-\1f
-File: fftw3.info,  Node: Interleaved and split arrays,  Next: Guru vector and transform sizes,  Prev: Guru Interface,  Up: Guru Interface
-
-4.5.1 Interleaved and split arrays
-----------------------------------
-
-The guru interface supports two representations of complex numbers,
-which we call the interleaved and the split format.
-
-   The "interleaved" format is the same one used by the basic and
-advanced interfaces, and it is documented in *note Complex numbers::.
-In the interleaved format, you provide pointers to the real part of a
-complex number, and the imaginary part understood to be stored in the
-next memory location.  
-
-   The "split" format allows separate pointers to the real and
-imaginary parts of a complex array.  
-
-   Technically, the interleaved format is redundant, because you can
-always express an interleaved array in terms of a split array with
-appropriate pointers and strides.  On the other hand, the interleaved
-format is simpler to use, and it is common in practice.  Hence, FFTW
-supports it as a special case.
-
-\1f
-File: fftw3.info,  Node: Guru vector and transform sizes,  Next: Guru Complex DFTs,  Prev: Interleaved and split arrays,  Up: Guru Interface
-
-4.5.2 Guru vector and transform sizes
--------------------------------------
-
-The guru interface introduces one basic new data structure,
-`fftw_iodim', that is used to specify sizes and strides for
-multi-dimensional transforms and vectors:
-
-     typedef struct {
-          int n;
-          int is;
-          int os;
-     } fftw_iodim;
-   
-   Here, `n' is the size of the dimension, and `is' and `os' are the
-strides of that dimension for the input and output arrays.  (The stride
-is the separation of consecutive elements along this dimension.)
-
-   The meaning of the stride parameter depends on the type of the array
-that the stride refers to.  _If the array is interleaved complex,
-strides are expressed in units of complex numbers (`fftw_complex').  If
-the array is split complex or real, strides are expressed in units of
-real numbers (`double')._  This convention is consistent with the usual
-pointer arithmetic in the C language.  An interleaved array is denoted
-by a pointer `p' to `fftw_complex', so that `p+1' points to the next
-complex number.  Split arrays are denoted by pointers to `double', in
-which case pointer arithmetic operates in units of `sizeof(double)'.  
-
-   The guru planner interfaces all take a (`rank', `dims[rank]') pair
-describing the transform size, and a (`howmany_rank',
-`howmany_dims[howmany_rank]') pair describing the "vector" size (a
-multi-dimensional loop of transforms to perform), where `dims' and
-`howmany_dims' are arrays of `fftw_iodim'.
-
-   For example, the `howmany' parameter in the advanced complex-DFT
-interface corresponds to `howmany_rank' = 1, `howmany_dims[0].n' =
-`howmany', `howmany_dims[0].is' = `idist', and `howmany_dims[0].os' =
-`odist'.  (To compute a single transform, you can just use
-`howmany_rank' = 0.)
-
-   A row-major multidimensional array with dimensions `n[rank]' (*note
-Row-major Format::) corresponds to `dims[i].n' = `n[i]' and the
-recurrence `dims[i].is' = `n[i+1] * dims[i+1].is' (similarly for `os').
-The stride of the last (`i=rank-1') dimension is the overall stride of
-the array.  e.g. to be equivalent to the advanced complex-DFT
-interface, you would have `dims[rank-1].is' = `istride' and
-`dims[rank-1].os' = `ostride'.  
-
-   In general, we only guarantee FFTW to return a non-`NULL' plan if
-the vector and transform dimensions correspond to a set of distinct
-indices, and for in-place transforms the input/output strides should be
-the same.
-
-\1f
-File: fftw3.info,  Node: Guru Complex DFTs,  Next: Guru Real-data DFTs,  Prev: Guru vector and transform sizes,  Up: Guru Interface
-
-4.5.3 Guru Complex DFTs
------------------------
-
-     fftw_plan fftw_plan_guru_dft(
-          int rank, const fftw_iodim *dims,
-          int howmany_rank, const fftw_iodim *howmany_dims,
-          fftw_complex *in, fftw_complex *out,
-          int sign, unsigned flags);
-
-     fftw_plan fftw_plan_guru_split_dft(
-          int rank, const fftw_iodim *dims,
-          int howmany_rank, const fftw_iodim *howmany_dims,
-          double *ri, double *ii, double *ro, double *io,
-          unsigned flags);
-
-   These two functions plan a complex-data, multi-dimensional DFT for
-the interleaved and split format, respectively.  Transform dimensions
-are given by (`rank', `dims') over a multi-dimensional vector (loop) of
-dimensions (`howmany_rank', `howmany_dims').  `dims' and `howmany_dims'
-should point to `fftw_iodim' arrays of length `rank' and
-`howmany_rank', respectively.
-
-   `flags' is a bitwise OR (`|') of zero or more planner flags, as
-defined in *note Planner Flags::.
-
-   In the `fftw_plan_guru_dft' function, the pointers `in' and `out'
-point to the interleaved input and output arrays, respectively.  The
-sign can be either -1 (= `FFTW_FORWARD') or +1 (= `FFTW_BACKWARD').  If
-the pointers are equal, the transform is in-place.
-
-   In the `fftw_plan_guru_split_dft' function, `ri' and `ii' point to
-the real and imaginary input arrays, and `ro' and `io' point to the
-real and imaginary output arrays.  The input and output pointers may be
-the same, indicating an in-place transform.  For example, for
-`fftw_complex' pointers `in' and `out', the corresponding parameters
-are:
-
-     ri = (double *) in;
-     ii = (double *) in + 1;
-     ro = (double *) out;
-     io = (double *) out + 1;
-
-   Because `fftw_plan_guru_split_dft' accepts split arrays, strides are
-expressed in units of `double'.  For a contiguous `fftw_complex' array,
-the overall stride of the transform should be 2, the distance between
-consecutive real parts or between consecutive imaginary parts; see
-*note Guru vector and transform sizes::.  Note that the dimension
-strides are applied equally to the real and imaginary parts; real and
-imaginary arrays with different strides are not supported.
-
-   There is no `sign' parameter in `fftw_plan_guru_split_dft'.  This
-function always plans for an `FFTW_FORWARD' transform.  To plan for an
-`FFTW_BACKWARD' transform, you can exploit the identity that the
-backwards DFT is equal to the forwards DFT with the real and imaginary
-parts swapped.  For example, in the case of the `fftw_complex' arrays
-above, the `FFTW_BACKWARD' transform is computed by the parameters:
-
-     ri = (double *) in + 1;
-     ii = (double *) in;
-     ro = (double *) out + 1;
-     io = (double *) out;
-
-\1f
-File: fftw3.info,  Node: Guru Real-data DFTs,  Next: Guru Real-to-real Transforms,  Prev: Guru Complex DFTs,  Up: Guru Interface
-
-4.5.4 Guru Real-data DFTs
--------------------------
-
-     fftw_plan fftw_plan_guru_dft_r2c(
-          int rank, const fftw_iodim *dims,
-          int howmany_rank, const fftw_iodim *howmany_dims,
-          double *in, fftw_complex *out,
-          unsigned flags);
-
-     fftw_plan fftw_plan_guru_split_dft_r2c(
-          int rank, const fftw_iodim *dims,
-          int howmany_rank, const fftw_iodim *howmany_dims,
-          double *in, double *ro, double *io,
-          unsigned flags);
-
-     fftw_plan fftw_plan_guru_dft_c2r(
-          int rank, const fftw_iodim *dims,
-          int howmany_rank, const fftw_iodim *howmany_dims,
-          fftw_complex *in, double *out,
-          unsigned flags);
-
-     fftw_plan fftw_plan_guru_split_dft_c2r(
-          int rank, const fftw_iodim *dims,
-          int howmany_rank, const fftw_iodim *howmany_dims,
-          double *ri, double *ii, double *out,
-          unsigned flags);
-
-   Plan a real-input (r2c) or real-output (c2r), multi-dimensional DFT
-with transform dimensions given by (`rank', `dims') over a
-multi-dimensional vector (loop) of dimensions (`howmany_rank',
-`howmany_dims').  `dims' and `howmany_dims' should point to
-`fftw_iodim' arrays of length `rank' and `howmany_rank', respectively.
-As for the basic and advanced interfaces, an r2c transform is
-`FFTW_FORWARD' and a c2r transform is `FFTW_BACKWARD'.
-
-   The _last_ dimension of `dims' is interpreted specially: that
-dimension of the real array has size `dims[rank-1].n', but that
-dimension of the complex array has size `dims[rank-1].n/2+1' (division
-rounded down).  The strides, on the other hand, are taken to be exactly
-as specified.  It is up to the user to specify the strides
-appropriately for the peculiar dimensions of the data, and we do not
-guarantee that the planner will succeed (return non-`NULL') for any
-dimensions other than those described in *note Real-data DFT Array
-Format:: and generalized in *note Advanced Real-data DFTs::.  (That is,
-for an in-place transform, each individual dimension should be able to
-operate in place.)  
-
-   `in' and `out' point to the input and output arrays for r2c and c2r
-transforms, respectively.  For split arrays, `ri' and `ii' point to the
-real and imaginary input arrays for a c2r transform, and `ro' and `io'
-point to the real and imaginary output arrays for an r2c transform.
-`in' and `ro' or `ri' and `out' may be the same, indicating an in-place
-transform.   (In-place transforms where `in' and `io' or `ii' and `out'
-are the same are not currently supported.)
-
-   `flags' is a bitwise OR (`|') of zero or more planner flags, as
-defined in *note Planner Flags::.
-
-   In-place transforms of rank greater than 1 are currently only
-supported for interleaved arrays.  For split arrays, the planner will
-return `NULL'.  
-
-\1f
-File: fftw3.info,  Node: Guru Real-to-real Transforms,  Next: 64-bit Guru Interface,  Prev: Guru Real-data DFTs,  Up: Guru Interface
-
-4.5.5 Guru Real-to-real Transforms
-----------------------------------
-
-     fftw_plan fftw_plan_guru_r2r(int rank, const fftw_iodim *dims,
-                                  int howmany_rank,
-                                  const fftw_iodim *howmany_dims,
-                                  double *in, double *out,
-                                  const fftw_r2r_kind *kind,
-                                  unsigned flags);
-
-   Plan a real-to-real (r2r) multi-dimensional `FFTW_FORWARD' transform
-with transform dimensions given by (`rank', `dims') over a
-multi-dimensional vector (loop) of dimensions (`howmany_rank',
-`howmany_dims').  `dims' and `howmany_dims' should point to
-`fftw_iodim' arrays of length `rank' and `howmany_rank', respectively.
-
-   The transform kind of each dimension is given by the `kind'
-parameter, which should point to an array of length `rank'.  Valid
-`fftw_r2r_kind' constants are given in *note Real-to-Real Transform
-Kinds::.
-
-   `in' and `out' point to the real input and output arrays; they may
-be the same, indicating an in-place transform.
-
-   `flags' is a bitwise OR (`|') of zero or more planner flags, as
-defined in *note Planner Flags::.
-
-\1f
-File: fftw3.info,  Node: 64-bit Guru Interface,  Prev: Guru Real-to-real Transforms,  Up: Guru Interface
-
-4.5.6 64-bit Guru Interface
----------------------------
-
-When compiled in 64-bit mode on a 64-bit architecture (where addresses
-are 64 bits wide), FFTW uses 64-bit quantities internally for all
-transform sizes, strides, and so on--you don't have to do anything
-special to exploit this.  However, in the ordinary FFTW interfaces, you
-specify the transform size by an `int' quantity, which is normally only
-32 bits wide.  This means that, even though FFTW is using 64-bit sizes
-internally, you cannot specify a single transform dimension larger than
-2^31-1 numbers.
-
-   We expect that few users will require transforms larger than this,
-but, for those who do, we provide a 64-bit version of the guru
-interface in which all sizes are specified as integers of type
-`ptrdiff_t' instead of `int'.  (`ptrdiff_t' is a signed integer type
-defined by the C standard to be wide enough to represent address
-differences, and thus must be at least 64 bits wide on a 64-bit
-machine.)  We stress that there is _no performance advantage_ to using
-this interface--the same internal FFTW code is employed regardless--and
-it is only necessary if you want to specify very large transform sizes.  
-
-   In particular, the 64-bit guru interface is a set of planner routines
-that are exactly the same as the guru planner routines, except that
-they are named with `guru64' instead of `guru' and they take arguments
-of type `fftw_iodim64' instead of `fftw_iodim'.  For example, instead
-of `fftw_plan_guru_dft', we have `fftw_plan_guru64_dft'.
-
-     fftw_plan fftw_plan_guru64_dft(
-          int rank, const fftw_iodim64 *dims,
-          int howmany_rank, const fftw_iodim64 *howmany_dims,
-          fftw_complex *in, fftw_complex *out,
-          int sign, unsigned flags);
-   
-   The `fftw_iodim64' type is similar to `fftw_iodim', with the same
-interpretation, except that it uses type `ptrdiff_t' instead of type
-`int'.
-
-     typedef struct {
-          ptrdiff_t n;
-          ptrdiff_t is;
-          ptrdiff_t os;
-     } fftw_iodim64;
-   
-   Every other `fftw_plan_guru' function also has a `fftw_plan_guru64'
-equivalent, but we do not repeat their documentation here since they
-are identical to the 32-bit versions except as noted above.
-
-\1f
-File: fftw3.info,  Node: New-array Execute Functions,  Next: Wisdom,  Prev: Guru Interface,  Up: FFTW Reference
-
-4.6 New-array Execute Functions
-===============================
-
-Normally, one executes a plan for the arrays with which the plan was
-created, by calling `fftw_execute(plan)' as described in *note Using
-Plans::.  However, it is possible for sophisticated users to apply a
-given plan to a _different_ array using the "new-array execute"
-functions detailed below, provided that the following conditions are
-met:
-
-   * The array size, strides, etcetera are the same (since those are
-     set by the plan).
-
-   * The input and output arrays are the same (in-place) or different
-     (out-of-place) if the plan was originally created to be in-place or
-     out-of-place, respectively.
-
-   * For split arrays, the separations between the real and imaginary
-     parts, `ii-ri' and `io-ro', are the same as they were for the
-     input and output arrays when the plan was created.  (This
-     condition is automatically satisfied for interleaved arrays.)
-
-   * The "alignment" of the new input/output arrays is the same as that
-     of the input/output arrays when the plan was created, unless the
-     plan was created with the `FFTW_UNALIGNED' flag.  Here, the
-     alignment is a platform-dependent quantity (for example, it is the
-     address modulo 16 if SSE SIMD instructions are used, but the
-     address modulo 4 for non-SIMD single-precision FFTW on the same
-     machine).  In general, only arrays allocated with `fftw_malloc'
-     are guaranteed to be equally aligned (*note SIMD alignment and
-     fftw_malloc::).
-
-
-   The alignment issue is especially critical, because if you don't use
-`fftw_malloc' then you may have little control over the alignment of
-arrays in memory.  For example, neither the C++ `new' function nor the
-Fortran `allocate' statement provide strong enough guarantees about
-data alignment.  If you don't use `fftw_malloc', therefore, you
-probably have to use `FFTW_UNALIGNED' (which disables most SIMD
-support).  If possible, it is probably better for you to simply create
-multiple plans (creating a new plan is quick once one exists for a
-given size), or better yet re-use the same array for your transforms.
-
-   If you are tempted to use the new-array execute interface because you
-want to transform a known bunch of arrays of the same size, you should
-probably go use the advanced interface instead (*note Advanced
-Interface::)).
-
-   The new-array execute functions are:
-
-     void fftw_execute_dft(
-          const fftw_plan p,
-          fftw_complex *in, fftw_complex *out);
-
-     void fftw_execute_split_dft(
-          const fftw_plan p,
-          double *ri, double *ii, double *ro, double *io);
-
-     void fftw_execute_dft_r2c(
-          const fftw_plan p,
-          double *in, fftw_complex *out);
-
-     void fftw_execute_split_dft_r2c(
-          const fftw_plan p,
-          double *in, double *ro, double *io);
-
-     void fftw_execute_dft_c2r(
-          const fftw_plan p,
-          fftw_complex *in, double *out);
-
-     void fftw_execute_split_dft_c2r(
-          const fftw_plan p,
-          double *ri, double *ii, double *out);
-
-     void fftw_execute_r2r(
-          const fftw_plan p,
-          double *in, double *out);
-   
-   These execute the `plan' to compute the corresponding transform on
-the input/output arrays specified by the subsequent arguments.  The
-input/output array arguments have the same meanings as the ones passed
-to the guru planner routines in the preceding sections.  The `plan' is
-not modified, and these routines can be called as many times as
-desired, or intermixed with calls to the ordinary `fftw_execute'.
-
-   The `plan' _must_ have been created for the transform type
-corresponding to the execute function, e.g. it must be a complex-DFT
-plan for `fftw_execute_dft'.  Any of the planner routines for that
-transform type, from the basic to the guru interface, could have been
-used to create the plan, however.
-
-\1f
-File: fftw3.info,  Node: Wisdom,  Next: What FFTW Really Computes,  Prev: New-array Execute Functions,  Up: FFTW Reference
-
-4.7 Wisdom
-==========
-
-This section documents the FFTW mechanism for saving and restoring
-plans from disk.  This mechanism is called "wisdom".
-
-* Menu:
-
-* Wisdom Export::
-* Wisdom Import::
-* Forgetting Wisdom::
-* Wisdom Utilities::
-
-\1f
-File: fftw3.info,  Node: Wisdom Export,  Next: Wisdom Import,  Prev: Wisdom,  Up: Wisdom
-
-4.7.1 Wisdom Export
--------------------
-
-     void fftw_export_wisdom_to_file(FILE *output_file);
-     char *fftw_export_wisdom_to_string(void);
-     void fftw_export_wisdom(void (*write_char)(char c, void *), void *data);
-
-   These functions allow you to export all currently accumulated wisdom
-in a form from which it can be later imported and restored, even during
-a separate run of the program. (*Note Words of Wisdom-Saving Plans::.)
-The current store of wisdom is not affected by calling any of these
-routines.
-
-   `fftw_export_wisdom' exports the wisdom to any output medium, as
-specified by the callback function `write_char'. `write_char' is a
-`putc'-like function that writes the character `c' to some output; its
-second parameter is the `data' pointer passed to `fftw_export_wisdom'.
-For convenience, the following two "wrapper" routines are provided:
-
-   `fftw_export_wisdom_to_file' writes the wisdom to the current
-position in `output_file', which should be open with write permission.
-Upon exit, the file remains open and is positioned at the end of the
-wisdom data.
-
-   `fftw_export_wisdom_to_string' returns a pointer to a
-`NULL'-terminated string holding the wisdom data. This string is
-dynamically allocated, and it is the responsibility of the caller to
-deallocate it with `free' when it is no longer needed.
-
-   All of these routines export the wisdom in the same format, which we
-will not document here except to say that it is LISP-like ASCII text
-that is insensitive to white space.
-
-\1f
-File: fftw3.info,  Node: Wisdom Import,  Next: Forgetting Wisdom,  Prev: Wisdom Export,  Up: Wisdom
-
-4.7.2 Wisdom Import
--------------------
-
-     int fftw_import_system_wisdom(void);
-     int fftw_import_wisdom_from_file(FILE *input_file);
-     int fftw_import_wisdom_from_string(const char *input_string);
-     int fftw_import_wisdom(int (*read_char)(void *), void *data);
-
-   These functions import wisdom into a program from data stored by the
-`fftw_export_wisdom' functions above. (*Note Words of Wisdom-Saving
-Plans::.)  The imported wisdom replaces any wisdom already accumulated
-by the running program.
-
-   `fftw_import_wisdom' imports wisdom from any input medium, as
-specified by the callback function `read_char'. `read_char' is a
-`getc'-like function that returns the next character in the input; its
-parameter is the `data' pointer passed to `fftw_import_wisdom'. If the
-end of the input data is reached (which should never happen for valid
-data), `read_char' should return `EOF' (as defined in `<stdio.h>').
-For convenience, the following two "wrapper" routines are provided:
-
-   `fftw_import_wisdom_from_file' reads wisdom from the current
-position in `input_file', which should be open with read permission.
-Upon exit, the file remains open, but the position of the read pointer
-is unspecified.
-
-   `fftw_import_wisdom_from_string' reads wisdom from the
-`NULL'-terminated string `input_string'.
-
-   `fftw_import_system_wisdom' reads wisdom from an
-implementation-defined standard file (`/etc/fftw/wisdom' on Unix and
-GNU systems).  
-
-   The return value of these import routines is `1' if the wisdom was
-read successfully and `0' otherwise. Note that, in all of these
-functions, any data in the input stream past the end of the wisdom data
-is simply ignored.
-
-\1f
-File: fftw3.info,  Node: Forgetting Wisdom,  Next: Wisdom Utilities,  Prev: Wisdom Import,  Up: Wisdom
-
-4.7.3 Forgetting Wisdom
------------------------
-
-     void fftw_forget_wisdom(void);
-
-   Calling `fftw_forget_wisdom' causes all accumulated `wisdom' to be
-discarded and its associated memory to be freed. (New `wisdom' can
-still be gathered subsequently, however.)
-
-\1f
-File: fftw3.info,  Node: Wisdom Utilities,  Prev: Forgetting Wisdom,  Up: Wisdom
-
-4.7.4 Wisdom Utilities
-----------------------
-
-FFTW includes two standalone utility programs that deal with wisdom.  We
-merely summarize them here, since they come with their own `man' pages
-for Unix and GNU systems (with HTML versions on our web site).
-
-   The first program is `fftw-wisdom' (or `fftwf-wisdom' in single
-precision, etcetera), which can be used to create a wisdom file
-containing plans for any of the transform sizes and types supported by
-FFTW.  It is preferable to create wisdom directly from your executable
-(*note Caveats in Using Wisdom::), but this program is useful for
-creating global wisdom files for `fftw_import_system_wisdom'.  
-
-   The second program is `fftw-wisdom-to-conf', which takes a wisdom
-file as input and produces a "configuration routine" as output.  The
-latter is a C subroutine that you can compile and link into your
-program, replacing a routine of the same name in the FFTW library, that
-determines which parts of FFTW are callable by your program.
-`fftw-wisdom-to-conf' produces a configuration routine that links to
-only those parts of FFTW needed by the saved plans in the wisdom,
-greatly reducing the size of statically linked executables (which should
-only attempt to create plans corresponding to those in the wisdom,
-however).  
-
-\1f
-File: fftw3.info,  Node: What FFTW Really Computes,  Prev: Wisdom,  Up: FFTW Reference
-
-4.8 What FFTW Really Computes
-=============================
-
-In this section, we provide precise mathematical definitions for the
-transforms that FFTW computes.  These transform definitions are fairly
-standard, but some authors follow slightly different conventions for the
-normalization of the transform (the constant factor in front) and the
-sign of the complex exponent.  We begin by presenting the
-one-dimensional (1d) transform definitions, and then give the
-straightforward extension to multi-dimensional transforms.
-
-* Menu:
-
-* The 1d Discrete Fourier Transform (DFT)::
-* The 1d Real-data DFT::
-* 1d Real-even DFTs (DCTs)::
-* 1d Real-odd DFTs (DSTs)::
-* 1d Discrete Hartley Transforms (DHTs)::
-* Multi-dimensional Transforms::
-
-\1f
-File: fftw3.info,  Node: The 1d Discrete Fourier Transform (DFT),  Next: The 1d Real-data DFT,  Prev: What FFTW Really Computes,  Up: What FFTW Really Computes
-
-4.8.1 The 1d Discrete Fourier Transform (DFT)
----------------------------------------------
-
-The forward (`FFTW_FORWARD') discrete Fourier transform (DFT) of a 1d
-complex array X of size n computes an array Y, where:  Y[k] = sum for j = 0 to (n - 1) of X[j] * exp(-2 pi j k sqrt(-1)/n) .
-   The backward (`FFTW_BACKWARD') DFT computes:  Y[k] = sum for j = 0 to (n - 1) of X[j] * exp(2 pi j k sqrt(-1)/n) .
-   FFTW computes an unnormalized transform, in that there is no
-coefficient in front of the summation in the DFT.  In other words,
-applying the forward and then the backward transform will multiply the
-input by n.
-
-   From above, an `FFTW_FORWARD' transform corresponds to a sign of -1
-in the exponent of the DFT.  Note also that we use the standard
-"in-order" output ordering--the k-th output corresponds to the
-frequency k/n (or k/T, where T is your total sampling period).  For
-those who like to think in terms of positive and negative frequencies,
-this means that the positive frequencies are stored in the first half
-of the output and the negative frequencies are stored in backwards
-order in the second half of the output.  (The frequency -k/n is the
-same as the frequency (n-k)/n.)
-
-\1f
-File: fftw3.info,  Node: The 1d Real-data DFT,  Next: 1d Real-even DFTs (DCTs),  Prev: The 1d Discrete Fourier Transform (DFT),  Up: What FFTW Really Computes
-
-4.8.2 The 1d Real-data DFT
---------------------------
-
-The real-input (r2c) DFT in FFTW computes the _forward_ transform Y of
-the size `n' real array X, exactly as defined above, i.e.   Y[k] = sum for j = 0 to (n - 1) of X[j] * exp(-2 pi j k sqrt(-1)/n) .
-   This output array Y can easily be shown to possess the "Hermitian"
-symmetry Y[k] = Y[n-k]*, where we take Y to be periodic so that Y[n] =
-Y[0].
-
-   As a result of this symmetry, half of the output Y is redundant
-(being the complex conjugate of the other half), and so the 1d r2c
-transforms only output elements 0...n/2 of Y (n/2+1 complex numbers),
-where the division by 2 is rounded down.
-
-   Moreover, the Hermitian symmetry implies that Y[0] and, if n is
-even, the Y[n/2] element, are purely real.  So, for the `R2HC' r2r
-transform, these elements are not stored in the halfcomplex output
-format.  
-
-   The c2r and `H2RC' r2r transforms compute the backward DFT of the
-_complex_ array X with Hermitian symmetry, stored in the r2c/`R2HC'
-output formats, respectively, where the backward transform is defined
-exactly as for the complex case:  Y[k] = sum for j = 0 to (n - 1) of X[j] * exp(2 pi j k sqrt(-1)/n) .
-   The outputs `Y' of this transform can easily be seen to be purely
-real, and are stored as an array of real numbers.
-
-   Like FFTW's complex DFT, these transforms are unnormalized.  In other
-words, applying the real-to-complex (forward) and then the
-complex-to-real (backward) transform will multiply the input by n.
-
-\1f
-File: fftw3.info,  Node: 1d Real-even DFTs (DCTs),  Next: 1d Real-odd DFTs (DSTs),  Prev: The 1d Real-data DFT,  Up: What FFTW Really Computes
-
-4.8.3 1d Real-even DFTs (DCTs)
-------------------------------
-
-The Real-even symmetry DFTs in FFTW are exactly equivalent to the
-unnormalized forward (and backward) DFTs as defined above, where the
-input array X of length N is purely real and is also "even" symmetry.
-In this case, the output array is likewise real and even symmetry.  
-
-   For the case of `REDFT00', this even symmetry means that X[j] =
-X[N-j], where we take X to be periodic so that X[N] = X[0].  Because of
-this redundancy, only the first n real numbers are actually stored,
-where N = 2(n-1).
-
-   The proper definition of even symmetry for `REDFT10', `REDFT01', and
-`REDFT11' transforms is somewhat more intricate because of the shifts
-by 1/2 of the input and/or output, although the corresponding boundary
-conditions are given in *note Real even/odd DFTs (cosine/sine
-transforms)::.  Because of the even symmetry, however, the sine terms
-in the DFT all cancel and the remaining cosine terms are written
-explicitly below.  This formulation often leads people to call such a
-transform a "discrete cosine transform" (DCT), although it is really
-just a special case of the DFT.  
-
-   In each of the definitions below, we transform a real array X of
-length n to a real array Y of length n:
-
-REDFT00 (DCT-I)
-...............
-
-An `REDFT00' transform (type-I DCT) in FFTW is defined by: Y[k] = X[0]
-+ (-1)^k X[n-1] + 2 (sum for j = 1 to n-2 of X[j] cos(pi jk /(n-1))).
-Note that this transform is not defined for n=1.  For n=2, the
-summation term above is dropped as you might expect.
-
-REDFT10 (DCT-II)
-................
-
-An `REDFT10' transform (type-II DCT, sometimes called "the" DCT) in
-FFTW is defined by: Y[k] = 2 (sum for j = 0 to n-1 of X[j] cos(pi
-(j+1/2) k / n)).
-
-REDFT01 (DCT-III)
-.................
-
-An `REDFT01' transform (type-III DCT) in FFTW is defined by: Y[k] =
-X[0] + 2 (sum for j = 1 to n-1 of X[j] cos(pi j (k+1/2) / n)).  In the
-case of n=1, this reduces to Y[0] = X[0].  Up to a scale factor (see
-below), this is the inverse of `REDFT10' ("the" DCT), and so the
-`REDFT01' (DCT-III) is sometimes called the "IDCT".  
-
-REDFT11 (DCT-IV)
-................
-
-An `REDFT11' transform (type-IV DCT) in FFTW is defined by: Y[k] = 2
-(sum for j = 0 to n-1 of X[j] cos(pi (j+1/2) (k+1/2) / n)).
-
-Inverses and Normalization
-..........................
-
-These definitions correspond directly to the unnormalized DFTs used
-elsewhere in FFTW (hence the factors of 2 in front of the summations).
-The unnormalized inverse of `REDFT00' is `REDFT00', of `REDFT10' is
-`REDFT01' and vice versa, and of `REDFT11' is `REDFT11'.  Each
-unnormalized inverse results in the original array multiplied by N,
-where N is the _logical_ DFT size.  For `REDFT00', N=2(n-1) (note that
-n=1 is not defined); otherwise, N=2n.  
-
-   In defining the discrete cosine transform, some authors also include
-additional factors of sqrt(2) (or its inverse) multiplying selected
-inputs and/or outputs.  This is a mostly cosmetic change that makes the
-transform orthogonal, but sacrifices the direct equivalence to a
-symmetric DFT.
-
-\1f
-File: fftw3.info,  Node: 1d Real-odd DFTs (DSTs),  Next: 1d Discrete Hartley Transforms (DHTs),  Prev: 1d Real-even DFTs (DCTs),  Up: What FFTW Really Computes
-
-4.8.4 1d Real-odd DFTs (DSTs)
------------------------------
-
-The Real-odd symmetry DFTs in FFTW are exactly equivalent to the
-unnormalized forward (and backward) DFTs as defined above, where the
-input array X of length N is purely real and is also "odd" symmetry.  In
-this case, the output is odd symmetry and purely imaginary.  
-
-   For the case of `RODFT00', this odd symmetry means that X[j] =
--X[N-j], where we take X to be periodic so that X[N] = X[0].  Because
-of this redundancy, only the first n real numbers starting at j=1 are
-actually stored (the j=0 element is zero), where N = 2(n+1).
-
-   The proper definition of odd symmetry for `RODFT10', `RODFT01', and
-`RODFT11' transforms is somewhat more intricate because of the shifts
-by 1/2 of the input and/or output, although the corresponding boundary
-conditions are given in *note Real even/odd DFTs (cosine/sine
-transforms)::.  Because of the odd symmetry, however, the cosine terms
-in the DFT all cancel and the remaining sine terms are written
-explicitly below.  This formulation often leads people to call such a
-transform a "discrete sine transform" (DST), although it is really just
-a special case of the DFT.  
-
-   In each of the definitions below, we transform a real array X of
-length n to a real array Y of length n:
-
-RODFT00 (DST-I)
-...............
-
-An `RODFT00' transform (type-I DST) in FFTW is defined by: Y[k] = 2
-(sum for j = 0 to n-1 of X[j] sin(pi (j+1)(k+1) / (n+1))).
-
-RODFT10 (DST-II)
-................
-
-An `RODFT10' transform (type-II DST) in FFTW is defined by: Y[k] = 2
-(sum for j = 0 to n-1 of X[j] sin(pi (j+1/2) (k+1) / n)).
-
-RODFT01 (DST-III)
-.................
-
-An `RODFT01' transform (type-III DST) in FFTW is defined by: Y[k] =
-(-1)^k X[n-1] + 2 (sum for j = 0 to n-2 of X[j] sin(pi (j+1) (k+1/2) /
-n)).  In the case of n=1, this reduces to Y[0] = X[0].
-
-RODFT11 (DST-IV)
-................
-
-An `RODFT11' transform (type-IV DST) in FFTW is defined by: Y[k] = 2
-(sum for j = 0 to n-1 of X[j] sin(pi (j+1/2) (k+1/2) / n)).
-
-Inverses and Normalization
-..........................
-
-These definitions correspond directly to the unnormalized DFTs used
-elsewhere in FFTW (hence the factors of 2 in front of the summations).
-The unnormalized inverse of `RODFT00' is `RODFT00', of `RODFT10' is
-`RODFT01' and vice versa, and of `RODFT11' is `RODFT11'.  Each
-unnormalized inverse results in the original array multiplied by N,
-where N is the _logical_ DFT size.  For `RODFT00', N=2(n+1); otherwise,
-N=2n.  
-
-   In defining the discrete sine transform, some authors also include
-additional factors of sqrt(2) (or its inverse) multiplying selected
-inputs and/or outputs.  This is a mostly cosmetic change that makes the
-transform orthogonal, but sacrifices the direct equivalence to an
-antisymmetric DFT.
-
-\1f
-File: fftw3.info,  Node: 1d Discrete Hartley Transforms (DHTs),  Next: Multi-dimensional Transforms,  Prev: 1d Real-odd DFTs (DSTs),  Up: What FFTW Really Computes
-
-4.8.5 1d Discrete Hartley Transforms (DHTs)
--------------------------------------------
-
-The discrete Hartley transform (DHT) of a 1d real array X of size n
-computes a real array Y of the same size, where: Y[k] = sum for j = 0 to (n - 1) of X[j] * [cos(2 pi j k / n) + sin(2 pi j k / n)].
-   FFTW computes an unnormalized transform, in that there is no
-coefficient in front of the summation in the DHT.  In other words,
-applying the transform twice (the DHT is its own inverse) will multiply
-the input by n.
-
-\1f
-File: fftw3.info,  Node: Multi-dimensional Transforms,  Prev: 1d Discrete Hartley Transforms (DHTs),  Up: What FFTW Really Computes
-
-4.8.6 Multi-dimensional Transforms
-----------------------------------
-
-The multi-dimensional transforms of FFTW, in general, compute simply the
-separable product of the given 1d transform along each dimension of the
-array.  Since each of these transforms is unnormalized, computing the
-forward followed by the backward/inverse multi-dimensional transform
-will result in the original array scaled by the product of the
-normalization factors for each dimension (e.g. the product of the
-dimension sizes, for a multi-dimensional DFT).
-
-   The definition of FFTW's multi-dimensional DFT of real data (r2c)
-deserves special attention.  In this case, we logically compute the full
-multi-dimensional DFT of the input data; since the input data are purely
-real, the output data have the Hermitian symmetry and therefore only one
-non-redundant half need be stored.  More specifically, for an n[0] x
-n[1] x n[2] x ... x n[d-1]  multi-dimensional real-input DFT, the full
-(logical) complex output array Y[k[0], k[1], ..., k[d-1]] has the
-symmetry: Y[k[0], k[1], ..., k[d-1]] = Y[n[0] - k[0], n[1] - k[1], ...,
-n[d-1] - k[d-1]]* (where each dimension is periodic).  Because of this
-symmetry, we only store the k[d-1] = 0...n[d-1]/2 elements of the
-_last_ dimension (division by 2 is rounded down).  (We could instead
-have cut any other dimension in half, but the last dimension proved
-computationally convenient.)  This results in the peculiar array format
-described in more detail by *note Real-data DFT Array Format::.
-
-   The multi-dimensional c2r transform is simply the unnormalized
-inverse of the r2c transform.  i.e. it is the same as FFTW's complex
-backward multi-dimensional DFT, operating on a Hermitian input array in
-the peculiar format mentioned above and outputting a real array (since
-the DFT output is purely real).
-
-   We should remind the user that the separable product of 1d transforms
-along each dimension, as computed by FFTW, is not always the same thing
-as the usual multi-dimensional transform.  A multi-dimensional `R2HC'
-(or `HC2R') transform is not identical to the multi-dimensional DFT,
-requiring some post-processing to combine the requisite real and
-imaginary parts, as was described in *note The Halfcomplex-format
-DFT::.  Likewise, FFTW's multidimensional `FFTW_DHT' r2r transform is
-not the same thing as the logical multi-dimensional discrete Hartley
-transform defined in the literature, as discussed in *note The Discrete
-Hartley Transform::.
-
-\1f
-File: fftw3.info,  Node: Multi-threaded FFTW,  Next: FFTW on the Cell Processor,  Prev: FFTW Reference,  Up: Top
-
-5 Multi-threaded FFTW
-*********************
-
-In this chapter we document the parallel FFTW routines for
-shared-memory parallel hardware.  These routines, which support
-parallel one- and multi-dimensional transforms of both real and complex
-data, are the easiest way to take advantage of multiple processors with
-FFTW.  They work just like the corresponding uniprocessor transform
-routines, except that you have an extra initialization routine to call,
-and there is a routine to set the number of threads to employ.  Any
-program that uses the uniprocessor FFTW can therefore be trivially
-modified to use the multi-threaded FFTW.
-
-   A shared-memory machine is one in which all CPUs can directly access
-the same main memory, and such machines are now common due to the
-ubiquity of multi-core CPUs.  FFTW's multi-threading support allows you
-to utilize these additional CPUs transparently from a single program.
-However, this does not necessarily translate into performance
-gains--when multiple threads/CPUs are employed, there is an overhead
-required for synchronization that may outweigh the computatational
-parallelism.  Therefore, you can only benefit from threads if your
-problem is sufficiently large.  
-
-* Menu:
-
-* Installation and Supported Hardware/Software::
-* Usage of Multi-threaded FFTW::
-* How Many Threads to Use?::
-* Thread safety::
-
-\1f
-File: fftw3.info,  Node: Installation and Supported Hardware/Software,  Next: Usage of Multi-threaded FFTW,  Prev: Multi-threaded FFTW,  Up: Multi-threaded FFTW
-
-5.1 Installation and Supported Hardware/Software
-================================================
-
-All of the FFTW threads code is located in the `threads' subdirectory
-of the FFTW package.  On Unix systems, the FFTW threads libraries and
-header files can be automatically configured, compiled, and installed
-along with the uniprocessor FFTW libraries simply by including
-`--enable-threads' in the flags to the `configure' script (*note
-Installation on Unix::).  
-
-   The threads routines require your operating system to have some sort
-of shared-memory threads support.  Specifically, the FFTW threads
-package works with POSIX threads (available on most Unix variants, from
-GNU/Linux to MacOS X) and Win32 threads.  We also support using OpenMP
-(http://www.openmp.org), enabled by using `--enable-openmp' (_instead_
-of `--enable-threads').  (This may be useful if you are employing that
-sort of directive in your own code, in order to minimize conflicts.)
-If you have a shared-memory machine that uses a different threads API,
-it should be a simple matter of programming to include support for it;
-see the file `threads/threads.c' for more detail.
-
-   Ideally, of course, you should also have multiple processors in
-order to get any benefit from the threaded transforms.
-
-\1f
-File: fftw3.info,  Node: Usage of Multi-threaded FFTW,  Next: How Many Threads to Use?,  Prev: Installation and Supported Hardware/Software,  Up: Multi-threaded FFTW
-
-5.2 Usage of Multi-threaded FFTW
-================================
-
-Here, it is assumed that the reader is already familiar with the usage
-of the uniprocessor FFTW routines, described elsewhere in this manual.
-We only describe what one has to change in order to use the
-multi-threaded routines.
-
-   First, programs using the parallel complex transforms should be
-linked with `-lfftw3_threads -lfftw3 -lm' on Unix. You will also need
-to link with whatever library is responsible for threads on your system
-(e.g. `-lpthread' on GNU/Linux).  
-
-   Second, before calling _any_ FFTW routines, you should call the
-function:
-
-     int fftw_init_threads(void);
-   
-   This function, which need only be called once, performs any one-time
-initialization required to use threads on your system.  It returns zero
-if there was some error (which should not happen under normal
-circumstances) and a non-zero value otherwise.
-
-   Third, before creating a plan that you want to parallelize, you
-should call:
-
-     void fftw_plan_with_nthreads(int nthreads);
-   
-   The `nthreads' argument indicates the number of threads you want
-FFTW to use (or actually, the maximum number).  All plans subsequently
-created with any planner routine will use that many threads.  You can
-call `fftw_plan_with_nthreads', create some plans, call
-`fftw_plan_with_nthreads' again with a different argument, and create
-some more plans for a new number of threads.  Plans already created
-before a call to `fftw_plan_with_nthreads' are unaffected.  If you pass
-an `nthreads' argument of `1' (the default), threads are disabled for
-subsequent plans.
-
-   Given a plan, you then execute it as usual with
-`fftw_execute(plan)', and the execution will use the number of threads
-specified when the plan was created.  When done, you destroy it as
-usual with `fftw_destroy_plan'.
-
-   There is one additional routine: if you want to get rid of all memory
-and other resources allocated internally by FFTW, you can call:
-
-     void fftw_cleanup_threads(void);
-   
-   which is much like the `fftw_cleanup()' function except that it also
-gets rid of threads-related data.  You must _not_ execute any
-previously created plans after calling this function.
-
-   We should also mention one other restriction: if you save wisdom
-from a program using the multi-threaded FFTW, that wisdom _cannot be
-used_ by a program using only the single-threaded FFTW (i.e. not calling
-`fftw_init_threads').  *Note Words of Wisdom-Saving Plans::.
-
-\1f
-File: fftw3.info,  Node: How Many Threads to Use?,  Next: Thread safety,  Prev: Usage of Multi-threaded FFTW,  Up: Multi-threaded FFTW
-
-5.3 How Many Threads to Use?
-============================
-
-There is a fair amount of overhead involved in synchronizing threads,
-so the optimal number of threads to use depends upon the size of the
-transform as well as on the number of processors you have.
-
-   As a general rule, you don't want to use more threads than you have
-processors.  (Using more threads will work, but there will be extra
-overhead with no benefit.)  In fact, if the problem size is too small,
-you may want to use fewer threads than you have processors.
-
-   You will have to experiment with your system to see what level of
-parallelization is best for your problem size.  Typically, the problem
-will have to involve at least a few thousand data points before threads
-become beneficial.  If you plan with `FFTW_PATIENT', it will
-automatically disable threads for sizes that don't benefit from
-parallelization.  
-
-\1f
-File: fftw3.info,  Node: Thread safety,  Prev: How Many Threads to Use?,  Up: Multi-threaded FFTW
-
-5.4 Thread safety
-=================
-
-Users writing multi-threaded programs must concern themselves with the
-"thread safety" of the libraries they use--that is, whether it is safe
-to call routines in parallel from multiple threads.  FFTW can be used
-in such an environment, but some care must be taken because the planner
-routines share data (e.g. wisdom and trigonometric tables) between
-calls and plans.
-
-   The upshot is that the only thread-safe (re-entrant) routine in FFTW
-is `fftw_execute' (and the new-array variants thereof).  All other
-routines (e.g. the planner) should only be called from one thread at a
-time.  So, for example, you can wrap a semaphore lock around any calls
-to the planner; even more simply, you can just create all of your plans
-from one thread.  We do not think this should be an important
-restriction (FFTW is designed for the situation where the only
-performance-sensitive code is the actual execution of the transform),
-and the benefits of shared data between plans are great.
-
-   Note also that, since the plan is not modified by `fftw_execute', it
-is safe to execute the _same plan_ in parallel by multiple threads.
-However, since a given plan operates by default on a fixed array, you
-need to use one of the new-array execute functions (*note New-array
-Execute Functions::) so that different threads compute the transform of
-different data.
-
-   (Users should note that these comments only apply to programs using
-shared-memory threads.  Parallelism using MPI or forked processes
-involves a separate address-space and global variables for each process,
-and is not susceptible to problems of this sort.)
-
-\1f
-File: fftw3.info,  Node: FFTW on the Cell Processor,  Next: Calling FFTW from Fortran,  Prev: Multi-threaded FFTW,  Up: Top
-
-6 FFTW on the Cell Processor
-****************************
-
-Starting with version 3.2, FFTW contains specific support for the Cell
-Broadband Engine ("Cell") processor, graciously donated by the IBM
-Austin Research Laboratory.
-
-   Cell consists of one PowerPC core ("PPE") and of a number of
-Synergistic Processing Elements ("SPE") to which the PPE can delegate
-computation.  The IBM QS20 Cell blade offers 8 SPEs per Cell chip.  The
-Sony Playstation 3 contains 6 useable SPEs.
-
-   Currently, FFTW fully utilizes the SPEs for one- and
-multi-dimensional complex FFTs of sizes that can be factored into small
-primes, both in single and double precision.  Transforms of real data
-use SPEs only partially at this time.  If FFTW cannot use the SPEs, it
-falls back to a slower computation on the PPE.
-
-   FFTW is meant to use the SPEs transparently without user
-intervention.  However, certain caveats apply, which are discussed
-later in this document.
-
-* Menu:
-
-* Cell Installation::
-* Cell Caveats::
-* FFTW Accuracy on Cell::
-
-\1f
-File: fftw3.info,  Node: Cell Installation,  Next: Cell Caveats,  Prev: FFTW on the Cell Processor,  Up: FFTW on the Cell Processor
-
-6.1 Cell Installation
-=====================
-
-All of the FFTW Cell code is located in the `cell' subdirectory of the
-FFTW package.  On Unix systems, the FFTW Cell support is automatically
-configured, compiled, and included in the uniprocessor FFTW libraries
-simply by including `--enable-cell' in the flags to the `configure'
-script (*note Installation on Unix::).  
-
-   Both double precision (the default) and single precision are
-supported on the Cell; for the latter, configure with `--enable-cell
---enable-single'.
-
-   In addition, the PPE supports the Altivec (or VMX) instruction set in
-single precision.  (Altivec is Apple/Freescale terminology, VMX is IBM
-terminology for the same thing.)  You can enable support for Altivec
-with the `--enable-altivec' flag (single precision only).
-
-   The software compiles with the Cell SDK 2.0, and probably with
-earlier ones as well.
-
-\1f
-File: fftw3.info,  Node: Cell Caveats,  Next: FFTW Accuracy on Cell,  Prev: Cell Installation,  Up: FFTW on the Cell Processor
-
-6.2 Cell Caveats
-================
-
-   * The FFTW benchmark program allocates memory using malloc() or
-     equivalent library calls, reflecting the common usage of the FFTW
-     library.  However, you can sometimes improve performance
-     significantly by allocating memory in system-specific large TLB
-     pages.  E.g., we have seen 39 GFLOPS/s for a 256 x 256 x 256
-     problem using large pages, whereas the speed is about 25 GFLOPS/s
-     with normal pages.  YMMV.
-
-   * FFTW hoards all available SPEs for itself.  You can optionally
-     choose a different number of SPEs by calling the undocumented
-     function `fftw_cell_set_nspe(n)', where `n' is the number of
-     desired SPEs.  Expect this interface to go away once we figure out
-     how to make FFTW play nicely with other Cell software.
-
-     In particular, if you try to link both the single and double
-     precision of FFTW in the same program (which you can do), they
-     will both try to grab all SPEs and the second one will hang.
-
-   * The SPEs demand that data be stored in contiguous arrays aligned at
-     16-byte boundaries.  If you instruct FFTW to operate on
-     noncontiguous or nonaligned data, the SPEs will not be used,
-     resulting in slow execution.  *Note Data Alignment::.
-
-   * The `FFTW_ESTIMATE' mode may produce seriously suboptimal plans,
-     and it becomes particularly confused if you enable both the SPEs
-     and Altivec.  If you care about performance, please use
-     `FFTW_MEASURE' or `FFTW_PATIENT' until we figure out a more
-     reliable performance model.
-
-
-\1f
-File: fftw3.info,  Node: FFTW Accuracy on Cell,  Prev: Cell Caveats,  Up: FFTW on the Cell Processor
-
-6.3 FFTW Accuracy on Cell
-=========================
-
-The SPEs are fully IEEE-754 compliant in double precision.  In single
-precision, they only implement round-towards-zero as opposed to the
-standard round-to-even mode.  (The PPE is fully IEEE-754 compliant like
-all other PowerPC implementations.)  Because of the rounding mode, FFTW
-is less accurate when running on the SPEs than on the PPE.  The
-accuracy loss is hard to quantify in general, but as a rough guideline,
-the L2 norm of the relative roundoff error for random inputs is 4 to 8
-times larger than the corresponding calculation in round-to-even
-arithmetic.  In other words, expect to lose 2 to 3 bits of accuracy.
-
-   FFTW currently does not use any algorithm that degrades accuracy to
-gain performance on the SPE.  One implication of this choice is that
-large 1D transforms run slower than they would if we were willing to
-sacrifice another bit or so of accuracy.
-
-\1f
-File: fftw3.info,  Node: Calling FFTW from Fortran,  Next: Upgrading from FFTW version 2,  Prev: FFTW on the Cell Processor,  Up: Top
-
-7 Calling FFTW from Fortran
-***************************
-
-This chapter describes the Fortran-callable interface to FFTW, which
-differs from the C interface only in the prefix (`dfftw_' instead of
-`fftw_'), and a few other minor details.  The Fortran interface is
-included in the FFTW libraries by default, unless a Fortran compiler
-isn't found on your system or `--disable-fortran' is included in the
-`configure' flags.  We assume here that the reader is already familiar
-with the usage of FFTW in C, as described elsewhere in this manual.
-
-* Menu:
-
-* Fortran-interface routines::
-* FFTW Constants in Fortran::
-* FFTW Execution in Fortran::
-* Fortran Examples::
-* Wisdom of Fortran?::
-
-\1f
-File: fftw3.info,  Node: Fortran-interface routines,  Next: FFTW Constants in Fortran,  Prev: Calling FFTW from Fortran,  Up: Calling FFTW from Fortran
-
-7.1 Fortran-interface routines
-==============================
-
-Nearly all of the FFTW functions have Fortran-callable equivalents.  The
-name of the Fortran routine is the same as that of the corresponding C
-routine, but with the `fftw_' prefix replaced by `dfftw_'.  (The single
-and long-double precision versions use `sfftw_' and `lfftw_',
-respectively, instead of `fftwf_' and `fftwl_'.)(1)
-
-   For the most part, all of the arguments to the functions are the
-same, with the following exceptions:
-
-   * `plan' variables (what would be of type `fftw_plan' in C), must be
-     declared as a type that is at least as big as a pointer (address)
-     on your machine.  We recommend using `integer*8'.  
-
-   * Any function that returns a value (e.g. `fftw_plan_dft') is
-     converted into a _subroutine_.  The return value is converted into
-     an additional _first_ parameter of this subroutine.(2)
-
-   * The Fortran routines expect multi-dimensional arrays to be in
-     _column-major_ order, which is the ordinary format of Fortran
-     arrays (*note Multi-dimensional Array Format::).  They do this
-     transparently and costlessly simply by reversing the order of the
-     dimensions passed to FFTW, but this has one important consequence
-     for multi-dimensional real-complex transforms, discussed below.
-
-   * Wisdom import and export is somewhat more tricky because one cannot
-     easily pass files or strings between C and Fortran; see *note
-     Wisdom of Fortran?::.
-
-   * Fortran cannot use the `fftw_malloc' dynamic-allocation routine.
-     If you want to exploit the SIMD FFTW (*note Data Alignment::),
-     you'll need to figure out some other way to ensure that your
-     arrays are at least 16-byte aligned.
-
-   * Since Fortran 77 does not have data structures, the `fftw_iodim'
-     structure from the guru interface (*note Guru vector and transform
-     sizes::) must be split into separate arguments.  In particular, any
-     `fftw_iodim' array arguments in the C guru interface become three
-     integer array arguments (`n', `is', and `os') in the Fortran guru
-     interface, all of whose lengths should be equal to the
-     corresponding `rank' argument.
-
-   * The guru planner interface in Fortran does _not_ do any automatic
-     translation between column-major and row-major; you are responsible
-     for setting the strides etcetera to correspond to your Fortran
-     arrays.  However, as a slight bug that we are preserving for
-     backwards compatibility, the `plan_guru_r2r' in Fortran _does_
-     reverse the order of its `kind' array parameter, so the `kind'
-     array of that routine should be in the reverse of the order of the
-     iodim arrays (see above).
-
-
-   In general, you should take care to use Fortran data types that
-correspond to (i.e. are the same size as) the C types used by FFTW.  If
-your C and Fortran compilers are made by the same vendor, the
-correspondence is usually straightforward (i.e. `integer' corresponds
-to `int', `real' corresponds to `float', etcetera).  The native Fortran
-double/single-precision complex type should be compatible with
-`fftw_complex'/`fftwf_complex'.  Such simple correspondences are
-assumed in the examples below.  
-
-   ---------- Footnotes ----------
-
-   (1) Technically, Fortran 77 identifiers are not allowed to have more
-than 6 characters, nor may they contain underscores.  Any compiler that
-enforces this limitation doesn't deserve to link to FFTW.
-
-   (2) The reason for this is that some Fortran implementations seem to
-have trouble with C function return values, and vice versa.
-
-\1f
-File: fftw3.info,  Node: FFTW Constants in Fortran,  Next: FFTW Execution in Fortran,  Prev: Fortran-interface routines,  Up: Calling FFTW from Fortran
-
-7.2 FFTW Constants in Fortran
-=============================
-
-When creating plans in FFTW, a number of constants are used to specify
-options, such as `FFTW_MEASURE' or `FFTW_ESTIMATE'.  The same constants
-must be used with the wrapper routines, but of course the C header
-files where the constants are defined can't be incorporated directly
-into Fortran code.
-
-   Instead, we have placed Fortran equivalents of the FFTW constant
-definitions in the file `fftw3.f', which can be found in the same
-directory as `fftw3.h'.  If your Fortran compiler supports a
-preprocessor of some sort, you should be able to `include' or
-`#include' this file; otherwise, you can paste it directly into your
-code.
-
-   In C, you combine different flags (like `FFTW_PRESERVE_INPUT' and
-`FFTW_MEASURE') using the ``|'' operator; in Fortran you should just
-use ``+''.  (Take care not to add in the same flag more than once,
-though.)
-
-\1f
-File: fftw3.info,  Node: FFTW Execution in Fortran,  Next: Fortran Examples,  Prev: FFTW Constants in Fortran,  Up: Calling FFTW from Fortran
-
-7.3 FFTW Execution in Fortran
-=============================
-
-In C, in order to use a plan, one normally calls `fftw_execute', which
-executes the plan to perform the transform on the input/output arrays
-passed when the plan was created (*note Using Plans::).  The
-corresponding subroutine call in Fortran is:
-             call dfftw_execute(plan)
-   
-   However, we have had reports that this causes problems with some
-recent optimizing Fortran compilers.  The problem is, because the
-input/output arrays are not passed as explicit arguments to
-`dfftw_execute', the semantics of Fortran (unlike C) allow the compiler
-to assume that the input/output arrays are not changed by
-`dfftw_execute'.  As a consequence, certain compilers end up optimizing
-out or repositioning the call to `dfftw_execute', assuming incorrectly
-that it does nothing.
-
-   There are various workarounds to this, but the safest and simplest
-thing is to not use `dfftw_execute' in Fortran.  Instead, use the
-functions described in *note New-array Execute Functions::, which take
-the input/output arrays as explicit arguments.  For example, if the
-plan is for a complex-data DFT and was created for the arrays `in' and
-`out', you would do:
-             call dfftw_execute_dft(plan, in, out)
-   
-   There are a few things to be careful of, however:
-
-   * You must use the correct type of execute function, matching the way
-     the plan was created.  Complex DFT plans should use
-     `dfftw_execute_dft', Real-input (r2c) DFT plans should use use
-     `dfftw_execute_dft_r2c', and real-output (c2r) DFT plans should
-     use `dfftw_execute_dft_c2r'.  The various r2r plans should use
-     `dfftw_execute_r2r'.
-
-   * You should normally pass the same input/output arrays that were
-     used when creating the plan.  This is always safe.
-
-   * _If_ you pass _different_ input/output arrays compared to those
-     used when creating the plan, you must abide by all the
-     restrictions of the new-array execute functions (*note New-array
-     Execute Functions::).  The most difficult of these, in Fortran, is
-     the requirement that the new arrays have the same alignment as the
-     original arrays, because there seems to be no way in Fortran to
-     obtain guaranteed-aligned arrays (analogous to `fftw_malloc' in
-     C).  You can, of course, use the `FFTW_UNALIGNED' flag when
-     creating the plan, in which case the plan does not depend on the
-     alignment, but this may sacrifice substantial performance on
-     architectures (like x86) with SIMD instructions (*note SIMD
-     alignment and fftw_malloc::).  
-
-
-\1f
-File: fftw3.info,  Node: Fortran Examples,  Next: Wisdom of Fortran?,  Prev: FFTW Execution in Fortran,  Up: Calling FFTW from Fortran
-
-7.4 Fortran Examples
-====================
-
-In C, you might have something like the following to transform a
-one-dimensional complex array:
-
-             fftw_complex in[N], out[N];
-             fftw_plan plan;
-
-             plan = fftw_plan_dft_1d(N,in,out,FFTW_FORWARD,FFTW_ESTIMATE);
-             fftw_execute(plan);
-             fftw_destroy_plan(plan);
-
-   In Fortran, you would use the following to accomplish the same thing:
-
-             double complex in, out
-             dimension in(N), out(N)
-             integer*8 plan
-
-             call dfftw_plan_dft_1d(plan,N,in,out,FFTW_FORWARD,FFTW_ESTIMATE)
-             call dfftw_execute_dft(plan, in, out)
-             call dfftw_destroy_plan(plan)
-   
-   Notice how all routines are called as Fortran subroutines, and the
-plan is returned via the first argument to `dfftw_plan_dft_1d'.  Notice
-also that we changed `fftw_execute' to `dfftw_execute_dft' (*note FFTW
-Execution in Fortran::).  To do the same thing, but using 8 threads in
-parallel (*note Multi-threaded FFTW::), you would simply prefix these
-calls with:
-
-             integer iret
-             call dfftw_init_threads(iret)
-             call dfftw_plan_with_nthreads(8)
-   
-   (You might want to check the value of `iret': if it is zero, it
-indicates an unlikely error during thread initialization.)
-
-   To transform a three-dimensional array in-place with C, you might do:
-
-             fftw_complex arr[L][M][N];
-             fftw_plan plan;
-
-             plan = fftw_plan_dft_3d(L,M,N, arr,arr,
-                                     FFTW_FORWARD, FFTW_ESTIMATE);
-             fftw_execute(plan);
-             fftw_destroy_plan(plan);
-
-   In Fortran, you would use this instead:
-
-             double complex arr
-             dimension arr(L,M,N)
-             integer*8 plan
-
-             call dfftw_plan_dft_3d(plan, L,M,N, arr,arr,
-            &                       FFTW_FORWARD, FFTW_ESTIMATE)
-             call dfftw_execute_dft(plan, arr, arr)
-             call dfftw_destroy_plan(plan)
-   
-   Note that we pass the array dimensions in the "natural" order in
-both C and Fortran.
-
-   To transform a one-dimensional real array in Fortran, you might do:
-
-             double precision in
-             dimension in(N)
-             double complex out
-             dimension out(N/2 + 1)
-             integer*8 plan
-
-             call dfftw_plan_dft_r2c_1d(plan,N,in,out,FFTW_ESTIMATE)
-             call dfftw_execute_dft_r2c(plan, in, out)
-             call dfftw_destroy_plan(plan)
-   
-   To transform a two-dimensional real array, out of place, you might
-use the following:
-
-             double precision in
-             dimension in(M,N)
-             double complex out
-             dimension out(M/2 + 1, N)
-             integer*8 plan
-
-             call dfftw_plan_dft_r2c_2d(plan,M,N,in,out,FFTW_ESTIMATE)
-             call dfftw_execute_dft_r2c(plan, in, out)
-             call dfftw_destroy_plan(plan)
-   
-   *Important:* Notice that it is the _first_ dimension of the complex
-output array that is cut in half in Fortran, rather than the last
-dimension as in C.  This is a consequence of the interface routines
-reversing the order of the array dimensions passed to FFTW so that the
-Fortran program can use its ordinary column-major order.  
-
-\1f
-File: fftw3.info,  Node: Wisdom of Fortran?,  Prev: Fortran Examples,  Up: Calling FFTW from Fortran
-
-7.5 Wisdom of Fortran?
-======================
-
-In this section, we discuss how one can import/export FFTW wisdom
-(saved plans) to/from a Fortran program; we assume that the reader is
-already familiar with wisdom, as described in *note Words of
-Wisdom-Saving Plans::.
-
-   The basic problem is that is difficult to (portably) pass files and
-strings between Fortran and C, so we cannot provide a direct Fortran
-equivalent to the `fftw_export_wisdom_to_file', etcetera, functions.
-Fortran interfaces _are_ provided for the functions that do not take
-file/string arguments, however: `dfftw_import_system_wisdom',
-`dfftw_import_wisdom', `dfftw_export_wisdom', and `dfftw_forget_wisdom'.  
-
-   So, for example, to import the system-wide wisdom, you would do:
-
-             integer isuccess
-             call dfftw_import_system_wisdom(isuccess)
-
-   As usual, the C return value is turned into a first parameter;
-`isuccess' is non-zero on success and zero on failure (e.g. if there is
-no system wisdom installed).
-
-   If you want to import/export wisdom from/to an arbitrary file or
-elsewhere, you can employ the generic `dfftw_import_wisdom' and
-`dfftw_export_wisdom' functions, for which you must supply a subroutine
-to read/write one character at a time.  The FFTW package contains an
-example file `doc/f77_wisdom.f' demonstrating how to implement
-`import_wisdom_from_file' and `export_wisdom_to_file' subroutines in
-this way.  (These routines cannot be compiled into the FFTW library
-itself, lest all FFTW-using programs be required to link with the
-Fortran I/O library.)
-
-\1f
-File: fftw3.info,  Node: Upgrading from FFTW version 2,  Next: Installation and Customization,  Prev: Calling FFTW from Fortran,  Up: Top
-
-8 Upgrading from FFTW version 2
-*******************************
-
-In this chapter, we outline the process for updating codes designed for
-the older FFTW 2 interface to work with FFTW 3.  The interface for FFTW
-3 is not backwards-compatible with the interface for FFTW 2 and earlier
-versions; codes written to use those versions will fail to link with
-FFTW 3.  Nor is it possible to write "compatibility wrappers" to bridge
-the gap (at least not efficiently), because FFTW 3 has different
-semantics from previous versions.  However, upgrading should be a
-straightforward process because the data formats are identical and the
-overall style of planning/execution is essentially the same.
-
-   Unlike FFTW 2, there are no separate header files for real and
-complex transforms (or even for different precisions) in FFTW 3; all
-interfaces are defined in the `<fftw3.h>' header file.
-
-Numeric Types
-=============
-
-The main difference in data types is that `fftw_complex' in FFTW 2 was
-defined as a `struct' with macros `c_re' and `c_im' for accessing the
-real/imaginary parts.  (This is binary-compatible with FFTW 3 on any
-machine except perhaps for some older Crays in single precision.)  The
-equivalent macros for FFTW 3 are:
-
-     #define c_re(c) ((c)[0])
-     #define c_im(c) ((c)[1])
-
-   This does not work if you are using the C99 complex type, however,
-unless you insert a `double*' typecast into the above macros (*note
-Complex numbers::).
-
-   Also, FFTW 2 had an `fftw_real' typedef that was an alias for
-`double' (in double precision).  In FFTW 3 you should just use `double'
-(or whatever precision you are employing).
-
-Plans
-=====
-
-The major difference between FFTW 2 and FFTW 3 is in the
-planning/execution division of labor.  In FFTW 2, plans were found for a
-given transform size and type, and then could be applied to _any_
-arrays and for _any_ multiplicity/stride parameters.  In FFTW 3, you
-specify the particular arrays, stride parameters, etcetera when
-creating the plan, and the plan is then executed for _those_ arrays
-(unless the guru interface is used) and _those_ parameters _only_.
-(FFTW 2 had "specific planner" routines that planned for a particular
-array and stride, but the plan could still be used for other arrays and
-strides.)  That is, much of the information that was formerly specified
-at execution time is now specified at planning time.
-
-   Like FFTW 2's specific planner routines, the FFTW 3 planner
-overwrites the input/output arrays unless you use `FFTW_ESTIMATE'.
-
-   FFTW 2 had separate data types `fftw_plan', `fftwnd_plan',
-`rfftw_plan', and `rfftwnd_plan' for complex and real one- and
-multi-dimensional transforms, and each type had its own `destroy'
-function.  In FFTW 3, all plans are of type `fftw_plan' and all are
-destroyed by `fftw_destroy_plan(plan)'.
-
-   Where you formerly used `fftw_create_plan' and `fftw_one' to plan
-and compute a single 1d transform, you would now use `fftw_plan_dft_1d'
-to plan the transform.  If you used the generic `fftw' function to
-execute the transform with multiplicity (`howmany') and stride
-parameters, you would now use the advanced interface
-`fftw_plan_many_dft' to specify those parameters.  The plans are now
-executed with `fftw_execute(plan)', which takes all of its parameters
-(including the input/output arrays) from the plan.
-
-   In-place transforms no longer interpret their output argument as
-scratch space, nor is there an `FFTW_IN_PLACE' flag.  You simply pass
-the same pointer for both the input and output arguments.  (Previously,
-the output `ostride' and `odist' parameters were ignored for in-place
-transforms; now, if they are specified via the advanced interface, they
-are significant even in the in-place case, although they should
-normally equal the corresponding input parameters.)
-
-   The `FFTW_ESTIMATE' and `FFTW_MEASURE' flags have the same meaning
-as before, although the planning time will differ.  You may also
-consider using `FFTW_PATIENT', which is like `FFTW_MEASURE' except that
-it takes more time in order to consider a wider variety of algorithms.
-
-   For multi-dimensional complex DFTs, instead of `fftwnd_create_plan'
-(or `fftw2d_create_plan' or `fftw3d_create_plan'), followed by
-`fftwnd_one', you would use `fftw_plan_dft' (or `fftw_plan_dft_2d' or
-`fftw_plan_dft_3d').  followed by `fftw_execute'.  If you used `fftwnd'
-to to specify strides etcetera, you would instead specify these via
-`fftw_plan_many_dft'.
-
-   The analogues to `rfftw_create_plan' and `rfftw_one' with
-`FFTW_REAL_TO_COMPLEX' or `FFTW_COMPLEX_TO_REAL' directions are
-`fftw_plan_r2r_1d' with kind `FFTW_R2HC' or `FFTW_HC2R', followed by
-`fftw_execute'.  The stride etcetera arguments of `rfftw' are now in
-`fftw_plan_many_r2r'.
-
-   Instead of `rfftwnd_create_plan' (or `rfftw2d_create_plan' or
-`rfftw3d_create_plan') followed by `rfftwnd_one_real_to_complex' or
-`rfftwnd_one_complex_to_real', you now use `fftw_plan_dft_r2c' (or
-`fftw_plan_dft_r2c_2d' or `fftw_plan_dft_r2c_3d') or
-`fftw_plan_dft_c2r' (or `fftw_plan_dft_c2r_2d' or
-`fftw_plan_dft_c2r_3d'), respectively, followed by `fftw_execute'.  As
-usual, the strides etcetera of `rfftwnd_real_to_complex' or
-`rfftwnd_complex_to_real' are no specified in the advanced planner
-routines, `fftw_plan_many_dft_r2c' or `fftw_plan_many_dft_c2r'.
-
-Wisdom
-======
-
-In FFTW 2, you had to supply the `FFTW_USE_WISDOM' flag in order to use
-wisdom; in FFTW 3, wisdom is always used.  (You could simulate the FFTW
-2 wisdom-less behavior by calling `fftw_forget_wisdom' after every
-planner call.)
-
-   The FFTW 3 wisdom import/export routines are almost the same as
-before (although the storage format is entirely different).  There is
-one significant difference, however.  In FFTW 2, the import routines
-would never read past the end of the wisdom, so you could store extra
-data beyond the wisdom in the same file, for example.  In FFTW 3, the
-file-import routine may read up to a few hundred bytes past the end of
-the wisdom, so you cannot store other data just beyond it.(1)
-
-   Wisdom has been enhanced by additional humility in FFTW 3: whereas
-FFTW 2 would re-use wisdom for a given transform size regardless of the
-stride etc., in FFTW 3 wisdom is only used with the strides etc. for
-which it was created.  Unfortunately, this means FFTW 3 has to create
-new plans from scratch more often than FFTW 2 (in FFTW 2, planning e.g.
-one transform of size 1024 also created wisdom for all smaller powers
-of 2, but this no longer occurs).
-
-   FFTW 3 also has the new routine `fftw_import_system_wisdom' to
-import wisdom from a standard system-wide location.
-
-Memory allocation
-=================
-
-In FFTW 3, we recommend allocating your arrays with `fftw_malloc' and
-deallocating them with `fftw_free'; this is not required, but allows
-optimal performance when SIMD acceleration is used.  (Those two
-functions actually existed in FFTW 2, and worked the same way, but were
-not documented.)
-
-   In FFTW 2, there were `fftw_malloc_hook' and `fftw_free_hook'
-functions that allowed the user to replace FFTW's memory-allocation
-routines (e.g. to implement different error-handling, since by default
-FFTW prints an error message and calls `exit' to abort the program if
-`malloc' returns `NULL').  These hooks are not supported in FFTW 3;
-those few users who require this functionality can just directly modify
-the memory-allocation routines in FFTW (they are defined in
-`kernel/alloc.c').
-
-Fortran interface
-=================
-
-In FFTW 2, the subroutine names were obtained by replacing `fftw_' with
-`fftw_f77'; in FFTW 3, you replace `fftw_' with `dfftw_' (or `sfftw_'
-or `lfftw_', depending upon the precision).
-
-   In FFTW 3, we have begun recommending that you always declare the
-type used to store plans as `integer*8'.  (Too many people didn't notice
-our instruction to switch from `integer' to `integer*8' for 64-bit
-machines.)
-
-   In FFTW 3, we provide a `fftw3.f' "header file" to include in your
-code (and which is officially installed on Unix systems).  (In FFTW 2,
-we supplied a `fftw_f77.i' file, but it was not installed.)
-
-   Otherwise, the C-Fortran interface relationship is much the same as
-it was before (e.g. return values become initial parameters, and
-multi-dimensional arrays are in column-major order).  Unlike FFTW 2, we
-do provide some support for wisdom import/export in Fortran (*note
-Wisdom of Fortran?::).
-
-Threads
-=======
-
-Like FFTW 2, only the execution routines are thread-safe.  All planner
-routines, etcetera, should be called by only a single thread at a time
-(*note Thread safety::).  _Unlike_ FFTW 2, there is no special
-`FFTW_THREADSAFE' flag for the planner to allow a given plan to be
-usable by multiple threads in parallel; this is now the case by default.
-
-   The multi-threaded version of FFTW 2 required you to pass the number
-of threads each time you execute the transform.  The number of threads
-is now stored in the plan, and is specified before the planner is
-called by `fftw_plan_with_nthreads'.  The threads initialization
-routine used to be called `fftw_threads_init' and would return zero on
-success; the new routine is called `fftw_init_threads' and returns zero
-on failure.  *Note Multi-threaded FFTW::.
-
-   There is no separate threads header file in FFTW 3; all the function
-prototypes are in `<fftw3.h>'.  However, you still have to link to a
-separate library (`-lfftw3_threads -lfftw3 -lm' on Unix), as well as to
-the threading library (e.g. POSIX threads on Unix).
-
-   ---------- Footnotes ----------
-
-   (1) We do our own buffering because GNU libc I/O routines are
-horribly slow for single-character I/O, apparently for thread-safety
-reasons (whether you are using threads or not).
-
-\1f
-File: fftw3.info,  Node: Installation and Customization,  Next: Acknowledgments,  Prev: Upgrading from FFTW version 2,  Up: Top
-
-9 Installation and Customization
-********************************
-
-This chapter describes the installation and customization of FFTW, the
-latest version of which may be downloaded from the FFTW home page
-(http://www.fftw.org).
-
-   In principle, FFTW should work on any system with an ANSI C compiler
-(`gcc' is fine).  However, planner time is drastically reduced if FFTW
-can exploit a hardware cycle counter; FFTW comes with cycle-counter
-support for all modern general-purpose CPUs, but you may need to add a
-couple of lines of code if your compiler is not yet supported (*note
-Cycle Counters::).  (On Unix, there will be a warning at the end of the
-`configure' output if no cycle counter is found.)  
-
-   Installation of FFTW is simplest if you have a Unix or a GNU system,
-such as GNU/Linux, and we describe this case in the first section below,
-including the use of special configuration options to e.g. install
-different precisions or exploit optimizations for particular
-architectures (e.g. SIMD).  Compilation on non-Unix systems is a more
-manual process, but we outline the procedure in the second section.  It
-is also likely that pre-compiled binaries will be available for popular
-systems.
-
-   Finally, we describe how you can customize FFTW for particular needs
-by generating _codelets_ for fast transforms of sizes not supported
-efficiently by the standard FFTW distribution.  
-
-* Menu:
-
-* Installation on Unix::
-* Installation on non-Unix systems::
-* Cycle Counters::
-* Generating your own code::
-
-\1f
-File: fftw3.info,  Node: Installation on Unix,  Next: Installation on non-Unix systems,  Prev: Installation and Customization,  Up: Installation and Customization
-
-9.1 Installation on Unix
-========================
-
-FFTW comes with a `configure' program in the GNU style.  Installation
-can be as simple as: 
-
-     ./configure
-     make
-     make install
-
-   This will build the uniprocessor complex and real transform libraries
-along with the test programs.  (We recommend that you use GNU `make' if
-it is available; on some systems it is called `gmake'.)  The "`make
-install'" command installs the fftw and rfftw libraries in standard
-places, and typically requires root privileges (unless you specify a
-different install directory with the `--prefix' flag to `configure').
-You can also type "`make check'" to put the FFTW test programs through
-their paces.  If you have problems during configuration or compilation,
-you may want to run "`make distclean'" before trying again; this
-ensures that you don't have any stale files left over from previous
-compilation attempts.
-
-   The `configure' script chooses the `gcc' compiler by default, if it
-is available; you can select some other compiler with:
-     ./configure CC="<the name of your C compiler>"
-
-   The `configure' script knows good `CFLAGS' (C compiler flags) for a
-few systems.  If your system is not known, the `configure' script will
-print out a warning.  In this case, you should re-configure FFTW with
-the command
-     ./configure CFLAGS="<write your CFLAGS here>"
-   and then compile as usual.  If you do find an optimal set of
-`CFLAGS' for your system, please let us know what they are (along with
-the output of `config.guess') so that we can include them in future
-releases.
-
-   `configure' supports all the standard flags defined by the GNU
-Coding Standards; see the `INSTALL' file in FFTW or the GNU web page
-(http://www.gnu.org/prep/standards_toc.html).  Note especially `--help'
-to list all flags and `--enable-shared' to create shared, rather than
-static, libraries.  `configure' also accepts a few FFTW-specific flags,
-particularly:
-
-   * `--enable-portable-binary': Disable compiler optimizations that
-     would produce unportable binaries. Important: Use this if you are
-     distributing compiled binaries to people who may not use exactly
-     the same processor as you.
-
-   * `--with-gcc-arch='arch: When compiling with `gcc', FFTW tries to
-     deduce the current CPU in order to tell `gcc' what architecture to
-     tune for; this option overrides that guess (i.e. arch should be a
-     valid argument for `gcc''s `-march' or `-mtune' flags).  You might
-     do this because the deduced architecture was wrong or because you
-     want to tune for a different CPU than the one you are compiling
-     with.  You can use `--without-gcc-arch' to disable
-     architecture-specific tuning entirely.  Note that if
-     `--enable-portable-binary' is enabled (above), then we use
-     `-mtune' but not `-march', so the resulting binary will run on any
-     architecture even though it is optimized for a particular one.
-
-   * `--enable-float': Produces a single-precision version of FFTW
-     (`float') instead of the default double-precision (`double').
-     *Note Precision::.
-
-   * `--enable-long-double': Produces a long-double precision version of
-     FFTW (`long double') instead of the default double-precision
-     (`double').  The `configure' script will halt with an error
-     message is `long double' is the same size as `double' on your
-     machine/compiler.  *Note Precision::.
-
-   * `--enable-threads': Enables compilation and installation of the
-     FFTW threads library (*note Multi-threaded FFTW::), which provides
-     a simple interface to parallel transforms for SMP systems.  By
-     default, the threads routines are not compiled.
-
-   * `--enable-openmp': Like `--enable-threads', but using OpenMP
-     compiler directives in order to induce parallelism rather than
-     spawning its own threads directly.  Useful especially for programs
-     already employing such directives, in order to minimize conflicts
-     between different parallelization mechanisms.  Use either
-     `--enable-openmp' or `--enable-threads', not both; in either case
-     the multi-threaded FFTW interface/library (*note Multi-threaded
-     FFTW::) is compiled (with different back ends).
-
-   * `--with-combined-threads': By default, if `--enable-threads' or
-     `--enable-openmp' are used, the threads support is compiled into a
-     separate library that must be linked in addition to the main FFTW
-     library.  This is so that users of the serial library do not need
-     to link the system threads libraries.  If
-     `--with-combined-threads' is specified, however, then no separate
-     threads library is created, and threads are included in the main
-     FFTW library.  This is mainly useful under Windows, where no
-     system threads library is required and inter-library dependencies
-     are problematic.
-
-   * `--enable-cell': Enables code to exploit the Cell processor (*note
-     FFTW on the Cell Processor::), assuming you have the Cell SDK.  By
-     default, code for the Cell processor is not compiled.
-
-   * `--disable-fortran': Disables inclusion of Fortran-callable
-     wrapper routines (*note Calling FFTW from Fortran::) in the
-     standard FFTW libraries.  These wrapper routines increase the
-     library size by only a negligible amount, so they are included by
-     default as long as the `configure' script finds a Fortran compiler
-     on your system.  (To specify a particular Fortran compiler foo,
-     pass `F77='foo to `configure'.)
-
-   * `--with-g77-wrappers': By default, when Fortran wrappers are
-     included, the wrappers employ the linking conventions of the
-     Fortran compiler detected by the `configure' script.  If this
-     compiler is GNU `g77', however, then _two_ versions of the
-     wrappers are included: one with `g77''s idiosyncratic convention
-     of appending two underscores to identifiers, and one with the more
-     common convention of appending only a single underscore.  This
-     way, the same FFTW library will work with both `g77' and other
-     Fortran compilers, such as GNU `gfortran'.  However, the converse
-     is not true: if you configure with a different compiler, then the
-     `g77'-compatible wrappers are not included.  By specifying
-     `--with-g77-wrappers', the `g77'-compatible wrappers are included
-     in addition to wrappers for whatever Fortran compiler `configure'
-     finds.  
-
-   * `--with-slow-timer': Disables the use of hardware cycle counters,
-     and falls back on `gettimeofday' or `clock'.  This greatly worsens
-     performance, and should generally not be used (unless you don't
-     have a cycle counter but still really want an optimized plan
-     regardless of the time).  *Note Cycle Counters::.
-
-   * `--enable-sse', `--enable-sse2', `--enable-altivec',
-     `--enable-mips-ps': Enable the compilation of SIMD code for SSE
-     (Pentium III+), SSE2 (Pentium IV+), AltiVec (PowerPC G4+), or MIPS
-     PS.  SSE, AltiVec, and MIPS PS only work with `--enable-float'
-     (above), while SSE2 only works in double precision (the default).
-     The resulting code will _still work_ on earlier CPUs lacking the
-     SIMD extensions (SIMD is automatically disabled, although the FFTW
-     library is still larger).
-        - These options require a compiler supporting SIMD extensions,
-          and compiler support is still a bit flaky: see the FFTW FAQ
-          for a list of compiler versions that have problems compiling
-          FFTW.
-
-        - With the Linux kernel, you may have to recompile the kernel
-          with the option to support SSE/SSE2/AltiVec (see the
-          "Processor type and features" settings).
-
-        - With AltiVec and `gcc', you may have to use the
-          `-mabi=altivec' option when compiling any code that links to
-          FFTW, in order to properly align the stack; otherwise, FFTW
-          could crash when it tries to use an AltiVec feature.  (This
-          is not necessary on MacOS X.)
-
-        - With SSE/SSE2 and `gcc', you should use a version of gcc that
-          properly aligns the stack when compiling any code that links
-          to FFTW.  By default, `gcc' 2.95 and later versions align the
-          stack as needed, but you should not compile FFTW with the
-          `-Os' option or the `-mpreferred-stack-boundary' option with
-          an argument less than 4.
-
-
-   To force `configure' to use a particular C compiler foo (instead of
-the default, usually `gcc'), pass `CC='foo to the `configure' script;
-you may also need to set the flags via the variable `CFLAGS' as
-described above.  
-
-\1f
-File: fftw3.info,  Node: Installation on non-Unix systems,  Next: Cycle Counters,  Prev: Installation on Unix,  Up: Installation and Customization
-
-9.2 Installation on non-Unix systems
-====================================
-
-It should be relatively straightforward to compile FFTW even on non-Unix
-systems lacking the niceties of a `configure' script.  Basically, you
-need to edit the `config.h' header (copy it from `config.h.in') to
-`#define' the various options and compiler characteristics, and then
-compile all the `.c' files in the relevant directories.
-
-   The `config.h' header contains about 100 options to set, each one
-initially an `#undef', each documented with a comment, and most of them
-fairly obvious.  For most of the options, you should simply `#define'
-them to `1' if they are applicable, although a few options require a
-particular value (e.g. `SIZEOF_LONG_LONG' should be defined to the size
-of the `long long' type, in bytes, or zero if it is not supported).  We
-will likely post some sample `config.h' files for various operating
-systems and compilers for you to use (at least as a starting point).
-Please let us know if you have to hand-create a configuration file
-(and/or a pre-compiled binary) that you want to share.
-
-   To create the FFTW library, you will then need to compile all of the
-`.c' files in the `kernel', `dft', `dft/scalar', `dft/scalar/codelets',
-`rdft', `rdft/scalar', `rdft/scalar/r2cf', `rdft/scalar/r2cb',
-`rdft/scalar/r2r', `reodft', and `api' directories.  If you are
-compiling with SIMD support (e.g. you defined `HAVE_SSE2' in
-`config.h'), then you also need to compile the `.c' files in the
-`simd', `simd/nonportable', `dft/simd', and `dft/simd/codelets'
-directories.
-
-   Once these files are all compiled, link them into a library, or a
-shared library, or directly into your program.
-
-   To compile the FFTW test program, additionally compile the code in
-the `libbench2/' directory, and link it into a library.  Then compile
-the code in the `tests/' directory and link it to the `libbench2' and
-FFTW libraries.  To compile the `fftw-wisdom' (command-line) tool
-(*note Wisdom Utilities::), compile `tools/fftw-wisdom.c' and link it
-to the `libbench2' and FFTW libraries
-
-\1f
-File: fftw3.info,  Node: Cycle Counters,  Next: Generating your own code,  Prev: Installation on non-Unix systems,  Up: Installation and Customization
-
-9.3 Cycle Counters
-==================
-
-FFTW's planner actually executes and times different possible FFT
-algorithms in order to pick the fastest plan for a given n.  In order
-to do this in as short a time as possible, however, the timer must have
-a very high resolution, and to accomplish this we employ the hardware
-"cycle counters" that are available on most CPUs.  Currently, FFTW
-supports the cycle counters on x86, PowerPC/POWER, Alpha, UltraSPARC
-(SPARC v9), IA64, PA-RISC, and MIPS processors.
-
-   Access to the cycle counters, unfortunately, is a compiler and/or
-operating-system dependent task, often requiring inline assembly
-language, and it may be that your compiler is not supported.  If you are
-_not_ supported, FFTW will by default fall back on its estimator
-(effectively using `FFTW_ESTIMATE' for all plans).  
-
-   You can add support by editing the file `kernel/cycle.h'; normally,
-this will involve adapting one of the examples already present in order
-to use the inline-assembler syntax for your C compiler, and will only
-require a couple of lines of code.  Anyone adding support for a new
-system to `cycle.h' is encouraged to email us at <fftw@fftw.org>.
-
-   If a cycle counter is not available on your system (e.g. some
-embedded processor), and you don't want to use estimated plans, as a
-last resort you can use the `--with-slow-timer' option to `configure'
-(on Unix) or `#define WITH_SLOW_TIMER' in `config.h' (elsewhere).  This
-will use the much lower-resolution `gettimeofday' function, or even
-`clock' if the former is unavailable, and planning will be extremely
-slow.
-
-\1f
-File: fftw3.info,  Node: Generating your own code,  Prev: Cycle Counters,  Up: Installation and Customization
-
-9.4 Generating your own code
-============================
-
-The directory `genfft' contains the programs that were used to generate
-FFTW's "codelets," which are hard-coded transforms of small sizes.  We
-do not expect casual users to employ the generator, which is a rather
-sophisticated program that generates directed acyclic graphs of FFT
-algorithms and performs algebraic simplifications on them.  It was
-written in Objective Caml, a dialect of ML, which is available at
-`http://pauillac.inria.fr/ocaml/'.  
-
-   If you have Objective Caml installed (along with recent versions of
-GNU `autoconf', `automake', and `libtool'), then you can change the set
-of codelets that are generated or play with the generation options.
-The set of generated codelets is specified by the
-`dft/codelets/*/Makefile.am', `dft/simd/codelets/Makefile.am', and
-`rdft/codelets/*/Makefile.am' files.  For example, you can add
-efficient REDFT codelets of small sizes by modifying
-`rdft/codelets/r2r/Makefile.am'.  After you modify any `Makefile.am'
-files, you can type `sh bootstrap.sh' in the top-level directory
-followed by `make' to re-generate the files.
-
-   We do not provide more details about the code-generation process,
-since we do not expect that most users will need to generate their own
-code.  However, feel free to contact us at <fftw@fftw.org> if you are
-interested in the subject.
-
-   You might find it interesting to learn Caml and/or some modern
-programming techniques that we used in the generator (including monadic
-programming), especially if you heard the rumor that Java and
-object-oriented programming are the latest advancement in the field.
-The internal operation of the codelet generator is described in the
-paper, "A Fast Fourier Transform Compiler," by M. Frigo, which is
-available from the FFTW home page (http://www.fftw.org) and also
-appeared in the `Proceedings of the 1999 ACM SIGPLAN Conference on
-Programming Language Design and Implementation (PLDI)'.
-
-\1f
-File: fftw3.info,  Node: Acknowledgments,  Next: License and Copyright,  Prev: Installation and Customization,  Up: Top
-
-10 Acknowledgments
-******************
-
-Matteo Frigo was supported in part by the Special Research Program SFB
-F011 "AURORA" of the Austrian Science Fund FWF and by MIT Lincoln
-Laboratory.  For previous versions of FFTW, he was supported in part by
-the Defense Advanced Research Projects Agency (DARPA), under Grants
-N00014-94-1-0985 and F30602-97-1-0270, and by a Digital Equipment
-Corporation Fellowship.
-
-   Steven G. Johnson was supported in part by a Dept. of Defense NDSEG
-Fellowship, an MIT Karl Taylor Compton Fellowship, and by the Materials
-Research Science and Engineering Center program of the National Science
-Foundation under award DMR-9400334.
-
-   Code for the Cell Broadband Engine was graciously donated to the FFTW
-project by the IBM Austin Research Lab.
-
-   Code for the MIPS paired-single SIMD support was graciously donated
-to the FFTW project by CodeSourcery, Inc.
-
-   We are grateful to Sun Microsystems Inc. for its donation of a
-cluster of 9 8-processor Ultra HPC 5000 SMPs (24 Gflops peak). These
-machines served as the primary platform for the development of early
-versions of FFTW.
-
-   We thank Intel Corporation for donating a four-processor Pentium Pro
-machine.  We thank the GNU/Linux community for giving us a decent OS to
-run on that machine.
-
-   We are thankful to the AMD corporation for donating an AMD Athlon XP
-1700+ computer to the FFTW project.
-
-   We thank the Compaq/HP testdrive program and VA Software Corporation
-(SourceForge.net) for providing remote access to machines that were used
-to test FFTW.
-
-   The `genfft' suite of code generators was written using Objective
-Caml, a dialect of ML.  Objective Caml is a small and elegant language
-developed by Xavier Leroy.  The implementation is available from
-`http://caml.inria.fr/' (http://caml.inria.fr/).  In previous releases
-of FFTW, `genfft' was written in Caml Light, by the same authors.  An
-even earlier implementation of `genfft' was written in Scheme, but Caml
-is definitely better for this kind of application.  
-
-   FFTW uses many tools from the GNU project, including `automake',
-`texinfo', and `libtool'.
-
-   Prof. Charles E. Leiserson of MIT provided continuous support and
-encouragement.  This program would not exist without him.  Charles also
-proposed the name "codelets" for the basic FFT blocks.  
-
-   Prof. John D. Joannopoulos of MIT demonstrated continuing tolerance
-of Steven's "extra-curricular" computer-science activities, as well as
-remarkable creativity in working them into his grant proposals.
-Steven's physics degree would not exist without him.
-
-   Franz Franchetti wrote SIMD extensions to FFTW 2, which eventually
-led to the SIMD support in FFTW 3.
-
-   Stefan Kral wrote most of the K7 code generator distributed with FFTW
-3.0.x and 3.1.x.
-
-   Andrew Sterian contributed the Windows timing code in FFTW 2.
-
-   Didier Miras reported a bug in the test procedure used in FFTW 1.2.
-We now use a completely different test algorithm by Funda Ergun that
-does not require a separate FFT program to compare against.
-
-   Wolfgang Reimer contributed the Pentium cycle counter and a few fixes
-that help portability.
-
-   Ming-Chang Liu uncovered a well-hidden bug in the complex transforms
-of FFTW 2.0 and supplied a patch to correct it.
-
-   The FFTW FAQ was written in `bfnn' (Bizarre Format With No Name) and
-formatted using the tools developed by Ian Jackson for the Linux FAQ.
-
-   _We are especially thankful to all of our users for their continuing
-support, feedback, and interest during our development of FFTW._
-
-\1f
-File: fftw3.info,  Node: License and Copyright,  Next: Concept Index,  Prev: Acknowledgments,  Up: Top
-
-11 License and Copyright
-************************
-
-FFTW is Copyright (C) 2003 Matteo Frigo, Copyright (C) 2003
-Massachusetts Institute of Technology.
-
-   FFTW is free software; you can redistribute it and/or modify it
-under the terms of the GNU General Public License as published by the
-Free Software Foundation; either version 2 of the License, or (at your
-option) any later version.
-
-   This program is distributed in the hope that it will be useful, but
-WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-General Public License for more details.
-
-   You should have received a copy of the GNU General Public License
-along with this program; if not, write to the Free Software Foundation,
-Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.  You can
-also find the GPL on the GNU web site
-(http://www.gnu.org/copyleft/gpl.html).
-
-   In addition, we kindly ask you to acknowledge FFTW and its authors in
-any program or publication in which you use FFTW.  (You are not
-_required_ to do so; it is up to your common sense to decide whether
-you want to comply with this request or not.)  For general
-publications, we suggest referencing: Matteo Frigo and Steven G.
-Johnson, "The design and implementation of FFTW3," Proc. IEEE 93 (2),
-216-231 (2005).
-
-   Non-free versions of FFTW are available under terms different from
-those of the General Public License. (e.g. they do not require you to
-accompany any object code using FFTW with the corresponding source
-code.)  For these alternative terms you must purchase a license from
-MIT's Technology Licensing Office.  Users interested in such a license
-should contact us (<fftw@fftw.org>) for more information.
-
-\1f
-File: fftw3.info,  Node: Concept Index,  Next: Library Index,  Prev: License and Copyright,  Up: Top
-
-12 Concept Index
-****************
-
-\0\b[index\0\b]
-* Menu:
-
-* 64-bit architecture:                   64-bit Guru Interface.
-                                                              (line   6)
-* advanced interface <1>:                Advanced Interface.  (line   6)
-* advanced interface <2>:                Row-major Format.    (line  26)
-* advanced interface <3>:                Complex Multi-Dimensional DFTs.
-                                                              (line  43)
-* advanced interface:                    Introduction.        (line  67)
-* algorithm:                             Introduction.        (line  98)
-* alignment <1>:                         New-array Execute Functions.
-                                                              (line  36)
-* alignment <2>:                         Planner Flags.       (line  75)
-* alignment <3>:                         Memory Allocation.   (line  12)
-* alignment:                             Data Alignment.      (line   6)
-* AltiVec:                               SIMD alignment and fftw_malloc.
-                                                              (line  13)
-* basic interface <1>:                   Basic Interface.     (line   6)
-* basic interface <2>:                   Tutorial.            (line  14)
-* basic interface:                       Introduction.        (line  67)
-* C multi-dimensional arrays:            Fixed-size Arrays in C.
-                                                              (line   6)
-* C++ <1>:                               Memory Allocation.   (line  24)
-* C++ <2>:                               Complex numbers.     (line  36)
-* C++ <3>:                               Dynamic Arrays in C. (line  32)
-* C++ <4>:                               SIMD alignment and fftw_malloc.
-                                                              (line  33)
-* C++:                                   Complex One-Dimensional DFTs.
-                                                              (line 110)
-* c2r <1>:                               Real-data DFTs.      (line  90)
-* c2r <2>:                               Planner Flags.       (line  73)
-* c2r:                                   One-Dimensional DFTs of Real Data.
-                                                              (line  36)
-* C99 <1>:                               Precision.           (line  30)
-* C99 <2>:                               Complex numbers.     (line  22)
-* C99:                                   Dynamic Arrays in C. (line  32)
-* Caml <1>:                              Acknowledgments.     (line  46)
-* Caml:                                  Generating your own code.
-                                                              (line  12)
-* Cell processor <1>:                    Installation on Unix.
-                                                              (line  98)
-* Cell processor:                        FFTW on the Cell Processor.
-                                                              (line   6)
-* code generator <1>:                    Generating your own code.
-                                                              (line   6)
-* code generator:                        Introduction.        (line  80)
-* codelet <1>:                           Acknowledgments.     (line  53)
-* codelet <2>:                           Generating your own code.
-                                                              (line   7)
-* codelet <3>:                           Installation and Customization.
-                                                              (line  29)
-* codelet:                               Introduction.        (line  80)
-* column-major <1>:                      Fortran Examples.    (line  93)
-* column-major <2>:                      Fortran-interface routines.
-                                                              (line  23)
-* column-major:                          Column-major Format. (line   6)
-* compiler <1>:                          Cycle Counters.      (line  14)
-* compiler <2>:                          Installation on Unix.
-                                                              (line 162)
-* compiler <3>:                          Installation and Customization.
-                                                              (line  16)
-* compiler:                              Introduction.        (line  86)
-* compiler flags:                        Installation on Unix.
-                                                              (line  29)
-* configuration routines:                Wisdom Utilities.    (line  26)
-* configure <1>:                         Installation on Unix.
-                                                              (line   7)
-* configure <2>:                         Cell Installation.   (line  10)
-* configure:                             Installation and Supported Hardware/Software.
-                                                              (line  11)
-* cycle counter <1>:                     Cycle Counters.      (line   6)
-* cycle counter:                         Installation and Customization.
-                                                              (line  16)
-* DCT <1>:                               1d Real-even DFTs (DCTs).
-                                                              (line  24)
-* DCT <2>:                               Real-to-Real Transform Kinds.
-                                                              (line  32)
-* DCT:                                   Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  16)
-* Devil:                                 Complex One-Dimensional DFTs.
-                                                              (line   8)
-* DFT <1>:                               The 1d Discrete Fourier Transform (DFT).
-                                                              (line   6)
-* DFT <2>:                               Complex One-Dimensional DFTs.
-                                                              (line 102)
-* DFT:                                   Introduction.        (line   9)
-* DHT <1>:                               1d Discrete Hartley Transforms (DHTs).
-                                                              (line   6)
-* DHT:                                   The Discrete Hartley Transform.
-                                                              (line  12)
-* discrete cosine transform <1>:         1d Real-even DFTs (DCTs).
-                                                              (line  24)
-* discrete cosine transform <2>:         Real-to-Real Transform Kinds.
-                                                              (line  32)
-* discrete cosine transform:             Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  16)
-* discrete Fourier transform <1>:        The 1d Discrete Fourier Transform (DFT).
-                                                              (line   6)
-* discrete Fourier transform:            Introduction.        (line   9)
-* discrete Hartley transform <1>:        1d Discrete Hartley Transforms (DHTs).
-                                                              (line   6)
-* discrete Hartley transform <2>:        Real-to-Real Transform Kinds.
-                                                              (line  29)
-* discrete Hartley transform:            The Discrete Hartley Transform.
-                                                              (line  12)
-* discrete sine transform <1>:           1d Real-odd DFTs (DSTs).
-                                                              (line  24)
-* discrete sine transform <2>:           Real-to-Real Transform Kinds.
-                                                              (line  46)
-* discrete sine transform:               Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  16)
-* dist <1>:                              Guru vector and transform sizes.
-                                                              (line  39)
-* dist:                                  Advanced Complex DFTs.
-                                                              (line  22)
-* DST <1>:                               1d Real-odd DFTs (DSTs).
-                                                              (line  24)
-* DST <2>:                               Real-to-Real Transform Kinds.
-                                                              (line  46)
-* DST:                                   Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  16)
-* Ecclesiastes:                          Caveats in Using Wisdom.
-                                                              (line   7)
-* execute <1>:                           New-array Execute Functions.
-                                                              (line   6)
-* execute <2>:                           Complex One-Dimensional DFTs.
-                                                              (line  81)
-* execute:                               Introduction.        (line  43)
-* FFTW:                                  Introduction.        (line  33)
-* fftw-wisdom utility <1>:               Wisdom Utilities.    (line  15)
-* fftw-wisdom utility:                   Caveats in Using Wisdom.
-                                                              (line  40)
-* fftw-wisdom-to-conf utility:           Wisdom Utilities.    (line  26)
-* flags <1>:                             FFTW Constants in Fortran.
-                                                              (line  19)
-* flags <2>:                             Guru Real-to-real Transforms.
-                                                              (line  27)
-* flags <3>:                             Guru Real-data DFTs. (line  58)
-* flags <4>:                             Guru Complex DFTs.   (line  25)
-* flags <5>:                             Real-to-Real Transforms.
-                                                              (line  80)
-* flags <6>:                             Real-data DFTs.      (line  70)
-* flags <7>:                             Complex DFTs.        (line  75)
-* flags <8>:                             One-Dimensional DFTs of Real Data.
-                                                              (line  57)
-* flags:                                 Complex One-Dimensional DFTs.
-                                                              (line  63)
-* Fortran interface <1>:                 Calling FFTW from Fortran.
-                                                              (line   6)
-* Fortran interface:                     Column-major Format. (line  18)
-* Fortran-callable wrappers:             Installation on Unix.
-                                                              (line 102)
-* frequency <1>:                         The 1d Discrete Fourier Transform (DFT).
-                                                              (line  14)
-* frequency:                             Complex One-Dimensional DFTs.
-                                                              (line  95)
-* g77:                                   Installation on Unix.
-                                                              (line 123)
-* guru interface <1>:                    Fortran-interface routines.
-                                                              (line  39)
-* guru interface <2>:                    Guru Interface.      (line   6)
-* guru interface <3>:                    Complex Multi-Dimensional DFTs.
-                                                              (line  43)
-* guru interface:                        Introduction.        (line  67)
-* halfcomplex format <1>:                The 1d Real-data DFT.
-                                                              (line  20)
-* halfcomplex format <2>:                The Halfcomplex-format DFT.
-                                                              (line   9)
-* halfcomplex format:                    One-Dimensional DFTs of Real Data.
-                                                              (line  71)
-* hc2r <1>:                              Planner Flags.       (line  73)
-* hc2r:                                  The Halfcomplex-format DFT.
-                                                              (line   9)
-* Hermitian <1>:                         The 1d Real-data DFT.
-                                                              (line   9)
-* Hermitian:                             One-Dimensional DFTs of Real Data.
-                                                              (line   7)
-* howmany loop:                          Guru vector and transform sizes.
-                                                              (line  39)
-* howmany parameter:                     Advanced Complex DFTs.
-                                                              (line  22)
-* IDCT <1>:                              1d Real-even DFTs (DCTs).
-                                                              (line  51)
-* IDCT <2>:                              Real-to-Real Transform Kinds.
-                                                              (line  40)
-* IDCT:                                  Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  41)
-* in-place <1>:                          Guru Real-data DFTs. (line  48)
-* in-place <2>:                          Real-to-Real Transforms.
-                                                              (line  68)
-* in-place <3>:                          Real-data DFT Array Format.
-                                                              (line  31)
-* in-place <4>:                          Real-data DFTs.      (line  63)
-* in-place <5>:                          Complex DFTs.        (line  62)
-* in-place <6>:                          One-Dimensional DFTs of Real Data.
-                                                              (line  46)
-* in-place:                              Complex One-Dimensional DFTs.
-                                                              (line  56)
-* installation:                          Installation and Customization.
-                                                              (line   6)
-* interleaved format:                    Interleaved and split arrays.
-                                                              (line  13)
-* kind (r2r) <1>:                        Real-to-Real Transform Kinds.
-                                                              (line   6)
-* kind (r2r):                            More DFTs of Real Data.
-                                                              (line  51)
-* linking on Unix:                       Usage of Multi-threaded FFTW.
-                                                              (line  14)
-* LISP:                                  Acknowledgments.     (line  46)
-* MIPS PS:                               SIMD alignment and fftw_malloc.
-                                                              (line  13)
-* monadic programming:                   Generating your own code.
-                                                              (line  30)
-* new-array execution:                   New-array Execute Functions.
-                                                              (line   6)
-* normalization <1>:                     1d Discrete Hartley Transforms (DHTs).
-                                                              (line   8)
-* normalization <2>:                     1d Real-odd DFTs (DSTs).
-                                                              (line  63)
-* normalization <3>:                     1d Real-even DFTs (DCTs).
-                                                              (line  68)
-* normalization <4>:                     The 1d Real-data DFT.
-                                                              (line  29)
-* normalization <5>:                     The 1d Discrete Fourier Transform (DFT).
-                                                              (line   9)
-* normalization <6>:                     Real-to-Real Transform Kinds.
-                                                              (line  18)
-* normalization <7>:                     Real-data DFTs.      (line  97)
-* normalization <8>:                     Complex DFTs.        (line  82)
-* normalization <9>:                     The Discrete Hartley Transform.
-                                                              (line  23)
-* normalization <10>:                    Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  68)
-* normalization <11>:                    The Halfcomplex-format DFT.
-                                                              (line  23)
-* normalization <12>:                    Multi-Dimensional DFTs of Real Data.
-                                                              (line  59)
-* normalization:                         Complex One-Dimensional DFTs.
-                                                              (line 102)
-* number of threads:                     How Many Threads to Use?.
-                                                              (line   6)
-* out-of-place <1>:                      Real-data DFT Array Format.
-                                                              (line  27)
-* out-of-place:                          Planner Flags.       (line  63)
-* padding <1>:                           Real-data DFT Array Format.
-                                                              (line  31)
-* padding <2>:                           Real-data DFTs.      (line  68)
-* padding <3>:                           Multi-Dimensional DFTs of Real Data.
-                                                              (line  38)
-* padding:                               One-Dimensional DFTs of Real Data.
-                                                              (line  17)
-* parallel transform:                    Multi-threaded FFTW. (line   6)
-* partial order:                         Complex Multi-Dimensional DFTs.
-                                                              (line  37)
-* plan <1>:                              Complex One-Dimensional DFTs.
-                                                              (line  42)
-* plan:                                  Introduction.        (line  42)
-* planner:                               Introduction.        (line  41)
-* portability <1>:                       Installation on Unix.
-                                                              (line  46)
-* portability <2>:                       Installation and Customization.
-                                                              (line  16)
-* portability <3>:                       Wisdom of Fortran?.  (line  11)
-* portability <4>:                       Fortran-interface routines.
-                                                              (line  17)
-* portability <5>:                       Installation and Supported Hardware/Software.
-                                                              (line  13)
-* portability <6>:                       Complex numbers.     (line  36)
-* portability <7>:                       Caveats in Using Wisdom.
-                                                              (line   9)
-* portability:                           SIMD alignment and fftw_malloc.
-                                                              (line  22)
-* precision <1>:                         Installation on Unix.
-                                                              (line  63)
-* precision <2>:                         Precision.           (line   6)
-* precision <3>:                         SIMD alignment and fftw_malloc.
-                                                              (line  13)
-* precision <4>:                         One-Dimensional DFTs of Real Data.
-                                                              (line  40)
-* precision:                             Complex One-Dimensional DFTs.
-                                                              (line 115)
-* r2c <1>:                               Multi-dimensional Transforms.
-                                                              (line  14)
-* r2c <2>:                               Real-data DFTs.      (line  18)
-* r2c <3>:                               The Halfcomplex-format DFT.
-                                                              (line   6)
-* r2c:                                   One-Dimensional DFTs of Real Data.
-                                                              (line  36)
-* r2c/c2r multi-dimensional array format <1>: Fortran Examples.
-                                                              (line  93)
-* r2c/c2r multi-dimensional array format <2>: Real-data DFT Array Format.
-                                                              (line   6)
-* r2c/c2r multi-dimensional array format: Multi-Dimensional DFTs of Real Data.
-                                                              (line  26)
-* r2hc:                                  The Halfcomplex-format DFT.
-                                                              (line   6)
-* r2r <1>:                               The 1d Real-data DFT.
-                                                              (line  20)
-* r2r <2>:                               Real-to-Real Transforms.
-                                                              (line   6)
-* r2r:                                   More DFTs of Real Data.
-                                                              (line  13)
-* rank:                                  Complex Multi-Dimensional DFTs.
-                                                              (line  25)
-* real-even DFT <1>:                     1d Real-even DFTs (DCTs).
-                                                              (line   9)
-* real-even DFT:                         Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  16)
-* real-odd DFT <1>:                      1d Real-odd DFTs (DSTs).
-                                                              (line   9)
-* real-odd DFT:                          Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  16)
-* REDFT <1>:                             Generating your own code.
-                                                              (line  21)
-* REDFT <2>:                             1d Real-even DFTs (DCTs).
-                                                              (line   9)
-* REDFT:                                 Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  16)
-* RODFT <1>:                             1d Real-odd DFTs (DSTs).
-                                                              (line   9)
-* RODFT:                                 Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  16)
-* row-major <1>:                         Guru vector and transform sizes.
-                                                              (line  48)
-* row-major <2>:                         Real-to-Real Transforms.
-                                                              (line  47)
-* row-major <3>:                         Complex DFTs.        (line  45)
-* row-major:                             Row-major Format.    (line   6)
-* saving plans to disk <1>:              Wisdom.              (line   6)
-* saving plans to disk:                  Words of Wisdom-Saving Plans.
-                                                              (line   6)
-* shared-memory:                         Multi-threaded FFTW. (line  24)
-* SIMD <1>:                              SIMD alignment and fftw_malloc.
-                                                              (line  13)
-* SIMD:                                  Complex One-Dimensional DFTs.
-                                                              (line  36)
-* split format:                          Interleaved and split arrays.
-                                                              (line  16)
-* SSE:                                   SIMD alignment and fftw_malloc.
-                                                              (line  13)
-* SSE2:                                  SIMD alignment and fftw_malloc.
-                                                              (line  13)
-* stride <1>:                            Guru vector and transform sizes.
-                                                              (line  28)
-* stride <2>:                            Advanced Complex DFTs.
-                                                              (line  40)
-* stride:                                Row-major Format.    (line  31)
-* thread safety:                         Thread safety.       (line   6)
-* threads <1>:                           Installation on Unix.
-                                                              (line  73)
-* threads <2>:                           Thread safety.       (line   6)
-* threads:                               Multi-threaded FFTW. (line  24)
-* vector <1>:                            Guru Interface.      (line  10)
-* vector:                                Advanced Complex DFTs.
-                                                              (line  52)
-* wisdom <1>:                            Wisdom.              (line   6)
-* wisdom:                                Words of Wisdom-Saving Plans.
-                                                              (line   6)
-* wisdom, problems with:                 Caveats in Using Wisdom.
-                                                              (line   6)
-* wisdom, system-wide <1>:               Wisdom Import.       (line  34)
-* wisdom, system-wide:                   Caveats in Using Wisdom.
-                                                              (line  33)
-
-\1f
-File: fftw3.info,  Node: Library Index,  Prev: Concept Index,  Up: Top
-
-13 Library Index
-****************
-
-\0\b[index\0\b]
-* Menu:
-
-* dfftw_destroy_plan:                    Fortran Examples.    (line  25)
-* dfftw_execute:                         FFTW Execution in Fortran.
-                                                              (line  11)
-* dfftw_execute_dft <1>:                 Fortran Examples.    (line  25)
-* dfftw_execute_dft:                     FFTW Execution in Fortran.
-                                                              (line  28)
-* dfftw_execute_dft_r2c:                 Fortran Examples.    (line  75)
-* dfftw_export_wisdom:                   Wisdom of Fortran?.  (line  16)
-* dfftw_forget_wisdom:                   Wisdom of Fortran?.  (line  16)
-* dfftw_import_system_wisdom:            Wisdom of Fortran?.  (line  16)
-* dfftw_import_wisdom:                   Wisdom of Fortran?.  (line  16)
-* dfftw_init_threads:                    Fortran Examples.    (line  36)
-* dfftw_plan_dft_1d:                     Fortran Examples.    (line  25)
-* dfftw_plan_dft_3d:                     Fortran Examples.    (line  60)
-* dfftw_plan_dft_r2c_1d:                 Fortran Examples.    (line  75)
-* dfftw_plan_dft_r2c_2d:                 Fortran Examples.    (line  88)
-* dfftw_plan_with_nthreads:              Fortran Examples.    (line  36)
-* FFTW_BACKWARD <1>:                     One-Dimensional DFTs of Real Data.
-                                                              (line  38)
-* FFTW_BACKWARD:                         Complex One-Dimensional DFTs.
-                                                              (line  59)
-* fftw_cleanup:                          Using Plans.         (line  36)
-* fftw_cleanup_threads:                  Usage of Multi-threaded FFTW.
-                                                              (line  50)
-* fftw_complex <1>:                      Complex numbers.     (line  11)
-* fftw_complex:                          Complex One-Dimensional DFTs.
-                                                              (line  40)
-* FFTW_DESTROY_INPUT:                    Planner Flags.       (line  61)
-* fftw_destroy_plan <1>:                 Using Plans.         (line  27)
-* fftw_destroy_plan:                     Complex One-Dimensional DFTs.
-                                                              (line  90)
-* FFTW_DHT <1>:                          Real-to-Real Transform Kinds.
-                                                              (line  28)
-* FFTW_DHT:                              The Discrete Hartley Transform.
-                                                              (line  12)
-* FFTW_ESTIMATE <1>:                     Cycle Counters.      (line  18)
-* FFTW_ESTIMATE <2>:                     Planner Flags.       (line  27)
-* FFTW_ESTIMATE <3>:                     Words of Wisdom-Saving Plans.
-                                                              (line  22)
-* FFTW_ESTIMATE:                         Complex One-Dimensional DFTs.
-                                                              (line  69)
-* fftw_execute <1>:                      New-array Execute Functions.
-                                                              (line   8)
-* fftw_execute <2>:                      Using Plans.         (line  13)
-* fftw_execute:                          Complex One-Dimensional DFTs.
-                                                              (line  80)
-* fftw_execute_dft:                      New-array Execute Functions.
-                                                              (line  80)
-* fftw_execute_dft_c2r:                  New-array Execute Functions.
-                                                              (line  80)
-* fftw_execute_dft_r2c:                  New-array Execute Functions.
-                                                              (line  80)
-* fftw_execute_dft_r2r:                  New-array Execute Functions.
-                                                              (line  80)
-* fftw_execute_split_dft:                New-array Execute Functions.
-                                                              (line  80)
-* fftw_execute_split_dft_c2r:            New-array Execute Functions.
-                                                              (line  80)
-* fftw_execute_split_dft_r2c:            New-array Execute Functions.
-                                                              (line  80)
-* FFTW_EXHAUSTIVE <1>:                   Planner Flags.       (line  42)
-* FFTW_EXHAUSTIVE:                       Words of Wisdom-Saving Plans.
-                                                              (line  22)
-* fftw_export_wisdom:                    Wisdom Export.       (line   9)
-* fftw_export_wisdom_to_file <1>:        Wisdom Export.       (line   9)
-* fftw_export_wisdom_to_file:            Words of Wisdom-Saving Plans.
-                                                              (line  29)
-* fftw_export_wisdom_to_string:          Wisdom Export.       (line   9)
-* fftw_flops:                            Using Plans.         (line  51)
-* fftw_forget_wisdom <1>:                Forgetting Wisdom.   (line   7)
-* fftw_forget_wisdom:                    Words of Wisdom-Saving Plans.
-                                                              (line  47)
-* FFTW_FORWARD <1>:                      One-Dimensional DFTs of Real Data.
-                                                              (line  38)
-* FFTW_FORWARD:                          Complex One-Dimensional DFTs.
-                                                              (line  59)
-* fftw_fprint_plan:                      Using Plans.         (line  65)
-* fftw_free <1>:                         Memory Allocation.   (line   8)
-* fftw_free <2>:                         SIMD alignment and fftw_malloc.
-                                                              (line  25)
-* fftw_free:                             Complex One-Dimensional DFTs.
-                                                              (line  92)
-* FFTW_HC2R <1>:                         Real-to-Real Transform Kinds.
-                                                              (line  25)
-* FFTW_HC2R:                             The Halfcomplex-format DFT.
-                                                              (line   9)
-* fftw_import_system_wisdom <1>:         Wisdom Import.       (line  10)
-* fftw_import_system_wisdom:             Caveats in Using Wisdom.
-                                                              (line  36)
-* fftw_import_wisdom:                    Wisdom Import.       (line  10)
-* fftw_import_wisdom_from_file <1>:      Wisdom Import.       (line  10)
-* fftw_import_wisdom_from_file:          Words of Wisdom-Saving Plans.
-                                                              (line  34)
-* fftw_import_wisdom_from_string:        Wisdom Import.       (line  10)
-* fftw_init_threads:                     Usage of Multi-threaded FFTW.
-                                                              (line  20)
-* fftw_iodim <1>:                        Fortran-interface routines.
-                                                              (line  39)
-* fftw_iodim:                            Guru vector and transform sizes.
-                                                              (line  15)
-* fftw_iodim64:                          64-bit Guru Interface.
-                                                              (line  46)
-* fftw_malloc <1>:                       Memory Allocation.   (line   8)
-* fftw_malloc <2>:                       Dynamic Arrays in C. (line  15)
-* fftw_malloc <3>:                       SIMD alignment and fftw_malloc.
-                                                              (line  25)
-* fftw_malloc:                           Complex One-Dimensional DFTs.
-                                                              (line  34)
-* FFTW_MEASURE <1>:                      Planner Flags.       (line  32)
-* FFTW_MEASURE <2>:                      Words of Wisdom-Saving Plans.
-                                                              (line  22)
-* FFTW_MEASURE:                          Complex One-Dimensional DFTs.
-                                                              (line  64)
-* FFTW_NO_TIMELIMIT:                     Planner Flags.       (line  95)
-* FFTW_PATIENT <1>:                      How Many Threads to Use?.
-                                                              (line  20)
-* FFTW_PATIENT <2>:                      Planner Flags.       (line  37)
-* FFTW_PATIENT <3>:                      Words of Wisdom-Saving Plans.
-                                                              (line  22)
-* FFTW_PATIENT:                          Complex One-Dimensional DFTs.
-                                                              (line 119)
-* fftw_plan <1>:                         Using Plans.         (line   8)
-* fftw_plan:                             Complex One-Dimensional DFTs.
-                                                              (line  48)
-* fftw_plan_dft <1>:                     Complex DFTs.        (line  18)
-* fftw_plan_dft:                         Complex Multi-Dimensional DFTs.
-                                                              (line  22)
-* fftw_plan_dft_1d <1>:                  Complex DFTs.        (line  18)
-* fftw_plan_dft_1d:                      Complex One-Dimensional DFTs.
-                                                              (line  48)
-* fftw_plan_dft_2d <1>:                  Complex DFTs.        (line  18)
-* fftw_plan_dft_2d:                      Complex Multi-Dimensional DFTs.
-                                                              (line  22)
-* fftw_plan_dft_3d <1>:                  Complex DFTs.        (line  18)
-* fftw_plan_dft_3d:                      Complex Multi-Dimensional DFTs.
-                                                              (line  22)
-* fftw_plan_dft_c2r:                     Real-data DFTs.      (line  90)
-* fftw_plan_dft_c2r_1d <1>:              Real-data DFTs.      (line  90)
-* fftw_plan_dft_c2r_1d:                  One-Dimensional DFTs of Real Data.
-                                                              (line  34)
-* fftw_plan_dft_c2r_2d:                  Real-data DFTs.      (line  90)
-* fftw_plan_dft_c2r_3d:                  Real-data DFTs.      (line  90)
-* fftw_plan_dft_r2c <1>:                 Real-data DFTs.      (line  18)
-* fftw_plan_dft_r2c:                     Multi-Dimensional DFTs of Real Data.
-                                                              (line  17)
-* fftw_plan_dft_r2c_1d <1>:              Real-data DFTs.      (line  18)
-* fftw_plan_dft_r2c_1d:                  One-Dimensional DFTs of Real Data.
-                                                              (line  34)
-* fftw_plan_dft_r2c_2d <1>:              Real-data DFTs.      (line  18)
-* fftw_plan_dft_r2c_2d:                  Multi-Dimensional DFTs of Real Data.
-                                                              (line  17)
-* fftw_plan_dft_r2c_3d <1>:              Real-data DFTs.      (line  18)
-* fftw_plan_dft_r2c_3d:                  Multi-Dimensional DFTs of Real Data.
-                                                              (line  17)
-* fftw_plan_guru64_dft:                  64-bit Guru Interface.
-                                                              (line  36)
-* fftw_plan_guru_dft:                    Guru Complex DFTs.   (line  17)
-* fftw_plan_guru_dft_c2r:                Guru Real-data DFTs. (line  29)
-* fftw_plan_guru_dft_r2c:                Guru Real-data DFTs. (line  29)
-* fftw_plan_guru_r2r:                    Guru Real-to-real Transforms.
-                                                              (line  12)
-* fftw_plan_guru_split_dft:              Guru Complex DFTs.   (line  17)
-* fftw_plan_guru_split_dft_c2r:          Guru Real-data DFTs. (line  29)
-* fftw_plan_guru_split_dft_r2c:          Guru Real-data DFTs. (line  29)
-* fftw_plan_many_dft:                    Advanced Complex DFTs.
-                                                              (line  12)
-* fftw_plan_many_dft_c2r:                Advanced Real-data DFTs.
-                                                              (line  18)
-* fftw_plan_many_dft_r2c:                Advanced Real-data DFTs.
-                                                              (line  18)
-* fftw_plan_many_r2r:                    Advanced Real-to-real Transforms.
-                                                              (line  12)
-* fftw_plan_r2r <1>:                     Real-to-Real Transforms.
-                                                              (line  19)
-* fftw_plan_r2r:                         More DFTs of Real Data.
-                                                              (line  39)
-* fftw_plan_r2r_1d <1>:                  Real-to-Real Transforms.
-                                                              (line  19)
-* fftw_plan_r2r_1d:                      More DFTs of Real Data.
-                                                              (line  39)
-* fftw_plan_r2r_2d <1>:                  Real-to-Real Transforms.
-                                                              (line  19)
-* fftw_plan_r2r_2d:                      More DFTs of Real Data.
-                                                              (line  39)
-* fftw_plan_r2r_3d <1>:                  Real-to-Real Transforms.
-                                                              (line  19)
-* fftw_plan_r2r_3d:                      More DFTs of Real Data.
-                                                              (line  39)
-* fftw_plan_with_nthreads:               Usage of Multi-threaded FFTW.
-                                                              (line  30)
-* FFTW_PRESERVE_INPUT <1>:               Planner Flags.       (line  65)
-* FFTW_PRESERVE_INPUT:                   One-Dimensional DFTs of Real Data.
-                                                              (line  57)
-* fftw_print_plan:                       Using Plans.         (line  65)
-* FFTW_R2HC <1>:                         Real-to-Real Transform Kinds.
-                                                              (line  20)
-* FFTW_R2HC:                             The Halfcomplex-format DFT.
-                                                              (line   6)
-* fftw_r2r_kind:                         More DFTs of Real Data.
-                                                              (line  51)
-* FFTW_REDFT00 <1>:                      Real-to-Real Transform Kinds.
-                                                              (line  31)
-* FFTW_REDFT00 <2>:                      Real-to-Real Transforms.
-                                                              (line  32)
-* FFTW_REDFT00:                          Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  35)
-* FFTW_REDFT01 <1>:                      Real-to-Real Transform Kinds.
-                                                              (line  38)
-* FFTW_REDFT01:                          Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  41)
-* FFTW_REDFT10 <1>:                      Real-to-Real Transform Kinds.
-                                                              (line  34)
-* FFTW_REDFT10:                          Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  38)
-* FFTW_REDFT11 <1>:                      Real-to-Real Transform Kinds.
-                                                              (line  42)
-* FFTW_REDFT11:                          Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  43)
-* FFTW_RODFT00 <1>:                      Real-to-Real Transform Kinds.
-                                                              (line  45)
-* FFTW_RODFT00:                          Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  45)
-* FFTW_RODFT01 <1>:                      Real-to-Real Transform Kinds.
-                                                              (line  51)
-* FFTW_RODFT01:                          Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  49)
-* FFTW_RODFT10 <1>:                      Real-to-Real Transform Kinds.
-                                                              (line  48)
-* FFTW_RODFT10:                          Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  47)
-* FFTW_RODFT11 <1>:                      Real-to-Real Transform Kinds.
-                                                              (line  54)
-* FFTW_RODFT11:                          Real even/odd DFTs (cosine/sine transforms).
-                                                              (line  51)
-* fftw_set_timelimit:                    Planner Flags.       (line  89)
-* FFTW_UNALIGNED <1>:                    FFTW Execution in Fortran.
-                                                              (line  52)
-* FFTW_UNALIGNED <2>:                    New-array Execute Functions.
-                                                              (line  27)
-* FFTW_UNALIGNED:                        Planner Flags.       (line  75)
-* FFTW_WISDOM_ONLY:                      Planner Flags.       (line  47)
-* ptrdiff_t:                             64-bit Guru Interface.
-                                                              (line  23)
-* R2HC:                                  The 1d Real-data DFT.
-                                                              (line  20)
-* REDFT00:                               1d Real-even DFTs (DCTs).
-                                                              (line  11)
-* REDFT01:                               1d Real-even DFTs (DCTs).
-                                                              (line  47)
-* REDFT10:                               1d Real-even DFTs (DCTs).
-                                                              (line  40)
-* REDFT11:                               1d Real-even DFTs (DCTs).
-                                                              (line  56)
-* RODFT00:                               1d Real-odd DFTs (DSTs).
-                                                              (line  11)
-* RODFT01:                               1d Real-odd DFTs (DSTs).
-                                                              (line  44)
-* RODFT10:                               1d Real-odd DFTs (DSTs).
-                                                              (line  38)
-* RODFT11:                               1d Real-odd DFTs (DSTs).
-                                                              (line  51)
-
-
+Indirect:
+fftw3.info-1: 1076
+fftw3.info-2: 297310
 \1f
 Tag Table:
-Node: Top\7f1072
-Node: Introduction\7f4047
-Node: Tutorial\7f10334
-Ref: Tutorial-Footnote-1\7f11578
-Node: Complex One-Dimensional DFTs\7f11672
-Node: Complex Multi-Dimensional DFTs\7f17292
-Node: One-Dimensional DFTs of Real Data\7f19861
-Node: Multi-Dimensional DFTs of Real Data\7f24102
-Node: More DFTs of Real Data\7f27674
-Node: The Halfcomplex-format DFT\7f31176
-Node: Real even/odd DFTs (cosine/sine transforms)\7f33785
-Ref: Real even/odd DFTs (cosine/sine transforms)-Footnote-1\7f39395
-Ref: Real even/odd DFTs (cosine/sine transforms)-Footnote-2\7f39584
-Node: The Discrete Hartley Transform\7f40519
-Ref: The Discrete Hartley Transform-Footnote-1\7f42863
-Node: Other Important Topics\7f43112
-Node: Data Alignment\7f43389
-Node: SIMD alignment and fftw_malloc\7f43890
-Node: Stack alignment on x86\7f45748
-Node: Multi-dimensional Array Format\7f47392
-Node: Row-major Format\7f48009
-Node: Column-major Format\7f49702
-Node: Fixed-size Arrays in C\7f50672
-Node: Dynamic Arrays in C\7f52108
-Node: Dynamic Arrays in C-The Wrong Way\7f53746
-Node: Words of Wisdom-Saving Plans\7f55493
-Node: Caveats in Using Wisdom\7f58100
-Node: FFTW Reference\7f60188
-Node: Data Types and Files\7f60676
-Node: Complex numbers\7f61108
-Node: Precision\7f62845
-Node: Memory Allocation\7f64028
-Node: Using Plans\7f65038
-Node: Basic Interface\7f67975
-Node: Complex DFTs\7f68474
-Node: Planner Flags\7f72273
-Node: Real-data DFTs\7f77605
-Node: Real-data DFT Array Format\7f82507
-Node: Real-to-Real Transforms\7f84762
-Node: Real-to-Real Transform Kinds\7f88742
-Node: Advanced Interface\7f91210
-Node: Advanced Complex DFTs\7f91950
-Node: Advanced Real-data DFTs\7f94697
-Node: Advanced Real-to-real Transforms\7f97024
-Node: Guru Interface\7f98130
-Node: Interleaved and split arrays\7f99053
-Node: Guru vector and transform sizes\7f100096
-Node: Guru Complex DFTs\7f102661
-Node: Guru Real-data DFTs\7f105497
-Node: Guru Real-to-real Transforms\7f108420
-Node: 64-bit Guru Interface\7f109739
-Node: New-array Execute Functions\7f112062
-Node: Wisdom\7f116060
-Node: Wisdom Export\7f116419
-Node: Wisdom Import\7f118019
-Node: Forgetting Wisdom\7f119797
-Node: Wisdom Utilities\7f120169
-Node: What FFTW Really Computes\7f121536
-Node: The 1d Discrete Fourier Transform (DFT)\7f122361
-Node: The 1d Real-data DFT\7f123720
-Node: 1d Real-even DFTs (DCTs)\7f125374
-Node: 1d Real-odd DFTs (DSTs)\7f128583
-Node: 1d Discrete Hartley Transforms (DHTs)\7f131525
-Node: Multi-dimensional Transforms\7f132201
-Node: Multi-threaded FFTW\7f134804
-Node: Installation and Supported Hardware/Software\7f136267
-Node: Usage of Multi-threaded FFTW\7f137704
-Node: How Many Threads to Use?\7f140344
-Node: Thread safety\7f141368
-Node: FFTW on the Cell Processor\7f143109
-Node: Cell Installation\7f144257
-Node: Cell Caveats\7f145272
-Node: FFTW Accuracy on Cell\7f146971
-Node: Calling FFTW from Fortran\7f148003
-Node: Fortran-interface routines\7f148825
-Ref: Fortran-interface routines-Footnote-1\7f152222
-Ref: Fortran-interface routines-Footnote-2\7f152425
-Node: FFTW Constants in Fortran\7f152558
-Node: FFTW Execution in Fortran\7f153621
-Node: Fortran Examples\7f156356
-Node: Wisdom of Fortran?\7f159768
-Node: Upgrading from FFTW version 2\7f161441
-Ref: Upgrading from FFTW version 2-Footnote-1\7f171057
-Node: Installation and Customization\7f171240
-Node: Installation on Unix\7f172882
-Node: Installation on non-Unix systems\7f181618
-Node: Cycle Counters\7f183840
-Node: Generating your own code\7f185590
-Node: Acknowledgments\7f187668
-Node: License and Copyright\7f191325
-Node: Concept Index\7f193169
-Node: Library Index\7f219446
+(Indirect)
+Node: Top\7f1076
+Node: Introduction\7f1749
+Node: Tutorial\7f8085
+Ref: Tutorial-Footnote-1\7f9329
+Node: Complex One-Dimensional DFTs\7f9423
+Node: Complex Multi-Dimensional DFTs\7f15179
+Ref: Complex Multi-Dimensional DFTs-Footnote-1\7f18611
+Node: One-Dimensional DFTs of Real Data\7f18746
+Node: Multi-Dimensional DFTs of Real Data\7f23191
+Node: More DFTs of Real Data\7f27121
+Node: The Halfcomplex-format DFT\7f30623
+Node: Real even/odd DFTs (cosine/sine transforms)\7f33232
+Ref: Real even/odd DFTs (cosine/sine transforms)-Footnote-1\7f38842
+Ref: Real even/odd DFTs (cosine/sine transforms)-Footnote-2\7f39031
+Node: The Discrete Hartley Transform\7f39964
+Ref: The Discrete Hartley Transform-Footnote-1\7f42149
+Node: Other Important Topics\7f42398
+Node: SIMD alignment and fftw_malloc\7f42691
+Node: Multi-dimensional Array Format\7f44951
+Node: Row-major Format\7f45572
+Node: Column-major Format\7f47265
+Node: Fixed-size Arrays in C\7f48349
+Node: Dynamic Arrays in C\7f49785
+Node: Dynamic Arrays in C-The Wrong Way\7f51423
+Node: Words of Wisdom-Saving Plans\7f53171
+Node: Caveats in Using Wisdom\7f55846
+Node: FFTW Reference\7f57934
+Node: Data Types and Files\7f58422
+Node: Complex numbers\7f58854
+Node: Precision\7f60595
+Node: Memory Allocation\7f62157
+Node: Using Plans\7f63728
+Node: Basic Interface\7f67608
+Ref: Basic Interface-Footnote-1\7f68352
+Node: Complex DFTs\7f68416
+Node: Planner Flags\7f72383
+Node: Real-data DFTs\7f77740
+Node: Real-data DFT Array Format\7f82736
+Node: Real-to-Real Transforms\7f84991
+Node: Real-to-Real Transform Kinds\7f88961
+Node: Advanced Interface\7f91429
+Node: Advanced Complex DFTs\7f92169
+Node: Advanced Real-data DFTs\7f96428
+Node: Advanced Real-to-real Transforms\7f98755
+Node: Guru Interface\7f99861
+Node: Interleaved and split arrays\7f100784
+Node: Guru vector and transform sizes\7f101827
+Node: Guru Complex DFTs\7f104392
+Node: Guru Real-data DFTs\7f107228
+Node: Guru Real-to-real Transforms\7f110151
+Node: 64-bit Guru Interface\7f111470
+Node: New-array Execute Functions\7f113793
+Node: Wisdom\7f117791
+Node: Wisdom Export\7f118150
+Node: Wisdom Import\7f120124
+Node: Forgetting Wisdom\7f122146
+Node: Wisdom Utilities\7f122518
+Node: What FFTW Really Computes\7f123885
+Node: The 1d Discrete Fourier Transform (DFT)\7f124710
+Node: The 1d Real-data DFT\7f126069
+Node: 1d Real-even DFTs (DCTs)\7f127723
+Node: 1d Real-odd DFTs (DSTs)\7f130932
+Node: 1d Discrete Hartley Transforms (DHTs)\7f133874
+Node: Multi-dimensional Transforms\7f134550
+Node: Multi-threaded FFTW\7f137153
+Node: Installation and Supported Hardware/Software\7f138622
+Node: Usage of Multi-threaded FFTW\7f140447
+Node: How Many Threads to Use?\7f143755
+Node: Thread safety\7f144779
+Node: Distributed-memory FFTW with MPI\7f146947
+Node: FFTW MPI Installation\7f149526
+Node: Linking and Initializing MPI FFTW\7f151318
+Node: 2d MPI example\7f152548
+Node: MPI Data Distribution\7f156784
+Node: Basic and advanced distribution interfaces\7f159662
+Node: Load balancing\7f164097
+Node: Transposed distributions\7f165783
+Node: One-dimensional distributions\7f169555
+Node: Multi-dimensional MPI DFTs of Real Data\7f172124
+Node: Other Multi-dimensional Real-data MPI Transforms\7f176772
+Node: FFTW MPI Transposes\7f178945
+Node: Basic distributed-transpose interface\7f179785
+Node: Advanced distributed-transpose interface\7f181969
+Node: An improved replacement for MPI_Alltoall\7f183257
+Node: FFTW MPI Wisdom\7f185233
+Ref: FFTW MPI Wisdom-Footnote-1\7f187976
+Node: Avoiding MPI Deadlocks\7f188889
+Node: FFTW MPI Performance Tips\7f189918
+Node: Combining MPI and Threads\7f191387
+Node: FFTW MPI Reference\7f194858
+Node: MPI Files and Data Types\7f195437
+Node: MPI Initialization\7f196433
+Node: Using MPI Plans\7f197532
+Node: MPI Data Distribution Functions\7f199358
+Node: MPI Plan Creation\7f204814
+Node: MPI Wisdom Communication\7f215491
+Node: FFTW MPI Fortran Interface\7f216417
+Ref: FFTW MPI Fortran Interface-Footnote-1\7f222446
+Node: Calling FFTW from Modern Fortran\7f222853
+Node: Overview of Fortran interface\7f224204
+Node: Extended and quadruple precision in Fortran\7f227656
+Node: Reversing array dimensions\7f229037
+Node: FFTW Fortran type reference\7f232572
+Node: Plan execution in Fortran\7f237059
+Node: Allocating aligned memory in Fortran\7f239955
+Node: Accessing the wisdom API from Fortran\7f243319
+Node: Wisdom File Export/Import from Fortran\7f244096
+Node: Wisdom String Export/Import from Fortran\7f245758
+Node: Wisdom Generic Export/Import from Fortran\7f247746
+Node: Defining an FFTW module\7f249976
+Node: Calling FFTW from Legacy Fortran\7f251045
+Node: Fortran-interface routines\7f252602
+Ref: Fortran-interface routines-Footnote-1\7f256260
+Ref: Fortran-interface routines-Footnote-2\7f256463
+Node: FFTW Constants in Fortran\7f256596
+Node: FFTW Execution in Fortran\7f257751
+Node: Fortran Examples\7f260507
+Node: Wisdom of Fortran?\7f263926
+Node: Upgrading from FFTW version 2\7f265606
+Ref: Upgrading from FFTW version 2-Footnote-1\7f275229
+Node: Installation and Customization\7f275412
+Node: Installation on Unix\7f277056
+Node: Installation on non-Unix systems\7f285719
+Node: Cycle Counters\7f287934
+Node: Generating your own code\7f289686
+Node: Acknowledgments\7f291721
+Node: License and Copyright\7f295441
+Node: Concept Index\7f297310
+Node: Library Index\7f333952
 \1f
 End Tag Table

diff --git a/util/X86LINUX64/share/info/fftw3.info-1 b/util/X86LINUX64/share/info/fftw3.info-1
new file mode 100644 (file)
index 0000000..2aa546c
--- /dev/null
+++ b/util/X86LINUX64/share/info/fftw3.info-1
@@ -0,0 +1,6280 @@
+This is fftw3.info, produced by makeinfo version 4.13 from fftw3.texi.
+
+This manual is for FFTW (version 3.3.3, 25 November 2012).
+
+   Copyright (C) 2003 Matteo Frigo.
+
+   Copyright (C) 2003 Massachusetts Institute of Technology.
+
+     Permission is granted to make and distribute verbatim copies of
+     this manual provided the copyright notice and this permission
+     notice are preserved on all copies.
+
+     Permission is granted to copy and distribute modified versions of
+     this manual under the conditions for verbatim copying, provided
+     that the entire resulting derived work is distributed under the
+     terms of a permission notice identical to this one.
+
+     Permission is granted to copy and distribute translations of this
+     manual into another language, under the above conditions for
+     modified versions, except that this permission notice may be
+     stated in a translation approved by the Free Software Foundation.
+
+INFO-DIR-SECTION Texinfo documentation system
+START-INFO-DIR-ENTRY
+* fftw3: (fftw3).      FFTW User's Manual.
+END-INFO-DIR-ENTRY
+
+\1f
+File: fftw3.info,  Node: Top,  Next: Introduction,  Prev: (dir),  Up: (dir)
+
+FFTW User Manual
+****************
+
+Welcome to FFTW, the Fastest Fourier Transform in the West.  FFTW is a
+collection of fast C routines to compute the discrete Fourier transform.
+This manual documents FFTW version 3.3.3.
+
+* Menu:
+
+* Introduction::
+* Tutorial::
+* Other Important Topics::
+* FFTW Reference::
+* Multi-threaded FFTW::
+* Distributed-memory FFTW with MPI::
+* Calling FFTW from Modern Fortran::
+* Calling FFTW from Legacy Fortran::
+* Upgrading from FFTW version 2::
+* Installation and Customization::
+* Acknowledgments::
+* License and Copyright::
+* Concept Index::
+* Library Index::
+
+\1f
+File: fftw3.info,  Node: Introduction,  Next: Tutorial,  Prev: Top,  Up: Top
+
+1 Introduction
+**************
+
+This manual documents version 3.3.3 of FFTW, the _Fastest Fourier
+Transform in the West_.  FFTW is a comprehensive collection of fast C
+routines for computing the discrete Fourier transform (DFT) and various
+special cases thereof.  
+   * FFTW computes the DFT of complex data, real data, even-   or
+     odd-symmetric real data (these symmetric transforms are usually
+     known as the discrete cosine or sine transform, respectively), and
+     the   discrete Hartley transform (DHT) of real data.
+
+   * The input data can have arbitrary length.         FFTW employs O(n
+     log n)  algorithms for all lengths, including        prime numbers.
+
+   * FFTW supports arbitrary multi-dimensional data.
+
+   * FFTW supports the SSE, SSE2, AVX, Altivec, and MIPS PS instruction
+           sets.
+
+   * FFTW includes parallel (multi-threaded) transforms        for
+     shared-memory systems.
+
+   * Starting with version 3.3, FFTW includes distributed-memory
+     parallel        transforms using MPI.
+
+   We assume herein that you are familiar with the properties and uses
+of the DFT that are relevant to your application.  Otherwise, see e.g.
+`The Fast Fourier Transform and Its Applications' by E. O. Brigham
+(Prentice-Hall, Englewood Cliffs, NJ, 1988).  Our web page
+(http://www.fftw.org) also has links to FFT-related information online.  
+
+   In order to use FFTW effectively, you need to learn one basic concept
+of FFTW's internal structure: FFTW does not use a fixed algorithm for
+computing the transform, but instead it adapts the DFT algorithm to
+details of the underlying hardware in order to maximize performance.
+Hence, the computation of the transform is split into two phases.
+First, FFTW's "planner" "learns" the fastest way to compute the
+transform on your machine.  The planner produces a data structure
+called a "plan" that contains this information.  Subsequently, the plan
+is "executed" to transform the array of input data as dictated by the
+plan.  The plan can be reused as many times as needed.  In typical
+high-performance applications, many transforms of the same size are
+computed and, consequently, a relatively expensive initialization of
+this sort is acceptable.  On the other hand, if you need a single
+transform of a given size, the one-time cost of the planner becomes
+significant.  For this case, FFTW provides fast planners based on
+heuristics or on previously computed plans.
+
+   FFTW supports transforms of data with arbitrary length, rank,
+multiplicity, and a general memory layout.  In simple cases, however,
+this generality may be unnecessary and confusing.  Consequently, we
+organized the interface to FFTW into three levels of increasing
+generality.
+   * The "basic interface" computes a single       transform of
+     contiguous data.
+
+   * The "advanced interface" computes transforms       of multiple or
+     strided arrays.
+
+   * The "guru interface" supports the most general data       layouts,
+     multiplicities, and strides.
+   We expect that most users will be best served by the basic interface,
+whereas the guru interface requires careful attention to the
+documentation to avoid problems.  
+
+   Besides the automatic performance adaptation performed by the
+planner, it is also possible for advanced users to customize FFTW
+manually.  For example, if code space is a concern, we provide a tool
+that links only the subset of FFTW needed by your application.
+Conversely, you may need to extend FFTW because the standard
+distribution is not sufficient for your needs.  For example, the
+standard FFTW distribution works most efficiently for arrays whose size
+can be factored into small primes (2, 3, 5, and 7), and otherwise it
+uses a slower general-purpose routine.  If you need efficient
+transforms of other sizes, you can use FFTW's code generator, which
+produces fast C programs ("codelets") for any particular array size you
+may care about.  For example, if you need transforms of size 513 = 19 x
+3^3, you can customize FFTW to support the factor 19 efficiently.
+
+   For more information regarding FFTW, see the paper, "The Design and
+Implementation of FFTW3," by M. Frigo and S. G. Johnson, which was an
+invited paper in `Proc. IEEE' 93 (2), p. 216 (2005).  The code
+generator is described in the paper "A fast Fourier transform compiler", by
+M. Frigo, in the `Proceedings of the 1999 ACM SIGPLAN Conference on
+Programming Language Design and Implementation (PLDI), Atlanta,
+Georgia, May 1999'.  These papers, along with the latest version of
+FFTW, the FAQ, benchmarks, and other links, are available at the FFTW
+home page (http://www.fftw.org).
+
+   The current version of FFTW incorporates many good ideas from the
+past thirty years of FFT literature.  In one way or another, FFTW uses
+the Cooley-Tukey algorithm, the prime factor algorithm, Rader's
+algorithm for prime sizes, and a split-radix algorithm (with a
+"conjugate-pair" variation pointed out to us by Dan Bernstein).  FFTW's
+code generator also produces new algorithms that we do not completely
+understand.  The reader is referred to the cited papers for the
+appropriate references.
+
+   The rest of this manual is organized as follows.  We first discuss
+the sequential (single-processor) implementation.  We start by
+describing the basic interface/features of FFTW in *note Tutorial::.
+Next, *note Other Important Topics:: discusses data alignment (*note
+SIMD alignment and fftw_malloc::), the storage scheme of
+multi-dimensional arrays (*note Multi-dimensional Array Format::), and
+FFTW's mechanism for storing plans on disk (*note Words of
+Wisdom-Saving Plans::).  Next, *note FFTW Reference:: provides
+comprehensive documentation of all FFTW's features.  Parallel
+transforms are discussed in their own chapters: *note Multi-threaded
+FFTW:: and *note Distributed-memory FFTW with MPI::.  Fortran
+programmers can also use FFTW, as described in *note Calling FFTW from
+Legacy Fortran:: and *note Calling FFTW from Modern Fortran::.  *note
+Installation and Customization:: explains how to install FFTW in your
+computer system and how to adapt FFTW to your needs.  License and
+copyright information is given in *note License and Copyright::.
+Finally, we thank all the people who helped us in *note
+Acknowledgments::.
+
+\1f
+File: fftw3.info,  Node: Tutorial,  Next: Other Important Topics,  Prev: Introduction,  Up: Top
+
+2 Tutorial
+**********
+
+* Menu:
+
+* Complex One-Dimensional DFTs::
+* Complex Multi-Dimensional DFTs::
+* One-Dimensional DFTs of Real Data::
+* Multi-Dimensional DFTs of Real Data::
+* More DFTs of Real Data::
+
+   This chapter describes the basic usage of FFTW, i.e., how to compute the
+Fourier transform of a single array.  This chapter tells the truth, but
+not the _whole_ truth. Specifically, FFTW implements additional
+routines and flags that are not documented here, although in many cases
+we try to indicate where added capabilities exist.  For more complete
+information, see *note FFTW Reference::.  (Note that you need to
+compile and install FFTW before you can use it in a program.  For the
+details of the installation, see *note Installation and
+Customization::.)
+
+   We recommend that you read this tutorial in order.(1)  At the least,
+read the first section (*note Complex One-Dimensional DFTs::) before
+reading any of the others, even if your main interest lies in one of
+the other transform types.
+
+   Users of FFTW version 2 and earlier may also want to read *note
+Upgrading from FFTW version 2::.
+
+   ---------- Footnotes ----------
+
+   (1) You can read the tutorial in bit-reversed order after computing
+your first transform.
+
+\1f
+File: fftw3.info,  Node: Complex One-Dimensional DFTs,  Next: Complex Multi-Dimensional DFTs,  Prev: Tutorial,  Up: Tutorial
+
+2.1 Complex One-Dimensional DFTs
+================================
+
+     Plan: To bother about the best method of accomplishing an
+     accidental result.  [Ambrose Bierce, `The Enlarged Devil's
+     Dictionary'.]  
+
+   The basic usage of FFTW to compute a one-dimensional DFT of size `N'
+is simple, and it typically looks something like this code:
+
+     #include <fftw3.h>
+     ...
+     {
+         fftw_complex *in, *out;
+         fftw_plan p;
+         ...
+         in = (fftw_complex*) fftw_malloc(sizeof(fftw_complex) * N);
+         out = (fftw_complex*) fftw_malloc(sizeof(fftw_complex) * N);
+         p = fftw_plan_dft_1d(N, in, out, FFTW_FORWARD, FFTW_ESTIMATE);
+         ...
+         fftw_execute(p); /* repeat as needed */
+         ...
+         fftw_destroy_plan(p);
+         fftw_free(in); fftw_free(out);
+     }
+
+   You must link this code with the `fftw3' library.  On Unix systems,
+link with `-lfftw3 -lm'.
+
+   The example code first allocates the input and output arrays.  You
+can allocate them in any way that you like, but we recommend using
+`fftw_malloc', which behaves like `malloc' except that it properly
+aligns the array when SIMD instructions (such as SSE and Altivec) are
+available (*note SIMD alignment and fftw_malloc::). [Alternatively, we
+provide a convenient wrapper function `fftw_alloc_complex(N)' which has
+the same effect.]  
+
+   The data is an array of type `fftw_complex', which is by default a
+`double[2]' composed of the real (`in[i][0]') and imaginary
+(`in[i][1]') parts of a complex number.  
+
+   The next step is to create a "plan", which is an object that
+contains all the data that FFTW needs to compute the FFT.  This
+function creates the plan:
+
+     fftw_plan fftw_plan_dft_1d(int n, fftw_complex *in, fftw_complex *out,
+                                int sign, unsigned flags);
+   
+   The first argument, `n', is the size of the transform you are trying
+to compute.  The size `n' can be any positive integer, but sizes that
+are products of small factors are transformed most efficiently
+(although prime sizes still use an O(n log n)  algorithm).
+
+   The next two arguments are pointers to the input and output arrays of
+the transform.  These pointers can be equal, indicating an "in-place"
+transform.  
+
+   The fourth argument, `sign', can be either `FFTW_FORWARD' (`-1') or
+`FFTW_BACKWARD' (`+1'), and indicates the direction of the transform
+you are interested in; technically, it is the sign of the exponent in
+the transform.
+
+   The `flags' argument is usually either `FFTW_MEASURE' or `FFTW_ESTIMATE'.
+`FFTW_MEASURE' instructs FFTW to run and measure the execution time of
+several FFTs in order to find the best way to compute the transform of
+size `n'.  This process takes some time (usually a few seconds),
+depending on your machine and on the size of the transform.
+`FFTW_ESTIMATE', on the contrary, does not run any computation and just
+builds a reasonable plan that is probably sub-optimal.  In short, if
+your program performs many transforms of the same size and
+initialization time is not important, use `FFTW_MEASURE'; otherwise use
+the estimate.
+
+   _You must create the plan before initializing the input_, because
+`FFTW_MEASURE' overwrites the `in'/`out' arrays.  (Technically,
+`FFTW_ESTIMATE' does not touch your arrays, but you should always
+create plans first just to be sure.)
+
+   Once the plan has been created, you can use it as many times as you
+like for transforms on the specified `in'/`out' arrays, computing the
+actual transforms via `fftw_execute(plan)':
+     void fftw_execute(const fftw_plan plan);
+   
+   The DFT results are stored in-order in the array `out', with the
+zero-frequency (DC) component in `out[0]'.  If `in != out', the
+transform is "out-of-place" and the input array `in' is not modified.
+Otherwise, the input array is overwritten with the transform.
+
+   If you want to transform a _different_ array of the same size, you
+can create a new plan with `fftw_plan_dft_1d' and FFTW automatically
+reuses the information from the previous plan, if possible.
+Alternatively, with the "guru" interface you can apply a given plan to
+a different array, if you are careful.  *Note FFTW Reference::.
+
+   When you are done with the plan, you deallocate it by calling
+`fftw_destroy_plan(plan)':
+     void fftw_destroy_plan(fftw_plan plan);
+   If you allocate an array with `fftw_malloc()' you must deallocate it
+with `fftw_free()'.  Do not use `free()' or, heaven forbid, `delete'.  
+
+   FFTW computes an _unnormalized_ DFT.  Thus, computing a forward
+followed by a backward transform (or vice versa) results in the original
+array scaled by `n'.  For the definition of the DFT, see *note What
+FFTW Really Computes::.  
+
+   If you have a C compiler, such as `gcc', that supports the C99
+standard, and you `#include <complex.h>' _before_ `<fftw3.h>', then
+`fftw_complex' is the native double-precision complex type and you can
+manipulate it with ordinary arithmetic.  Otherwise, FFTW defines its
+own complex type, which is bit-compatible with the C99 complex type.
+*Note Complex numbers::.  (The C++ `<complex>' template class may also
+be usable via a typecast.)  
+
+   To use single or long-double precision versions of FFTW, replace the
+`fftw_' prefix by `fftwf_' or `fftwl_' and link with `-lfftw3f' or
+`-lfftw3l', but use the _same_ `<fftw3.h>' header file.  
+
+   Many more flags exist besides `FFTW_MEASURE' and `FFTW_ESTIMATE'.
+For example, use `FFTW_PATIENT' if you're willing to wait even longer
+for a possibly even faster plan (*note FFTW Reference::).  You can also
+save plans for future use, as described by *note Words of Wisdom-Saving
+Plans::.
+
+\1f
+File: fftw3.info,  Node: Complex Multi-Dimensional DFTs,  Next: One-Dimensional DFTs of Real Data,  Prev: Complex One-Dimensional DFTs,  Up: Tutorial
+
+2.2 Complex Multi-Dimensional DFTs
+==================================
+
+Multi-dimensional transforms work much the same way as one-dimensional
+transforms: you allocate arrays of `fftw_complex' (preferably using
+`fftw_malloc'), create an `fftw_plan', execute it as many times as you
+want with `fftw_execute(plan)', and clean up with
+`fftw_destroy_plan(plan)' (and `fftw_free').
+
+   FFTW provides two routines for creating plans for 2d and 3d
+transforms, and one routine for creating plans of arbitrary
+dimensionality.  The 2d and 3d routines have the following signature:
+     fftw_plan fftw_plan_dft_2d(int n0, int n1,
+                                fftw_complex *in, fftw_complex *out,
+                                int sign, unsigned flags);
+     fftw_plan fftw_plan_dft_3d(int n0, int n1, int n2,
+                                fftw_complex *in, fftw_complex *out,
+                                int sign, unsigned flags);
+   
+   These routines create plans for `n0' by `n1' two-dimensional (2d)
+transforms and `n0' by `n1' by `n2' 3d transforms, respectively.  All
+of these transforms operate on contiguous arrays in the C-standard
+"row-major" order, so that the last dimension has the fastest-varying
+index in the array.  This layout is described further in *note
+Multi-dimensional Array Format::.
+
+   FFTW can also compute transforms of higher dimensionality.  In order
+to avoid confusion between the various meanings of the the word
+"dimension", we use the term _rank_ to denote the number of independent
+indices in an array.(1)  For example, we say that a 2d transform has
+rank 2, a 3d transform has rank 3, and so on.  You can plan transforms
+of arbitrary rank by means of the following function:
+
+     fftw_plan fftw_plan_dft(int rank, const int *n,
+                             fftw_complex *in, fftw_complex *out,
+                             int sign, unsigned flags);
+   
+   Here, `n' is a pointer to an array `n[rank]' denoting an `n[0]' by
+`n[1]' by ... by `n[rank-1]' transform.  Thus, for example, the call
+     fftw_plan_dft_2d(n0, n1, in, out, sign, flags);
+   is equivalent to the following code fragment:
+     int n[2];
+     n[0] = n0;
+     n[1] = n1;
+     fftw_plan_dft(2, n, in, out, sign, flags);
+   `fftw_plan_dft' is not restricted to 2d and 3d transforms, however,
+but it can plan transforms of arbitrary rank.
+
+   You may have noticed that all the planner routines described so far
+have overlapping functionality.  For example, you can plan a 1d or 2d
+transform by using `fftw_plan_dft' with a `rank' of `1' or `2', or even
+by calling `fftw_plan_dft_3d' with `n0' and/or `n1' equal to `1' (with
+no loss in efficiency).  This pattern continues, and FFTW's planning
+routines in general form a "partial order," sequences of interfaces
+with strictly increasing generality but correspondingly greater
+complexity.
+
+   `fftw_plan_dft' is the most general complex-DFT routine that we
+describe in this tutorial, but there are also the advanced and guru
+interfaces, which allow one to efficiently combine multiple/strided
+transforms into a single FFTW plan, transform a subset of a larger
+multi-dimensional array, and/or to handle more general complex-number
+formats.  For more information, see *note FFTW Reference::.
+
+   ---------- Footnotes ----------
+
+   (1) The term "rank" is commonly used in the APL, FORTRAN, and Common
+Lisp traditions, although it is not so common in the C world.
+
+\1f
+File: fftw3.info,  Node: One-Dimensional DFTs of Real Data,  Next: Multi-Dimensional DFTs of Real Data,  Prev: Complex Multi-Dimensional DFTs,  Up: Tutorial
+
+2.3 One-Dimensional DFTs of Real Data
+=====================================
+
+In many practical applications, the input data `in[i]' are purely real
+numbers, in which case the DFT output satisfies the "Hermitian" redundancy:
+`out[i]' is the conjugate of `out[n-i]'.  It is possible to take
+advantage of these circumstances in order to achieve roughly a factor
+of two improvement in both speed and memory usage.
+
+   In exchange for these speed and space advantages, the user sacrifices
+some of the simplicity of FFTW's complex transforms. First of all, the
+input and output arrays are of _different sizes and types_: the input
+is `n' real numbers, while the output is `n/2+1' complex numbers (the
+non-redundant outputs); this also requires slight "padding" of the
+input array for in-place transforms.  Second, the inverse transform
+(complex to real) has the side-effect of _overwriting its input array_,
+by default.  Neither of these inconveniences should pose a serious
+problem for users, but it is important to be aware of them.
+
+   The routines to perform real-data transforms are almost the same as
+those for complex transforms: you allocate arrays of `double' and/or
+`fftw_complex' (preferably using `fftw_malloc' or
+`fftw_alloc_complex'), create an `fftw_plan', execute it as many times
+as you want with `fftw_execute(plan)', and clean up with
+`fftw_destroy_plan(plan)' (and `fftw_free').  The only differences are
+that the input (or output) is of type `double' and there are new
+routines to create the plan.  In one dimension:
+
+     fftw_plan fftw_plan_dft_r2c_1d(int n, double *in, fftw_complex *out,
+                                    unsigned flags);
+     fftw_plan fftw_plan_dft_c2r_1d(int n, fftw_complex *in, double *out,
+                                    unsigned flags);
+   
+   for the real input to complex-Hermitian output ("r2c") and
+complex-Hermitian input to real output ("c2r") transforms.  Unlike the
+complex DFT planner, there is no `sign' argument.  Instead, r2c DFTs
+are always `FFTW_FORWARD' and c2r DFTs are always `FFTW_BACKWARD'.  (For
+single/long-double precision `fftwf' and `fftwl', `double' should be
+replaced by `float' and `long double', respectively.)  
+
+   Here, `n' is the "logical" size of the DFT, not necessarily the
+physical size of the array.  In particular, the real (`double') array
+has `n' elements, while the complex (`fftw_complex') array has `n/2+1'
+elements (where the division is rounded down).  For an in-place
+transform, `in' and `out' are aliased to the same array, which must be
+big enough to hold both; so, the real array would actually have
+`2*(n/2+1)' elements, where the elements beyond the first `n' are
+unused padding.  (Note that this is very different from the concept of
+"zero-padding" a transform to a larger length, which changes the
+logical size of the DFT by actually adding new input data.)  The kth
+element of the complex array is exactly the same as the kth element of
+the corresponding complex DFT.  All positive `n' are supported;
+products of small factors are most efficient, but an O(n log n)
+algorithm is used even for prime sizes.
+
+   As noted above, the c2r transform destroys its input array even for
+out-of-place transforms.  This can be prevented, if necessary, by
+including `FFTW_PRESERVE_INPUT' in the `flags', with unfortunately some
+sacrifice in performance.  This flag is also not currently supported
+for multi-dimensional real DFTs (next section).
+
+   Readers familiar with DFTs of real data will recall that the 0th (the
+"DC") and `n/2'-th (the "Nyquist" frequency, when `n' is even) elements
+of the complex output are purely real.  Some implementations therefore
+store the Nyquist element where the DC imaginary part would go, in
+order to make the input and output arrays the same size.  Such packing,
+however, does not generalize well to multi-dimensional transforms, and
+the space savings are miniscule in any case; FFTW does not support it.
+
+   An alternative interface for one-dimensional r2c and c2r DFTs can be
+found in the `r2r' interface (*note The Halfcomplex-format DFT::), with
+"halfcomplex"-format output that _is_ the same size (and type) as the
+input array.  That interface, although it is not very useful for
+multi-dimensional transforms, may sometimes yield better performance.
+
+\1f
+File: fftw3.info,  Node: Multi-Dimensional DFTs of Real Data,  Next: More DFTs of Real Data,  Prev: One-Dimensional DFTs of Real Data,  Up: Tutorial
+
+2.4 Multi-Dimensional DFTs of Real Data
+=======================================
+
+Multi-dimensional DFTs of real data use the following planner routines:
+
+     fftw_plan fftw_plan_dft_r2c_2d(int n0, int n1,
+                                    double *in, fftw_complex *out,
+                                    unsigned flags);
+     fftw_plan fftw_plan_dft_r2c_3d(int n0, int n1, int n2,
+                                    double *in, fftw_complex *out,
+                                    unsigned flags);
+     fftw_plan fftw_plan_dft_r2c(int rank, const int *n,
+                                 double *in, fftw_complex *out,
+                                 unsigned flags);
+   
+   as well as the corresponding `c2r' routines with the input/output
+types swapped.  These routines work similarly to their complex
+analogues, except for the fact that here the complex output array is cut
+roughly in half and the real array requires padding for in-place
+transforms (as in 1d, above).
+
+   As before, `n' is the logical size of the array, and the
+consequences of this on the the format of the complex arrays deserve
+careful attention.  Suppose that the real data has dimensions n[0] x
+n[1] x n[2] x ... x n[d-1]  (in row-major order).  Then, after an r2c
+transform, the output is an n[0] x n[1] x n[2] x ... x (n[d-1]/2 + 1)
+array of `fftw_complex' values in row-major order, corresponding to
+slightly over half of the output of the corresponding complex DFT.
+(The division is rounded down.)  The ordering of the data is otherwise
+exactly the same as in the complex-DFT case.
+
+   For out-of-place transforms, this is the end of the story: the real
+data is stored as a row-major array of size n[0] x n[1] x n[2] x ... x
+n[d-1]  and the complex data is stored as a row-major array of size
+n[0] x n[1] x n[2] x ... x (n[d-1]/2 + 1) .
+
+   For in-place transforms, however, extra padding of the real-data
+array is necessary because the complex array is larger than the real
+array, and the two arrays share the same memory locations.  Thus, for
+in-place transforms, the final dimension of the real-data array must be
+padded with extra values to accommodate the size of the complex
+data--two values if the last dimension is even and one if it is odd.  That
+is, the last dimension of the real data must physically contain 2 *
+(n[d-1]/2+1) `double' values (exactly enough to hold the complex data).
+This physical array size does not, however, change the _logical_ array
+size--only n[d-1] values are actually stored in the last dimension, and
+n[d-1] is the last dimension passed to the plan-creation routine.
+
+   For example, consider the transform of a two-dimensional real array
+of size `n0' by `n1'.  The output of the r2c transform is a
+two-dimensional complex array of size `n0' by `n1/2+1', where the `y'
+dimension has been cut nearly in half because of redundancies in the
+output.  Because `fftw_complex' is twice the size of `double', the
+output array is slightly bigger than the input array.  Thus, if we want
+to compute the transform in place, we must _pad_ the input array so
+that it is of size `n0' by `2*(n1/2+1)'.  If `n1' is even, then there
+are two padding elements at the end of each row (which need not be
+initialized, as they are only used for output).
+
+   These transforms are unnormalized, so an r2c followed by a c2r
+transform (or vice versa) will result in the original data scaled by
+the number of real data elements--that is, the product of the (logical)
+dimensions of the real data.  
+
+   (Because the last dimension is treated specially, if it is equal to
+`1' the transform is _not_ equivalent to a lower-dimensional r2c/c2r
+transform.  In that case, the last complex dimension also has size `1'
+(`=1/2+1'), and no advantage is gained over the complex transforms.)
+
+\1f
+File: fftw3.info,  Node: More DFTs of Real Data,  Prev: Multi-Dimensional DFTs of Real Data,  Up: Tutorial
+
+2.5 More DFTs of Real Data
+==========================
+
+* Menu:
+
+* The Halfcomplex-format DFT::
+* Real even/odd DFTs (cosine/sine transforms)::
+* The Discrete Hartley Transform::
+
+   FFTW supports several other transform types via a unified "r2r"
+(real-to-real) interface, so called because it takes a real (`double')
+array and outputs a real array of the same size.  These r2r transforms
+currently fall into three categories: DFTs of real input and
+complex-Hermitian output in halfcomplex format, DFTs of real input with
+even/odd symmetry (a.k.a. discrete cosine/sine transforms, DCTs/DSTs),
+and discrete Hartley transforms (DHTs), all described in more detail by
+the following sections.
+
+   The r2r transforms follow the by now familiar interface of creating
+an `fftw_plan', executing it with `fftw_execute(plan)', and destroying
+it with `fftw_destroy_plan(plan)'.  Furthermore, all r2r transforms
+share the same planner interface:
+
+     fftw_plan fftw_plan_r2r_1d(int n, double *in, double *out,
+                                fftw_r2r_kind kind, unsigned flags);
+     fftw_plan fftw_plan_r2r_2d(int n0, int n1, double *in, double *out,
+                                fftw_r2r_kind kind0, fftw_r2r_kind kind1,
+                                unsigned flags);
+     fftw_plan fftw_plan_r2r_3d(int n0, int n1, int n2,
+                                double *in, double *out,
+                                fftw_r2r_kind kind0,
+                                fftw_r2r_kind kind1,
+                                fftw_r2r_kind kind2,
+                                unsigned flags);
+     fftw_plan fftw_plan_r2r(int rank, const int *n, double *in, double *out,
+                             const fftw_r2r_kind *kind, unsigned flags);
+   
+   Just as for the complex DFT, these plan 1d/2d/3d/multi-dimensional
+transforms for contiguous arrays in row-major order, transforming (real)
+input to output of the same size, where `n' specifies the _physical_
+dimensions of the arrays.  All positive `n' are supported (with the
+exception of `n=1' for the `FFTW_REDFT00' kind, noted in the real-even
+subsection below); products of small factors are most efficient
+(factorizing `n-1' and `n+1' for `FFTW_REDFT00' and `FFTW_RODFT00'
+kinds, described below), but an O(n log n)  algorithm is used even for
+prime sizes.
+
+   Each dimension has a "kind" parameter, of type `fftw_r2r_kind',
+specifying the kind of r2r transform to be used for that dimension.  (In
+the case of `fftw_plan_r2r', this is an array `kind[rank]' where
+`kind[i]' is the transform kind for the dimension `n[i]'.)  The kind
+can be one of a set of predefined constants, defined in the following
+subsections.
+
+   In other words, FFTW computes the separable product of the specified
+r2r transforms over each dimension, which can be used e.g. for partial
+differential equations with mixed boundary conditions.  (For some r2r
+kinds, notably the halfcomplex DFT and the DHT, such a separable
+product is somewhat problematic in more than one dimension, however, as
+is described below.)
+
+   In the current version of FFTW, all r2r transforms except for the
+halfcomplex type are computed via pre- or post-processing of
+halfcomplex transforms, and they are therefore not as fast as they
+could be.  Since most other general DCT/DST codes employ a similar
+algorithm, however, FFTW's implementation should provide at least
+competitive performance.
+
+\1f
+File: fftw3.info,  Node: The Halfcomplex-format DFT,  Next: Real even/odd DFTs (cosine/sine transforms),  Prev: More DFTs of Real Data,  Up: More DFTs of Real Data
+
+2.5.1 The Halfcomplex-format DFT
+--------------------------------
+
+An r2r kind of `FFTW_R2HC' ("r2hc") corresponds to an r2c DFT (*note
+One-Dimensional DFTs of Real Data::) but with "halfcomplex" format
+output, and may sometimes be faster and/or more convenient than the
+latter.  The inverse "hc2r" transform is of kind `FFTW_HC2R'.  This
+consists of the non-redundant half of the complex output for a 1d
+real-input DFT of size `n', stored as a sequence of `n' real numbers
+(`double') in the format:
+
+   r0, r1, r2, r(n/2), i((n+1)/2-1), ..., i2, i1
+
+   Here, rk is the real part of the kth output, and ik is the imaginary
+part.  (Division by 2 is rounded down.) For a halfcomplex array
+`hc[n]', the kth component thus has its real part in `hc[k]' and its
+imaginary part in `hc[n-k]', with the exception of `k' `==' `0' or
+`n/2' (the latter only if `n' is even)--in these two cases, the
+imaginary part is zero due to symmetries of the real-input DFT, and is
+not stored.  Thus, the r2hc transform of `n' real values is a
+halfcomplex array of length `n', and vice versa for hc2r.  
+
+   Aside from the differing format, the output of
+`FFTW_R2HC'/`FFTW_HC2R' is otherwise exactly the same as for the
+corresponding 1d r2c/c2r transform (i.e. `FFTW_FORWARD'/`FFTW_BACKWARD'
+transforms, respectively).  Recall that these transforms are
+unnormalized, so r2hc followed by hc2r will result in the original data
+multiplied by `n'.  Furthermore, like the c2r transform, an
+out-of-place hc2r transform will _destroy its input_ array.
+
+   Although these halfcomplex transforms can be used with the
+multi-dimensional r2r interface, the interpretation of such a separable
+product of transforms along each dimension is problematic.  For example,
+consider a two-dimensional `n0' by `n1', r2hc by r2hc transform planned
+by `fftw_plan_r2r_2d(n0, n1, in, out, FFTW_R2HC, FFTW_R2HC,
+FFTW_MEASURE)'.  Conceptually, FFTW first transforms the rows (of size
+`n1') to produce halfcomplex rows, and then transforms the columns (of
+size `n0').  Half of these column transforms, however, are of imaginary
+parts, and should therefore be multiplied by i and combined with the
+r2hc transforms of the real columns to produce the 2d DFT amplitudes;
+FFTW's r2r transform does _not_ perform this combination for you.
+Thus, if a multi-dimensional real-input/output DFT is required, we
+recommend using the ordinary r2c/c2r interface (*note Multi-Dimensional
+DFTs of Real Data::).
+
+\1f
+File: fftw3.info,  Node: Real even/odd DFTs (cosine/sine transforms),  Next: The Discrete Hartley Transform,  Prev: The Halfcomplex-format DFT,  Up: More DFTs of Real Data
+
+2.5.2 Real even/odd DFTs (cosine/sine transforms)
+-------------------------------------------------
+
+The Fourier transform of a real-even function f(-x) = f(x) is
+real-even, and i times the Fourier transform of a real-odd function
+f(-x) = -f(x) is real-odd.  Similar results hold for a discrete Fourier
+transform, and thus for these symmetries the need for complex
+inputs/outputs is entirely eliminated.  Moreover, one gains a factor of
+two in speed/space from the fact that the data are real, and an
+additional factor of two from the even/odd symmetry: only the
+non-redundant (first) half of the array need be stored.  The result is
+the real-even DFT ("REDFT") and the real-odd DFT ("RODFT"), also known
+as the discrete cosine and sine transforms ("DCT" and "DST"),
+respectively.  
+
+   (In this section, we describe the 1d transforms; multi-dimensional
+transforms are just a separable product of these transforms operating
+along each dimension.)
+
+   Because of the discrete sampling, one has an additional choice: is
+the data even/odd around a sampling point, or around the point halfway
+between two samples?  The latter corresponds to _shifting_ the samples
+by _half_ an interval, and gives rise to several transform variants
+denoted by REDFTab and RODFTab: a and b are 0 or 1, and indicate
+whether the input (a) and/or output (b) are shifted by half a sample (1
+means it is shifted).  These are also known as types I-IV of the DCT
+and DST, and all four types are supported by FFTW's r2r interface.(1)
+
+   The r2r kinds for the various REDFT and RODFT types supported by
+FFTW, along with the boundary conditions at both ends of the _input_
+array (`n' real numbers `in[j=0..n-1]'), are:
+
+   * `FFTW_REDFT00' (DCT-I): even around j=0 and even around j=n-1.  
+
+   * `FFTW_REDFT10' (DCT-II, "the" DCT): even around j=-0.5 and even
+     around j=n-0.5.  
+
+   * `FFTW_REDFT01' (DCT-III, "the" IDCT): even around j=0 and odd
+     around j=n.  
+
+   * `FFTW_REDFT11' (DCT-IV): even around j=-0.5 and odd around j=n-0.5.  
+
+   * `FFTW_RODFT00' (DST-I): odd around j=-1 and odd around j=n.  
+
+   * `FFTW_RODFT10' (DST-II): odd around j=-0.5 and odd around j=n-0.5.  
+
+   * `FFTW_RODFT01' (DST-III): odd around j=-1 and even around j=n-1.  
+
+   * `FFTW_RODFT11' (DST-IV): odd around j=-0.5 and even around j=n-0.5.  
+
+
+   Note that these symmetries apply to the "logical" array being
+transformed; *there are no constraints on your physical input data*.
+So, for example, if you specify a size-5 REDFT00 (DCT-I) of the data
+abcde, it corresponds to the DFT of the logical even array abcdedcb of
+size 8.  A size-4 REDFT10 (DCT-II) of the data abcd corresponds to the
+size-8 logical DFT of the even array abcddcba, shifted by half a sample.
+
+   All of these transforms are invertible.  The inverse of R*DFT00 is
+R*DFT00; of R*DFT10 is R*DFT01 and vice versa (these are often called
+simply "the" DCT and IDCT, respectively); and of R*DFT11 is R*DFT11.
+However, the transforms computed by FFTW are unnormalized, exactly like
+the corresponding real and complex DFTs, so computing a transform
+followed by its inverse yields the original array scaled by N, where N
+is the _logical_ DFT size.  For REDFT00, N=2(n-1); for RODFT00,
+N=2(n+1); otherwise, N=2n.  
+
+   Note that the boundary conditions of the transform output array are
+given by the input boundary conditions of the inverse transform.  Thus,
+the above transforms are all inequivalent in terms of input/output
+boundary conditions, even neglecting the 0.5 shift difference.
+
+   FFTW is most efficient when N is a product of small factors; note
+that this _differs_ from the factorization of the physical size `n' for
+REDFT00 and RODFT00!  There is another oddity: `n=1' REDFT00 transforms
+correspond to N=0, and so are _not defined_ (the planner will return
+`NULL').  Otherwise, any positive `n' is supported.
+
+   For the precise mathematical definitions of these transforms as used
+by FFTW, see *note What FFTW Really Computes::.  (For people accustomed
+to the DCT/DST, FFTW's definitions have a coefficient of 2 in front of
+the cos/sin functions so that they correspond precisely to an even/odd
+DFT of size N.  Some authors also include additional multiplicative
+factors of sqrt(2) for selected inputs and outputs; this makes the
+transform orthogonal, but sacrifices the direct equivalence to a
+symmetric DFT.)
+
+Which type do you need?
+.......................
+
+Since the required flavor of even/odd DFT depends upon your problem,
+you are the best judge of this choice, but we can make a few comments
+on relative efficiency to help you in your selection.  In particular,
+R*DFT01 and R*DFT10 tend to be slightly faster than R*DFT11 (especially
+for odd sizes), while the R*DFT00 transforms are sometimes
+significantly slower (especially for even sizes).(2)
+
+   Thus, if only the boundary conditions on the transform inputs are
+specified, we generally recommend R*DFT10 over R*DFT00 and R*DFT01 over
+R*DFT11 (unless the half-sample shift or the self-inverse property is
+significant for your problem).
+
+   If performance is important to you and you are using only small sizes
+(say n<200), e.g. for multi-dimensional transforms, then you might
+consider generating hard-coded transforms of those sizes and types that
+you are interested in (*note Generating your own code::).
+
+   We are interested in hearing what types of symmetric transforms you
+find most useful.
+
+   ---------- Footnotes ----------
+
+   (1) There are also type V-VIII transforms, which correspond to a
+logical DFT of _odd_ size N, independent of whether the physical size
+`n' is odd, but we do not support these variants.
+
+   (2) R*DFT00 is sometimes slower in FFTW because we discovered that
+the standard algorithm for computing this by a pre/post-processed real
+DFT--the algorithm used in FFTPACK, Numerical Recipes, and other
+sources for decades now--has serious numerical problems: it already
+loses several decimal places of accuracy for 16k sizes.  There seem to
+be only two alternatives in the literature that do not suffer
+similarly: a recursive decomposition into smaller DCTs, which would
+require a large set of codelets for efficiency and generality, or
+sacrificing a factor of 2 in speed to use a real DFT of twice the size.
+We currently employ the latter technique for general n, as well as a
+limited form of the former method: a split-radix decomposition when n
+is odd (N a multiple of 4).  For N containing many factors of 2, the
+split-radix method seems to recover most of the speed of the standard
+algorithm without the accuracy tradeoff.
+
+\1f
+File: fftw3.info,  Node: The Discrete Hartley Transform,  Prev: Real even/odd DFTs (cosine/sine transforms),  Up: More DFTs of Real Data
+
+2.5.3 The Discrete Hartley Transform
+------------------------------------
+
+If you are planning to use the DHT because you've heard that it is
+"faster" than the DFT (FFT), *stop here*.  The DHT is not faster than
+the DFT.  That story is an old but enduring misconception that was
+debunked in 1987.
+
+   The discrete Hartley transform (DHT) is an invertible linear
+transform closely related to the DFT.  In the DFT, one multiplies each
+input by cos - i * sin (a complex exponential), whereas in the DHT each
+input is multiplied by simply cos + sin.  Thus, the DHT transforms `n'
+real numbers to `n' real numbers, and has the convenient property of
+being its own inverse.  In FFTW, a DHT (of any positive `n') can be
+specified by an r2r kind of `FFTW_DHT'.  
+
+   Like the DFT, in FFTW the DHT is unnormalized, so computing a DHT of
+size `n' followed by another DHT of the same size will result in the
+original array multiplied by `n'.  
+
+   The DHT was originally proposed as a more efficient alternative to
+the DFT for real data, but it was subsequently shown that a specialized
+DFT (such as FFTW's r2hc or r2c transforms) could be just as fast.  In
+FFTW, the DHT is actually computed by post-processing an r2hc
+transform, so there is ordinarily no reason to prefer it from a
+performance perspective.(1) However, we have heard rumors that the DHT
+might be the most appropriate transform in its own right for certain
+applications, and we would be very interested to hear from anyone who
+finds it useful.
+
+   If `FFTW_DHT' is specified for multiple dimensions of a
+multi-dimensional transform, FFTW computes the separable product of 1d
+DHTs along each dimension.  Unfortunately, this is not quite the same
+thing as a true multi-dimensional DHT; you can compute the latter, if
+necessary, with at most `rank-1' post-processing passes [see e.g. H.
+Hao and R. N. Bracewell, Proc. IEEE 75, 264-266 (1987)].
+
+   For the precise mathematical definition of the DHT as used by FFTW,
+see *note What FFTW Really Computes::.
+
+   ---------- Footnotes ----------
+
+   (1) We provide the DHT mainly as a byproduct of some internal
+algorithms. FFTW computes a real input/output DFT of _prime_ size by
+re-expressing it as a DHT plus post/pre-processing and then using
+Rader's prime-DFT algorithm adapted to the DHT.
+
+\1f
+File: fftw3.info,  Node: Other Important Topics,  Next: FFTW Reference,  Prev: Tutorial,  Up: Top
+
+3 Other Important Topics
+************************
+
+* Menu:
+
+* SIMD alignment and fftw_malloc::
+* Multi-dimensional Array Format::
+* Words of Wisdom-Saving Plans::
+* Caveats in Using Wisdom::
+
+\1f
+File: fftw3.info,  Node: SIMD alignment and fftw_malloc,  Next: Multi-dimensional Array Format,  Prev: Other Important Topics,  Up: Other Important Topics
+
+3.1 SIMD alignment and fftw_malloc
+==================================
+
+SIMD, which stands for "Single Instruction Multiple Data," is a set of
+special operations supported by some processors to perform a single
+operation on several numbers (usually 2 or 4) simultaneously.  SIMD
+floating-point instructions are available on several popular CPUs:
+SSE/SSE2/AVX on recent x86/x86-64 processors, AltiVec (single precision)
+on some PowerPCs (Apple G4 and higher), NEON on some ARM models, and
+MIPS Paired Single (currently only in FFTW 3.2.x).  FFTW can be
+compiled to support the SIMD instructions on any of these systems.  
+
+   A program linking to an FFTW library compiled with SIMD support can
+obtain a nonnegligible speedup for most complex and r2c/c2r transforms.
+In order to obtain this speedup, however, the arrays of complex (or
+real) data passed to FFTW must be specially aligned in memory
+(typically 16-byte aligned), and often this alignment is more stringent
+than that provided by the usual `malloc' (etc.)  allocation routines.
+
+   In order to guarantee proper alignment for SIMD, therefore, in case
+your program is ever linked against a SIMD-using FFTW, we recommend
+allocating your transform data with `fftw_malloc' and de-allocating it
+with `fftw_free'.  These have exactly the same interface and behavior as
+`malloc'/`free', except that for a SIMD FFTW they ensure that the
+returned pointer has the necessary alignment (by calling `memalign' or
+its equivalent on your OS).
+
+   You are not _required_ to use `fftw_malloc'.  You can allocate your
+data in any way that you like, from `malloc' to `new' (in C++) to a
+fixed-size array declaration.  If the array happens not to be properly
+aligned, FFTW will not use the SIMD extensions.  
+
+   Since `fftw_malloc' only ever needs to be used for real and complex
+arrays, we provide two convenient wrapper routines `fftw_alloc_real(N)'
+and `fftw_alloc_complex(N)' that are equivalent to
+`(double*)fftw_malloc(sizeof(double) * N)' and
+`(fftw_complex*)fftw_malloc(sizeof(fftw_complex) * N)', respectively
+(or their equivalents in other precisions).
+
+\1f
+File: fftw3.info,  Node: Multi-dimensional Array Format,  Next: Words of Wisdom-Saving Plans,  Prev: SIMD alignment and fftw_malloc,  Up: Other Important Topics
+
+3.2 Multi-dimensional Array Format
+==================================
+
+This section describes the format in which multi-dimensional arrays are
+stored in FFTW.  We felt that a detailed discussion of this topic was
+necessary.  Since several different formats are common, this topic is
+often a source of confusion.
+
+* Menu:
+
+* Row-major Format::
+* Column-major Format::
+* Fixed-size Arrays in C::
+* Dynamic Arrays in C::
+* Dynamic Arrays in C-The Wrong Way::
+
+\1f
+File: fftw3.info,  Node: Row-major Format,  Next: Column-major Format,  Prev: Multi-dimensional Array Format,  Up: Multi-dimensional Array Format
+
+3.2.1 Row-major Format
+----------------------
+
+The multi-dimensional arrays passed to `fftw_plan_dft' etcetera are
+expected to be stored as a single contiguous block in "row-major" order
+(sometimes called "C order").  Basically, this means that as you step
+through adjacent memory locations, the first dimension's index varies
+most slowly and the last dimension's index varies most quickly.
+
+   To be more explicit, let us consider an array of rank d whose
+dimensions are n[0] x n[1] x n[2] x ... x n[d-1] . Now, we specify a
+location in the array by a sequence of d (zero-based) indices, one for
+each dimension: (i[0], i[1], ..., i[d-1]).  If the array is stored in
+row-major order, then this element is located at the position i[d-1] +
+n[d-1] * (i[d-2] + n[d-2] * (... + n[1] * i[0])).
+
+   Note that, for the ordinary complex DFT, each element of the array
+must be of type `fftw_complex'; i.e. a (real, imaginary) pair of
+(double-precision) numbers.
+
+   In the advanced FFTW interface, the physical dimensions n from which
+the indices are computed can be different from (larger than) the
+logical dimensions of the transform to be computed, in order to
+transform a subset of a larger array.  Note also that, in the advanced
+interface, the expression above is multiplied by a "stride" to get the
+actual array index--this is useful in situations where each element of
+the multi-dimensional array is actually a data structure (or another
+array), and you just want to transform a single field. In the basic
+interface, however, the stride is 1.  
+
+\1f
+File: fftw3.info,  Node: Column-major Format,  Next: Fixed-size Arrays in C,  Prev: Row-major Format,  Up: Multi-dimensional Array Format
+
+3.2.2 Column-major Format
+-------------------------
+
+Readers from the Fortran world are used to arrays stored in
+"column-major" order (sometimes called "Fortran order").  This is
+essentially the exact opposite of row-major order in that, here, the
+_first_ dimension's index varies most quickly.
+
+   If you have an array stored in column-major order and wish to
+transform it using FFTW, it is quite easy to do.  When creating the
+plan, simply pass the dimensions of the array to the planner in
+_reverse order_.  For example, if your array is a rank three `N x M x
+L' matrix in column-major order, you should pass the dimensions of the
+array as if it were an `L x M x N' matrix (which it is, from the
+perspective of FFTW).  This is done for you _automatically_ by the FFTW
+legacy-Fortran interface (*note Calling FFTW from Legacy Fortran::),
+but you must do it manually with the modern Fortran interface (*note
+Reversing array dimensions::).  
+
+\1f
+File: fftw3.info,  Node: Fixed-size Arrays in C,  Next: Dynamic Arrays in C,  Prev: Column-major Format,  Up: Multi-dimensional Array Format
+
+3.2.3 Fixed-size Arrays in C
+----------------------------
+
+A multi-dimensional array whose size is declared at compile time in C
+is _already_ in row-major order.  You don't have to do anything special
+to transform it.  For example:
+
+     {
+          fftw_complex data[N0][N1][N2];
+          fftw_plan plan;
+          ...
+          plan = fftw_plan_dft_3d(N0, N1, N2, &data[0][0][0], &data[0][0][0],
+                                  FFTW_FORWARD, FFTW_ESTIMATE);
+          ...
+     }
+
+   This will plan a 3d in-place transform of size `N0 x N1 x N2'.
+Notice how we took the address of the zero-th element to pass to the
+planner (we could also have used a typecast).
+
+   However, we tend to _discourage_ users from declaring their arrays
+in this way, for two reasons.  First, this allocates the array on the
+stack ("automatic" storage), which has a very limited size on most
+operating systems (declaring an array with more than a few thousand
+elements will often cause a crash).  (You can get around this
+limitation on many systems by declaring the array as `static' and/or
+global, but that has its own drawbacks.)  Second, it may not optimally
+align the array for use with a SIMD FFTW (*note SIMD alignment and
+fftw_malloc::).  Instead, we recommend using `fftw_malloc', as
+described below.
+
+\1f
+File: fftw3.info,  Node: Dynamic Arrays in C,  Next: Dynamic Arrays in C-The Wrong Way,  Prev: Fixed-size Arrays in C,  Up: Multi-dimensional Array Format
+
+3.2.4 Dynamic Arrays in C
+-------------------------
+
+We recommend allocating most arrays dynamically, with `fftw_malloc'.
+This isn't too hard to do, although it is not as straightforward for
+multi-dimensional arrays as it is for one-dimensional arrays.
+
+   Creating the array is simple: using a dynamic-allocation routine like
+`fftw_malloc', allocate an array big enough to store N `fftw_complex'
+values (for a complex DFT), where N is the product of the sizes of the
+array dimensions (i.e. the total number of complex values in the
+array).  For example, here is code to allocate a 5 x 12 x 27  rank-3
+array: 
+
+     fftw_complex *an_array;
+     an_array = (fftw_complex*) fftw_malloc(5*12*27 * sizeof(fftw_complex));
+
+   Accessing the array elements, however, is more tricky--you can't
+simply use multiple applications of the `[]' operator like you could
+for fixed-size arrays.  Instead, you have to explicitly compute the
+offset into the array using the formula given earlier for row-major
+arrays.  For example, to reference the (i,j,k)-th element of the array
+allocated above, you would use the expression `an_array[k + 27 * (j +
+12 * i)]'.
+
+   This pain can be alleviated somewhat by defining appropriate macros,
+or, in C++, creating a class and overloading the `()' operator.  The
+recent C99 standard provides a way to reinterpret the dynamic array as
+a "variable-length" multi-dimensional array amenable to `[]', but this
+feature is not yet widely supported by compilers.  
+
+\1f
+File: fftw3.info,  Node: Dynamic Arrays in C-The Wrong Way,  Prev: Dynamic Arrays in C,  Up: Multi-dimensional Array Format
+
+3.2.5 Dynamic Arrays in C--The Wrong Way
+----------------------------------------
+
+A different method for allocating multi-dimensional arrays in C is
+often suggested that is incompatible with FFTW: _using it will cause
+FFTW to die a painful death_.  We discuss the technique here, however,
+because it is so commonly known and used.  This method is to create
+arrays of pointers of arrays of pointers of ...etcetera.  For example,
+the analogue in this method to the example above is:
+
+     int i,j;
+     fftw_complex ***a_bad_array;  /* another way to make a 5x12x27 array */
+
+     a_bad_array = (fftw_complex ***) malloc(5 * sizeof(fftw_complex **));
+     for (i = 0; i < 5; ++i) {
+          a_bad_array[i] =
+             (fftw_complex **) malloc(12 * sizeof(fftw_complex *));
+          for (j = 0; j < 12; ++j)
+               a_bad_array[i][j] =
+                     (fftw_complex *) malloc(27 * sizeof(fftw_complex));
+     }
+
+   As you can see, this sort of array is inconvenient to allocate (and
+deallocate).  On the other hand, it has the advantage that the
+(i,j,k)-th element can be referenced simply by `a_bad_array[i][j][k]'.
+
+   If you like this technique and want to maximize convenience in
+accessing the array, but still want to pass the array to FFTW, you can
+use a hybrid method.  Allocate the array as one contiguous block, but
+also declare an array of arrays of pointers that point to appropriate
+places in the block.  That sort of trick is beyond the scope of this
+documentation; for more information on multi-dimensional arrays in C,
+see the `comp.lang.c' FAQ (http://c-faq.com/aryptr/dynmuldimary.html).
+
+\1f
+File: fftw3.info,  Node: Words of Wisdom-Saving Plans,  Next: Caveats in Using Wisdom,  Prev: Multi-dimensional Array Format,  Up: Other Important Topics
+
+3.3 Words of Wisdom--Saving Plans
+=================================
+
+FFTW implements a method for saving plans to disk and restoring them.
+In fact, what FFTW does is more general than just saving and loading
+plans.  The mechanism is called "wisdom".  Here, we describe this
+feature at a high level. *Note FFTW Reference::, for a less casual but
+more complete discussion of how to use wisdom in FFTW.
+
+   Plans created with the `FFTW_MEASURE', `FFTW_PATIENT', or
+`FFTW_EXHAUSTIVE' options produce near-optimal FFT performance, but may
+require a long time to compute because FFTW must measure the runtime of
+many possible plans and select the best one.  This setup is designed
+for the situations where so many transforms of the same size must be
+computed that the start-up time is irrelevant.  For short
+initialization times, but slower transforms, we have provided
+`FFTW_ESTIMATE'.  The `wisdom' mechanism is a way to get the best of
+both worlds: you compute a good plan once, save it to disk, and later
+reload it as many times as necessary.  The wisdom mechanism can
+actually save and reload many plans at once, not just one.  
+
+   Whenever you create a plan, the FFTW planner accumulates wisdom,
+which is information sufficient to reconstruct the plan.  After
+planning, you can save this information to disk by means of the
+function:
+     int fftw_export_wisdom_to_filename(const char *filename);
+   (This function returns non-zero on success.)
+
+   The next time you run the program, you can restore the wisdom with
+`fftw_import_wisdom_from_filename' (which also returns non-zero on
+success), and then recreate the plan using the same flags as before.
+     int fftw_import_wisdom_from_filename(const char *filename);
+   
+   Wisdom is automatically used for any size to which it is applicable,
+as long as the planner flags are not more "patient" than those with
+which the wisdom was created.  For example, wisdom created with
+`FFTW_MEASURE' can be used if you later plan with `FFTW_ESTIMATE' or
+`FFTW_MEASURE', but not with `FFTW_PATIENT'.
+
+   The `wisdom' is cumulative, and is stored in a global, private data
+structure managed internally by FFTW.  The storage space required is
+minimal, proportional to the logarithm of the sizes the wisdom was
+generated from.  If memory usage is a concern, however, the wisdom can
+be forgotten and its associated memory freed by calling:
+     void fftw_forget_wisdom(void);
+   
+   Wisdom can be exported to a file, a string, or any other medium.
+For details, see *note Wisdom::.
+
+\1f
+File: fftw3.info,  Node: Caveats in Using Wisdom,  Prev: Words of Wisdom-Saving Plans,  Up: Other Important Topics
+
+3.4 Caveats in Using Wisdom
+===========================
+
+     For in much wisdom is much grief, and he that increaseth knowledge
+     increaseth sorrow.  [Ecclesiastes 1:18] 
+
+   There are pitfalls to using wisdom, in that it can negate FFTW's
+ability to adapt to changing hardware and other conditions. For
+example, it would be perfectly possible to export wisdom from a program
+running on one processor and import it into a program running on
+another processor.  Doing so, however, would mean that the second
+program would use plans optimized for the first processor, instead of
+the one it is running on.
+
+   It should be safe to reuse wisdom as long as the hardware and program
+binaries remain unchanged. (Actually, the optimal plan may change even
+between runs of the same binary on identical hardware, due to
+differences in the virtual memory environment, etcetera.  Users
+seriously interested in performance should worry about this problem,
+too.)  It is likely that, if the same wisdom is used for two different
+program binaries, even running on the same machine, the plans may be
+sub-optimal because of differing code alignments.  It is therefore wise
+to recreate wisdom every time an application is recompiled.  The more
+the underlying hardware and software changes between the creation of
+wisdom and its use, the greater grows the risk of sub-optimal plans.
+
+   Nevertheless, if the choice is between using `FFTW_ESTIMATE' or
+using possibly-suboptimal wisdom (created on the same machine, but for a
+different binary), the wisdom is likely to be better.  For this reason,
+we provide a function to import wisdom from a standard system-wide
+location (`/etc/fftw/wisdom' on Unix): 
+
+     int fftw_import_system_wisdom(void);
+   
+   FFTW also provides a standalone program, `fftw-wisdom' (described by
+its own `man' page on Unix) with which users can create wisdom, e.g.
+for a canonical set of sizes to store in the system wisdom file.  *Note
+Wisdom Utilities::.  
+
+\1f
+File: fftw3.info,  Node: FFTW Reference,  Next: Multi-threaded FFTW,  Prev: Other Important Topics,  Up: Top
+
+4 FFTW Reference
+****************
+
+This chapter provides a complete reference for all sequential (i.e.,
+one-processor) FFTW functions.  Parallel transforms are described in
+later chapters.
+
+* Menu:
+
+* Data Types and Files::
+* Using Plans::
+* Basic Interface::
+* Advanced Interface::
+* Guru Interface::
+* New-array Execute Functions::
+* Wisdom::
+* What FFTW Really Computes::
+
+\1f
+File: fftw3.info,  Node: Data Types and Files,  Next: Using Plans,  Prev: FFTW Reference,  Up: FFTW Reference
+
+4.1 Data Types and Files
+========================
+
+All programs using FFTW should include its header file:
+
+     #include <fftw3.h>
+
+   You must also link to the FFTW library.  On Unix, this means adding
+`-lfftw3 -lm' at the _end_ of the link command.
+
+* Menu:
+
+* Complex numbers::
+* Precision::
+* Memory Allocation::
+
+\1f
+File: fftw3.info,  Node: Complex numbers,  Next: Precision,  Prev: Data Types and Files,  Up: Data Types and Files
+
+4.1.1 Complex numbers
+---------------------
+
+The default FFTW interface uses `double' precision for all
+floating-point numbers, and defines a `fftw_complex' type to hold
+complex numbers as:
+
+     typedef double fftw_complex[2];
+   
+   Here, the `[0]' element holds the real part and the `[1]' element
+holds the imaginary part.
+
+   Alternatively, if you have a C compiler (such as `gcc') that
+supports the C99 revision of the ANSI C standard, you can use C's new
+native complex type (which is binary-compatible with the typedef above).
+In particular, if you `#include <complex.h>' _before_ `<fftw3.h>', then
+`fftw_complex' is defined to be the native complex type and you can
+manipulate it with ordinary arithmetic (e.g. `x = y * (3+4*I)', where
+`x' and `y' are `fftw_complex' and `I' is the standard symbol for the
+imaginary unit); 
+
+   C++ has its own `complex<T>' template class, defined in the standard
+`<complex>' header file.  Reportedly, the C++ standards committee has
+recently agreed to mandate that the storage format used for this type
+be binary-compatible with the C99 type, i.e. an array `T[2]' with
+consecutive real `[0]' and imaginary `[1]' parts.  (See report
+`http://www.open-std.org/jtc1/sc22/WG21/docs/papers/2002/n1388.pdf
+WG21/N1388'.)  Although not part of the official standard as of this
+writing, the proposal stated that: "This solution has been tested with
+all current major implementations of the standard library and shown to
+be working."  To the extent that this is true, if you have a variable
+`complex<double> *x', you can pass it directly to FFTW via
+`reinterpret_cast<fftw_complex*>(x)'.  
+
+\1f
+File: fftw3.info,  Node: Precision,  Next: Memory Allocation,  Prev: Complex numbers,  Up: Data Types and Files
+
+4.1.2 Precision
+---------------
+
+You can install single and long-double precision versions of FFTW,
+which replace `double' with `float' and `long double', respectively
+(*note Installation and Customization::).  To use these interfaces, you:
+
+   * Link to the single/long-double libraries; on Unix, `-lfftw3f' or
+     `-lfftw3l' instead of (or in addition to) `-lfftw3'.  (You can
+     link to the different-precision libraries simultaneously.)
+
+   * Include the _same_ `<fftw3.h>' header file.
+
+   * Replace all lowercase instances of `fftw_' with `fftwf_' or
+     `fftwl_' for single or long-double precision, respectively.
+     (`fftw_complex' becomes `fftwf_complex', `fftw_execute' becomes
+     `fftwf_execute', etcetera.)
+
+   * Uppercase names, i.e. names beginning with `FFTW_', remain the
+     same.
+
+   * Replace `double' with `float' or `long double' for subroutine
+     parameters.
+
+
+   Depending upon your compiler and/or hardware, `long double' may not
+be any more precise than `double' (or may not be supported at all,
+although it is standard in C99).  
+
+   We also support using the nonstandard `__float128'
+quadruple-precision type provided by recent versions of `gcc' on 32-
+and 64-bit x86 hardware (*note Installation and Customization::).  To
+use this type, link with `-lfftw3q -lquadmath -lm' (the `libquadmath'
+library provided by `gcc' is needed for quadruple-precision
+trigonometric functions) and use `fftwq_' identifiers.
+
+\1f
+File: fftw3.info,  Node: Memory Allocation,  Prev: Precision,  Up: Data Types and Files
+
+4.1.3 Memory Allocation
+-----------------------
+
+     void *fftw_malloc(size_t n);
+     void fftw_free(void *p);
+
+   These are functions that behave identically to `malloc' and `free',
+except that they guarantee that the returned pointer obeys any special
+alignment restrictions imposed by any algorithm in FFTW (e.g. for SIMD
+acceleration).  *Note SIMD alignment and fftw_malloc::.  
+
+   Data allocated by `fftw_malloc' _must_ be deallocated by `fftw_free'
+and not by the ordinary `free'.
+
+   These routines simply call through to your operating system's
+`malloc' or, if necessary, its aligned equivalent (e.g. `memalign'), so
+you normally need not worry about any significant time or space
+overhead.  You are _not required_ to use them to allocate your data,
+but we strongly recommend it.
+
+   Note: in C++, just as with ordinary `malloc', you must typecast the
+output of `fftw_malloc' to whatever pointer type you are allocating.  
+
+   We also provide the following two convenience functions to allocate
+real and complex arrays with `n' elements, which are equivalent to
+`(double *) fftw_malloc(sizeof(double) * n)' and `(fftw_complex *)
+fftw_malloc(sizeof(fftw_complex) * n)', respectively:
+
+     double *fftw_alloc_real(size_t n);
+     fftw_complex *fftw_alloc_complex(size_t n);
+   
+   The equivalent functions in other precisions allocate arrays of `n'
+elements in that precision.  e.g. `fftwf_alloc_real(n)' is equivalent
+to `(float *) fftwf_malloc(sizeof(float) * n)'.  
+
+\1f
+File: fftw3.info,  Node: Using Plans,  Next: Basic Interface,  Prev: Data Types and Files,  Up: FFTW Reference
+
+4.2 Using Plans
+===============
+
+Plans for all transform types in FFTW are stored as type `fftw_plan'
+(an opaque pointer type), and are created by one of the various
+planning routines described in the following sections.  An `fftw_plan'
+contains all information necessary to compute the transform, including
+the pointers to the input and output arrays.
+
+     void fftw_execute(const fftw_plan plan);
+   
+   This executes the `plan', to compute the corresponding transform on
+the arrays for which it was planned (which must still exist).  The plan
+is not modified, and `fftw_execute' can be called as many times as
+desired.
+
+   To apply a given plan to a different array, you can use the
+new-array execute interface.  *Note New-array Execute Functions::.
+
+   `fftw_execute' (and equivalents) is the only function in FFTW
+guaranteed to be thread-safe; see *note Thread safety::.
+
+   This function:
+     void fftw_destroy_plan(fftw_plan plan);
+   deallocates the `plan' and all its associated data.
+
+   FFTW's planner saves some other persistent data, such as the
+accumulated wisdom and a list of algorithms available in the current
+configuration.  If you want to deallocate all of that and reset FFTW to
+the pristine state it was in when you started your program, you can
+call:
+
+     void fftw_cleanup(void);
+   
+   After calling `fftw_cleanup', all existing plans become undefined,
+and you should not attempt to execute them nor to destroy them.  You can
+however create and execute/destroy new plans, in which case FFTW starts
+accumulating wisdom information again.
+
+   `fftw_cleanup' does not deallocate your plans, however.  To prevent
+memory leaks, you must still call `fftw_destroy_plan' before executing
+`fftw_cleanup'.
+
+   Occasionally, it may useful to know FFTW's internal "cost" metric
+that it uses to compare plans to one another; this cost is proportional
+to an execution time of the plan, in undocumented units, if the plan
+was created with the `FFTW_MEASURE' or other timing-based options, or
+alternatively is a heuristic cost function for `FFTW_ESTIMATE' plans.
+(The cost values of measured and estimated plans are not comparable,
+being in different units.  Also, costs from different FFTW versions or
+the same version compiled differently may not be in the same units.
+Plans created from wisdom have a cost of 0 since no timing measurement
+is performed for them.  Finally, certain problems for which only one
+top-level algorithm was possible may have required no measurements of
+the cost of the whole plan, in which case `fftw_cost' will also return
+0.)  The cost metric for a given plan is returned by:
+
+     double fftw_cost(const fftw_plan plan);
+   
+   The following two routines are provided purely for academic purposes
+(that is, for entertainment).
+
+     void fftw_flops(const fftw_plan plan,
+                     double *add, double *mul, double *fma);
+   
+   Given a `plan', set `add', `mul', and `fma' to an exact count of the
+number of floating-point additions, multiplications, and fused
+multiply-add operations involved in the plan's execution.  The total
+number of floating-point operations (flops) is `add + mul + 2*fma', or
+`add + mul + fma' if the hardware supports fused multiply-add
+instructions (although the number of FMA operations is only approximate
+because of compiler voodoo).  (The number of operations should be an
+integer, but we use `double' to avoid overflowing `int' for large
+transforms; the arguments are of type `double' even for single and
+long-double precision versions of FFTW.)
+
+     void fftw_fprint_plan(const fftw_plan plan, FILE *output_file);
+     void fftw_print_plan(const fftw_plan plan);
+   
+   This outputs a "nerd-readable" representation of the `plan' to the
+given file or to `stdout', respectively.
+
+\1f
+File: fftw3.info,  Node: Basic Interface,  Next: Advanced Interface,  Prev: Using Plans,  Up: FFTW Reference
+
+4.3 Basic Interface
+===================
+
+Recall that the FFTW API is divided into three parts(1): the "basic
+interface" computes a single transform of contiguous data, the "advanced
+interface" computes transforms of multiple or strided arrays, and the
+"guru interface" supports the most general data layouts,
+multiplicities, and strides.  This section describes the the basic
+interface, which we expect to satisfy the needs of most users.
+
+* Menu:
+
+* Complex DFTs::
+* Planner Flags::
+* Real-data DFTs::
+* Real-data DFT Array Format::
+* Real-to-Real Transforms::
+* Real-to-Real Transform Kinds::
+
+   ---------- Footnotes ----------
+
+   (1) Gallia est omnis divisa in partes tres (Julius Caesar).
+
+\1f
+File: fftw3.info,  Node: Complex DFTs,  Next: Planner Flags,  Prev: Basic Interface,  Up: Basic Interface
+
+4.3.1 Complex DFTs
+------------------
+
+     fftw_plan fftw_plan_dft_1d(int n0,
+                                fftw_complex *in, fftw_complex *out,
+                                int sign, unsigned flags);
+     fftw_plan fftw_plan_dft_2d(int n0, int n1,
+                                fftw_complex *in, fftw_complex *out,
+                                int sign, unsigned flags);
+     fftw_plan fftw_plan_dft_3d(int n0, int n1, int n2,
+                                fftw_complex *in, fftw_complex *out,
+                                int sign, unsigned flags);
+     fftw_plan fftw_plan_dft(int rank, const int *n,
+                             fftw_complex *in, fftw_complex *out,
+                             int sign, unsigned flags);
+
+   Plan a complex input/output discrete Fourier transform (DFT) in zero
+or more dimensions, returning an `fftw_plan' (*note Using Plans::).
+
+   Once you have created a plan for a certain transform type and
+parameters, then creating another plan of the same type and parameters,
+but for different arrays, is fast and shares constant data with the
+first plan (if it still exists).
+
+   The planner returns `NULL' if the plan cannot be created.  In the
+standard FFTW distribution, the basic interface is guaranteed to return
+a non-`NULL' plan.  A plan may be `NULL', however, if you are using a
+customized FFTW configuration supporting a restricted set of transforms.
+
+Arguments
+.........
+
+   * `rank' is the rank of the transform (it should be the size of the
+     array `*n'), and can be any non-negative integer.  (*Note Complex
+     Multi-Dimensional DFTs::, for the definition of "rank".)  The
+     `_1d', `_2d', and `_3d' planners correspond to a `rank' of `1',
+     `2', and `3', respectively.  The rank may be zero, which is
+     equivalent to a rank-1 transform of size 1, i.e. a copy of one
+     number from input to output.
+
+   * `n0', `n1', `n2', or `n[0..rank-1]' (as appropriate for each
+     routine) specify the size of the transform dimensions.  They can
+     be any positive integer.
+
+        - Multi-dimensional arrays are stored in row-major order with
+          dimensions: `n0' x `n1'; or `n0' x `n1' x `n2'; or `n[0]' x
+          `n[1]' x ... x `n[rank-1]'.  *Note Multi-dimensional Array
+          Format::.
+
+        - FFTW is best at handling sizes of the form 2^a 3^b 5^c 7^d
+          11^e 13^f, where e+f is either 0 or 1, and the other exponents
+          are arbitrary.  Other sizes are computed by means of a slow,
+          general-purpose algorithm (which nevertheless retains O(n log
+          n)  performance even for prime sizes).  It is possible to
+          customize FFTW for different array sizes; see *note
+          Installation and Customization::.  Transforms whose sizes are
+          powers of 2 are especially fast.
+
+   * `in' and `out' point to the input and output arrays of the
+     transform, which may be the same (yielding an in-place transform).  These
+     arrays are overwritten during planning, unless `FFTW_ESTIMATE' is
+     used in the flags.  (The arrays need not be initialized, but they
+     must be allocated.)
+
+     If `in == out', the transform is "in-place" and the input array is
+     overwritten. If `in != out', the two arrays must not overlap (but
+     FFTW does not check for this condition).
+
+   * `sign' is the sign of the exponent in the formula that defines the
+     Fourier transform.  It can be -1 (= `FFTW_FORWARD') or +1 (=
+     `FFTW_BACKWARD').
+
+   * `flags' is a bitwise OR (`|') of zero or more planner flags, as
+     defined in *note Planner Flags::.
+
+
+   FFTW computes an unnormalized transform: computing a forward
+followed by a backward transform (or vice versa) will result in the
+original data multiplied by the size of the transform (the product of
+the dimensions).  For more information, see *note What FFTW Really
+Computes::.
+
+\1f
+File: fftw3.info,  Node: Planner Flags,  Next: Real-data DFTs,  Prev: Complex DFTs,  Up: Basic Interface
+
+4.3.2 Planner Flags
+-------------------
+
+All of the planner routines in FFTW accept an integer `flags' argument,
+which is a bitwise OR (`|') of zero or more of the flag constants
+defined below.  These flags control the rigor (and time) of the
+planning process, and can also impose (or lift) restrictions on the
+type of transform algorithm that is employed.
+
+   _Important:_ the planner overwrites the input array during planning
+unless a saved plan (*note Wisdom::) is available for that problem, so
+you should initialize your input data after creating the plan.  The
+only exceptions to this are the `FFTW_ESTIMATE' and `FFTW_WISDOM_ONLY'
+flags, as mentioned below.
+
+   In all  cases, if  wisdom is  available for the  given problem  that
+was created  with equal-or-greater  planning rigor,  then the  more
+rigorous wisdom is used.  For example, in `FFTW_ESTIMATE' mode any
+available wisdom is used, whereas  in `FFTW_PATIENT' mode only wisdom
+created in patient or exhaustive mode can be used.  *Note Words of
+Wisdom-Saving Plans::.
+
+Planning-rigor flags
+....................
+
+   * `FFTW_ESTIMATE' specifies that, instead of actual measurements of
+     different algorithms, a simple heuristic is used to pick a
+     (probably sub-optimal) plan quickly.  With this flag, the
+     input/output arrays are not overwritten during planning.
+
+   * `FFTW_MEASURE' tells FFTW to find an optimized plan by actually
+     _computing_ several FFTs and measuring their execution time.
+     Depending on your machine, this can take some time (often a few
+     seconds).  `FFTW_MEASURE' is the default planning option.
+
+   * `FFTW_PATIENT' is like `FFTW_MEASURE', but considers a wider range
+     of algorithms and often produces a "more optimal" plan (especially
+     for large transforms), but at the expense of several times longer
+     planning time (especially for large transforms).
+
+   * `FFTW_EXHAUSTIVE' is like `FFTW_PATIENT', but considers an even
+     wider range of algorithms, including many that we think are
+     unlikely to be fast, to produce the most optimal plan but with a
+     substantially increased planning time.
+
+   * `FFTW_WISDOM_ONLY' is a special planning mode in which the plan is
+     only created if wisdom is available for the given problem, and
+     otherwise a `NULL' plan is returned.  This can be combined with
+     other flags, e.g. `FFTW_WISDOM_ONLY | FFTW_PATIENT' creates a plan
+     only if wisdom is available that was created in `FFTW_PATIENT' or
+     `FFTW_EXHAUSTIVE' mode.  The `FFTW_WISDOM_ONLY' flag is intended
+     for users who need to detect whether wisdom is available; for
+     example, if wisdom is not available one may wish to allocate new
+     arrays for planning so that user data is not overwritten.
+
+
+Algorithm-restriction flags
+...........................
+
+   * `FFTW_DESTROY_INPUT' specifies that an out-of-place transform is
+     allowed to _overwrite its input_ array with arbitrary data; this
+     can sometimes allow more efficient algorithms to be employed.  
+
+   * `FFTW_PRESERVE_INPUT' specifies that an out-of-place transform must
+     _not change its input_ array.  This is ordinarily the _default_,
+     except for c2r and hc2r (i.e. complex-to-real) transforms for
+     which `FFTW_DESTROY_INPUT' is the default.  In the latter cases,
+     passing `FFTW_PRESERVE_INPUT' will attempt to use algorithms that
+     do not destroy the input, at the expense of worse performance; for
+     multi-dimensional c2r transforms, however, no input-preserving
+     algorithms are implemented and the planner will return `NULL' if
+     one is requested.  
+
+   * `FFTW_UNALIGNED' specifies that the algorithm may not impose any
+     unusual alignment requirements on the input/output arrays (i.e. no
+     SIMD may be used).  This flag is normally _not necessary_, since
+     the planner automatically detects misaligned arrays.  The only use
+     for this flag is if you want to use the new-array execute
+     interface to execute a given plan on a different array that may
+     not be aligned like the original.  (Using `fftw_malloc' makes this
+     flag unnecessary even then.)
+
+
+Limiting planning time
+......................
+
+     extern void fftw_set_timelimit(double seconds);
+
+   This function instructs FFTW to spend at most `seconds' seconds
+(approximately) in the planner.  If `seconds == FFTW_NO_TIMELIMIT' (the
+default value, which is negative), then planning time is unbounded.
+Otherwise, FFTW plans with a progressively wider range of algorithms
+until the the given time limit is reached or the given range of
+algorithms is explored, returning the best available plan.  
+
+   For example, specifying `FFTW_PATIENT' first plans in
+`FFTW_ESTIMATE' mode, then in `FFTW_MEASURE' mode, then finally (time
+permitting) in `FFTW_PATIENT'.  If `FFTW_EXHAUSTIVE' is specified
+instead, the planner will further progress to `FFTW_EXHAUSTIVE' mode.
+
+   Note that the `seconds' argument specifies only a rough limit; in
+practice, the planner may use somewhat more time if the time limit is
+reached when the planner is in the middle of an operation that cannot
+be interrupted.  At the very least, the planner will complete planning
+in `FFTW_ESTIMATE' mode (which is thus equivalent to a time limit of 0).
+
+\1f
+File: fftw3.info,  Node: Real-data DFTs,  Next: Real-data DFT Array Format,  Prev: Planner Flags,  Up: Basic Interface
+
+4.3.3 Real-data DFTs
+--------------------
+
+     fftw_plan fftw_plan_dft_r2c_1d(int n0,
+                                    double *in, fftw_complex *out,
+                                    unsigned flags);
+     fftw_plan fftw_plan_dft_r2c_2d(int n0, int n1,
+                                    double *in, fftw_complex *out,
+                                    unsigned flags);
+     fftw_plan fftw_plan_dft_r2c_3d(int n0, int n1, int n2,
+                                    double *in, fftw_complex *out,
+                                    unsigned flags);
+     fftw_plan fftw_plan_dft_r2c(int rank, const int *n,
+                                 double *in, fftw_complex *out,
+                                 unsigned flags);
+
+   Plan a real-input/complex-output discrete Fourier transform (DFT) in
+zero or more dimensions, returning an `fftw_plan' (*note Using Plans::).
+
+   Once you have created a plan for a certain transform type and
+parameters, then creating another plan of the same type and parameters,
+but for different arrays, is fast and shares constant data with the
+first plan (if it still exists).
+
+   The planner returns `NULL' if the plan cannot be created.  A
+non-`NULL' plan is always returned by the basic interface unless you
+are using a customized FFTW configuration supporting a restricted set
+of transforms, or if you use the `FFTW_PRESERVE_INPUT' flag with a
+multi-dimensional out-of-place c2r transform (see below).
+
+Arguments
+.........
+
+   * `rank' is the rank of the transform (it should be the size of the
+     array `*n'), and can be any non-negative integer.  (*Note Complex
+     Multi-Dimensional DFTs::, for the definition of "rank".)  The
+     `_1d', `_2d', and `_3d' planners correspond to a `rank' of `1',
+     `2', and `3', respectively.  The rank may be zero, which is
+     equivalent to a rank-1 transform of size 1, i.e. a copy of one
+     real number (with zero imaginary part) from input to output.
+
+   * `n0', `n1', `n2', or `n[0..rank-1]', (as appropriate for each
+     routine) specify the size of the transform dimensions.  They can
+     be any positive integer.  This is different in general from the
+     _physical_ array dimensions, which are described in *note
+     Real-data DFT Array Format::.
+
+        - FFTW is best at handling sizes of the form 2^a 3^b 5^c 7^d
+          11^e 13^f, where e+f is either 0 or 1, and the other exponents
+          are arbitrary.  Other sizes are computed by means of a slow,
+          general-purpose algorithm (which nevertheless retains O(n log
+          n)  performance even for prime sizes).  (It is possible to
+          customize FFTW for different array sizes; see *note
+          Installation and Customization::.)  Transforms whose sizes
+          are powers of 2 are especially fast, and it is generally
+          beneficial for the _last_ dimension of an r2c/c2r transform
+          to be _even_.
+
+   * `in' and `out' point to the input and output arrays of the
+     transform, which may be the same (yielding an in-place transform).  These
+     arrays are overwritten during planning, unless `FFTW_ESTIMATE' is
+     used in the flags.  (The arrays need not be initialized, but they
+     must be allocated.)  For an in-place transform, it is important to
+     remember that the real array will require padding, described in
+     *note Real-data DFT Array Format::.  
+
+   * `flags' is a bitwise OR (`|') of zero or more planner flags, as
+     defined in *note Planner Flags::.
+
+
+   The inverse transforms, taking complex input (storing the
+non-redundant half of a logically Hermitian array) to real output, are
+given by:
+
+     fftw_plan fftw_plan_dft_c2r_1d(int n0,
+                                    fftw_complex *in, double *out,
+                                    unsigned flags);
+     fftw_plan fftw_plan_dft_c2r_2d(int n0, int n1,
+                                    fftw_complex *in, double *out,
+                                    unsigned flags);
+     fftw_plan fftw_plan_dft_c2r_3d(int n0, int n1, int n2,
+                                    fftw_complex *in, double *out,
+                                    unsigned flags);
+     fftw_plan fftw_plan_dft_c2r(int rank, const int *n,
+                                 fftw_complex *in, double *out,
+                                 unsigned flags);
+   
+   The arguments are the same as for the r2c transforms, except that the
+input and output data formats are reversed.
+
+   FFTW computes an unnormalized transform: computing an r2c followed
+by a c2r transform (or vice versa) will result in the original data
+multiplied by the size of the transform (the product of the logical
+dimensions).  An r2c transform produces the same output as a
+`FFTW_FORWARD' complex DFT of the same input, and a c2r transform is
+correspondingly equivalent to `FFTW_BACKWARD'.  For more information,
+see *note What FFTW Really Computes::.
+
+\1f
+File: fftw3.info,  Node: Real-data DFT Array Format,  Next: Real-to-Real Transforms,  Prev: Real-data DFTs,  Up: Basic Interface
+
+4.3.4 Real-data DFT Array Format
+--------------------------------
+
+The output of a DFT of real data (r2c) contains symmetries that, in
+principle, make half of the outputs redundant (*note What FFTW Really
+Computes::).  (Similarly for the input of an inverse c2r transform.)  In
+practice, it is not possible to entirely realize these savings in an
+efficient and understandable format that generalizes to
+multi-dimensional transforms.  Instead, the output of the r2c
+transforms is _slightly_ over half of the output of the corresponding
+complex transform.  We do not "pack" the data in any way, but store it
+as an ordinary array of `fftw_complex' values.  In fact, this data is
+simply a subsection of what would be the array in the corresponding
+complex transform.
+
+   Specifically, for a real transform of d (= `rank') dimensions n[0] x
+n[1] x n[2] x ... x n[d-1] , the complex data is an n[0] x n[1] x n[2]
+x ... x (n[d-1]/2 + 1)  array of `fftw_complex' values in row-major
+order (with the division rounded down).  That is, we only store the
+_lower_ half (non-negative frequencies), plus one element, of the last
+dimension of the data from the ordinary complex transform.  (We could
+have instead taken half of any other dimension, but implementation
+turns out to be simpler if the last, contiguous, dimension is used.)
+
+   For an out-of-place transform, the real data is simply an array with
+physical dimensions n[0] x n[1] x n[2] x ... x n[d-1]  in row-major
+order.
+
+   For an in-place transform, some complications arise since the
+complex data is slightly larger than the real data.  In this case, the
+final dimension of the real data must be _padded_ with extra values to
+accommodate the size of the complex data--two extra if the last
+dimension is even and one if it is odd.  That is, the last dimension of
+the real data must physically contain 2 * (n[d-1]/2+1) `double' values
+(exactly enough to hold the complex data).  This physical array size
+does not, however, change the _logical_ array size--only n[d-1] values
+are actually stored in the last dimension, and n[d-1] is the last
+dimension passed to the planner.
+
+\1f
+File: fftw3.info,  Node: Real-to-Real Transforms,  Next: Real-to-Real Transform Kinds,  Prev: Real-data DFT Array Format,  Up: Basic Interface
+
+4.3.5 Real-to-Real Transforms
+-----------------------------
+
+     fftw_plan fftw_plan_r2r_1d(int n, double *in, double *out,
+                                fftw_r2r_kind kind, unsigned flags);
+     fftw_plan fftw_plan_r2r_2d(int n0, int n1, double *in, double *out,
+                                fftw_r2r_kind kind0, fftw_r2r_kind kind1,
+                                unsigned flags);
+     fftw_plan fftw_plan_r2r_3d(int n0, int n1, int n2,
+                                double *in, double *out,
+                                fftw_r2r_kind kind0,
+                                fftw_r2r_kind kind1,
+                                fftw_r2r_kind kind2,
+                                unsigned flags);
+     fftw_plan fftw_plan_r2r(int rank, const int *n, double *in, double *out,
+                             const fftw_r2r_kind *kind, unsigned flags);
+
+   Plan a real input/output (r2r) transform of various kinds in zero or
+more dimensions, returning an `fftw_plan' (*note Using Plans::).
+
+   Once you have created a plan for a certain transform type and
+parameters, then creating another plan of the same type and parameters,
+but for different arrays, is fast and shares constant data with the
+first plan (if it still exists).
+
+   The planner returns `NULL' if the plan cannot be created.  A
+non-`NULL' plan is always returned by the basic interface unless you
+are using a customized FFTW configuration supporting a restricted set
+of transforms, or for size-1 `FFTW_REDFT00' kinds (which are not
+defined).  
+
+Arguments
+.........
+
+   * `rank' is the dimensionality of the transform (it should be the
+     size of the arrays `*n' and `*kind'), and can be any non-negative
+     integer.  The `_1d', `_2d', and `_3d' planners correspond to a
+     `rank' of `1', `2', and `3', respectively.  A `rank' of zero is
+     equivalent to a copy of one number from input to output.
+
+   * `n', or `n0'/`n1'/`n2', or `n[rank]', respectively, gives the
+     (physical) size of the transform dimensions.  They can be any
+     positive integer.
+
+        - Multi-dimensional arrays are stored in row-major order with
+          dimensions: `n0' x `n1'; or `n0' x `n1' x `n2'; or `n[0]' x
+          `n[1]' x ... x `n[rank-1]'.  *Note Multi-dimensional Array
+          Format::.
+
+        - FFTW is generally best at handling sizes of the form 2^a 3^b
+          5^c 7^d 11^e 13^f, where e+f is either 0 or 1, and the other
+          exponents are arbitrary.  Other sizes are computed by means
+          of a slow, general-purpose algorithm (which nevertheless
+          retains O(n log n)  performance even for prime sizes).  (It
+          is possible to customize FFTW for different array sizes; see
+          *note Installation and Customization::.)  Transforms whose
+          sizes are powers of 2 are especially fast.
+
+        - For a `REDFT00' or `RODFT00' transform kind in a dimension of
+          size n, it is n-1 or n+1, respectively, that should be
+          factorizable in the above form.
+
+   * `in' and `out' point to the input and output arrays of the
+     transform, which may be the same (yielding an in-place transform).  These
+     arrays are overwritten during planning, unless `FFTW_ESTIMATE' is
+     used in the flags.  (The arrays need not be initialized, but they
+     must be allocated.)
+
+   * `kind', or `kind0'/`kind1'/`kind2', or `kind[rank]', is the kind
+     of r2r transform used for the corresponding dimension.  The valid
+     kind constants are described in *note Real-to-Real Transform
+     Kinds::.  In a multi-dimensional transform, what is computed is
+     the separable product formed by taking each transform kind along
+     the corresponding dimension, one dimension after another.
+
+   * `flags' is a bitwise OR (`|') of zero or more planner flags, as
+     defined in *note Planner Flags::.
+
+
+\1f
+File: fftw3.info,  Node: Real-to-Real Transform Kinds,  Prev: Real-to-Real Transforms,  Up: Basic Interface
+
+4.3.6 Real-to-Real Transform Kinds
+----------------------------------
+
+FFTW currently supports 11 different r2r transform kinds, specified by
+one of the constants below.  For the precise definitions of these
+transforms, see *note What FFTW Really Computes::.  For a more
+colloquial introduction to these transform kinds, see *note More DFTs
+of Real Data::.
+
+   For dimension of size `n', there is a corresponding "logical"
+dimension `N' that determines the normalization (and the optimal
+factorization); the formula for `N' is given for each kind below.
+Also, with each transform kind is listed its corrsponding inverse
+transform.  FFTW computes unnormalized transforms: a transform followed
+by its inverse will result in the original data multiplied by `N' (or
+the product of the `N''s for each dimension, in multi-dimensions).  
+
+   * `FFTW_R2HC' computes a real-input DFT with output in "halfcomplex"
+     format, i.e. real and imaginary parts for a transform of size `n'
+     stored as: r0, r1, r2, r(n/2), i((n+1)/2-1), ..., i2, i1 (Logical
+     `N=n', inverse is `FFTW_HC2R'.)
+
+   * `FFTW_HC2R' computes the reverse of `FFTW_R2HC', above.  (Logical
+     `N=n', inverse is `FFTW_R2HC'.)
+
+   * `FFTW_DHT' computes a discrete Hartley transform.  (Logical `N=n',
+     inverse is `FFTW_DHT'.)  
+
+   * `FFTW_REDFT00' computes an REDFT00 transform, i.e. a DCT-I.
+     (Logical `N=2*(n-1)', inverse is `FFTW_REDFT00'.)  
+
+   * `FFTW_REDFT10' computes an REDFT10 transform, i.e. a DCT-II
+     (sometimes called "the" DCT).  (Logical `N=2*n', inverse is
+     `FFTW_REDFT01'.)
+
+   * `FFTW_REDFT01' computes an REDFT01 transform, i.e. a DCT-III
+     (sometimes called "the" IDCT, being the inverse of DCT-II).
+     (Logical `N=2*n', inverse is `FFTW_REDFT=10'.)  
+
+   * `FFTW_REDFT11' computes an REDFT11 transform, i.e. a DCT-IV.
+     (Logical `N=2*n', inverse is `FFTW_REDFT11'.)
+
+   * `FFTW_RODFT00' computes an RODFT00 transform, i.e. a DST-I.
+     (Logical `N=2*(n+1)', inverse is `FFTW_RODFT00'.)  
+
+   * `FFTW_RODFT10' computes an RODFT10 transform, i.e. a DST-II.
+     (Logical `N=2*n', inverse is `FFTW_RODFT01'.)
+
+   * `FFTW_RODFT01' computes an RODFT01 transform, i.e. a DST-III.
+     (Logical `N=2*n', inverse is `FFTW_RODFT=10'.)
+
+   * `FFTW_RODFT11' computes an RODFT11 transform, i.e. a DST-IV.
+     (Logical `N=2*n', inverse is `FFTW_RODFT11'.)
+
+
+\1f
+File: fftw3.info,  Node: Advanced Interface,  Next: Guru Interface,  Prev: Basic Interface,  Up: FFTW Reference
+
+4.4 Advanced Interface
+======================
+
+FFTW's "advanced" interface supplements the basic interface with four
+new planner routines, providing a new level of flexibility: you can plan
+a transform of multiple arrays simultaneously, operate on non-contiguous
+(strided) data, and transform a subset of a larger multi-dimensional
+array.  Other than these additional features, the planner operates in
+the same fashion as in the basic interface, and the resulting
+`fftw_plan' is used in the same way (*note Using Plans::).
+
+* Menu:
+
+* Advanced Complex DFTs::
+* Advanced Real-data DFTs::
+* Advanced Real-to-real Transforms::
+
+\1f
+File: fftw3.info,  Node: Advanced Complex DFTs,  Next: Advanced Real-data DFTs,  Prev: Advanced Interface,  Up: Advanced Interface
+
+4.4.1 Advanced Complex DFTs
+---------------------------
+
+     fftw_plan fftw_plan_many_dft(int rank, const int *n, int howmany,
+                                  fftw_complex *in, const int *inembed,
+                                  int istride, int idist,
+                                  fftw_complex *out, const int *onembed,
+                                  int ostride, int odist,
+                                  int sign, unsigned flags);
+
+   This routine plans multiple multidimensional complex DFTs, and it
+extends the `fftw_plan_dft' routine (*note Complex DFTs::) to compute
+`howmany' transforms, each having rank `rank' and size `n'.  In
+addition, the transform data need not be contiguous, but it may be laid
+out in memory with an arbitrary stride.  To account for these
+possibilities, `fftw_plan_many_dft' adds the new parameters `howmany',
+{`i',`o'}`nembed', {`i',`o'}`stride', and {`i',`o'}`dist'.  The FFTW
+basic interface (*note Complex DFTs::) provides routines specialized
+for ranks 1, 2, and 3, but the advanced interface handles only the
+general-rank case.
+
+   `howmany' is the number of transforms to compute.  The resulting
+plan computes `howmany' transforms, where the input of the `k'-th
+transform is at location `in+k*idist' (in C pointer arithmetic), and
+its output is at location `out+k*odist'.  Plans obtained in this way
+can often be faster than calling FFTW multiple times for the individual
+transforms.  The basic `fftw_plan_dft' interface corresponds to
+`howmany=1' (in which case the `dist' parameters are ignored).  
+
+   Each of the `howmany' transforms has rank `rank' and size `n', as in
+the basic interface.  In addition, the advanced interface allows the
+input and output arrays of each transform to be row-major subarrays of
+larger rank-`rank' arrays, described by `inembed' and `onembed'
+parameters, respectively.  {`i',`o'}`nembed' must be arrays of length
+`rank', and `n' should be elementwise less than or equal to
+{`i',`o'}`nembed'.  Passing `NULL' for an `nembed' parameter is
+equivalent to passing `n' (i.e. same physical and logical dimensions,
+as in the basic interface.)
+
+   The `stride' parameters indicate that the `j'-th element of the
+input or output arrays is located at `j*istride' or `j*ostride',
+respectively.  (For a multi-dimensional array, `j' is the ordinary
+row-major index.)  When combined with the `k'-th transform in a
+`howmany' loop, from above, this means that the (`j',`k')-th element is
+at `j*stride+k*dist'.  (The basic `fftw_plan_dft' interface corresponds
+to a stride of 1.)  
+
+   For in-place transforms, the input and output `stride' and `dist'
+parameters should be the same; otherwise, the planner may return `NULL'.
+
+   Arrays `n', `inembed', and `onembed' are not used after this
+function returns.  You can safely free or reuse them.
+
+   *Examples*: One transform of one 5 by 6 array contiguous in memory:
+        int rank = 2;
+        int n[] = {5, 6};
+        int howmany = 1;
+        int idist = odist = 0; /* unused because howmany = 1 */
+        int istride = ostride = 1; /* array is contiguous in memory */
+        int *inembed = n, *onembed = n;
+
+   Transform of three 5 by 6 arrays, each contiguous in memory, stored
+in memory one after another:
+        int rank = 2;
+        int n[] = {5, 6};
+        int howmany = 3;
+        int idist = odist = n[0]*n[1]; /* = 30, the distance in memory
+                                          between the first element
+                                          of the first array and the
+                                          first element of the second array */
+        int istride = ostride = 1; /* array is contiguous in memory */
+        int *inembed = n, *onembed = n;
+
+   Transform each column of a 2d array with 10 rows and 3 columns:
+        int rank = 1; /* not 2: we are computing 1d transforms */
+        int n[] = {10}; /* 1d transforms of length 10 */
+        int howmany = 3;
+        int idist = odist = 1;
+        int istride = ostride = 3; /* distance between two elements in
+                                      the same column */
+        int *inembed = n, *onembed = n;
+
+\1f
+File: fftw3.info,  Node: Advanced Real-data DFTs,  Next: Advanced Real-to-real Transforms,  Prev: Advanced Complex DFTs,  Up: Advanced Interface
+
+4.4.2 Advanced Real-data DFTs
+-----------------------------
+
+     fftw_plan fftw_plan_many_dft_r2c(int rank, const int *n, int howmany,
+                                      double *in, const int *inembed,
+                                      int istride, int idist,
+                                      fftw_complex *out, const int *onembed,
+                                      int ostride, int odist,
+                                      unsigned flags);
+     fftw_plan fftw_plan_many_dft_c2r(int rank, const int *n, int howmany,
+                                      fftw_complex *in, const int *inembed,
+                                      int istride, int idist,
+                                      double *out, const int *onembed,
+                                      int ostride, int odist,
+                                      unsigned flags);
+
+   Like `fftw_plan_many_dft', these two functions add `howmany',
+`nembed', `stride', and `dist' parameters to the `fftw_plan_dft_r2c'
+and `fftw_plan_dft_c2r' functions, but otherwise behave the same as the
+basic interface.
+
+   The interpretation of `howmany', `stride', and `dist' are the same
+as for `fftw_plan_many_dft', above.  Note that the `stride' and `dist'
+for the real array are in units of `double', and for the complex array
+are in units of `fftw_complex'.
+
+   If an `nembed' parameter is `NULL', it is interpreted as what it
+would be in the basic interface, as described in *note Real-data DFT
+Array Format::.  That is, for the complex array the size is assumed to
+be the same as `n', but with the last dimension cut roughly in half.
+For the real array, the size is assumed to be `n' if the transform is
+out-of-place, or `n' with the last dimension "padded" if the transform
+is in-place.
+
+   If an `nembed' parameter is non-`NULL', it is interpreted as the
+physical size of the corresponding array, in row-major order, just as
+for `fftw_plan_many_dft'.  In this case, each dimension of `nembed'
+should be `>=' what it would be in the basic interface (e.g. the halved
+or padded `n').
+
+   Arrays `n', `inembed', and `onembed' are not used after this
+function returns.  You can safely free or reuse them.
+
+\1f
+File: fftw3.info,  Node: Advanced Real-to-real Transforms,  Prev: Advanced Real-data DFTs,  Up: Advanced Interface
+
+4.4.3 Advanced Real-to-real Transforms
+--------------------------------------
+
+     fftw_plan fftw_plan_many_r2r(int rank, const int *n, int howmany,
+                                  double *in, const int *inembed,
+                                  int istride, int idist,
+                                  double *out, const int *onembed,
+                                  int ostride, int odist,
+                                  const fftw_r2r_kind *kind, unsigned flags);
+
+   Like `fftw_plan_many_dft', this functions adds `howmany', `nembed',
+`stride', and `dist' parameters to the `fftw_plan_r2r' function, but
+otherwise behave the same as the basic interface.  The interpretation
+of those additional parameters are the same as for
+`fftw_plan_many_dft'.  (Of course, the `stride' and `dist' parameters
+are now in units of `double', not `fftw_complex'.)
+
+   Arrays `n', `inembed', `onembed', and `kind' are not used after this
+function returns.  You can safely free or reuse them.
+
+\1f
+File: fftw3.info,  Node: Guru Interface,  Next: New-array Execute Functions,  Prev: Advanced Interface,  Up: FFTW Reference
+
+4.5 Guru Interface
+==================
+
+The "guru" interface to FFTW is intended to expose as much as possible
+of the flexibility in the underlying FFTW architecture.  It allows one
+to compute multi-dimensional "vectors" (loops) of multi-dimensional
+transforms, where each vector/transform dimension has an independent
+size and stride.  One can also use more general complex-number formats,
+e.g. separate real and imaginary arrays.
+
+   For those users who require the flexibility of the guru interface,
+it is important that they pay special attention to the documentation
+lest they shoot themselves in the foot.
+
+* Menu:
+
+* Interleaved and split arrays::
+* Guru vector and transform sizes::
+* Guru Complex DFTs::
+* Guru Real-data DFTs::
+* Guru Real-to-real Transforms::
+* 64-bit Guru Interface::
+
+\1f
+File: fftw3.info,  Node: Interleaved and split arrays,  Next: Guru vector and transform sizes,  Prev: Guru Interface,  Up: Guru Interface
+
+4.5.1 Interleaved and split arrays
+----------------------------------
+
+The guru interface supports two representations of complex numbers,
+which we call the interleaved and the split format.
+
+   The "interleaved" format is the same one used by the basic and
+advanced interfaces, and it is documented in *note Complex numbers::.
+In the interleaved format, you provide pointers to the real part of a
+complex number, and the imaginary part understood to be stored in the
+next memory location.  
+
+   The "split" format allows separate pointers to the real and
+imaginary parts of a complex array.  
+
+   Technically, the interleaved format is redundant, because you can
+always express an interleaved array in terms of a split array with
+appropriate pointers and strides.  On the other hand, the interleaved
+format is simpler to use, and it is common in practice.  Hence, FFTW
+supports it as a special case.
+
+\1f
+File: fftw3.info,  Node: Guru vector and transform sizes,  Next: Guru Complex DFTs,  Prev: Interleaved and split arrays,  Up: Guru Interface
+
+4.5.2 Guru vector and transform sizes
+-------------------------------------
+
+The guru interface introduces one basic new data structure,
+`fftw_iodim', that is used to specify sizes and strides for
+multi-dimensional transforms and vectors:
+
+     typedef struct {
+          int n;
+          int is;
+          int os;
+     } fftw_iodim;
+   
+   Here, `n' is the size of the dimension, and `is' and `os' are the
+strides of that dimension for the input and output arrays.  (The stride
+is the separation of consecutive elements along this dimension.)
+
+   The meaning of the stride parameter depends on the type of the array
+that the stride refers to.  _If the array is interleaved complex,
+strides are expressed in units of complex numbers (`fftw_complex').  If
+the array is split complex or real, strides are expressed in units of
+real numbers (`double')._  This convention is consistent with the usual
+pointer arithmetic in the C language.  An interleaved array is denoted
+by a pointer `p' to `fftw_complex', so that `p+1' points to the next
+complex number.  Split arrays are denoted by pointers to `double', in
+which case pointer arithmetic operates in units of `sizeof(double)'.  
+
+   The guru planner interfaces all take a (`rank', `dims[rank]') pair
+describing the transform size, and a (`howmany_rank',
+`howmany_dims[howmany_rank]') pair describing the "vector" size (a
+multi-dimensional loop of transforms to perform), where `dims' and
+`howmany_dims' are arrays of `fftw_iodim'.
+
+   For example, the `howmany' parameter in the advanced complex-DFT
+interface corresponds to `howmany_rank' = 1, `howmany_dims[0].n' =
+`howmany', `howmany_dims[0].is' = `idist', and `howmany_dims[0].os' =
+`odist'.  (To compute a single transform, you can just use
+`howmany_rank' = 0.)
+
+   A row-major multidimensional array with dimensions `n[rank]' (*note
+Row-major Format::) corresponds to `dims[i].n' = `n[i]' and the
+recurrence `dims[i].is' = `n[i+1] * dims[i+1].is' (similarly for `os').
+The stride of the last (`i=rank-1') dimension is the overall stride of
+the array.  e.g. to be equivalent to the advanced complex-DFT
+interface, you would have `dims[rank-1].is' = `istride' and
+`dims[rank-1].os' = `ostride'.  
+
+   In general, we only guarantee FFTW to return a non-`NULL' plan if
+the vector and transform dimensions correspond to a set of distinct
+indices, and for in-place transforms the input/output strides should be
+the same.
+
+\1f
+File: fftw3.info,  Node: Guru Complex DFTs,  Next: Guru Real-data DFTs,  Prev: Guru vector and transform sizes,  Up: Guru Interface
+
+4.5.3 Guru Complex DFTs
+-----------------------
+
+     fftw_plan fftw_plan_guru_dft(
+          int rank, const fftw_iodim *dims,
+          int howmany_rank, const fftw_iodim *howmany_dims,
+          fftw_complex *in, fftw_complex *out,
+          int sign, unsigned flags);
+
+     fftw_plan fftw_plan_guru_split_dft(
+          int rank, const fftw_iodim *dims,
+          int howmany_rank, const fftw_iodim *howmany_dims,
+          double *ri, double *ii, double *ro, double *io,
+          unsigned flags);
+
+   These two functions plan a complex-data, multi-dimensional DFT for
+the interleaved and split format, respectively.  Transform dimensions
+are given by (`rank', `dims') over a multi-dimensional vector (loop) of
+dimensions (`howmany_rank', `howmany_dims').  `dims' and `howmany_dims'
+should point to `fftw_iodim' arrays of length `rank' and
+`howmany_rank', respectively.
+
+   `flags' is a bitwise OR (`|') of zero or more planner flags, as
+defined in *note Planner Flags::.
+
+   In the `fftw_plan_guru_dft' function, the pointers `in' and `out'
+point to the interleaved input and output arrays, respectively.  The
+sign can be either -1 (= `FFTW_FORWARD') or +1 (= `FFTW_BACKWARD').  If
+the pointers are equal, the transform is in-place.
+
+   In the `fftw_plan_guru_split_dft' function, `ri' and `ii' point to
+the real and imaginary input arrays, and `ro' and `io' point to the
+real and imaginary output arrays.  The input and output pointers may be
+the same, indicating an in-place transform.  For example, for
+`fftw_complex' pointers `in' and `out', the corresponding parameters
+are:
+
+     ri = (double *) in;
+     ii = (double *) in + 1;
+     ro = (double *) out;
+     io = (double *) out + 1;
+
+   Because `fftw_plan_guru_split_dft' accepts split arrays, strides are
+expressed in units of `double'.  For a contiguous `fftw_complex' array,
+the overall stride of the transform should be 2, the distance between
+consecutive real parts or between consecutive imaginary parts; see
+*note Guru vector and transform sizes::.  Note that the dimension
+strides are applied equally to the real and imaginary parts; real and
+imaginary arrays with different strides are not supported.
+
+   There is no `sign' parameter in `fftw_plan_guru_split_dft'.  This
+function always plans for an `FFTW_FORWARD' transform.  To plan for an
+`FFTW_BACKWARD' transform, you can exploit the identity that the
+backwards DFT is equal to the forwards DFT with the real and imaginary
+parts swapped.  For example, in the case of the `fftw_complex' arrays
+above, the `FFTW_BACKWARD' transform is computed by the parameters:
+
+     ri = (double *) in + 1;
+     ii = (double *) in;
+     ro = (double *) out + 1;
+     io = (double *) out;
+
+\1f
+File: fftw3.info,  Node: Guru Real-data DFTs,  Next: Guru Real-to-real Transforms,  Prev: Guru Complex DFTs,  Up: Guru Interface
+
+4.5.4 Guru Real-data DFTs
+-------------------------
+
+     fftw_plan fftw_plan_guru_dft_r2c(
+          int rank, const fftw_iodim *dims,
+          int howmany_rank, const fftw_iodim *howmany_dims,
+          double *in, fftw_complex *out,
+          unsigned flags);
+
+     fftw_plan fftw_plan_guru_split_dft_r2c(
+          int rank, const fftw_iodim *dims,
+          int howmany_rank, const fftw_iodim *howmany_dims,
+          double *in, double *ro, double *io,
+          unsigned flags);
+
+     fftw_plan fftw_plan_guru_dft_c2r(
+          int rank, const fftw_iodim *dims,
+          int howmany_rank, const fftw_iodim *howmany_dims,
+          fftw_complex *in, double *out,
+          unsigned flags);
+
+     fftw_plan fftw_plan_guru_split_dft_c2r(
+          int rank, const fftw_iodim *dims,
+          int howmany_rank, const fftw_iodim *howmany_dims,
+          double *ri, double *ii, double *out,
+          unsigned flags);
+
+   Plan a real-input (r2c) or real-output (c2r), multi-dimensional DFT
+with transform dimensions given by (`rank', `dims') over a
+multi-dimensional vector (loop) of dimensions (`howmany_rank',
+`howmany_dims').  `dims' and `howmany_dims' should point to
+`fftw_iodim' arrays of length `rank' and `howmany_rank', respectively.
+As for the basic and advanced interfaces, an r2c transform is
+`FFTW_FORWARD' and a c2r transform is `FFTW_BACKWARD'.
+
+   The _last_ dimension of `dims' is interpreted specially: that
+dimension of the real array has size `dims[rank-1].n', but that
+dimension of the complex array has size `dims[rank-1].n/2+1' (division
+rounded down).  The strides, on the other hand, are taken to be exactly
+as specified.  It is up to the user to specify the strides
+appropriately for the peculiar dimensions of the data, and we do not
+guarantee that the planner will succeed (return non-`NULL') for any
+dimensions other than those described in *note Real-data DFT Array
+Format:: and generalized in *note Advanced Real-data DFTs::.  (That is,
+for an in-place transform, each individual dimension should be able to
+operate in place.)  
+
+   `in' and `out' point to the input and output arrays for r2c and c2r
+transforms, respectively.  For split arrays, `ri' and `ii' point to the
+real and imaginary input arrays for a c2r transform, and `ro' and `io'
+point to the real and imaginary output arrays for an r2c transform.
+`in' and `ro' or `ri' and `out' may be the same, indicating an in-place
+transform.   (In-place transforms where `in' and `io' or `ii' and `out'
+are the same are not currently supported.)
+
+   `flags' is a bitwise OR (`|') of zero or more planner flags, as
+defined in *note Planner Flags::.
+
+   In-place transforms of rank greater than 1 are currently only
+supported for interleaved arrays.  For split arrays, the planner will
+return `NULL'.  
+
+\1f
+File: fftw3.info,  Node: Guru Real-to-real Transforms,  Next: 64-bit Guru Interface,  Prev: Guru Real-data DFTs,  Up: Guru Interface
+
+4.5.5 Guru Real-to-real Transforms
+----------------------------------
+
+     fftw_plan fftw_plan_guru_r2r(int rank, const fftw_iodim *dims,
+                                  int howmany_rank,
+                                  const fftw_iodim *howmany_dims,
+                                  double *in, double *out,
+                                  const fftw_r2r_kind *kind,
+                                  unsigned flags);
+
+   Plan a real-to-real (r2r) multi-dimensional `FFTW_FORWARD' transform
+with transform dimensions given by (`rank', `dims') over a
+multi-dimensional vector (loop) of dimensions (`howmany_rank',
+`howmany_dims').  `dims' and `howmany_dims' should point to
+`fftw_iodim' arrays of length `rank' and `howmany_rank', respectively.
+
+   The transform kind of each dimension is given by the `kind'
+parameter, which should point to an array of length `rank'.  Valid
+`fftw_r2r_kind' constants are given in *note Real-to-Real Transform
+Kinds::.
+
+   `in' and `out' point to the real input and output arrays; they may
+be the same, indicating an in-place transform.
+
+   `flags' is a bitwise OR (`|') of zero or more planner flags, as
+defined in *note Planner Flags::.
+
+\1f
+File: fftw3.info,  Node: 64-bit Guru Interface,  Prev: Guru Real-to-real Transforms,  Up: Guru Interface
+
+4.5.6 64-bit Guru Interface
+---------------------------
+
+When compiled in 64-bit mode on a 64-bit architecture (where addresses
+are 64 bits wide), FFTW uses 64-bit quantities internally for all
+transform sizes, strides, and so on--you don't have to do anything
+special to exploit this.  However, in the ordinary FFTW interfaces, you
+specify the transform size by an `int' quantity, which is normally only
+32 bits wide.  This means that, even though FFTW is using 64-bit sizes
+internally, you cannot specify a single transform dimension larger than
+2^31-1 numbers.
+
+   We expect that few users will require transforms larger than this,
+but, for those who do, we provide a 64-bit version of the guru
+interface in which all sizes are specified as integers of type
+`ptrdiff_t' instead of `int'.  (`ptrdiff_t' is a signed integer type
+defined by the C standard to be wide enough to represent address
+differences, and thus must be at least 64 bits wide on a 64-bit
+machine.)  We stress that there is _no performance advantage_ to using
+this interface--the same internal FFTW code is employed regardless--and
+it is only necessary if you want to specify very large transform sizes.  
+
+   In particular, the 64-bit guru interface is a set of planner routines
+that are exactly the same as the guru planner routines, except that
+they are named with `guru64' instead of `guru' and they take arguments
+of type `fftw_iodim64' instead of `fftw_iodim'.  For example, instead
+of `fftw_plan_guru_dft', we have `fftw_plan_guru64_dft'.
+
+     fftw_plan fftw_plan_guru64_dft(
+          int rank, const fftw_iodim64 *dims,
+          int howmany_rank, const fftw_iodim64 *howmany_dims,
+          fftw_complex *in, fftw_complex *out,
+          int sign, unsigned flags);
+   
+   The `fftw_iodim64' type is similar to `fftw_iodim', with the same
+interpretation, except that it uses type `ptrdiff_t' instead of type
+`int'.
+
+     typedef struct {
+          ptrdiff_t n;
+          ptrdiff_t is;
+          ptrdiff_t os;
+     } fftw_iodim64;
+   
+   Every other `fftw_plan_guru' function also has a `fftw_plan_guru64'
+equivalent, but we do not repeat their documentation here since they
+are identical to the 32-bit versions except as noted above.
+
+\1f
+File: fftw3.info,  Node: New-array Execute Functions,  Next: Wisdom,  Prev: Guru Interface,  Up: FFTW Reference
+
+4.6 New-array Execute Functions
+===============================
+
+Normally, one executes a plan for the arrays with which the plan was
+created, by calling `fftw_execute(plan)' as described in *note Using
+Plans::.  However, it is possible for sophisticated users to apply a
+given plan to a _different_ array using the "new-array execute"
+functions detailed below, provided that the following conditions are
+met:
+
+   * The array size, strides, etcetera are the same (since those are
+     set by the plan).
+
+   * The input and output arrays are the same (in-place) or different
+     (out-of-place) if the plan was originally created to be in-place or
+     out-of-place, respectively.
+
+   * For split arrays, the separations between the real and imaginary
+     parts, `ii-ri' and `io-ro', are the same as they were for the
+     input and output arrays when the plan was created.  (This
+     condition is automatically satisfied for interleaved arrays.)
+
+   * The "alignment" of the new input/output arrays is the same as that
+     of the input/output arrays when the plan was created, unless the
+     plan was created with the `FFTW_UNALIGNED' flag.  Here, the
+     alignment is a platform-dependent quantity (for example, it is the
+     address modulo 16 if SSE SIMD instructions are used, but the
+     address modulo 4 for non-SIMD single-precision FFTW on the same
+     machine).  In general, only arrays allocated with `fftw_malloc'
+     are guaranteed to be equally aligned (*note SIMD alignment and
+     fftw_malloc::).
+
+
+   The alignment issue is especially critical, because if you don't use
+`fftw_malloc' then you may have little control over the alignment of
+arrays in memory.  For example, neither the C++ `new' function nor the
+Fortran `allocate' statement provide strong enough guarantees about
+data alignment.  If you don't use `fftw_malloc', therefore, you
+probably have to use `FFTW_UNALIGNED' (which disables most SIMD
+support).  If possible, it is probably better for you to simply create
+multiple plans (creating a new plan is quick once one exists for a
+given size), or better yet re-use the same array for your transforms.
+
+   If you are tempted to use the new-array execute interface because you
+want to transform a known bunch of arrays of the same size, you should
+probably go use the advanced interface instead (*note Advanced
+Interface::)).
+
+   The new-array execute functions are:
+
+     void fftw_execute_dft(
+          const fftw_plan p,
+          fftw_complex *in, fftw_complex *out);
+
+     void fftw_execute_split_dft(
+          const fftw_plan p,
+          double *ri, double *ii, double *ro, double *io);
+
+     void fftw_execute_dft_r2c(
+          const fftw_plan p,
+          double *in, fftw_complex *out);
+
+     void fftw_execute_split_dft_r2c(
+          const fftw_plan p,
+          double *in, double *ro, double *io);
+
+     void fftw_execute_dft_c2r(
+          const fftw_plan p,
+          fftw_complex *in, double *out);
+
+     void fftw_execute_split_dft_c2r(
+          const fftw_plan p,
+          double *ri, double *ii, double *out);
+
+     void fftw_execute_r2r(
+          const fftw_plan p,
+          double *in, double *out);
+   
+   These execute the `plan' to compute the corresponding transform on
+the input/output arrays specified by the subsequent arguments.  The
+input/output array arguments have the same meanings as the ones passed
+to the guru planner routines in the preceding sections.  The `plan' is
+not modified, and these routines can be called as many times as
+desired, or intermixed with calls to the ordinary `fftw_execute'.
+
+   The `plan' _must_ have been created for the transform type
+corresponding to the execute function, e.g. it must be a complex-DFT
+plan for `fftw_execute_dft'.  Any of the planner routines for that
+transform type, from the basic to the guru interface, could have been
+used to create the plan, however.
+
+\1f
+File: fftw3.info,  Node: Wisdom,  Next: What FFTW Really Computes,  Prev: New-array Execute Functions,  Up: FFTW Reference
+
+4.7 Wisdom
+==========
+
+This section documents the FFTW mechanism for saving and restoring
+plans from disk.  This mechanism is called "wisdom".
+
+* Menu:
+
+* Wisdom Export::
+* Wisdom Import::
+* Forgetting Wisdom::
+* Wisdom Utilities::
+
+\1f
+File: fftw3.info,  Node: Wisdom Export,  Next: Wisdom Import,  Prev: Wisdom,  Up: Wisdom
+
+4.7.1 Wisdom Export
+-------------------
+
+     int fftw_export_wisdom_to_filename(const char *filename);
+     void fftw_export_wisdom_to_file(FILE *output_file);
+     char *fftw_export_wisdom_to_string(void);
+     void fftw_export_wisdom(void (*write_char)(char c, void *), void *data);
+
+   These functions allow you to export all currently accumulated wisdom
+in a form from which it can be later imported and restored, even during
+a separate run of the program. (*Note Words of Wisdom-Saving Plans::.)
+The current store of wisdom is not affected by calling any of these
+routines.
+
+   `fftw_export_wisdom' exports the wisdom to any output medium, as
+specified by the callback function `write_char'. `write_char' is a
+`putc'-like function that writes the character `c' to some output; its
+second parameter is the `data' pointer passed to `fftw_export_wisdom'.
+For convenience, the following three "wrapper" routines are provided:
+
+   `fftw_export_wisdom_to_filename' writes wisdom to a file named
+`filename' (which is created or overwritten), returning `1' on success
+and `0' on failure.  A lower-level function, which requires you to open
+and close the file yourself (e.g. if you want to write wisdom to a
+portion of a larger file) is `fftw_export_wisdom_to_file'.  This writes
+the wisdom to the current position in `output_file', which should be
+open with write permission; upon exit, the file remains open and is
+positioned at the end of the wisdom data.
+
+   `fftw_export_wisdom_to_string' returns a pointer to a
+`NULL'-terminated string holding the wisdom data. This string is
+dynamically allocated, and it is the responsibility of the caller to
+deallocate it with `free' when it is no longer needed.
+
+   All of these routines export the wisdom in the same format, which we
+will not document here except to say that it is LISP-like ASCII text
+that is insensitive to white space.
+
+\1f
+File: fftw3.info,  Node: Wisdom Import,  Next: Forgetting Wisdom,  Prev: Wisdom Export,  Up: Wisdom
+
+4.7.2 Wisdom Import
+-------------------
+
+     int fftw_import_system_wisdom(void);
+     int fftw_import_wisdom_from_filename(const char *filename);
+     int fftw_import_wisdom_from_string(const char *input_string);
+     int fftw_import_wisdom(int (*read_char)(void *), void *data);
+
+   These functions import wisdom into a program from data stored by the
+`fftw_export_wisdom' functions above. (*Note Words of Wisdom-Saving
+Plans::.)  The imported wisdom replaces any wisdom already accumulated
+by the running program.
+
+   `fftw_import_wisdom' imports wisdom from any input medium, as
+specified by the callback function `read_char'. `read_char' is a
+`getc'-like function that returns the next character in the input; its
+parameter is the `data' pointer passed to `fftw_import_wisdom'. If the
+end of the input data is reached (which should never happen for valid
+data), `read_char' should return `EOF' (as defined in `<stdio.h>').
+For convenience, the following three "wrapper" routines are provided:
+
+   `fftw_import_wisdom_from_filename' reads wisdom from a file named
+`filename'.  A lower-level function, which requires you to open and
+close the file yourself (e.g. if you want to read wisdom from a portion
+of a larger file) is `fftw_import_wisdom_from_file'. This reads wisdom
+from the current position in `input_file' (which should be open with
+read permission); upon exit, the file remains open, but the position of
+the read pointer is unspecified.
+
+   `fftw_import_wisdom_from_string' reads wisdom from the
+`NULL'-terminated string `input_string'.
+
+   `fftw_import_system_wisdom' reads wisdom from an
+implementation-defined standard file (`/etc/fftw/wisdom' on Unix and
+GNU systems).  
+
+   The return value of these import routines is `1' if the wisdom was
+read successfully and `0' otherwise. Note that, in all of these
+functions, any data in the input stream past the end of the wisdom data
+is simply ignored.
+
+\1f
+File: fftw3.info,  Node: Forgetting Wisdom,  Next: Wisdom Utilities,  Prev: Wisdom Import,  Up: Wisdom
+
+4.7.3 Forgetting Wisdom
+-----------------------
+
+     void fftw_forget_wisdom(void);
+
+   Calling `fftw_forget_wisdom' causes all accumulated `wisdom' to be
+discarded and its associated memory to be freed. (New `wisdom' can
+still be gathered subsequently, however.)
+
+\1f
+File: fftw3.info,  Node: Wisdom Utilities,  Prev: Forgetting Wisdom,  Up: Wisdom
+
+4.7.4 Wisdom Utilities
+----------------------
+
+FFTW includes two standalone utility programs that deal with wisdom.  We
+merely summarize them here, since they come with their own `man' pages
+for Unix and GNU systems (with HTML versions on our web site).
+
+   The first program is `fftw-wisdom' (or `fftwf-wisdom' in single
+precision, etcetera), which can be used to create a wisdom file
+containing plans for any of the transform sizes and types supported by
+FFTW.  It is preferable to create wisdom directly from your executable
+(*note Caveats in Using Wisdom::), but this program is useful for
+creating global wisdom files for `fftw_import_system_wisdom'.  
+
+   The second program is `fftw-wisdom-to-conf', which takes a wisdom
+file as input and produces a "configuration routine" as output.  The
+latter is a C subroutine that you can compile and link into your
+program, replacing a routine of the same name in the FFTW library, that
+determines which parts of FFTW are callable by your program.
+`fftw-wisdom-to-conf' produces a configuration routine that links to
+only those parts of FFTW needed by the saved plans in the wisdom,
+greatly reducing the size of statically linked executables (which should
+only attempt to create plans corresponding to those in the wisdom,
+however).  
+
+\1f
+File: fftw3.info,  Node: What FFTW Really Computes,  Prev: Wisdom,  Up: FFTW Reference
+
+4.8 What FFTW Really Computes
+=============================
+
+In this section, we provide precise mathematical definitions for the
+transforms that FFTW computes.  These transform definitions are fairly
+standard, but some authors follow slightly different conventions for the
+normalization of the transform (the constant factor in front) and the
+sign of the complex exponent.  We begin by presenting the
+one-dimensional (1d) transform definitions, and then give the
+straightforward extension to multi-dimensional transforms.
+
+* Menu:
+
+* The 1d Discrete Fourier Transform (DFT)::
+* The 1d Real-data DFT::
+* 1d Real-even DFTs (DCTs)::
+* 1d Real-odd DFTs (DSTs)::
+* 1d Discrete Hartley Transforms (DHTs)::
+* Multi-dimensional Transforms::
+
+\1f
+File: fftw3.info,  Node: The 1d Discrete Fourier Transform (DFT),  Next: The 1d Real-data DFT,  Prev: What FFTW Really Computes,  Up: What FFTW Really Computes
+
+4.8.1 The 1d Discrete Fourier Transform (DFT)
+---------------------------------------------
+
+The forward (`FFTW_FORWARD') discrete Fourier transform (DFT) of a 1d
+complex array X of size n computes an array Y, where:  Y[k] = sum for j = 0 to (n - 1) of X[j] * exp(-2 pi j k sqrt(-1)/n) .
+   The backward (`FFTW_BACKWARD') DFT computes:  Y[k] = sum for j = 0 to (n - 1) of X[j] * exp(2 pi j k sqrt(-1)/n) .
+   FFTW computes an unnormalized transform, in that there is no
+coefficient in front of the summation in the DFT.  In other words,
+applying the forward and then the backward transform will multiply the
+input by n.
+
+   From above, an `FFTW_FORWARD' transform corresponds to a sign of -1
+in the exponent of the DFT.  Note also that we use the standard
+"in-order" output ordering--the k-th output corresponds to the
+frequency k/n (or k/T, where T is your total sampling period).  For
+those who like to think in terms of positive and negative frequencies,
+this means that the positive frequencies are stored in the first half
+of the output and the negative frequencies are stored in backwards
+order in the second half of the output.  (The frequency -k/n is the
+same as the frequency (n-k)/n.)
+
+\1f
+File: fftw3.info,  Node: The 1d Real-data DFT,  Next: 1d Real-even DFTs (DCTs),  Prev: The 1d Discrete Fourier Transform (DFT),  Up: What FFTW Really Computes
+
+4.8.2 The 1d Real-data DFT
+--------------------------
+
+The real-input (r2c) DFT in FFTW computes the _forward_ transform Y of
+the size `n' real array X, exactly as defined above, i.e.   Y[k] = sum for j = 0 to (n - 1) of X[j] * exp(-2 pi j k sqrt(-1)/n) .
+   This output array Y can easily be shown to possess the "Hermitian"
+symmetry Y[k] = Y[n-k]*, where we take Y to be periodic so that Y[n] =
+Y[0].
+
+   As a result of this symmetry, half of the output Y is redundant
+(being the complex conjugate of the other half), and so the 1d r2c
+transforms only output elements 0...n/2 of Y (n/2+1 complex numbers),
+where the division by 2 is rounded down.
+
+   Moreover, the Hermitian symmetry implies that Y[0] and, if n is
+even, the Y[n/2] element, are purely real.  So, for the `R2HC' r2r
+transform, these elements are not stored in the halfcomplex output
+format.  
+
+   The c2r and `H2RC' r2r transforms compute the backward DFT of the
+_complex_ array X with Hermitian symmetry, stored in the r2c/`R2HC'
+output formats, respectively, where the backward transform is defined
+exactly as for the complex case:  Y[k] = sum for j = 0 to (n - 1) of X[j] * exp(2 pi j k sqrt(-1)/n) .
+   The outputs `Y' of this transform can easily be seen to be purely
+real, and are stored as an array of real numbers.
+
+   Like FFTW's complex DFT, these transforms are unnormalized.  In other
+words, applying the real-to-complex (forward) and then the
+complex-to-real (backward) transform will multiply the input by n.
+
+\1f
+File: fftw3.info,  Node: 1d Real-even DFTs (DCTs),  Next: 1d Real-odd DFTs (DSTs),  Prev: The 1d Real-data DFT,  Up: What FFTW Really Computes
+
+4.8.3 1d Real-even DFTs (DCTs)
+------------------------------
+
+The Real-even symmetry DFTs in FFTW are exactly equivalent to the
+unnormalized forward (and backward) DFTs as defined above, where the
+input array X of length N is purely real and is also "even" symmetry.
+In this case, the output array is likewise real and even symmetry.  
+
+   For the case of `REDFT00', this even symmetry means that X[j] =
+X[N-j], where we take X to be periodic so that X[N] = X[0].  Because of
+this redundancy, only the first n real numbers are actually stored,
+where N = 2(n-1).
+
+   The proper definition of even symmetry for `REDFT10', `REDFT01', and
+`REDFT11' transforms is somewhat more intricate because of the shifts
+by 1/2 of the input and/or output, although the corresponding boundary
+conditions are given in *note Real even/odd DFTs (cosine/sine
+transforms)::.  Because of the even symmetry, however, the sine terms
+in the DFT all cancel and the remaining cosine terms are written
+explicitly below.  This formulation often leads people to call such a
+transform a "discrete cosine transform" (DCT), although it is really
+just a special case of the DFT.  
+
+   In each of the definitions below, we transform a real array X of
+length n to a real array Y of length n:
+
+REDFT00 (DCT-I)
+...............
+
+An `REDFT00' transform (type-I DCT) in FFTW is defined by: Y[k] = X[0]
++ (-1)^k X[n-1] + 2 (sum for j = 1 to n-2 of X[j] cos(pi jk /(n-1))).
+Note that this transform is not defined for n=1.  For n=2, the
+summation term above is dropped as you might expect.
+
+REDFT10 (DCT-II)
+................
+
+An `REDFT10' transform (type-II DCT, sometimes called "the" DCT) in
+FFTW is defined by: Y[k] = 2 (sum for j = 0 to n-1 of X[j] cos(pi
+(j+1/2) k / n)).
+
+REDFT01 (DCT-III)
+.................
+
+An `REDFT01' transform (type-III DCT) in FFTW is defined by: Y[k] =
+X[0] + 2 (sum for j = 1 to n-1 of X[j] cos(pi j (k+1/2) / n)).  In the
+case of n=1, this reduces to Y[0] = X[0].  Up to a scale factor (see
+below), this is the inverse of `REDFT10' ("the" DCT), and so the
+`REDFT01' (DCT-III) is sometimes called the "IDCT".  
+
+REDFT11 (DCT-IV)
+................
+
+An `REDFT11' transform (type-IV DCT) in FFTW is defined by: Y[k] = 2
+(sum for j = 0 to n-1 of X[j] cos(pi (j+1/2) (k+1/2) / n)).
+
+Inverses and Normalization
+..........................
+
+These definitions correspond directly to the unnormalized DFTs used
+elsewhere in FFTW (hence the factors of 2 in front of the summations).
+The unnormalized inverse of `REDFT00' is `REDFT00', of `REDFT10' is
+`REDFT01' and vice versa, and of `REDFT11' is `REDFT11'.  Each
+unnormalized inverse results in the original array multiplied by N,
+where N is the _logical_ DFT size.  For `REDFT00', N=2(n-1) (note that
+n=1 is not defined); otherwise, N=2n.  
+
+   In defining the discrete cosine transform, some authors also include
+additional factors of sqrt(2) (or its inverse) multiplying selected
+inputs and/or outputs.  This is a mostly cosmetic change that makes the
+transform orthogonal, but sacrifices the direct equivalence to a
+symmetric DFT.
+
+\1f
+File: fftw3.info,  Node: 1d Real-odd DFTs (DSTs),  Next: 1d Discrete Hartley Transforms (DHTs),  Prev: 1d Real-even DFTs (DCTs),  Up: What FFTW Really Computes
+
+4.8.4 1d Real-odd DFTs (DSTs)
+-----------------------------
+
+The Real-odd symmetry DFTs in FFTW are exactly equivalent to the
+unnormalized forward (and backward) DFTs as defined above, where the
+input array X of length N is purely real and is also "odd" symmetry.  In
+this case, the output is odd symmetry and purely imaginary.  
+
+   For the case of `RODFT00', this odd symmetry means that X[j] =
+-X[N-j], where we take X to be periodic so that X[N] = X[0].  Because
+of this redundancy, only the first n real numbers starting at j=1 are
+actually stored (the j=0 element is zero), where N = 2(n+1).
+
+   The proper definition of odd symmetry for `RODFT10', `RODFT01', and
+`RODFT11' transforms is somewhat more intricate because of the shifts
+by 1/2 of the input and/or output, although the corresponding boundary
+conditions are given in *note Real even/odd DFTs (cosine/sine
+transforms)::.  Because of the odd symmetry, however, the cosine terms
+in the DFT all cancel and the remaining sine terms are written
+explicitly below.  This formulation often leads people to call such a
+transform a "discrete sine transform" (DST), although it is really just
+a special case of the DFT.  
+
+   In each of the definitions below, we transform a real array X of
+length n to a real array Y of length n:
+
+RODFT00 (DST-I)
+...............
+
+An `RODFT00' transform (type-I DST) in FFTW is defined by: Y[k] = 2
+(sum for j = 0 to n-1 of X[j] sin(pi (j+1)(k+1) / (n+1))).
+
+RODFT10 (DST-II)
+................
+
+An `RODFT10' transform (type-II DST) in FFTW is defined by: Y[k] = 2
+(sum for j = 0 to n-1 of X[j] sin(pi (j+1/2) (k+1) / n)).
+
+RODFT01 (DST-III)
+.................
+
+An `RODFT01' transform (type-III DST) in FFTW is defined by: Y[k] =
+(-1)^k X[n-1] + 2 (sum for j = 0 to n-2 of X[j] sin(pi (j+1) (k+1/2) /
+n)).  In the case of n=1, this reduces to Y[0] = X[0].
+
+RODFT11 (DST-IV)
+................
+
+An `RODFT11' transform (type-IV DST) in FFTW is defined by: Y[k] = 2
+(sum for j = 0 to n-1 of X[j] sin(pi (j+1/2) (k+1/2) / n)).
+
+Inverses and Normalization
+..........................
+
+These definitions correspond directly to the unnormalized DFTs used
+elsewhere in FFTW (hence the factors of 2 in front of the summations).
+The unnormalized inverse of `RODFT00' is `RODFT00', of `RODFT10' is
+`RODFT01' and vice versa, and of `RODFT11' is `RODFT11'.  Each
+unnormalized inverse results in the original array multiplied by N,
+where N is the _logical_ DFT size.  For `RODFT00', N=2(n+1); otherwise,
+N=2n.  
+
+   In defining the discrete sine transform, some authors also include
+additional factors of sqrt(2) (or its inverse) multiplying selected
+inputs and/or outputs.  This is a mostly cosmetic change that makes the
+transform orthogonal, but sacrifices the direct equivalence to an
+antisymmetric DFT.
+
+\1f
+File: fftw3.info,  Node: 1d Discrete Hartley Transforms (DHTs),  Next: Multi-dimensional Transforms,  Prev: 1d Real-odd DFTs (DSTs),  Up: What FFTW Really Computes
+
+4.8.5 1d Discrete Hartley Transforms (DHTs)
+-------------------------------------------
+
+The discrete Hartley transform (DHT) of a 1d real array X of size n
+computes a real array Y of the same size, where: Y[k] = sum for j = 0 to (n - 1) of X[j] * [cos(2 pi j k / n) + sin(2 pi j k / n)].
+   FFTW computes an unnormalized transform, in that there is no
+coefficient in front of the summation in the DHT.  In other words,
+applying the transform twice (the DHT is its own inverse) will multiply
+the input by n.
+
+\1f
+File: fftw3.info,  Node: Multi-dimensional Transforms,  Prev: 1d Discrete Hartley Transforms (DHTs),  Up: What FFTW Really Computes
+
+4.8.6 Multi-dimensional Transforms
+----------------------------------
+
+The multi-dimensional transforms of FFTW, in general, compute simply the
+separable product of the given 1d transform along each dimension of the
+array.  Since each of these transforms is unnormalized, computing the
+forward followed by the backward/inverse multi-dimensional transform
+will result in the original array scaled by the product of the
+normalization factors for each dimension (e.g. the product of the
+dimension sizes, for a multi-dimensional DFT).
+
+   The definition of FFTW's multi-dimensional DFT of real data (r2c)
+deserves special attention.  In this case, we logically compute the full
+multi-dimensional DFT of the input data; since the input data are purely
+real, the output data have the Hermitian symmetry and therefore only one
+non-redundant half need be stored.  More specifically, for an n[0] x
+n[1] x n[2] x ... x n[d-1]  multi-dimensional real-input DFT, the full
+(logical) complex output array Y[k[0], k[1], ..., k[d-1]] has the
+symmetry: Y[k[0], k[1], ..., k[d-1]] = Y[n[0] - k[0], n[1] - k[1], ...,
+n[d-1] - k[d-1]]* (where each dimension is periodic).  Because of this
+symmetry, we only store the k[d-1] = 0...n[d-1]/2 elements of the
+_last_ dimension (division by 2 is rounded down).  (We could instead
+have cut any other dimension in half, but the last dimension proved
+computationally convenient.)  This results in the peculiar array format
+described in more detail by *note Real-data DFT Array Format::.
+
+   The multi-dimensional c2r transform is simply the unnormalized
+inverse of the r2c transform.  i.e. it is the same as FFTW's complex
+backward multi-dimensional DFT, operating on a Hermitian input array in
+the peculiar format mentioned above and outputting a real array (since
+the DFT output is purely real).
+
+   We should remind the user that the separable product of 1d transforms
+along each dimension, as computed by FFTW, is not always the same thing
+as the usual multi-dimensional transform.  A multi-dimensional `R2HC'
+(or `HC2R') transform is not identical to the multi-dimensional DFT,
+requiring some post-processing to combine the requisite real and
+imaginary parts, as was described in *note The Halfcomplex-format
+DFT::.  Likewise, FFTW's multidimensional `FFTW_DHT' r2r transform is
+not the same thing as the logical multi-dimensional discrete Hartley
+transform defined in the literature, as discussed in *note The Discrete
+Hartley Transform::.
+
+\1f
+File: fftw3.info,  Node: Multi-threaded FFTW,  Next: Distributed-memory FFTW with MPI,  Prev: FFTW Reference,  Up: Top
+
+5 Multi-threaded FFTW
+*********************
+
+In this chapter we document the parallel FFTW routines for
+shared-memory parallel hardware.  These routines, which support
+parallel one- and multi-dimensional transforms of both real and complex
+data, are the easiest way to take advantage of multiple processors with
+FFTW.  They work just like the corresponding uniprocessor transform
+routines, except that you have an extra initialization routine to call,
+and there is a routine to set the number of threads to employ.  Any
+program that uses the uniprocessor FFTW can therefore be trivially
+modified to use the multi-threaded FFTW.
+
+   A shared-memory machine is one in which all CPUs can directly access
+the same main memory, and such machines are now common due to the
+ubiquity of multi-core CPUs.  FFTW's multi-threading support allows you
+to utilize these additional CPUs transparently from a single program.
+However, this does not necessarily translate into performance
+gains--when multiple threads/CPUs are employed, there is an overhead
+required for synchronization that may outweigh the computatational
+parallelism.  Therefore, you can only benefit from threads if your
+problem is sufficiently large.  
+
+* Menu:
+
+* Installation and Supported Hardware/Software::
+* Usage of Multi-threaded FFTW::
+* How Many Threads to Use?::
+* Thread safety::
+
+\1f
+File: fftw3.info,  Node: Installation and Supported Hardware/Software,  Next: Usage of Multi-threaded FFTW,  Prev: Multi-threaded FFTW,  Up: Multi-threaded FFTW
+
+5.1 Installation and Supported Hardware/Software
+================================================
+
+All of the FFTW threads code is located in the `threads' subdirectory
+of the FFTW package.  On Unix systems, the FFTW threads libraries and
+header files can be automatically configured, compiled, and installed
+along with the uniprocessor FFTW libraries simply by including
+`--enable-threads' in the flags to the `configure' script (*note
+Installation on Unix::), or `--enable-openmp' to use OpenMP
+(http://www.openmp.org) threads.  
+
+   The threads routines require your operating system to have some sort
+of shared-memory threads support.  Specifically, the FFTW threads
+package works with POSIX threads (available on most Unix variants, from
+GNU/Linux to MacOS X) and Win32 threads.  OpenMP threads, which are
+supported in many common compilers (e.g. gcc) are also supported, and
+may give better performance on some systems.  (OpenMP threads are also
+useful if you are employing OpenMP in your own code, in order to
+minimize conflicts between threading models.)  If you have a
+shared-memory machine that uses a different threads API, it should be a
+simple matter of programming to include support for it; see the file
+`threads/threads.c' for more detail.
+
+   You can compile FFTW with _both_ `--enable-threads' and
+`--enable-openmp' at the same time, since they install libraries with
+different names (`fftw3_threads' and `fftw3_omp', as described below).
+However, your programs may only link to _one_ of these two libraries at
+a time.
+
+   Ideally, of course, you should also have multiple processors in
+order to get any benefit from the threaded transforms.
+
+\1f
+File: fftw3.info,  Node: Usage of Multi-threaded FFTW,  Next: How Many Threads to Use?,  Prev: Installation and Supported Hardware/Software,  Up: Multi-threaded FFTW
+
+5.2 Usage of Multi-threaded FFTW
+================================
+
+Here, it is assumed that the reader is already familiar with the usage
+of the uniprocessor FFTW routines, described elsewhere in this manual.
+We only describe what one has to change in order to use the
+multi-threaded routines.
+
+   First, programs using the parallel complex transforms should be
+linked with `-lfftw3_threads -lfftw3 -lm' on Unix, or `-lfftw3_omp
+-lfftw3 -lm' if you compiled with OpenMP. You will also need to link
+with whatever library is responsible for threads on your system (e.g.
+`-lpthread' on GNU/Linux) or include whatever compiler flag enables
+OpenMP (e.g. `-fopenmp' with gcc).  
+
+   Second, before calling _any_ FFTW routines, you should call the
+function:
+
+     int fftw_init_threads(void);
+   
+   This function, which need only be called once, performs any one-time
+initialization required to use threads on your system.  It returns zero
+if there was some error (which should not happen under normal
+circumstances) and a non-zero value otherwise.
+
+   Third, before creating a plan that you want to parallelize, you
+should call:
+
+     void fftw_plan_with_nthreads(int nthreads);
+   
+   The `nthreads' argument indicates the number of threads you want
+FFTW to use (or actually, the maximum number).  All plans subsequently
+created with any planner routine will use that many threads.  You can
+call `fftw_plan_with_nthreads', create some plans, call
+`fftw_plan_with_nthreads' again with a different argument, and create
+some more plans for a new number of threads.  Plans already created
+before a call to `fftw_plan_with_nthreads' are unaffected.  If you pass
+an `nthreads' argument of `1' (the default), threads are disabled for
+subsequent plans.
+
+   With OpenMP, to configure FFTW to use all of the currently running
+OpenMP threads (set by `omp_set_num_threads(nthreads)' or by the
+`OMP_NUM_THREADS' environment variable), you can do:
+`fftw_plan_with_nthreads(omp_get_max_threads())'. (The `omp_' OpenMP
+functions are declared via `#include <omp.h>'.)
+
+   Given a plan, you then execute it as usual with
+`fftw_execute(plan)', and the execution will use the number of threads
+specified when the plan was created.  When done, you destroy it as
+usual with `fftw_destroy_plan'.  As described in *note Thread safety::,
+plan _execution_ is thread-safe, but plan creation and destruction are
+_not_: you should create/destroy plans only from a single thread, but
+can safely execute multiple plans in parallel.
+
+   There is one additional routine: if you want to get rid of all memory
+and other resources allocated internally by FFTW, you can call:
+
+     void fftw_cleanup_threads(void);
+   
+   which is much like the `fftw_cleanup()' function except that it also
+gets rid of threads-related data.  You must _not_ execute any
+previously created plans after calling this function.
+
+   We should also mention one other restriction: if you save wisdom
+from a program using the multi-threaded FFTW, that wisdom _cannot be
+used_ by a program using only the single-threaded FFTW (i.e. not calling
+`fftw_init_threads').  *Note Words of Wisdom-Saving Plans::.
+
+\1f
+File: fftw3.info,  Node: How Many Threads to Use?,  Next: Thread safety,  Prev: Usage of Multi-threaded FFTW,  Up: Multi-threaded FFTW
+
+5.3 How Many Threads to Use?
+============================
+
+There is a fair amount of overhead involved in synchronizing threads,
+so the optimal number of threads to use depends upon the size of the
+transform as well as on the number of processors you have.
+
+   As a general rule, you don't want to use more threads than you have
+processors.  (Using more threads will work, but there will be extra
+overhead with no benefit.)  In fact, if the problem size is too small,
+you may want to use fewer threads than you have processors.
+
+   You will have to experiment with your system to see what level of
+parallelization is best for your problem size.  Typically, the problem
+will have to involve at least a few thousand data points before threads
+become beneficial.  If you plan with `FFTW_PATIENT', it will
+automatically disable threads for sizes that don't benefit from
+parallelization.  
+
+\1f
+File: fftw3.info,  Node: Thread safety,  Prev: How Many Threads to Use?,  Up: Multi-threaded FFTW
+
+5.4 Thread safety
+=================
+
+Users writing multi-threaded programs (including OpenMP) must concern
+themselves with the "thread safety" of the libraries they use--that is,
+whether it is safe to call routines in parallel from multiple threads.
+FFTW can be used in such an environment, but some care must be taken
+because the planner routines share data (e.g. wisdom and trigonometric
+tables) between calls and plans.
+
+   The upshot is that the only thread-safe (re-entrant) routine in FFTW
+is `fftw_execute' (and the new-array variants thereof).  All other
+routines (e.g. the planner) should only be called from one thread at a
+time.  So, for example, you can wrap a semaphore lock around any calls
+to the planner; even more simply, you can just create all of your plans
+from one thread.  We do not think this should be an important
+restriction (FFTW is designed for the situation where the only
+performance-sensitive code is the actual execution of the transform),
+and the benefits of shared data between plans are great.
+
+   Note also that, since the plan is not modified by `fftw_execute', it
+is safe to execute the _same plan_ in parallel by multiple threads.
+However, since a given plan operates by default on a fixed array, you
+need to use one of the new-array execute functions (*note New-array
+Execute Functions::) so that different threads compute the transform of
+different data.
+
+   (Users should note that these comments only apply to programs using
+shared-memory threads or OpenMP.  Parallelism using MPI or forked
+processes involves a separate address-space and global variables for
+each process, and is not susceptible to problems of this sort.)
+
+   If you are configured FFTW with the `--enable-debug' or
+`--enable-debug-malloc' flags (*note Installation on Unix::), then
+`fftw_execute' is not thread-safe.  These flags are not documented
+because they are intended only for developing and debugging FFTW, but
+if you must use `--enable-debug' then you should also specifically pass
+`--disable-debug-malloc' for `fftw_execute' to be thread-safe.
+
+\1f
+File: fftw3.info,  Node: Distributed-memory FFTW with MPI,  Next: Calling FFTW from Modern Fortran,  Prev: Multi-threaded FFTW,  Up: Top
+
+6 Distributed-memory FFTW with MPI
+**********************************
+
+In this chapter we document the parallel FFTW routines for parallel
+systems supporting the MPI message-passing interface.  Unlike the
+shared-memory threads described in the previous chapter, MPI allows you
+to use _distributed-memory_ parallelism, where each CPU has its own
+separate memory, and which can scale up to clusters of many thousands
+of processors.  This capability comes at a price, however: each process
+only stores a _portion_ of the data to be transformed, which means that
+the data structures and programming-interface are quite different from
+the serial or threads versions of FFTW.  
+
+   Distributed-memory parallelism is especially useful when you are
+transforming arrays so large that they do not fit into the memory of a
+single processor.  The storage per-process required by FFTW's MPI
+routines is proportional to the total array size divided by the number
+of processes.  Conversely, distributed-memory parallelism can easily
+pose an unacceptably high communications overhead for small problems;
+the threshold problem size for which parallelism becomes advantageous
+will depend on the precise problem you are interested in, your
+hardware, and your MPI implementation.
+
+   A note on terminology: in MPI, you divide the data among a set of
+"processes" which each run in their own memory address space.
+Generally, each process runs on a different physical processor, but
+this is not required.  A set of processes in MPI is described by an
+opaque data structure called a "communicator," the most common of which
+is the predefined communicator `MPI_COMM_WORLD' which refers to _all_
+processes.  For more information on these and other concepts common to
+all MPI programs, we refer the reader to the documentation at the MPI
+home page (http://www.mcs.anl.gov/research/projects/mpi/).  
+
+   We assume in this chapter that the reader is familiar with the usage
+of the serial (uniprocessor) FFTW, and focus only on the concepts new
+to the MPI interface.
+
+* Menu:
+
+* FFTW MPI Installation::
+* Linking and Initializing MPI FFTW::
+* 2d MPI example::
+* MPI Data Distribution::
+* Multi-dimensional MPI DFTs of Real Data::
+* Other Multi-dimensional Real-data MPI Transforms::
+* FFTW MPI Transposes::
+* FFTW MPI Wisdom::
+* Avoiding MPI Deadlocks::
+* FFTW MPI Performance Tips::
+* Combining MPI and Threads::
+* FFTW MPI Reference::
+* FFTW MPI Fortran Interface::
+
+\1f
+File: fftw3.info,  Node: FFTW MPI Installation,  Next: Linking and Initializing MPI FFTW,  Prev: Distributed-memory FFTW with MPI,  Up: Distributed-memory FFTW with MPI
+
+6.1 FFTW MPI Installation
+=========================
+
+All of the FFTW MPI code is located in the `mpi' subdirectory of the
+FFTW package.  On Unix systems, the FFTW MPI libraries and header files
+are automatically configured, compiled, and installed along with the
+uniprocessor FFTW libraries simply by including `--enable-mpi' in the
+flags to the `configure' script (*note Installation on Unix::).  
+
+   Any implementation of the MPI standard, version 1 or later, should
+work with FFTW.  The `configure' script will attempt to automatically
+detect how to compile and link code using your MPI implementation.  In
+some cases, especially if you have multiple different MPI
+implementations installed or have an unusual MPI software package, you
+may need to provide this information explicitly.
+
+   Most commonly, one compiles MPI code by invoking a special compiler
+command, typically `mpicc' for C code.  The `configure' script knows
+the most common names for this command, but you can specify the MPI
+compilation command explicitly by setting the `MPICC' variable, as in
+`./configure MPICC=mpicc ...'.  
+
+   If, instead of a special compiler command, you need to link a certain
+library, you can specify the link command via the `MPILIBS' variable,
+as in `./configure MPILIBS=-lmpi ...'.  Note that if your MPI library
+is installed in a non-standard location (one the compiler does not know
+about by default), you may also have to specify the location of the
+library and header files via `LDFLAGS' and `CPPFLAGS' variables,
+respectively, as in `./configure LDFLAGS=-L/path/to/mpi/libs
+CPPFLAGS=-I/path/to/mpi/include ...'.
+
+\1f
+File: fftw3.info,  Node: Linking and Initializing MPI FFTW,  Next: 2d MPI example,  Prev: FFTW MPI Installation,  Up: Distributed-memory FFTW with MPI
+
+6.2 Linking and Initializing MPI FFTW
+=====================================
+
+Programs using the MPI FFTW routines should be linked with `-lfftw3_mpi
+-lfftw3 -lm' on Unix in double precision, `-lfftw3f_mpi -lfftw3f -lm'
+in single precision, and so on (*note Precision::). You will also need
+to link with whatever library is responsible for MPI on your system; in
+most MPI implementations, there is a special compiler alias named
+`mpicc' to compile and link MPI code.  
+
+   Before calling any FFTW routines except possibly `fftw_init_threads'
+(*note Combining MPI and Threads::), but after calling `MPI_Init', you
+should call the function:
+
+     void fftw_mpi_init(void);
+   
+   If, at the end of your program, you want to get rid of all memory and
+other resources allocated internally by FFTW, for both the serial and
+MPI routines, you can call:
+
+     void fftw_mpi_cleanup(void);
+   
+   which is much like the `fftw_cleanup()' function except that it also
+gets rid of FFTW's MPI-related data.  You must _not_ execute any
+previously created plans after calling this function.
+
+\1f
+File: fftw3.info,  Node: 2d MPI example,  Next: MPI Data Distribution,  Prev: Linking and Initializing MPI FFTW,  Up: Distributed-memory FFTW with MPI
+
+6.3 2d MPI example
+==================
+
+Before we document the FFTW MPI interface in detail, we begin with a
+simple example outlining how one would perform a two-dimensional `N0'
+by `N1' complex DFT.
+
+     #include <fftw3-mpi.h>
+
+     int main(int argc, char **argv)
+     {
+         const ptrdiff_t N0 = ..., N1 = ...;
+         fftw_plan plan;
+         fftw_complex *data;
+         ptrdiff_t alloc_local, local_n0, local_0_start, i, j;
+
+         MPI_Init(&argc, &argv);
+         fftw_mpi_init();
+
+         /* get local data size and allocate */
+         alloc_local = fftw_mpi_local_size_2d(N0, N1, MPI_COMM_WORLD,
+                                              &local_n0, &local_0_start);
+         data = fftw_alloc_complex(alloc_local);
+
+         /* create plan for in-place forward DFT */
+         plan = fftw_mpi_plan_dft_2d(N0, N1, data, data, MPI_COMM_WORLD,
+                                     FFTW_FORWARD, FFTW_ESTIMATE);
+
+         /* initialize data to some function my_function(x,y) */
+         for (i = 0; i < local_n0; ++i) for (j = 0; j < N1; ++j)
+            data[i*N1 + j] = my_function(local_0_start + i, j);
+
+         /* compute transforms, in-place, as many times as desired */
+         fftw_execute(plan);
+
+         fftw_destroy_plan(plan);
+
+         MPI_Finalize();
+     }
+
+   As can be seen above, the MPI interface follows the same basic style
+of allocate/plan/execute/destroy as the serial FFTW routines.  All of
+the MPI-specific routines are prefixed with `fftw_mpi_' instead of
+`fftw_'.  There are a few important differences, however:
+
+   First, we must call `fftw_mpi_init()' after calling `MPI_Init'
+(required in all MPI programs) and before calling any other `fftw_mpi_'
+routine.  
+
+   Second, when we create the plan with `fftw_mpi_plan_dft_2d',
+analogous to `fftw_plan_dft_2d', we pass an additional argument: the
+communicator, indicating which processes will participate in the
+transform (here `MPI_COMM_WORLD', indicating all processes).  Whenever
+you create, execute, or destroy a plan for an MPI transform, you must
+call the corresponding FFTW routine on _all_ processes in the
+communicator for that transform.  (That is, these are _collective_
+calls.)  Note that the plan for the MPI transform uses the standard
+`fftw_execute' and `fftw_destroy' routines (on the other hand, there
+are MPI-specific new-array execute functions documented below).  
+
+   Third, all of the FFTW MPI routines take `ptrdiff_t' arguments
+instead of `int' as for the serial FFTW.  `ptrdiff_t' is a standard C
+integer type which is (at least) 32 bits wide on a 32-bit machine and
+64 bits wide on a 64-bit machine.  This is to make it easy to specify
+very large parallel transforms on a 64-bit machine.  (You can specify
+64-bit transform sizes in the serial FFTW, too, but only by using the
+`guru64' planner interface.  *Note 64-bit Guru Interface::.)  
+
+   Fourth, and most importantly, you don't allocate the entire
+two-dimensional array on each process.  Instead, you call
+`fftw_mpi_local_size_2d' to find out what _portion_ of the array
+resides on each processor, and how much space to allocate.  Here, the
+portion of the array on each process is a `local_n0' by `N1' slice of
+the total array, starting at index `local_0_start'.  The total number
+of `fftw_complex' numbers to allocate is given by the `alloc_local'
+return value, which _may_ be greater than `local_n0 * N1' (in case some
+intermediate calculations require additional storage).  The data
+distribution in FFTW's MPI interface is described in more detail by the
+next section.  
+
+   Given the portion of the array that resides on the local process, it
+is straightforward to initialize the data (here to a function
+`myfunction') and otherwise manipulate it.  Of course, at the end of
+the program you may want to output the data somehow, but synchronizing
+this output is up to you and is beyond the scope of this manual.  (One
+good way to output a large multi-dimensional distributed array in MPI
+to a portable binary file is to use the free HDF5 library; see the HDF
+home page (http://www.hdfgroup.org/).)  
+
+\1f
+File: fftw3.info,  Node: MPI Data Distribution,  Next: Multi-dimensional MPI DFTs of Real Data,  Prev: 2d MPI example,  Up: Distributed-memory FFTW with MPI
+
+6.4 MPI Data Distribution
+=========================
+
+The most important concept to understand in using FFTW's MPI interface
+is the data distribution.  With a serial or multithreaded FFT, all of
+the inputs and outputs are stored as a single contiguous chunk of
+memory.  With a distributed-memory FFT, the inputs and outputs are
+broken into disjoint blocks, one per process.
+
+   In particular, FFTW uses a _1d block distribution_ of the data,
+distributed along the _first dimension_.  For example, if you want to
+perform a 100 x 200  complex DFT, distributed over 4 processes, each
+process will get a 25 x 200  slice of the data.  That is, process 0
+will get rows 0 through 24, process 1 will get rows 25 through 49,
+process 2 will get rows 50 through 74, and process 3 will get rows 75
+through 99.  If you take the same array but distribute it over 3
+processes, then it is not evenly divisible so the different processes
+will have unequal chunks.  FFTW's default choice in this case is to
+assign 34 rows to processes 0 and 1, and 32 rows to process 2.  
+
+   FFTW provides several `fftw_mpi_local_size' routines that you can
+call to find out what portion of an array is stored on the current
+process.  In most cases, you should use the default block sizes picked
+by FFTW, but it is also possible to specify your own block size.  For
+example, with a 100 x 200  array on three processes, you can tell FFTW
+to use a block size of 40, which would assign 40 rows to processes 0
+and 1, and 20 rows to process 2.  FFTW's default is to divide the data
+equally among the processes if possible, and as best it can otherwise.
+The rows are always assigned in "rank order," i.e. process 0 gets the
+first block of rows, then process 1, and so on.  (You can change this
+by using `MPI_Comm_split' to create a new communicator with re-ordered
+processes.)  However, you should always call the `fftw_mpi_local_size'
+routines, if possible, rather than trying to predict FFTW's
+distribution choices.
+
+   In particular, it is critical that you allocate the storage size that
+is returned by `fftw_mpi_local_size', which is _not_ necessarily the
+size of the local slice of the array.  The reason is that intermediate
+steps of FFTW's algorithms involve transposing the array and
+redistributing the data, so at these intermediate steps FFTW may
+require more local storage space (albeit always proportional to the
+total size divided by the number of processes).  The
+`fftw_mpi_local_size' functions know how much storage is required for
+these intermediate steps and tell you the correct amount to allocate.
+
+* Menu:
+
+* Basic and advanced distribution interfaces::
+* Load balancing::
+* Transposed distributions::
+* One-dimensional distributions::
+
+\1f
+File: fftw3.info,  Node: Basic and advanced distribution interfaces,  Next: Load balancing,  Prev: MPI Data Distribution,  Up: MPI Data Distribution
+
+6.4.1 Basic and advanced distribution interfaces
+------------------------------------------------
+
+As with the planner interface, the `fftw_mpi_local_size' distribution
+interface is broken into basic and advanced (`_many') interfaces, where
+the latter allows you to specify the block size manually and also to
+request block sizes when computing multiple transforms simultaneously.
+These functions are documented more exhaustively by the FFTW MPI
+Reference, but we summarize the basic ideas here using a couple of
+two-dimensional examples.
+
+   For the 100 x 200  complex-DFT example, above, we would find the
+distribution by calling the following function in the basic interface:
+
+     ptrdiff_t fftw_mpi_local_size_2d(ptrdiff_t n0, ptrdiff_t n1, MPI_Comm comm,
+                                      ptrdiff_t *local_n0, ptrdiff_t *local_0_start);
+   
+   Given the total size of the data to be transformed (here, `n0 = 100'
+and `n1 = 200') and an MPI communicator (`comm'), this function
+provides three numbers.
+
+   First, it describes the shape of the local data: the current process
+should store a `local_n0' by `n1' slice of the overall dataset, in
+row-major order (`n1' dimension contiguous), starting at index
+`local_0_start'.  That is, if the total dataset is viewed as a `n0' by
+`n1' matrix, the current process should store the rows `local_0_start'
+to `local_0_start+local_n0-1'.  Obviously, if you are running with only
+a single MPI process, that process will store the entire array:
+`local_0_start' will be zero and `local_n0' will be `n0'.  *Note
+Row-major Format::.  
+
+   Second, the return value is the total number of data elements (e.g.,
+complex numbers for a complex DFT) that should be allocated for the
+input and output arrays on the current process (ideally with
+`fftw_malloc' or an `fftw_alloc' function, to ensure optimal
+alignment).  It might seem that this should always be equal to
+`local_n0 * n1', but this is _not_ the case.  FFTW's distributed FFT
+algorithms require data redistributions at intermediate stages of the
+transform, and in some circumstances this may require slightly larger
+local storage.  This is discussed in more detail below, under *note
+Load balancing::.  
+
+   The advanced-interface `local_size' function for multidimensional
+transforms returns the same three things (`local_n0', `local_0_start',
+and the total number of elements to allocate), but takes more inputs:
+
+     ptrdiff_t fftw_mpi_local_size_many(int rnk, const ptrdiff_t *n,
+                                        ptrdiff_t howmany,
+                                        ptrdiff_t block0,
+                                        MPI_Comm comm,
+                                        ptrdiff_t *local_n0,
+                                        ptrdiff_t *local_0_start);
+   
+   The two-dimensional case above corresponds to `rnk = 2' and an array
+`n' of length 2 with `n[0] = n0' and `n[1] = n1'.  This routine is for
+any `rnk > 1'; one-dimensional transforms have their own interface
+because they work slightly differently, as discussed below.
+
+   First, the advanced interface allows you to perform multiple
+transforms at once, of interleaved data, as specified by the `howmany'
+parameter.  (`hoamany' is 1 for a single transform.)
+
+   Second, here you can specify your desired block size in the `n0'
+dimension, `block0'.  To use FFTW's default block size, pass
+`FFTW_MPI_DEFAULT_BLOCK' (0) for `block0'.  Otherwise, on `P'
+processes, FFTW will return `local_n0' equal to `block0' on the first
+`P / block0' processes (rounded down), return `local_n0' equal to `n0 -
+block0 * (P / block0)' on the next process, and `local_n0' equal to
+zero on any remaining processes.  In general, we recommend using the
+default block size (which corresponds to `n0 / P', rounded up).  
+
+   For example, suppose you have `P = 4' processes and `n0 = 21'.  The
+default will be a block size of `6', which will give `local_n0 = 6' on
+the first three processes and `local_n0 = 3' on the last process.
+Instead, however, you could specify `block0 = 5' if you wanted, which
+would give `local_n0 = 5' on processes 0 to 2, `local_n0 = 6' on
+process 3.  (This choice, while it may look superficially more
+"balanced," has the same critical path as FFTW's default but requires
+more communications.)
+
+\1f
+File: fftw3.info,  Node: Load balancing,  Next: Transposed distributions,  Prev: Basic and advanced distribution interfaces,  Up: MPI Data Distribution
+
+6.4.2 Load balancing
+--------------------
+
+Ideally, when you parallelize a transform over some P processes, each
+process should end up with work that takes equal time.  Otherwise, all
+of the processes end up waiting on whichever process is slowest.  This
+goal is known as "load balancing."  In this section, we describe the
+circumstances under which FFTW is able to load-balance well, and in
+particular how you should choose your transform size in order to load
+balance.
+
+   Load balancing is especially difficult when you are parallelizing
+over heterogeneous machines; for example, if one of your processors is a
+old 486 and another is a Pentium IV, obviously you should give the
+Pentium more work to do than the 486 since the latter is much slower.
+FFTW does not deal with this problem, however--it assumes that your
+processes run on hardware of comparable speed, and that the goal is
+therefore to divide the problem as equally as possible.
+
+   For a multi-dimensional complex DFT, FFTW can divide the problem
+equally among the processes if: (i) the _first_ dimension `n0' is
+divisible by P; and (ii), the _product_ of the subsequent dimensions is
+divisible by P.  (For the advanced interface, where you can specify
+multiple simultaneous transforms via some "vector" length `howmany', a
+factor of `howmany' is included in the product of the subsequent
+dimensions.)
+
+   For a one-dimensional complex DFT, the length `N' of the data should
+be divisible by P _squared_ to be able to divide the problem equally
+among the processes.
+
+\1f
+File: fftw3.info,  Node: Transposed distributions,  Next: One-dimensional distributions,  Prev: Load balancing,  Up: MPI Data Distribution
+
+6.4.3 Transposed distributions
+------------------------------
+
+Internally, FFTW's MPI transform algorithms work by first computing
+transforms of the data local to each process, then by globally
+_transposing_ the data in some fashion to redistribute the data among
+the processes, transforming the new data local to each process, and
+transposing back.  For example, a two-dimensional `n0' by `n1' array,
+distributed across the `n0' dimension, is transformd by: (i)
+transforming the `n1' dimension, which are local to each process; (ii)
+transposing to an `n1' by `n0' array, distributed across the `n1'
+dimension; (iii) transforming the `n0' dimension, which is now local to
+each process; (iv) transposing back.  
+
+   However, in many applications it is acceptable to compute a
+multidimensional DFT whose results are produced in transposed order
+(e.g., `n1' by `n0' in two dimensions).  This provides a significant
+performance advantage, because it means that the final transposition
+step can be omitted.  FFTW supports this optimization, which you
+specify by passing the flag `FFTW_MPI_TRANSPOSED_OUT' to the planner
+routines.  To compute the inverse transform of transposed output, you
+specify `FFTW_MPI_TRANSPOSED_IN' to tell it that the input is
+transposed.  In this section, we explain how to interpret the output
+format of such a transform.  
+
+   Suppose you have are transforming multi-dimensional data with (at
+least two) dimensions n[0] x n[1] x n[2] x ... x n[d-1] .  As always,
+it is distributed along the first dimension n[0] .  Now, if we compute
+its DFT with the `FFTW_MPI_TRANSPOSED_OUT' flag, the resulting output
+data are stored with the first _two_ dimensions transposed: n[1] x n[0]
+x n[2] x ... x n[d-1] , distributed along the n[1]  dimension.
+Conversely, if we take the n[1] x n[0] x n[2] x ... x n[d-1]  data and
+transform it with the `FFTW_MPI_TRANSPOSED_IN' flag, then the format
+goes back to the original n[0] x n[1] x n[2] x ... x n[d-1]  array.
+
+   There are two ways to find the portion of the transposed array that
+resides on the current process.  First, you can simply call the
+appropriate `local_size' function, passing n[1] x n[0] x n[2] x ... x
+n[d-1]  (the transposed dimensions).  This would mean calling the
+`local_size' function twice, once for the transposed and once for the
+non-transposed dimensions.  Alternatively, you can call one of the
+`local_size_transposed' functions, which returns both the
+non-transposed and transposed data distribution from a single call.
+For example, for a 3d transform with transposed output (or input), you
+might call:
+
+     ptrdiff_t fftw_mpi_local_size_3d_transposed(
+                     ptrdiff_t n0, ptrdiff_t n1, ptrdiff_t n2, MPI_Comm comm,
+                     ptrdiff_t *local_n0, ptrdiff_t *local_0_start,
+                     ptrdiff_t *local_n1, ptrdiff_t *local_1_start);
+   
+   Here, `local_n0' and `local_0_start' give the size and starting
+index of the `n0' dimension for the _non_-transposed data, as in the
+previous sections.  For _transposed_ data (e.g. the output for
+`FFTW_MPI_TRANSPOSED_OUT'), `local_n1' and `local_1_start' give the
+size and starting index of the `n1' dimension, which is the first
+dimension of the transposed data (`n1' by `n0' by `n2').
+
+   (Note that `FFTW_MPI_TRANSPOSED_IN' is completely equivalent to
+performing `FFTW_MPI_TRANSPOSED_OUT' and passing the first two
+dimensions to the planner in reverse order, or vice versa.  If you pass
+_both_ the `FFTW_MPI_TRANSPOSED_IN' and `FFTW_MPI_TRANSPOSED_OUT'
+flags, it is equivalent to swapping the first two dimensions passed to
+the planner and passing _neither_ flag.)
+
+\1f
+File: fftw3.info,  Node: One-dimensional distributions,  Prev: Transposed distributions,  Up: MPI Data Distribution
+
+6.4.4 One-dimensional distributions
+-----------------------------------
+
+For one-dimensional distributed DFTs using FFTW, matters are slightly
+more complicated because the data distribution is more closely tied to
+how the algorithm works.  In particular, you can no longer pass an
+arbitrary block size and must accept FFTW's default; also, the block
+sizes may be different for input and output.  Also, the data
+distribution depends on the flags and transform direction, in order for
+forward and backward transforms to work correctly.
+
+     ptrdiff_t fftw_mpi_local_size_1d(ptrdiff_t n0, MPI_Comm comm,
+                     int sign, unsigned flags,
+                     ptrdiff_t *local_ni, ptrdiff_t *local_i_start,
+                     ptrdiff_t *local_no, ptrdiff_t *local_o_start);
+   
+   This function computes the data distribution for a 1d transform of
+size `n0' with the given transform `sign' and `flags'.  Both input and
+output data use block distributions.  The input on the current process
+will consist of `local_ni' numbers starting at index `local_i_start';
+e.g. if only a single process is used, then `local_ni' will be `n0' and
+`local_i_start' will be `0'.  Similarly for the output, with `local_no'
+numbers starting at index `local_o_start'.  The return value of
+`fftw_mpi_local_size_1d' will be the total number of elements to
+allocate on the current process (which might be slightly larger than
+the local size due to intermediate steps in the algorithm).
+
+   As mentioned above (*note Load balancing::), the data will be divided
+equally among the processes if `n0' is divisible by the _square_ of the
+number of processes.  In this case, `local_ni' will equal `local_no'.
+Otherwise, they may be different.
+
+   For some applications, such as convolutions, the order of the output
+data is irrelevant.  In this case, performance can be improved by
+specifying that the output data be stored in an FFTW-defined
+"scrambled" format.  (In particular, this is the analogue of transposed
+output in the multidimensional case: scrambled output saves a
+communications step.)  If you pass `FFTW_MPI_SCRAMBLED_OUT' in the
+flags, then the output is stored in this (undocumented) scrambled
+order.  Conversely, to perform the inverse transform of data in
+scrambled order, pass the `FFTW_MPI_SCRAMBLED_IN' flag.  
+
+   In MPI FFTW, only composite sizes `n0' can be parallelized; we have
+not yet implemented a parallel algorithm for large prime sizes.
+
+\1f
+File: fftw3.info,  Node: Multi-dimensional MPI DFTs of Real Data,  Next: Other Multi-dimensional Real-data MPI Transforms,  Prev: MPI Data Distribution,  Up: Distributed-memory FFTW with MPI
+
+6.5 Multi-dimensional MPI DFTs of Real Data
+===========================================
+
+FFTW's MPI interface also supports multi-dimensional DFTs of real data,
+similar to the serial r2c and c2r interfaces.  (Parallel
+one-dimensional real-data DFTs are not currently supported; you must
+use a complex transform and set the imaginary parts of the inputs to
+zero.)
+
+   The key points to understand for r2c and c2r MPI transforms (compared
+to the MPI complex DFTs or the serial r2c/c2r transforms), are:
+
+   * Just as for serial transforms, r2c/c2r DFTs transform n[0] x n[1]
+     x n[2] x ... x n[d-1]  real data to/from n[0] x n[1] x n[2] x ...
+     x (n[d-1]/2 + 1)  complex data: the last dimension of the complex
+     data is cut in half (rounded down), plus one.  As for the serial
+     transforms, the sizes you pass to the `plan_dft_r2c' and
+     `plan_dft_c2r' are the n[0] x n[1] x n[2] x ... x n[d-1]
+     dimensions of the real data.
+
+   * Although the real data is _conceptually_ n[0] x n[1] x n[2] x ...
+     x n[d-1] , it is _physically_ stored as an n[0] x n[1] x n[2] x
+     ... x [2 (n[d-1]/2 + 1)]  array, where the last dimension has been
+     _padded_ to make it the same size as the complex output.  This is
+     much like the in-place serial r2c/c2r interface (*note
+     Multi-Dimensional DFTs of Real Data::), except that in MPI the
+     padding is required even for out-of-place data.  The extra padding
+     numbers are ignored by FFTW (they are _not_ like zero-padding the
+     transform to a larger size); they are only used to determine the
+     data layout.
+
+   * The data distribution in MPI for _both_ the real and complex data
+     is determined by the shape of the _complex_ data.  That is, you
+     call the appropriate `local size' function for the n[0] x n[1] x
+     n[2] x ... x (n[d-1]/2 + 1)
+
+     complex data, and then use the _same_ distribution for the real
+     data except that the last complex dimension is replaced by a
+     (padded) real dimension of twice the length.
+
+
+   For example suppose we are performing an out-of-place r2c transform
+of L x M x N  real data [padded to L x M x 2(N/2+1) ], resulting in L x
+M x N/2+1  complex data.  Similar to the example in *note 2d MPI
+example::, we might do something like:
+
+     #include <fftw3-mpi.h>
+
+     int main(int argc, char **argv)
+     {
+         const ptrdiff_t L = ..., M = ..., N = ...;
+         fftw_plan plan;
+         double *rin;
+         fftw_complex *cout;
+         ptrdiff_t alloc_local, local_n0, local_0_start, i, j, k;
+
+         MPI_Init(&argc, &argv);
+         fftw_mpi_init();
+
+         /* get local data size and allocate */
+         alloc_local = fftw_mpi_local_size_3d(L, M, N/2+1, MPI_COMM_WORLD,
+                                              &local_n0, &local_0_start);
+         rin = fftw_alloc_real(2 * alloc_local);
+         cout = fftw_alloc_complex(alloc_local);
+
+         /* create plan for out-of-place r2c DFT */
+         plan = fftw_mpi_plan_dft_r2c_3d(L, M, N, rin, cout, MPI_COMM_WORLD,
+                                         FFTW_MEASURE);
+
+         /* initialize rin to some function my_func(x,y,z) */
+         for (i = 0; i < local_n0; ++i)
+            for (j = 0; j < M; ++j)
+              for (k = 0; k < N; ++k)
+            rin[(i*M + j) * (2*(N/2+1)) + k] = my_func(local_0_start+i, j, k);
+
+         /* compute transforms as many times as desired */
+         fftw_execute(plan);
+
+         fftw_destroy_plan(plan);
+
+         MPI_Finalize();
+     }
+
+   Note that we allocated `rin' using `fftw_alloc_real' with an
+argument of `2 * alloc_local': since `alloc_local' is the number of
+_complex_ values to allocate, the number of _real_ values is twice as
+many.  The `rin' array is then local_n0 x M x 2(N/2+1)  in row-major
+order, so its `(i,j,k)' element is at the index `(i*M + j) *
+(2*(N/2+1)) + k' (*note Multi-dimensional Array Format::).
+
+   As for the complex transforms, improved performance can be obtained
+by specifying that the output is the transpose of the input or vice
+versa (*note Transposed distributions::).  In our L x M x N  r2c
+example, including `FFTW_TRANSPOSED_OUT' in the flags means that the
+input would be a padded L x M x 2(N/2+1)  real array distributed over
+the `L' dimension, while the output would be a M x L x N/2+1  complex
+array distributed over the `M' dimension.  To perform the inverse c2r
+transform with the same data distributions, you would use the
+`FFTW_TRANSPOSED_IN' flag.
+
+\1f
+File: fftw3.info,  Node: Other Multi-dimensional Real-data MPI Transforms,  Next: FFTW MPI Transposes,  Prev: Multi-dimensional MPI DFTs of Real Data,  Up: Distributed-memory FFTW with MPI
+
+6.6 Other multi-dimensional Real-Data MPI Transforms
+====================================================
+
+FFTW's MPI interface also supports multi-dimensional `r2r' transforms
+of all kinds supported by the serial interface (e.g. discrete cosine
+and sine transforms, discrete Hartley transforms, etc.).  Only
+multi-dimensional `r2r' transforms, not one-dimensional transforms, are
+currently parallelized.
+
+   These are used much like the multidimensional complex DFTs discussed
+above, except that the data is real rather than complex, and one needs
+to pass an r2r transform kind (`fftw_r2r_kind') for each dimension as
+in the serial FFTW (*note More DFTs of Real Data::).
+
+   For example, one might perform a two-dimensional L x M  that is an
+REDFT10 (DCT-II) in the first dimension and an RODFT10 (DST-II) in the
+second dimension with code like:
+
+         const ptrdiff_t L = ..., M = ...;
+         fftw_plan plan;
+         double *data;
+         ptrdiff_t alloc_local, local_n0, local_0_start, i, j;
+
+         /* get local data size and allocate */
+         alloc_local = fftw_mpi_local_size_2d(L, M, MPI_COMM_WORLD,
+                                              &local_n0, &local_0_start);
+         data = fftw_alloc_real(alloc_local);
+
+         /* create plan for in-place REDFT10 x RODFT10 */
+         plan = fftw_mpi_plan_r2r_2d(L, M, data, data, MPI_COMM_WORLD,
+                                     FFTW_REDFT10, FFTW_RODFT10, FFTW_MEASURE);
+
+         /* initialize data to some function my_function(x,y) */
+         for (i = 0; i < local_n0; ++i) for (j = 0; j < M; ++j)
+            data[i*M + j] = my_function(local_0_start + i, j);
+
+         /* compute transforms, in-place, as many times as desired */
+         fftw_execute(plan);
+
+         fftw_destroy_plan(plan);
+
+   Notice that we use the same `local_size' functions as we did for
+complex data, only now we interpret the sizes in terms of real rather
+than complex values, and correspondingly use `fftw_alloc_real'.
+
+\1f
+File: fftw3.info,  Node: FFTW MPI Transposes,  Next: FFTW MPI Wisdom,  Prev: Other Multi-dimensional Real-data MPI Transforms,  Up: Distributed-memory FFTW with MPI
+
+6.7 FFTW MPI Transposes
+=======================
+
+The FFTW's MPI Fourier transforms rely on one or more _global
+transposition_ step for their communications.  For example, the
+multidimensional transforms work by transforming along some dimensions,
+then transposing to make the first dimension local and transforming
+that, then transposing back.  Because global transposition of a
+block-distributed matrix has many other potential uses besides FFTs,
+FFTW's transpose routines can be called directly, as documented in this
+section.
+
+* Menu:
+
+* Basic distributed-transpose interface::
+* Advanced distributed-transpose interface::
+* An improved replacement for MPI_Alltoall::
+
+\1f
+File: fftw3.info,  Node: Basic distributed-transpose interface,  Next: Advanced distributed-transpose interface,  Prev: FFTW MPI Transposes,  Up: FFTW MPI Transposes
+
+6.7.1 Basic distributed-transpose interface
+-------------------------------------------
+
+In particular, suppose that we have an `n0' by `n1' array in row-major
+order, block-distributed across the `n0' dimension.  To transpose this
+into an `n1' by `n0' array block-distributed across the `n1' dimension,
+we would create a plan by calling the following function:
+
+     fftw_plan fftw_mpi_plan_transpose(ptrdiff_t n0, ptrdiff_t n1,
+                                       double *in, double *out,
+                                       MPI_Comm comm, unsigned flags);
+   
+   The input and output arrays (`in' and `out') can be the same.  The
+transpose is actually executed by calling `fftw_execute' on the plan,
+as usual.  
+
+   The `flags' are the usual FFTW planner flags, but support two
+additional flags: `FFTW_MPI_TRANSPOSED_OUT' and/or
+`FFTW_MPI_TRANSPOSED_IN'.  What these flags indicate, for transpose
+plans, is that the output and/or input, respectively, are _locally_
+transposed.  That is, on each process input data is normally stored as
+a `local_n0' by `n1' array in row-major order, but for an
+`FFTW_MPI_TRANSPOSED_IN' plan the input data is stored as `n1' by
+`local_n0' in row-major order.  Similarly, `FFTW_MPI_TRANSPOSED_OUT'
+means that the output is `n0' by `local_n1' instead of `local_n1' by
+`n0'.  
+
+   To determine the local size of the array on each process before and
+after the transpose, as well as the amount of storage that must be
+allocated, one should call `fftw_mpi_local_size_2d_transposed', just as
+for a 2d DFT as described in the previous section: 
+
+     ptrdiff_t fftw_mpi_local_size_2d_transposed
+                     (ptrdiff_t n0, ptrdiff_t n1, MPI_Comm comm,
+                      ptrdiff_t *local_n0, ptrdiff_t *local_0_start,
+                      ptrdiff_t *local_n1, ptrdiff_t *local_1_start);
+   
+   Again, the return value is the local storage to allocate, which in
+this case is the number of _real_ (`double') values rather than complex
+numbers as in the previous examples.
+
+\1f
+File: fftw3.info,  Node: Advanced distributed-transpose interface,  Next: An improved replacement for MPI_Alltoall,  Prev: Basic distributed-transpose interface,  Up: FFTW MPI Transposes
+
+6.7.2 Advanced distributed-transpose interface
+----------------------------------------------
+
+The above routines are for a transpose of a matrix of numbers (of type
+`double'), using FFTW's default block sizes.  More generally, one can
+perform transposes of _tuples_ of numbers, with user-specified block
+sizes for the input and output:
+
+     fftw_plan fftw_mpi_plan_many_transpose
+                     (ptrdiff_t n0, ptrdiff_t n1, ptrdiff_t howmany,
+                      ptrdiff_t block0, ptrdiff_t block1,
+                      double *in, double *out, MPI_Comm comm, unsigned flags);
+   
+   In this case, one is transposing an `n0' by `n1' matrix of
+`howmany'-tuples (e.g. `howmany = 2' for complex numbers).  The input
+is distributed along the `n0' dimension with block size `block0', and
+the `n1' by `n0' output is distributed along the `n1' dimension with
+block size `block1'.  If `FFTW_MPI_DEFAULT_BLOCK' (0) is passed for a
+block size then FFTW uses its default block size.  To get the local
+size of the data on each process, you should then call
+`fftw_mpi_local_size_many_transposed'.  
+
+\1f
+File: fftw3.info,  Node: An improved replacement for MPI_Alltoall,  Prev: Advanced distributed-transpose interface,  Up: FFTW MPI Transposes
+
+6.7.3 An improved replacement for MPI_Alltoall
+----------------------------------------------
+
+We close this section by noting that FFTW's MPI transpose routines can
+be thought of as a generalization for the `MPI_Alltoall' function
+(albeit only for floating-point types), and in some circumstances can
+function as an improved replacement.  
+
+   `MPI_Alltoall' is defined by the MPI standard as:
+
+     int MPI_Alltoall(void *sendbuf, int sendcount, MPI_Datatype sendtype,
+                      void *recvbuf, int recvcnt, MPI_Datatype recvtype,
+                      MPI_Comm comm);
+
+   In particular, for `double*' arrays `in' and `out', consider the
+call:
+
+     MPI_Alltoall(in, howmany, MPI_DOUBLE, out, howmany MPI_DOUBLE, comm);
+
+   This is completely equivalent to:
+
+     MPI_Comm_size(comm, &P);
+     plan = fftw_mpi_plan_many_transpose(P, P, howmany, 1, 1, in, out, comm, FFTW_ESTIMATE);
+     fftw_execute(plan);
+     fftw_destroy_plan(plan);
+
+   That is, computing a P x P  transpose on `P' processes, with a block
+size of 1, is just a standard all-to-all communication.
+
+   However, using the FFTW routine instead of `MPI_Alltoall' may have
+certain advantages.  First of all, FFTW's routine can operate in-place
+(`in == out') whereas `MPI_Alltoall' can only operate out-of-place.  
+
+   Second, even for out-of-place plans, FFTW's routine may be faster,
+especially if you need to perform the all-to-all communication many
+times and can afford to use `FFTW_MEASURE' or `FFTW_PATIENT'.  It
+should certainly be no slower, not including the time to create the
+plan, since one of the possible algorithms that FFTW uses for an
+out-of-place transpose _is_ simply to call `MPI_Alltoall'.  However,
+FFTW also considers several other possible algorithms that, depending
+on your MPI implementation and your hardware, may be faster.  
+
+\1f
+File: fftw3.info,  Node: FFTW MPI Wisdom,  Next: Avoiding MPI Deadlocks,  Prev: FFTW MPI Transposes,  Up: Distributed-memory FFTW with MPI
+
+6.8 FFTW MPI Wisdom
+===================
+
+FFTW's "wisdom" facility (*note Words of Wisdom-Saving Plans::) can be
+used to save MPI plans as well as to save uniprocessor plans.  However,
+for MPI there are several unavoidable complications.
+
+   First, the MPI standard does not guarantee that every process can
+perform file I/O (at least, not using C stdio routines)--in general, we
+may only assume that process 0 is capable of I/O.(1) So, if we want to
+export the wisdom from a single process to a file, we must first export
+the wisdom to a string, then send it to process 0, then write it to a
+file.
+
+   Second, in principle we may want to have separate wisdom for every
+process, since in general the processes may run on different hardware
+even for a single MPI program.  However, in practice FFTW's MPI code is
+designed for the case of homogeneous hardware (*note Load balancing::),
+and in this case it is convenient to use the same wisdom for every
+process.  Thus, we need a mechanism to synchronize the wisdom.
+
+   To address both of these problems, FFTW provides the following two
+functions:
+
+     void fftw_mpi_broadcast_wisdom(MPI_Comm comm);
+     void fftw_mpi_gather_wisdom(MPI_Comm comm);
+   
+   Given a communicator `comm', `fftw_mpi_broadcast_wisdom' will
+broadcast the wisdom from process 0 to all other processes.
+Conversely, `fftw_mpi_gather_wisdom' will collect wisdom from all
+processes onto process 0.  (If the plans created for the same problem
+by different processes are not the same, `fftw_mpi_gather_wisdom' will
+arbitrarily choose one of the plans.)  Both of these functions may
+result in suboptimal plans for different processes if the processes are
+running on non-identical hardware.  Both of these functions are
+_collective_ calls, which means that they must be executed by all
+processes in the communicator.  
+
+   So, for example, a typical code snippet to import wisdom from a file
+and use it on all processes would be:
+
+     {
+         int rank;
+
+         fftw_mpi_init();
+         MPI_Comm_rank(MPI_COMM_WORLD, &rank);
+         if (rank == 0) fftw_import_wisdom_from_filename("mywisdom");
+         fftw_mpi_broadcast_wisdom(MPI_COMM_WORLD);
+     }
+
+   (Note that we must call `fftw_mpi_init' before importing any wisdom
+that might contain MPI plans.)  Similarly, a typical code snippet to
+export wisdom from all processes to a file is: 
+
+     {
+         int rank;
+
+         fftw_mpi_gather_wisdom(MPI_COMM_WORLD);
+         MPI_Comm_rank(MPI_COMM_WORLD, &rank);
+         if (rank == 0) fftw_export_wisdom_to_filename("mywisdom");
+     }
+
+   ---------- Footnotes ----------
+
+   (1) In fact, even this assumption is not technically guaranteed by
+the standard, although it seems to be universal in actual MPI
+implementations and is widely assumed by MPI-using software.
+Technically, you need to query the `MPI_IO' attribute of
+`MPI_COMM_WORLD' with `MPI_Attr_get'.  If this attribute is
+`MPI_PROC_NULL', no I/O is possible.  If it is `MPI_ANY_SOURCE', any
+process can perform I/O.  Otherwise, it is the rank of a process that
+can perform I/O ... but since it is not guaranteed to yield the _same_
+rank on all processes, you have to do an `MPI_Allreduce' of some kind
+if you want all processes to agree about which is going to do I/O.  And
+even then, the standard only guarantees that this process can perform
+output, but not input. See e.g. `Parallel Programming with MPI' by P.
+S. Pacheco, section 8.1.3.  Needless to say, in our experience
+virtually no MPI programmers worry about this.
+
+\1f
+File: fftw3.info,  Node: Avoiding MPI Deadlocks,  Next: FFTW MPI Performance Tips,  Prev: FFTW MPI Wisdom,  Up: Distributed-memory FFTW with MPI
+
+6.9 Avoiding MPI Deadlocks
+==========================
+
+An MPI program can _deadlock_ if one process is waiting for a message
+from another process that never gets sent.  To avoid deadlocks when
+using FFTW's MPI routines, it is important to know which functions are
+_collective_: that is, which functions must _always_ be called in the
+_same order_ from _every_ process in a given communicator.  (For
+example, `MPI_Barrier' is the canonical example of a collective
+function in the MPI standard.)  
+
+   The functions in FFTW that are _always_ collective are: every
+function beginning with `fftw_mpi_plan', as well as
+`fftw_mpi_broadcast_wisdom' and `fftw_mpi_gather_wisdom'.  Also, the
+following functions from the ordinary FFTW interface are collective
+when they are applied to a plan created by an `fftw_mpi_plan' function:
+`fftw_execute', `fftw_destroy_plan', and `fftw_flops'.  
+
+\1f
+File: fftw3.info,  Node: FFTW MPI Performance Tips,  Next: Combining MPI and Threads,  Prev: Avoiding MPI Deadlocks,  Up: Distributed-memory FFTW with MPI
+
+6.10 FFTW MPI Performance Tips
+==============================
+
+In this section, we collect a few tips on getting the best performance
+out of FFTW's MPI transforms.
+
+   First, because of the 1d block distribution, FFTW's parallelization
+is currently limited by the size of the first dimension.
+(Multidimensional block distributions may be supported by a future
+version.) More generally, you should ideally arrange the dimensions so
+that FFTW can divide them equally among the processes. *Note Load
+balancing::.  
+
+   Second, if it is not too inconvenient, you should consider working
+with transposed output for multidimensional plans, as this saves a
+considerable amount of communications.  *Note Transposed
+distributions::.  
+
+   Third, the fastest choices are generally either an in-place transform
+or an out-of-place transform with the `FFTW_DESTROY_INPUT' flag (which
+allows the input array to be used as scratch space).  In-place is
+especially beneficial if the amount of data per process is large.  
+
+   Fourth, if you have multiple arrays to transform at once, rather than
+calling FFTW's MPI transforms several times it usually seems to be
+faster to interleave the data and use the advanced interface.  (This
+groups the communications together instead of requiring separate
+messages for each transform.)
+
+\1f
+File: fftw3.info,  Node: Combining MPI and Threads,  Next: FFTW MPI Reference,  Prev: FFTW MPI Performance Tips,  Up: Distributed-memory FFTW with MPI
+
+6.11 Combining MPI and Threads
+==============================
+
+In certain cases, it may be advantageous to combine MPI
+(distributed-memory) and threads (shared-memory) parallelization.  FFTW
+supports this, with certain caveats.  For example, if you have a
+cluster of 4-processor shared-memory nodes, you may want to use threads
+within the nodes and MPI between the nodes, instead of MPI for all
+parallelization.
+
+   In particular, it is possible to seamlessly combine the MPI FFTW
+routines with the multi-threaded FFTW routines (*note Multi-threaded
+FFTW::). However, some care must be taken in the initialization code,
+which should look something like this:
+
+     int threads_ok;
+
+     int main(int argc, char **argv)
+     {
+         int provided;
+         MPI_Init_thread(&argc, &argv, MPI_THREAD_FUNNELED, &provided);
+         threads_ok = provided >= MPI_THREAD_FUNNELED;
+
+         if (threads_ok) threads_ok = fftw_init_threads();
+         fftw_mpi_init();
+
+         ...
+         if (threads_ok) fftw_plan_with_nthreads(...);
+         ...
+
+         MPI_Finalize();
+     }
+   
+   First, note that instead of calling `MPI_Init', you should call
+`MPI_Init_threads', which is the initialization routine defined by the
+MPI-2 standard to indicate to MPI that your program will be
+multithreaded.  We pass `MPI_THREAD_FUNNELED', which indicates that we
+will only call MPI routines from the main thread.  (FFTW will launch
+additional threads internally, but the extra threads will not call MPI
+code.)  (You may also pass `MPI_THREAD_SERIALIZED' or
+`MPI_THREAD_MULTIPLE', which requests additional multithreading support
+from the MPI implementation, but this is not required by FFTW.)  The
+`provided' parameter returns what level of threads support is actually
+supported by your MPI implementation; this _must_ be at least
+`MPI_THREAD_FUNNELED' if you want to call the FFTW threads routines, so
+we define a global variable `threads_ok' to record this.  You should
+only call `fftw_init_threads' or `fftw_plan_with_nthreads' if
+`threads_ok' is true.  For more information on thread safety in MPI,
+see the MPI and Threads
+(http://www.mpi-forum.org/docs/mpi-20-html/node162.htm) section of the
+MPI-2 standard.  
+
+   Second, we must call `fftw_init_threads' _before_ `fftw_mpi_init'.
+This is critical for technical reasons having to do with how FFTW
+initializes its list of algorithms.
+
+   Then, if you call `fftw_plan_with_nthreads(N)', _every_ MPI process
+will launch (up to) `N' threads to parallelize its transforms.
+
+   For example, in the hypothetical cluster of 4-processor nodes, you
+might wish to launch only a single MPI process per node, and then call
+`fftw_plan_with_nthreads(4)' on each process to use all processors in
+the nodes.
+
+   This may or may not be faster than simply using as many MPI processes
+as you have processors, however.  On the one hand, using threads within
+a node eliminates the need for explicit message passing within the
+node.  On the other hand, FFTW's transpose routines are not
+multi-threaded, and this means that the communications that do take
+place will not benefit from parallelization within the node.  Moreover,
+many MPI implementations already have optimizations to exploit shared
+memory when it is available, so adding the multithreaded FFTW on top of
+this may be superfluous.  
+
+\1f
+File: fftw3.info,  Node: FFTW MPI Reference,  Next: FFTW MPI Fortran Interface,  Prev: Combining MPI and Threads,  Up: Distributed-memory FFTW with MPI
+
+6.12 FFTW MPI Reference
+=======================
+
+This chapter provides a complete reference to all FFTW MPI functions,
+datatypes, and constants.  See also *note FFTW Reference:: for
+information on functions and types in common with the serial interface.
+
+* Menu:
+
+* MPI Files and Data Types::
+* MPI Initialization::
+* Using MPI Plans::
+* MPI Data Distribution Functions::
+* MPI Plan Creation::
+* MPI Wisdom Communication::
+
+\1f
+File: fftw3.info,  Node: MPI Files and Data Types,  Next: MPI Initialization,  Prev: FFTW MPI Reference,  Up: FFTW MPI Reference
+
+6.12.1 MPI Files and Data Types
+-------------------------------
+
+All programs using FFTW's MPI support should include its header file:
+
+     #include <fftw3-mpi.h>
+
+   Note that this header file includes the serial-FFTW `fftw3.h' header
+file, and also the `mpi.h' header file for MPI, so you need not include
+those files separately.
+
+   You must also link to _both_ the FFTW MPI library and to the serial
+FFTW library.  On Unix, this means adding `-lfftw3_mpi -lfftw3 -lm' at
+the end of the link command.
+
+   Different precisions are handled as in the serial interface: *Note
+Precision::.  That is, `fftw_' functions become `fftwf_' (in single
+precision) etcetera, and the libraries become `-lfftw3f_mpi -lfftw3f
+-lm' etcetera on Unix.  Long-double precision is supported in MPI, but
+quad precision (`fftwq_') is not due to the lack of MPI support for
+this type.
+
+\1f
+File: fftw3.info,  Node: MPI Initialization,  Next: Using MPI Plans,  Prev: MPI Files and Data Types,  Up: FFTW MPI Reference
+
+6.12.2 MPI Initialization
+-------------------------
+
+Before calling any other FFTW MPI (`fftw_mpi_') function, and before
+importing any wisdom for MPI problems, you must call:
+
+     void fftw_mpi_init(void);
+
+   If FFTW threads support is used, however, `fftw_mpi_init' should be
+called _after_ `fftw_init_threads' (*note Combining MPI and Threads::).
+Calling `fftw_mpi_init' additional times (before `fftw_mpi_cleanup')
+has no effect.
+
+   If you want to deallocate all persistent data and reset FFTW to the
+pristine state it was in when you started your program, you can call:
+
+     void fftw_mpi_cleanup(void);
+
+   (This calls `fftw_cleanup', so you need not call the serial cleanup
+routine too, although it is safe to do so.)  After calling
+`fftw_mpi_cleanup', all existing plans become undefined, and you should
+not attempt to execute or destroy them.  You must call `fftw_mpi_init'
+again after `fftw_mpi_cleanup' if you want to resume using the MPI FFTW
+routines.
+
+\1f
+File: fftw3.info,  Node: Using MPI Plans,  Next: MPI Data Distribution Functions,  Prev: MPI Initialization,  Up: FFTW MPI Reference
+
+6.12.3 Using MPI Plans
+----------------------
+
+Once an MPI plan is created, you can execute and destroy it using
+`fftw_execute', `fftw_destroy_plan', and the other functions in the
+serial interface that operate on generic plans (*note Using Plans::).
+
+   The `fftw_execute' and `fftw_destroy_plan' functions, applied to MPI
+plans, are _collective_ calls: they must be called for all processes in
+the communicator that was used to create the plan.
+
+   You must _not_ use the serial new-array plan-execution functions
+`fftw_execute_dft' and so on (*note New-array Execute Functions::) with
+MPI plans.  Such functions are specialized to the problem type, and
+there are specific new-array execute functions for MPI plans:
+
+     void fftw_mpi_execute_dft(fftw_plan p, fftw_complex *in, fftw_complex *out);
+     void fftw_mpi_execute_dft_r2c(fftw_plan p, double *in, fftw_complex *out);
+     void fftw_mpi_execute_dft_c2r(fftw_plan p, fftw_complex *in, double *out);
+     void fftw_mpi_execute_r2r(fftw_plan p, double *in, double *out);
+
+   These functions have the same restrictions as those of the serial
+new-array execute functions.  They are _always_ safe to apply to the
+_same_ `in' and `out' arrays that were used to create the plan.  They
+can only be applied to new arrarys if those arrays have the same types,
+dimensions, in-placeness, and alignment as the original arrays, where
+the best way to ensure the same alignment is to use FFTW's
+`fftw_malloc' and related allocation functions for all arrays (*note
+Memory Allocation::).  Note that distributed transposes (*note FFTW MPI
+Transposes::) use `fftw_mpi_execute_r2r', since they count as rank-zero
+r2r plans from FFTW's perspective.
+
+\1f
+File: fftw3.info,  Node: MPI Data Distribution Functions,  Next: MPI Plan Creation,  Prev: Using MPI Plans,  Up: FFTW MPI Reference
+
+6.12.4 MPI Data Distribution Functions
+--------------------------------------
+
+As described above (*note MPI Data Distribution::), in order to
+allocate your arrays, _before_ creating a plan, you must first call one
+of the following routines to determine the required allocation size and
+the portion of the array locally stored on a given process.  The
+`MPI_Comm' communicator passed here must be equivalent to the
+communicator used below for plan creation.
+
+   The basic interface for multidimensional transforms consists of the
+functions:
+
+     ptrdiff_t fftw_mpi_local_size_2d(ptrdiff_t n0, ptrdiff_t n1, MPI_Comm comm,
+                                      ptrdiff_t *local_n0, ptrdiff_t *local_0_start);
+     ptrdiff_t fftw_mpi_local_size_3d(ptrdiff_t n0, ptrdiff_t n1, ptrdiff_t n2,
+                                      MPI_Comm comm,
+                                      ptrdiff_t *local_n0, ptrdiff_t *local_0_start);
+     ptrdiff_t fftw_mpi_local_size(int rnk, const ptrdiff_t *n, MPI_Comm comm,
+                                   ptrdiff_t *local_n0, ptrdiff_t *local_0_start);
+
+     ptrdiff_t fftw_mpi_local_size_2d_transposed(ptrdiff_t n0, ptrdiff_t n1, MPI_Comm comm,
+                                                 ptrdiff_t *local_n0, ptrdiff_t *local_0_start,
+                                                 ptrdiff_t *local_n1, ptrdiff_t *local_1_start);
+     ptrdiff_t fftw_mpi_local_size_3d_transposed(ptrdiff_t n0, ptrdiff_t n1, ptrdiff_t n2,
+                                                 MPI_Comm comm,
+                                                 ptrdiff_t *local_n0, ptrdiff_t *local_0_start,
+                                                 ptrdiff_t *local_n1, ptrdiff_t *local_1_start);
+     ptrdiff_t fftw_mpi_local_size_transposed(int rnk, const ptrdiff_t *n, MPI_Comm comm,
+                                              ptrdiff_t *local_n0, ptrdiff_t *local_0_start,
+                                              ptrdiff_t *local_n1, ptrdiff_t *local_1_start);
+
+   These functions return the number of elements to allocate (complex
+numbers for DFT/r2c/c2r plans, real numbers for r2r plans), whereas the
+`local_n0' and `local_0_start' return the portion (`local_0_start' to
+`local_0_start + local_n0 - 1') of the first dimension of an n[0] x
+n[1] x n[2] x ... x n[d-1]  array that is stored on the local process.
+*Note Basic and advanced distribution interfaces::.  For
+`FFTW_MPI_TRANSPOSED_OUT' plans, the `_transposed' variants are useful
+in order to also return the local portion of the first dimension in the
+n[1] x n[0] x n[2] x ... x n[d-1]  transposed output.  *Note Transposed
+distributions::.  The advanced interface for multidimensional
+transforms is:
+
+     ptrdiff_t fftw_mpi_local_size_many(int rnk, const ptrdiff_t *n, ptrdiff_t howmany,
+                                        ptrdiff_t block0, MPI_Comm comm,
+                                        ptrdiff_t *local_n0, ptrdiff_t *local_0_start);
+     ptrdiff_t fftw_mpi_local_size_many_transposed(int rnk, const ptrdiff_t *n, ptrdiff_t howmany,
+                                                   ptrdiff_t block0, ptrdiff_t block1, MPI_Comm comm,
+                                                   ptrdiff_t *local_n0, ptrdiff_t *local_0_start,
+                                                   ptrdiff_t *local_n1, ptrdiff_t *local_1_start);
+
+   These differ from the basic interface in only two ways.  First, they
+allow you to specify block sizes `block0' and `block1' (the latter for
+the transposed output); you can pass `FFTW_MPI_DEFAULT_BLOCK' to use
+FFTW's default block size as in the basic interface.  Second, you can
+pass a `howmany' parameter, corresponding to the advanced planning
+interface below: this is for transforms of contiguous `howmany'-tuples
+of numbers (`howmany = 1' in the basic interface).
+
+   The corresponding basic and advanced routines for one-dimensional
+transforms (currently only complex DFTs) are:
+
+     ptrdiff_t fftw_mpi_local_size_1d(
+                  ptrdiff_t n0, MPI_Comm comm, int sign, unsigned flags,
+                  ptrdiff_t *local_ni, ptrdiff_t *local_i_start,
+                  ptrdiff_t *local_no, ptrdiff_t *local_o_start);
+     ptrdiff_t fftw_mpi_local_size_many_1d(
+                  ptrdiff_t n0, ptrdiff_t howmany,
+                  MPI_Comm comm, int sign, unsigned flags,
+                  ptrdiff_t *local_ni, ptrdiff_t *local_i_start,
+                  ptrdiff_t *local_no, ptrdiff_t *local_o_start);
+
+   As above, the return value is the number of elements to allocate
+(complex numbers, for complex DFTs).  The `local_ni' and
+`local_i_start' arguments return the portion (`local_i_start' to
+`local_i_start + local_ni - 1') of the 1d array that is stored on this
+process for the transform _input_, and `local_no' and `local_o_start'
+are the corresponding quantities for the input.  The `sign'
+(`FFTW_FORWARD' or `FFTW_BACKWARD') and `flags' must match the
+arguments passed when creating a plan.  Although the inputs and outputs
+have different data distributions in general, it is guaranteed that the
+_output_ data distribution of an `FFTW_FORWARD' plan will match the
+_input_ data distribution of an `FFTW_BACKWARD' plan and vice versa;
+similarly for the `FFTW_MPI_SCRAMBLED_OUT' and `FFTW_MPI_SCRAMBLED_IN'
+flags.  *Note One-dimensional distributions::.
+
+\1f
+File: fftw3.info,  Node: MPI Plan Creation,  Next: MPI Wisdom Communication,  Prev: MPI Data Distribution Functions,  Up: FFTW MPI Reference
+
+6.12.5 MPI Plan Creation
+------------------------
+
+Complex-data MPI DFTs
+.....................
+
+Plans for complex-data DFTs (*note 2d MPI example::) are created by:
+
+     fftw_plan fftw_mpi_plan_dft_1d(ptrdiff_t n0, fftw_complex *in, fftw_complex *out,
+                                    MPI_Comm comm, int sign, unsigned flags);
+     fftw_plan fftw_mpi_plan_dft_2d(ptrdiff_t n0, ptrdiff_t n1,
+                                    fftw_complex *in, fftw_complex *out,
+                                    MPI_Comm comm, int sign, unsigned flags);
+     fftw_plan fftw_mpi_plan_dft_3d(ptrdiff_t n0, ptrdiff_t n1, ptrdiff_t n2,
+                                    fftw_complex *in, fftw_complex *out,
+                                    MPI_Comm comm, int sign, unsigned flags);
+     fftw_plan fftw_mpi_plan_dft(int rnk, const ptrdiff_t *n,
+                                 fftw_complex *in, fftw_complex *out,
+                                 MPI_Comm comm, int sign, unsigned flags);
+     fftw_plan fftw_mpi_plan_many_dft(int rnk, const ptrdiff_t *n,
+                                      ptrdiff_t howmany, ptrdiff_t block, ptrdiff_t tblock,
+                                      fftw_complex *in, fftw_complex *out,
+                                      MPI_Comm comm, int sign, unsigned flags);
+
+   These are similar to their serial counterparts (*note Complex DFTs::)
+in specifying the dimensions, sign, and flags of the transform.  The
+`comm' argument gives an MPI communicator that specifies the set of
+processes to participate in the transform; plan creation is a
+collective function that must be called for all processes in the
+communicator.  The `in' and `out' pointers refer only to a portion of
+the overall transform data (*note MPI Data Distribution::) as specified
+by the `local_size' functions in the previous section.  Unless `flags'
+contains `FFTW_ESTIMATE', these arrays are overwritten during plan
+creation as for the serial interface.  For multi-dimensional
+transforms, any dimensions `> 1' are supported; for one-dimensional
+transforms, only composite (non-prime) `n0' are currently supported
+(unlike the serial FFTW).  Requesting an unsupported transform size
+will yield a `NULL' plan.  (As in the serial interface, highly
+composite sizes generally yield the best performance.)
+
+   The advanced-interface `fftw_mpi_plan_many_dft' additionally allows
+you to specify the block sizes for the first dimension (`block') of the
+n[0] x n[1] x n[2] x ... x n[d-1]  input data and the first dimension
+(`tblock') of the n[1] x n[0] x n[2] x ... x n[d-1]  transposed data
+(at intermediate steps of the transform, and for the output if
+`FFTW_TRANSPOSED_OUT' is specified in `flags').  These must be the same
+block sizes as were passed to the corresponding `local_size' function;
+you can pass `FFTW_MPI_DEFAULT_BLOCK' to use FFTW's default block size
+as in the basic interface.  Also, the `howmany' parameter specifies
+that the transform is of contiguous `howmany'-tuples rather than
+individual complex numbers; this corresponds to the same parameter in
+the serial advanced interface (*note Advanced Complex DFTs::) with
+`stride = howmany' and `dist = 1'.
+
+MPI flags
+.........
+
+The `flags' can be any of those for the serial FFTW (*note Planner
+Flags::), and in addition may include one or more of the following
+MPI-specific flags, which improve performance at the cost of changing
+the output or input data formats.
+
+   * `FFTW_MPI_SCRAMBLED_OUT', `FFTW_MPI_SCRAMBLED_IN': valid for 1d
+     transforms only, these flags indicate that the output/input of the
+     transform are in an undocumented "scrambled" order.  A forward
+     `FFTW_MPI_SCRAMBLED_OUT' transform can be inverted by a backward
+     `FFTW_MPI_SCRAMBLED_IN' (times the usual 1/N normalization).
+     *Note One-dimensional distributions::.
+
+   * `FFTW_MPI_TRANSPOSED_OUT', `FFTW_MPI_TRANSPOSED_IN': valid for
+     multidimensional (`rnk > 1') transforms only, these flags specify
+     that the output or input of an n[0] x n[1] x n[2] x ... x n[d-1]
+     transform is transposed to n[1] x n[0] x n[2] x ... x n[d-1] .
+     *Note Transposed distributions::.
+
+
+Real-data MPI DFTs
+..................
+
+Plans for real-input/output (r2c/c2r) DFTs (*note Multi-dimensional MPI
+DFTs of Real Data::) are created by:
+
+     fftw_plan fftw_mpi_plan_dft_r2c_2d(ptrdiff_t n0, ptrdiff_t n1,
+                                        double *in, fftw_complex *out,
+                                        MPI_Comm comm, unsigned flags);
+     fftw_plan fftw_mpi_plan_dft_r2c_2d(ptrdiff_t n0, ptrdiff_t n1,
+                                        double *in, fftw_complex *out,
+                                        MPI_Comm comm, unsigned flags);
+     fftw_plan fftw_mpi_plan_dft_r2c_3d(ptrdiff_t n0, ptrdiff_t n1, ptrdiff_t n2,
+                                        double *in, fftw_complex *out,
+                                        MPI_Comm comm, unsigned flags);
+     fftw_plan fftw_mpi_plan_dft_r2c(int rnk, const ptrdiff_t *n,
+                                     double *in, fftw_complex *out,
+                                     MPI_Comm comm, unsigned flags);
+     fftw_plan fftw_mpi_plan_dft_c2r_2d(ptrdiff_t n0, ptrdiff_t n1,
+                                        fftw_complex *in, double *out,
+                                        MPI_Comm comm, unsigned flags);
+     fftw_plan fftw_mpi_plan_dft_c2r_2d(ptrdiff_t n0, ptrdiff_t n1,
+                                        fftw_complex *in, double *out,
+                                        MPI_Comm comm, unsigned flags);
+     fftw_plan fftw_mpi_plan_dft_c2r_3d(ptrdiff_t n0, ptrdiff_t n1, ptrdiff_t n2,
+                                        fftw_complex *in, double *out,
+                                        MPI_Comm comm, unsigned flags);
+     fftw_plan fftw_mpi_plan_dft_c2r(int rnk, const ptrdiff_t *n,
+                                     fftw_complex *in, double *out,
+                                     MPI_Comm comm, unsigned flags);
+
+   Similar to the serial interface (*note Real-data DFTs::), these
+transform logically n[0] x n[1] x n[2] x ... x n[d-1]  real data
+to/from n[0] x n[1] x n[2] x ... x (n[d-1]/2 + 1)  complex data,
+representing the non-redundant half of the conjugate-symmetry output of
+a real-input DFT (*note Multi-dimensional Transforms::).  However, the
+real array must be stored within a padded n[0] x n[1] x n[2] x ... x [2
+(n[d-1]/2 + 1)]
+
+   array (much like the in-place serial r2c transforms, but here for
+out-of-place transforms as well). Currently, only multi-dimensional
+(`rnk > 1') r2c/c2r transforms are supported (requesting a plan for
+`rnk = 1' will yield `NULL').  As explained above (*note
+Multi-dimensional MPI DFTs of Real Data::), the data distribution of
+both the real and complex arrays is given by the `local_size' function
+called for the dimensions of the _complex_ array.  Similar to the other
+planning functions, the input and output arrays are overwritten when
+the plan is created except in `FFTW_ESTIMATE' mode.
+
+   As for the complex DFTs above, there is an advance interface that
+allows you to manually specify block sizes and to transform contiguous
+`howmany'-tuples of real/complex numbers:
+
+     fftw_plan fftw_mpi_plan_many_dft_r2c
+                   (int rnk, const ptrdiff_t *n, ptrdiff_t howmany,
+                    ptrdiff_t iblock, ptrdiff_t oblock,
+                    double *in, fftw_complex *out,
+                    MPI_Comm comm, unsigned flags);
+     fftw_plan fftw_mpi_plan_many_dft_c2r
+                   (int rnk, const ptrdiff_t *n, ptrdiff_t howmany,
+                    ptrdiff_t iblock, ptrdiff_t oblock,
+                    fftw_complex *in, double *out,
+                    MPI_Comm comm, unsigned flags);
+
+MPI r2r transforms
+..................
+
+There are corresponding plan-creation routines for r2r transforms
+(*note More DFTs of Real Data::), currently supporting multidimensional
+(`rnk > 1') transforms only (`rnk = 1' will yield a `NULL' plan):
+
+     fftw_plan fftw_mpi_plan_r2r_2d(ptrdiff_t n0, ptrdiff_t n1,
+                                    double *in, double *out,
+                                    MPI_Comm comm,
+                                    fftw_r2r_kind kind0, fftw_r2r_kind kind1,
+                                    unsigned flags);
+     fftw_plan fftw_mpi_plan_r2r_3d(ptrdiff_t n0, ptrdiff_t n1, ptrdiff_t n2,
+                                    double *in, double *out,
+                                    MPI_Comm comm,
+                                    fftw_r2r_kind kind0, fftw_r2r_kind kind1, fftw_r2r_kind kind2,
+                                    unsigned flags);
+     fftw_plan fftw_mpi_plan_r2r(int rnk, const ptrdiff_t *n,
+                                 double *in, double *out,
+                                 MPI_Comm comm, const fftw_r2r_kind *kind,
+                                 unsigned flags);
+     fftw_plan fftw_mpi_plan_many_r2r(int rnk, const ptrdiff_t *n,
+                                      ptrdiff_t iblock, ptrdiff_t oblock,
+                                      double *in, double *out,
+                                      MPI_Comm comm, const fftw_r2r_kind *kind,
+                                      unsigned flags);
+
+   The parameters are much the same as for the complex DFTs above,
+except that the arrays are of real numbers (and hence the outputs of the
+`local_size' data-distribution functions should be interpreted as
+counts of real rather than complex numbers).  Also, the `kind'
+parameters specify the r2r kinds along each dimension as for the serial
+interface (*note Real-to-Real Transform Kinds::).  *Note Other
+Multi-dimensional Real-data MPI Transforms::.
+
+MPI transposition
+.................
+
+FFTW also provides routines to plan a transpose of a distributed `n0'
+by `n1' array of real numbers, or an array of `howmany'-tuples of real
+numbers with specified block sizes (*note FFTW MPI Transposes::):
+
+     fftw_plan fftw_mpi_plan_transpose(ptrdiff_t n0, ptrdiff_t n1,
+                                       double *in, double *out,
+                                       MPI_Comm comm, unsigned flags);
+     fftw_plan fftw_mpi_plan_many_transpose
+                     (ptrdiff_t n0, ptrdiff_t n1, ptrdiff_t howmany,
+                      ptrdiff_t block0, ptrdiff_t block1,
+                      double *in, double *out, MPI_Comm comm, unsigned flags);
+
+   These plans are used with the `fftw_mpi_execute_r2r' new-array
+execute function (*note Using MPI Plans::), since they count as (rank
+zero) r2r plans from FFTW's perspective.
+
+\1f
+File: fftw3.info,  Node: MPI Wisdom Communication,  Prev: MPI Plan Creation,  Up: FFTW MPI Reference
+
+6.12.6 MPI Wisdom Communication
+-------------------------------
+
+To facilitate synchronizing wisdom among the different MPI processes,
+we provide two functions:
+
+     void fftw_mpi_gather_wisdom(MPI_Comm comm);
+     void fftw_mpi_broadcast_wisdom(MPI_Comm comm);
+
+   The `fftw_mpi_gather_wisdom' function gathers all wisdom in the
+given communicator `comm' to the process of rank 0 in the communicator:
+that process obtains the union of all wisdom on all the processes.  As
+a side effect, some other processes will gain additional wisdom from
+other processes, but only process 0 will gain the complete union.
+
+   The `fftw_mpi_broadcast_wisdom' does the reverse: it exports wisdom
+from process 0 in `comm' to all other processes in the communicator,
+replacing any wisdom they currently have.
+
+   *Note FFTW MPI Wisdom::.
+
+\1f
+File: fftw3.info,  Node: FFTW MPI Fortran Interface,  Prev: FFTW MPI Reference,  Up: Distributed-memory FFTW with MPI
+
+6.13 FFTW MPI Fortran Interface
+===============================
+
+The FFTW MPI interface is callable from modern Fortran compilers
+supporting the Fortran 2003 `iso_c_binding' standard for calling C
+functions.  As described in *note Calling FFTW from Modern Fortran::,
+this means that you can directly call FFTW's C interface from Fortran
+with only minor changes in syntax.  There are, however, a few things
+specific to the MPI interface to keep in mind:
+
+   * Instead of including `fftw3.f03' as in *note Overview of Fortran
+     interface::, you should `include 'fftw3-mpi.f03'' (after `use,
+     intrinsic :: iso_c_binding' as before).  The `fftw3-mpi.f03' file
+     includes `fftw3.f03', so you should _not_ `include' them both
+     yourself.  (You will also want to include the MPI header file,
+     usually via `include 'mpif.h'' or similar, although though this is
+     not needed by `fftw3-mpi.f03' per se.)  (To use the `fftwl_' `long
+     double' extended-precision routines in supporting compilers, you
+     should include `fftw3f-mpi.f03' in _addition_ to `fftw3-mpi.f03'.
+     *Note Extended and quadruple precision in Fortran::.)
+
+   * Because of the different storage conventions between C and Fortran,
+     you reverse the order of your array dimensions when passing them to
+     FFTW (*note Reversing array dimensions::).  This is merely a
+     difference in notation and incurs no performance overhead.
+     However, it means that, whereas in C the _first_ dimension is
+     distributed, in Fortran the _last_ dimension of your array is
+     distributed.
+
+   * In Fortran, communicators are stored as `integer' types; there is
+     no `MPI_Comm' type, nor is there any way to access a C `MPI_Comm'.
+     Fortunately, this is taken care of for you by the FFTW Fortran
+     interface: whenever the C interface expects an `MPI_Comm' type,
+     you should pass the Fortran communicator as an `integer'.(1)
+
+   * Because you need to call the `local_size' function to find out how
+     much space to allocate, and this may be _larger_ than the local
+     portion of the array (*note MPI Data Distribution::), you should
+     _always_ allocate your arrays dynamically using FFTW's allocation
+     routines as described in *note Allocating aligned memory in
+     Fortran::.  (Coincidentally, this also provides the best
+     performance by guaranteeding proper data alignment.)
+
+   * Because all sizes in the MPI FFTW interface are declared as
+     `ptrdiff_t' in C, you should use `integer(C_INTPTR_T)' in Fortran
+     (*note FFTW Fortran type reference::).
+
+   * In Fortran, because of the language semantics, we generally
+     recommend using the new-array execute functions for all plans,
+     even in the common case where you are executing the plan on the
+     same arrays for which the plan was created (*note Plan execution
+     in Fortran::).  However, note that in the MPI interface these
+     functions are changed: `fftw_execute_dft' becomes
+     `fftw_mpi_execute_dft', etcetera. *Note Using MPI Plans::.
+
+
+   For example, here is a Fortran code snippet to perform a distributed
+L x M  complex DFT in-place.  (This assumes you have already
+initialized MPI with `MPI_init' and have also performed `call
+fftw_mpi_init'.)
+
+       use, intrinsic :: iso_c_binding
+       include 'fftw3-mpi.f03'
+       integer(C_INTPTR_T), parameter :: L = ...
+       integer(C_INTPTR_T), parameter :: M = ...
+       type(C_PTR) :: plan, cdata
+       complex(C_DOUBLE_COMPLEX), pointer :: data(:,:)
+       integer(C_INTPTR_T) :: i, j, alloc_local, local_M, local_j_offset
+
+     !   get local data size and allocate (note dimension reversal)
+       alloc_local = fftw_mpi_local_size_2d(M, L, MPI_COMM_WORLD, &
+                                            local_M, local_j_offset)
+       cdata = fftw_alloc_complex(alloc_local)
+       call c_f_pointer(cdata, data, [L,local_M])
+
+     !   create MPI plan for in-place forward DFT (note dimension reversal)
+       plan = fftw_mpi_plan_dft_2d(M, L, data, data, MPI_COMM_WORLD, &
+                                   FFTW_FORWARD, FFTW_MEASURE)
+
+     ! initialize data to some function my_function(i,j)
+       do j = 1, local_M
+         do i = 1, L
+           data(i, j) = my_function(i, j + local_j_offset)
+         end do
+       end do
+
+     ! compute transform (as many times as desired)
+       call fftw_mpi_execute_dft(plan, data, data)
+
+       call fftw_destroy_plan(plan)
+       call fftw_free(cdata)
+
+   Note that when we called `fftw_mpi_local_size_2d' and
+`fftw_mpi_plan_dft_2d' with the dimensions in reversed order, since a L
+x M  Fortran array is viewed by FFTW in C as a M x L  array.  This
+means that the array was distributed over the `M' dimension, the local
+portion of which is a L x local_M  array in Fortran.  (You must _not_
+use an `allocate' statement to allocate an L x local_M  array, however;
+you must allocate `alloc_local' complex numbers, which may be greater
+than `L * local_M', in order to reserve space for intermediate steps of
+the transform.)  Finally, we mention that because C's array indices are
+zero-based, the `local_j_offset' argument can conveniently be
+interpreted as an offset in the 1-based `j' index (rather than as a
+starting index as in C).
+
+   If instead you had used the `ior(FFTW_MEASURE,
+FFTW_MPI_TRANSPOSED_OUT)' flag, the output of the transform would be a
+transposed M x local_L  array, associated with the _same_ `cdata'
+allocation (since the transform is in-place), and which you could
+declare with:
+
+       complex(C_DOUBLE_COMPLEX), pointer :: tdata(:,:)
+       ...
+       call c_f_pointer(cdata, tdata, [M,local_L])
+
+   where `local_L' would have been obtained by changing the
+`fftw_mpi_local_size_2d' call to:
+
+       alloc_local = fftw_mpi_local_size_2d_transposed(M, L, MPI_COMM_WORLD, &
+                                local_M, local_j_offset, local_L, local_i_offset)
+
+   ---------- Footnotes ----------
+
+   (1) Technically, this is because you aren't actually calling the C
+functions directly. You are calling wrapper functions that translate
+the communicator with `MPI_Comm_f2c' before calling the ordinary C
+interface.  This is all done transparently, however, since the
+`fftw3-mpi.f03' interface file renames the wrappers so that they are
+called in Fortran with the same names as the C interface functions.
+
+\1f
+File: fftw3.info,  Node: Calling FFTW from Modern Fortran,  Next: Calling FFTW from Legacy Fortran,  Prev: Distributed-memory FFTW with MPI,  Up: Top
+
+7 Calling FFTW from Modern Fortran
+**********************************
+
+Fortran 2003 standardized ways for Fortran code to call C libraries,
+and this allows us to support a direct translation of the FFTW C API
+into Fortran.  Compared to the legacy Fortran 77 interface (*note
+Calling FFTW from Legacy Fortran::), this direct interface offers many
+advantages, especially compile-time type-checking and aligned memory
+allocation.  As of this writing, support for these C interoperability
+features seems widespread, having been implemented in nearly all major
+Fortran compilers (e.g. GNU, Intel, IBM, Oracle/Solaris, Portland
+Group, NAG).  
+
+   This chapter documents that interface.  For the most part, since this
+interface allows Fortran to call the C interface directly, the usage is
+identical to C translated to Fortran syntax.  However, there are a few
+subtle points such as memory allocation, wisdom, and data types that
+deserve closer attention.
+
+* Menu:
+
+* Overview of Fortran interface::
+* Reversing array dimensions::
+* FFTW Fortran type reference::
+* Plan execution in Fortran::
+* Allocating aligned memory in Fortran::
+* Accessing the wisdom API from Fortran::
+* Defining an FFTW module::
+
+\1f
+File: fftw3.info,  Node: Overview of Fortran interface,  Next: Reversing array dimensions,  Prev: Calling FFTW from Modern Fortran,  Up: Calling FFTW from Modern Fortran
+
+7.1 Overview of Fortran interface
+=================================
+
+FFTW provides a file `fftw3.f03' that defines Fortran 2003 interfaces
+for all of its C routines, except for the MPI routines described
+elsewhere, which can be found in the same directory as `fftw3.h' (the C
+header file).  In any Fortran subroutine where you want to use FFTW
+functions, you should begin with:
+
+       use, intrinsic :: iso_c_binding
+       include 'fftw3.f03'
+
+   This includes the interface definitions and the standard
+`iso_c_binding' module (which defines the equivalents of C types).  You
+can also put the FFTW functions into a module if you prefer (*note
+Defining an FFTW module::).
+
+   At this point, you can now call anything in the FFTW C interface
+directly, almost exactly as in C other than minor changes in syntax.
+For example:
+
+       type(C_PTR) :: plan
+       complex(C_DOUBLE_COMPLEX), dimension(1024,1000) :: in, out
+       plan = fftw_plan_dft_2d(1000,1024, in,out, FFTW_FORWARD,FFTW_ESTIMATE)
+       ...
+       call fftw_execute_dft(plan, in, out)
+       ...
+       call fftw_destroy_plan(plan)
+
+   A few important things to keep in mind are:
+
+   * FFTW plans are `type(C_PTR)'.  Other C types are mapped in the
+     obvious way via the `iso_c_binding' standard: `int' turns into
+     `integer(C_INT)', `fftw_complex' turns into
+     `complex(C_DOUBLE_COMPLEX)', `double' turns into `real(C_DOUBLE)',
+     and so on. *Note FFTW Fortran type reference::.
+
+   * Functions in C become functions in Fortran if they have a return
+     value, and subroutines in Fortran otherwise.
+
+   * The ordering of the Fortran array dimensions must be _reversed_
+     when they are passed to the FFTW plan creation, thanks to
+     differences in array indexing conventions (*note Multi-dimensional
+     Array Format::).  This is _unlike_ the legacy Fortran interface
+     (*note Fortran-interface routines::), which reversed the dimensions
+     for you.  *Note Reversing array dimensions::.
+
+   * Using ordinary Fortran array declarations like this works, but may
+     yield suboptimal performance because the data may not be not
+     aligned to exploit SIMD instructions on modern proessors (*note
+     SIMD alignment and fftw_malloc::). Better performance will often
+     be obtained by allocating with `fftw_alloc'. *Note Allocating
+     aligned memory in Fortran::.
+
+   * Similar to the legacy Fortran interface (*note FFTW Execution in
+     Fortran::), we currently recommend _not_ using `fftw_execute' but
+     rather using the more specialized functions like
+     `fftw_execute_dft' (*note New-array Execute Functions::).
+     However, you should execute the plan on the `same arrays' as the
+     ones for which you created the plan, unless you are especially
+     careful.  *Note Plan execution in Fortran::.  To prevent you from
+     using `fftw_execute' by mistake, the `fftw3.f03' file does not
+     provide an `fftw_execute' interface declaration.
+
+   * Multiple planner flags are combined with `ior' (equivalent to `|'
+     in C).  e.g. `FFTW_MEASURE | FFTW_DESTROY_INPUT' becomes
+     `ior(FFTW_MEASURE, FFTW_DESTROY_INPUT)'.  (You can also use `+' as
+     long as you don't try to include a given flag more than once.)
+
+
+* Menu:
+
+* Extended and quadruple precision in Fortran::
+
+\1f
+File: fftw3.info,  Node: Extended and quadruple precision in Fortran,  Prev: Overview of Fortran interface,  Up: Overview of Fortran interface
+
+7.1.1 Extended and quadruple precision in Fortran
+-------------------------------------------------
+
+If FFTW is compiled in `long double' (extended) precision (*note
+Installation and Customization::), you may be able to call the
+resulting `fftwl_' routines (*note Precision::) from Fortran if your
+compiler supports the `C_LONG_DOUBLE_COMPLEX' type code.
+
+   Because some Fortran compilers do not support
+`C_LONG_DOUBLE_COMPLEX', the `fftwl_' declarations are segregated into
+a separate interface file `fftw3l.f03', which you should include _in
+addition_ to `fftw3.f03' (which declares precision-independent `FFTW_'
+constants):
+
+       use, intrinsic :: iso_c_binding
+       include 'fftw3.f03'
+       include 'fftw3l.f03'
+
+   We also support using the nonstandard `__float128'
+quadruple-precision type provided by recent versions of `gcc' on 32-
+and 64-bit x86 hardware (*note Installation and Customization::), using
+the corresponding `real(16)' and `complex(16)' types supported by
+`gfortran'.  The quadruple-precision `fftwq_' functions (*note
+Precision::) are declared in a `fftw3q.f03' interface file, which
+should be included in addition to `fftw3l.f03', as above.  You should
+also link with `-lfftw3q -lquadmath -lm' as in C.
+
+\1f
+File: fftw3.info,  Node: Reversing array dimensions,  Next: FFTW Fortran type reference,  Prev: Overview of Fortran interface,  Up: Calling FFTW from Modern Fortran
+
+7.2 Reversing array dimensions
+==============================
+
+A minor annoyance in calling FFTW from Fortran is that FFTW's array
+dimensions are defined in the C convention (row-major order), while
+Fortran's array dimensions are the opposite convention (column-major
+order). *Note Multi-dimensional Array Format::.  This is just a
+bookkeeping difference, with no effect on performance.  The only
+consequence of this is that, whenever you create an FFTW plan for a
+multi-dimensional transform, you must always _reverse the ordering of
+the dimensions_.
+
+   For example, consider the three-dimensional (L x M x N ) arrays:
+
+       complex(C_DOUBLE_COMPLEX), dimension(L,M,N) :: in, out
+
+   To plan a DFT for these arrays using `fftw_plan_dft_3d', you could
+do:
+
+       plan = fftw_plan_dft_3d(N,M,L, in,out, FFTW_FORWARD,FFTW_ESTIMATE)
+
+   That is, from FFTW's perspective this is a N x M x L  array.  _No
+data transposition need occur_, as this is _only notation_.  Similarly,
+to use the more generic routine `fftw_plan_dft' with the same arrays,
+you could do:
+
+       integer(C_INT), dimension(3) :: n = [N,M,L]
+       plan = fftw_plan_dft_3d(3, n, in,out, FFTW_FORWARD,FFTW_ESTIMATE)
+
+   Note, by the way, that this is different from the legacy Fortran
+interface (*note Fortran-interface routines::), which automatically
+reverses the order of the array dimension for you.  Here, you are
+calling the C interface directly, so there is no "translation" layer.
+
+   An important thing to keep in mind is the implication of this for
+multidimensional real-to-complex transforms (*note Multi-Dimensional
+DFTs of Real Data::).  In C, a multidimensional real-to-complex DFT
+chops the last dimension roughly in half (N x M x L  real input goes to
+N x M x L/2+1  complex output).  In Fortran, because the array
+dimension notation is reversed, the _first_ dimension of the complex
+data is chopped roughly in half.  For example consider the `r2c'
+transform of L x M x N  real input in Fortran:
+
+       type(C_PTR) :: plan
+       real(C_DOUBLE), dimension(L,M,N) :: in
+       complex(C_DOUBLE_COMPLEX), dimension(L/2+1,M,N) :: out
+       plan = fftw_plan_dft_r2c_3d(N,M,L, in,out, FFTW_ESTIMATE)
+       ...
+       call fftw_execute_dft_r2c(plan, in, out)
+
+   Alternatively, for an in-place r2c transform, as described in the C
+documentation we must _pad_ the _first_ dimension of the real input
+with an extra two entries (which are ignored by FFTW) so as to leave
+enough space for the complex output. The input is _allocated_ as a
+2[L/2+1] x M x N  array, even though only L x M x N  of it is actually
+used.  In this example, we will allocate the array as a pointer type,
+using `fftw_alloc' to ensure aligned memory for maximum performance
+(*note Allocating aligned memory in Fortran::); this also makes it easy
+to reference the same memory as both a real array and a complex array.
+
+       real(C_DOUBLE), pointer :: in(:,:,:)
+       complex(C_DOUBLE_COMPLEX), pointer :: out(:,:,:)
+       type(C_PTR) :: plan, data
+       data = fftw_alloc_complex(int((L/2+1) * M * N, C_SIZE_T))
+       call c_f_pointer(data, in, [2*(L/2+1),M,N])
+       call c_f_pointer(data, out, [L/2+1,M,N])
+       plan = fftw_plan_dft_r2c_3d(N,M,L, in,out, FFTW_ESTIMATE)
+       ...
+       call fftw_execute_dft_r2c(plan, in, out)
+       ...
+       call fftw_destroy_plan(plan)
+       call fftw_free(data)
+
+\1f
+File: fftw3.info,  Node: FFTW Fortran type reference,  Next: Plan execution in Fortran,  Prev: Reversing array dimensions,  Up: Calling FFTW from Modern Fortran
+
+7.3 FFTW Fortran type reference
+===============================
+
+The following are the most important type correspondences between the C
+interface and Fortran:
+
+   * Plans (`fftw_plan' and variants) are `type(C_PTR)' (i.e. an opaque
+     pointer).
+
+   * The C floating-point types `double', `float', and `long double'
+     correspond to `real(C_DOUBLE)', `real(C_FLOAT)', and
+     `real(C_LONG_DOUBLE)', respectively.  The C complex types
+     `fftw_complex', `fftwf_complex', and `fftwl_complex' correspond in
+     Fortran to `complex(C_DOUBLE_COMPLEX)',
+     `complex(C_FLOAT_COMPLEX)', and `complex(C_LONG_DOUBLE_COMPLEX)',
+     respectively.  Just as in C (*note Precision::), the FFTW
+     subroutines and types are prefixed with `fftw_', `fftwf_', and
+     `fftwl_' for the different precisions, and link to different
+     libraries (`-lfftw3', `-lfftw3f', and `-lfftw3l' on Unix), but use
+     the _same_ include file `fftw3.f03' and the _same_ constants (all
+     of which begin with `FFTW_').  The exception is `long double'
+     precision, for which you should _also_ include `fftw3l.f03' (*note
+     Extended and quadruple precision in Fortran::).
+
+   * The C integer types `int' and `unsigned' (used for planner flags)
+     become `integer(C_INT)'.  The C integer type `ptrdiff_t' (e.g. in
+     the *note 64-bit Guru Interface::) becomes `integer(C_INTPTR_T)',
+     and `size_t' (in `fftw_malloc' etc.) becomes `integer(C_SIZE_T)'.
+
+   * The `fftw_r2r_kind' type (*note Real-to-Real Transform Kinds::)
+     becomes `integer(C_FFTW_R2R_KIND)'.  The various constant values
+     of the C enumerated type (`FFTW_R2HC' etc.) become simply integer
+     constants of the same names in Fortran.
+
+   * Numeric array pointer arguments (e.g. `double *') become
+     `dimension(*), intent(out)' arrays of the same type, or
+     `dimension(*), intent(in)' if they are pointers to constant data
+     (e.g. `const int *').  There are a few exceptions where numeric
+     pointers refer to scalar outputs (e.g. for `fftw_flops'), in which
+     case they are `intent(out)' scalar arguments in Fortran too.  For
+     the new-array execute functions (*note New-array Execute
+     Functions::), the input arrays are declared `dimension(*),
+     intent(inout)', since they can be modified in the case of in-place
+     or `FFTW_DESTROY_INPUT' transforms.
+
+   * Pointer _return_ values (e.g `double *') become `type(C_PTR)'.
+     (If they are pointers to arrays, as for `fftw_alloc_real', you can
+     convert them back to Fortran array pointers with the standard
+     intrinsic function `c_f_pointer'.)
+
+   * The `fftw_iodim' type in the guru interface (*note Guru vector and
+     transform sizes::) becomes `type(fftw_iodim)' in Fortran, a
+     derived data type (the Fortran analogue of C's `struct') with
+     three `integer(C_INT)' components: `n', `is', and `os', with the
+     same meanings as in C.  The `fftw_iodim64' type in the 64-bit guru
+     interface (*note 64-bit Guru Interface::) is the same, except that
+     its components are of type `integer(C_INTPTR_T)'.
+
+   * Using the wisdom import/export functions from Fortran is a bit
+     tricky, and is discussed in *note Accessing the wisdom API from
+     Fortran::.  In brief, the `FILE *' arguments map to `type(C_PTR)',
+     `const char *' to `character(C_CHAR), dimension(*), intent(in)'
+     (null-terminated!), and the generic read-char/write-char functions
+     map to `type(C_FUNPTR)'.
+
+
+   You may be wondering if you need to search-and-replace
+`real(kind(0.0d0))' (or whatever your favorite Fortran spelling of
+"double precision" is) with `real(C_DOUBLE)' everywhere in your
+program, and similarly for `complex' and `integer' types.  The answer
+is no; you can still use your existing types.  As long as these types
+match their C counterparts, things should work without a hitch.  The
+worst that can happen, e.g. in the (unlikely) event of a system where
+`real(kind(0.0d0))' is different from `real(C_DOUBLE)', is that the
+compiler will give you a type-mismatch error.  That is, if you don't
+use the `iso_c_binding' kinds you need to accept at least the
+theoretical possibility of having to change your code in response to
+compiler errors on some future machine, but you don't need to worry
+about silently compiling incorrect code that yields runtime errors.
+
+\1f
+File: fftw3.info,  Node: Plan execution in Fortran,  Next: Allocating aligned memory in Fortran,  Prev: FFTW Fortran type reference,  Up: Calling FFTW from Modern Fortran
+
+7.4 Plan execution in Fortran
+=============================
+
+In C, in order to use a plan, one normally calls `fftw_execute', which
+executes the plan to perform the transform on the input/output arrays
+passed when the plan was created (*note Using Plans::).  The
+corresponding subroutine call in modern Fortran is:
+      call fftw_execute(plan)
+   
+   However, we have had reports that this causes problems with some
+recent optimizing Fortran compilers.  The problem is, because the
+input/output arrays are not passed as explicit arguments to
+`fftw_execute', the semantics of Fortran (unlike C) allow the compiler
+to assume that the input/output arrays are not changed by
+`fftw_execute'.  As a consequence, certain compilers end up
+repositioning the call to `fftw_execute', assuming incorrectly that it
+does nothing to the arrays.
+
+   There are various workarounds to this, but the safest and simplest
+thing is to not use `fftw_execute' in Fortran.  Instead, use the
+functions described in *note New-array Execute Functions::, which take
+the input/output arrays as explicit arguments.  For example, if the
+plan is for a complex-data DFT and was created for the arrays `in' and
+`out', you would do:
+      call fftw_execute_dft(plan, in, out)
+   
+   There are a few things to be careful of, however:
+
+   * You must use the correct type of execute function, matching the way
+     the plan was created.  Complex DFT plans should use
+     `fftw_execute_dft', Real-input (r2c) DFT plans should use use
+     `fftw_execute_dft_r2c', and real-output (c2r) DFT plans should use
+     `fftw_execute_dft_c2r'.  The various r2r plans should use
+     `fftw_execute_r2r'.  Fortunately, if you use the wrong one you
+     will get a compile-time type-mismatch error (unlike legacy
+     Fortran).
+
+   * You should normally pass the same input/output arrays that were
+     used when creating the plan.  This is always safe.
+
+   * _If_ you pass _different_ input/output arrays compared to those
+     used when creating the plan, you must abide by all the
+     restrictions of the new-array execute functions (*note New-array
+     Execute Functions::).  The most tricky of these is the requirement
+     that the new arrays have the same alignment as the original
+     arrays; the best (and possibly only) way to guarantee this is to
+     use the `fftw_alloc' functions to allocate your arrays (*note
+     Allocating aligned memory in Fortran::). Alternatively, you can
+     use the `FFTW_UNALIGNED' flag when creating the plan, in which
+     case the plan does not depend on the alignment, but this may
+     sacrifice substantial performance on architectures (like x86) with
+     SIMD instructions (*note SIMD alignment and fftw_malloc::).  
+
+
+\1f
+File: fftw3.info,  Node: Allocating aligned memory in Fortran,  Next: Accessing the wisdom API from Fortran,  Prev: Plan execution in Fortran,  Up: Calling FFTW from Modern Fortran
+
+7.5 Allocating aligned memory in Fortran
+========================================
+
+In order to obtain maximum performance in FFTW, you should store your
+data in arrays that have been specially aligned in memory (*note SIMD
+alignment and fftw_malloc::).  Enforcing alignment also permits you to
+safely use the new-array execute functions (*note New-array Execute
+Functions::) to apply a given plan to more than one pair of in/out
+arrays.  Unfortunately, standard Fortran arrays do _not_ provide any
+alignment guarantees.  The _only_ way to allocate aligned memory in
+standard Fortran is to allocate it with an external C function, like
+the `fftw_alloc_real' and `fftw_alloc_complex' functions.  Fortunately,
+Fortran 2003 provides a simple way to associate such allocated memory
+with a standard Fortran array pointer that you can then use normally.
+
+   We therefore recommend allocating all your input/output arrays using
+the following technique:
+
+  1. Declare a `pointer', `arr', to your array of the desired type and
+     dimensions.  For example, `real(C_DOUBLE), pointer :: a(:,:)' for
+     a 2d real array, or `complex(C_DOUBLE_COMPLEX), pointer ::
+     a(:,:,:)' for a 3d complex array.
+
+  2. The number of elements to allocate must be an `integer(C_SIZE_T)'.
+     You can either declare a variable of this type, e.g.
+     `integer(C_SIZE_T) :: sz', to store the number of elements to
+     allocate, or you can use the `int(..., C_SIZE_T)' intrinsic
+     function. e.g. set `sz = L * M * N' or use `int(L * M * N,
+     C_SIZE_T)' for an L x M x N  array.
+
+  3. Declare a `type(C_PTR) :: p' to hold the return value from FFTW's
+     allocation routine.  Set `p = fftw_alloc_real(sz)' for a real
+     array, or `p = fftw_alloc_complex(sz)' for a complex array.
+
+  4. Associate your pointer `arr' with the allocated memory `p' using
+     the standard `c_f_pointer' subroutine: `call c_f_pointer(p, arr,
+     [...dimensions...])', where `[...dimensions...])' are an array of
+     the dimensions of the array (in the usual Fortran order). e.g.
+     `call c_f_pointer(p, arr, [L,M,N])' for an L x M x N  array.
+     (Alternatively, you can omit the dimensions argument if you
+     specified the shape explicitly when declaring `arr'.)  You can now
+     use `arr' as a usual multidimensional array.
+
+  5. When you are done using the array, deallocate the memory by `call
+     fftw_free(p)' on `p'.
+
+
+   For example, here is how we would allocate an L x M  2d real array:
+
+       real(C_DOUBLE), pointer :: arr(:,:)
+       type(C_PTR) :: p
+       p = fftw_alloc_real(int(L * M, C_SIZE_T))
+       call c_f_pointer(p, arr, [L,M])
+       _...use arr and arr(i,j) as usual..._
+       call fftw_free(p)
+
+   and here is an L x M x N  3d complex array:
+
+       complex(C_DOUBLE_COMPLEX), pointer :: arr(:,:,:)
+       type(C_PTR) :: p
+       p = fftw_alloc_complex(int(L * M * N, C_SIZE_T))
+       call c_f_pointer(p, arr, [L,M,N])
+       _...use arr and arr(i,j,k) as usual..._
+       call fftw_free(p)
+
+   See *note Reversing array dimensions:: for an example allocating a
+single array and associating both real and complex array pointers with
+it, for in-place real-to-complex transforms.
+
+\1f
+File: fftw3.info,  Node: Accessing the wisdom API from Fortran,  Next: Defining an FFTW module,  Prev: Allocating aligned memory in Fortran,  Up: Calling FFTW from Modern Fortran
+
+7.6 Accessing the wisdom API from Fortran
+=========================================
+
+As explained in *note Words of Wisdom-Saving Plans::, FFTW provides a
+"wisdom" API for saving plans to disk so that they can be recreated
+quickly.  The C API for exporting (*note Wisdom Export::) and importing
+(*note Wisdom Import::) wisdom is somewhat tricky to use from Fortran,
+however, because of differences in file I/O and string types between C
+and Fortran.
+
+* Menu:
+
+* Wisdom File Export/Import from Fortran::
+* Wisdom String Export/Import from Fortran::
+* Wisdom Generic Export/Import from Fortran::
+
+\1f
+File: fftw3.info,  Node: Wisdom File Export/Import from Fortran,  Next: Wisdom String Export/Import from Fortran,  Prev: Accessing the wisdom API from Fortran,  Up: Accessing the wisdom API from Fortran
+
+7.6.1 Wisdom File Export/Import from Fortran
+--------------------------------------------
+
+The easiest way to export and import wisdom is to do so using
+`fftw_export_wisdom_to_filename' and `fftw_wisdom_from_filename'.  The
+only trick is that these require you to pass a C string, which is an
+array of type `CHARACTER(C_CHAR)' that is terminated by `C_NULL_CHAR'.
+You can call them like this:
+
+       integer(C_INT) :: ret
+       ret = fftw_export_wisdom_to_filename(C_CHAR_'my_wisdom.dat' // C_NULL_CHAR)
+       if (ret .eq. 0) stop 'error exporting wisdom to file'
+       ret = fftw_import_wisdom_from_filename(C_CHAR_'my_wisdom.dat' // C_NULL_CHAR)
+       if (ret .eq. 0) stop 'error importing wisdom from file'
+
+   Note that prepending `C_CHAR_' is needed to specify that the literal
+string is of kind `C_CHAR', and we null-terminate the string by
+appending `// C_NULL_CHAR'.  These functions return an `integer(C_INT)'
+(`ret') which is `0' if an error occurred during export/import and
+nonzero otherwise.
+
+   It is also possible to use the lower-level routines
+`fftw_export_wisdom_to_file' and `fftw_import_wisdom_from_file', which
+accept parameters of the C type `FILE*', expressed in Fortran as
+`type(C_PTR)'.  However, you are then responsible for creating the
+`FILE*' yourself.  You can do this by using `iso_c_binding' to define
+Fortran intefaces for the C library functions `fopen' and `fclose',
+which is a bit strange in Fortran but workable.
+
+\1f
+File: fftw3.info,  Node: Wisdom String Export/Import from Fortran,  Next: Wisdom Generic Export/Import from Fortran,  Prev: Wisdom File Export/Import from Fortran,  Up: Accessing the wisdom API from Fortran
+
+7.6.2 Wisdom String Export/Import from Fortran
+----------------------------------------------
+
+Dealing with FFTW's C string export/import is a bit more painful.  In
+particular, the `fftw_export_wisdom_to_string' function requires you to
+deal with a dynamically allocated C string.  To get its length, you
+must define an interface to the C `strlen' function, and to deallocate
+it you must define an interface to C `free':
+
+       use, intrinsic :: iso_c_binding
+       interface
+         integer(C_INT) function strlen(s) bind(C, name='strlen')
+           import
+           type(C_PTR), value :: s
+         end function strlen
+         subroutine free(p) bind(C, name='free')
+           import
+           type(C_PTR), value :: p
+         end subroutine free
+       end interface
+
+   Given these definitions, you can then export wisdom to a Fortran
+character array:
+
+       character(C_CHAR), pointer :: s(:)
+       integer(C_SIZE_T) :: slen
+       type(C_PTR) :: p
+       p = fftw_export_wisdom_to_string()
+       if (.not. c_associated(p)) stop 'error exporting wisdom'
+       slen = strlen(p)
+       call c_f_pointer(p, s, [slen+1])
+       ...
+       call free(p)
+   
+   Note that `slen' is the length of the C string, but the length of
+the array is `slen+1' because it includes the terminating null
+character.  (You can omit the `+1' if you don't want Fortran to know
+about the null character.) The standard `c_associated' function checks
+whether `p' is a null pointer, which is returned by
+`fftw_export_wisdom_to_string' if there was an error.
+
+   To import wisdom from a string, use `fftw_import_wisdom_from_string'
+as usual; note that the argument of this function must be a
+`character(C_CHAR)' that is terminated by the `C_NULL_CHAR' character,
+like the `s' array above.
+
+\1f
+File: fftw3.info,  Node: Wisdom Generic Export/Import from Fortran,  Prev: Wisdom String Export/Import from Fortran,  Up: Accessing the wisdom API from Fortran
+
+7.6.3 Wisdom Generic Export/Import from Fortran
+-----------------------------------------------
+
+The most generic wisdom export/import functions allow you to provide an
+arbitrary callback function to read/write one character at a time in
+any way you want.  However, your callback function must be written in a
+special way, using the `bind(C)' attribute to be passed to a C
+interface.
+
+   In particular, to call the generic wisdom export function
+`fftw_export_wisdom', you would write a callback subroutine of the form:
+
+       subroutine my_write_char(c, p) bind(C)
+         use, intrinsic :: iso_c_binding
+         character(C_CHAR), value :: c
+         type(C_PTR), value :: p
+         _...write c..._
+       end subroutine my_write_char
+
+   Given such a subroutine (along with the corresponding interface
+definition), you could then export wisdom using:
+
+       call fftw_export_wisdom(c_funloc(my_write_char), p)
+
+   The standard `c_funloc' intrinsic converts a Fortran `bind(C)'
+subroutine into a C function pointer.  The parameter `p' is a
+`type(C_PTR)' to any arbitrary data that you want to pass to
+`my_write_char' (or `C_NULL_PTR' if none).  (Note that you can get a C
+pointer to Fortran data using the intrinsic `c_loc', and convert it
+back to a Fortran pointer in `my_write_char' using `c_f_pointer'.)
+
+   Similarly, to use the generic `fftw_import_wisdom', you would define
+a callback function of the form:
+
+       integer(C_INT) function my_read_char(p) bind(C)
+         use, intrinsic :: iso_c_binding
+         type(C_PTR), value :: p
+         character :: c
+         _...read a character c..._
+         my_read_char = ichar(c, C_INT)
+       end function my_read_char
+
+       ....
+
+       integer(C_INT) :: ret
+       ret = fftw_import_wisdom(c_funloc(my_read_char), p)
+       if (ret .eq. 0) stop 'error importing wisdom'
+
+   Your function can return `-1' if the end of the input is reached.
+Again, `p' is an arbitrary `type(C_PTR' that is passed through to your
+function.  `fftw_import_wisdom' returns `0' if an error occurred and
+nonzero otherwise.
+
+\1f
+File: fftw3.info,  Node: Defining an FFTW module,  Prev: Accessing the wisdom API from Fortran,  Up: Calling FFTW from Modern Fortran
+
+7.7 Defining an FFTW module
+===========================
+
+Rather than using the `include' statement to include the `fftw3.f03'
+interface file in any subroutine where you want to use FFTW, you might
+prefer to define an FFTW Fortran module.  FFTW does not install itself
+as a module, primarily because `fftw3.f03' can be shared between
+different Fortran compilers while modules (in general) cannot.
+However, it is trivial to define your own FFTW module if you want.
+Just create a file containing:
+
+       module FFTW3
+         use, intrinsic :: iso_c_binding
+         include 'fftw3.f03'
+       end module
+
+   Compile this file into a module as usual for your compiler (e.g. with
+`gfortran -c' you will get a file `fftw3.mod').  Now, instead of
+`include 'fftw3.f03'', whenever you want to use FFTW routines you can
+just do:
+
+       use FFTW3
+
+   as usual for Fortran modules.  (You still need to link to the FFTW
+library, of course.)
+
+\1f
+File: fftw3.info,  Node: Calling FFTW from Legacy Fortran,  Next: Upgrading from FFTW version 2,  Prev: Calling FFTW from Modern Fortran,  Up: Top
+
+8 Calling FFTW from Legacy Fortran
+**********************************
+
+This chapter describes the interface to FFTW callable by Fortran code
+in older compilers not supporting the Fortran 2003 C interoperability
+features (*note Calling FFTW from Modern Fortran::).  This interface
+has the major disadvantage that it is not type-checked, so if you
+mistake the argument types or ordering then your program will not have
+any compiler errors, and will likely crash at runtime.  So, greater
+care is needed.  Also, technically interfacing older Fortran versions
+to C is nonstandard, but in practice we have found that the techniques
+used in this chapter have worked with all known Fortran compilers for
+many years.
+
+   The legacy Fortran interface differs from the C interface only in the
+prefix (`dfftw_' instead of `fftw_' in double precision) and a few
+other minor details.  This Fortran interface is included in the FFTW
+libraries by default, unless a Fortran compiler isn't found on your
+system or `--disable-fortran' is included in the `configure' flags.  We
+assume here that the reader is already familiar with the usage of FFTW
+in C, as described elsewhere in this manual.
+
+   The MPI parallel interface to FFTW is _not_ currently available to
+legacy Fortran.
+
+* Menu:
+
+* Fortran-interface routines::
+* FFTW Constants in Fortran::
+* FFTW Execution in Fortran::
+* Fortran Examples::
+* Wisdom of Fortran?::
+
+\1f
+File: fftw3.info,  Node: Fortran-interface routines,  Next: FFTW Constants in Fortran,  Prev: Calling FFTW from Legacy Fortran,  Up: Calling FFTW from Legacy Fortran
+
+8.1 Fortran-interface routines
+==============================
+
+Nearly all of the FFTW functions have Fortran-callable equivalents.
+The name of the legacy Fortran routine is the same as that of the
+corresponding C routine, but with the `fftw_' prefix replaced by
+`dfftw_'.(1)  The single and long-double precision versions use
+`sfftw_' and `lfftw_', respectively, instead of `fftwf_' and `fftwl_';
+quadruple precision (`real*16') is available on some systems as
+`fftwq_' (*note Precision::).  (Note that `long double' on x86 hardware
+is usually at most 80-bit extended precision, _not_ quadruple
+precision.)
+
+   For the most part, all of the arguments to the functions are the
+same, with the following exceptions:
+
+   * `plan' variables (what would be of type `fftw_plan' in C), must be
+     declared as a type that is at least as big as a pointer (address)
+     on your machine.  We recommend using `integer*8' everywhere, since
+     this should always be big enough.  
+
+   * Any function that returns a value (e.g. `fftw_plan_dft') is
+     converted into a _subroutine_.  The return value is converted into
+     an additional _first_ parameter of this subroutine.(2)
+
+   * The Fortran routines expect multi-dimensional arrays to be in
+     _column-major_ order, which is the ordinary format of Fortran
+     arrays (*note Multi-dimensional Array Format::).  They do this
+     transparently and costlessly simply by reversing the order of the
+     dimensions passed to FFTW, but this has one important consequence
+     for multi-dimensional real-complex transforms, discussed below.
+
+   * Wisdom import and export is somewhat more tricky because one cannot
+     easily pass files or strings between C and Fortran; see *note
+     Wisdom of Fortran?::.
+
+   * Legacy Fortran cannot use the `fftw_malloc' dynamic-allocation
+     routine.  If you want to exploit the SIMD FFTW (*note SIMD
+     alignment and fftw_malloc::), you'll need to figure out some other
+     way to ensure that your arrays are at least 16-byte aligned.
+
+   * Since Fortran 77 does not have data structures, the `fftw_iodim'
+     structure from the guru interface (*note Guru vector and transform
+     sizes::) must be split into separate arguments.  In particular, any
+     `fftw_iodim' array arguments in the C guru interface become three
+     integer array arguments (`n', `is', and `os') in the Fortran guru
+     interface, all of whose lengths should be equal to the
+     corresponding `rank' argument.
+
+   * The guru planner interface in Fortran does _not_ do any automatic
+     translation between column-major and row-major; you are responsible
+     for setting the strides etcetera to correspond to your Fortran
+     arrays.  However, as a slight bug that we are preserving for
+     backwards compatibility, the `plan_guru_r2r' in Fortran _does_
+     reverse the order of its `kind' array parameter, so the `kind'
+     array of that routine should be in the reverse of the order of the
+     iodim arrays (see above).
+
+
+   In general, you should take care to use Fortran data types that
+correspond to (i.e. are the same size as) the C types used by FFTW.  In
+practice, this correspondence is usually straightforward (i.e.
+`integer' corresponds to `int', `real' corresponds to `float',
+etcetera).  The native Fortran double/single-precision complex type
+should be compatible with `fftw_complex'/`fftwf_complex'.  Such simple
+correspondences are assumed in the examples below.  
+
+   ---------- Footnotes ----------
+
+   (1) Technically, Fortran 77 identifiers are not allowed to have more
+than 6 characters, nor may they contain underscores.  Any compiler that
+enforces this limitation doesn't deserve to link to FFTW.
+
+   (2) The reason for this is that some Fortran implementations seem to
+have trouble with C function return values, and vice versa.
+
+\1f
+File: fftw3.info,  Node: FFTW Constants in Fortran,  Next: FFTW Execution in Fortran,  Prev: Fortran-interface routines,  Up: Calling FFTW from Legacy Fortran
+
+8.2 FFTW Constants in Fortran
+=============================
+
+When creating plans in FFTW, a number of constants are used to specify
+options, such as `FFTW_MEASURE' or `FFTW_ESTIMATE'.  The same constants
+must be used with the wrapper routines, but of course the C header
+files where the constants are defined can't be incorporated directly
+into Fortran code.
+
+   Instead, we have placed Fortran equivalents of the FFTW constant
+definitions in the file `fftw3.f', which can be found in the same
+directory as `fftw3.h'.  If your Fortran compiler supports a
+preprocessor of some sort, you should be able to `include' or
+`#include' this file; otherwise, you can paste it directly into your
+code.
+
+   In C, you combine different flags (like `FFTW_PRESERVE_INPUT' and
+`FFTW_MEASURE') using the ``|'' operator; in Fortran you should just
+use ``+''.  (Take care not to add in the same flag more than once,
+though.  Alternatively, you can use the `ior' intrinsic function
+standardized in Fortran 95.)
+
+\1f
+File: fftw3.info,  Node: FFTW Execution in Fortran,  Next: Fortran Examples,  Prev: FFTW Constants in Fortran,  Up: Calling FFTW from Legacy Fortran
+
+8.3 FFTW Execution in Fortran
+=============================
+
+In C, in order to use a plan, one normally calls `fftw_execute', which
+executes the plan to perform the transform on the input/output arrays
+passed when the plan was created (*note Using Plans::).  The
+corresponding subroutine call in legacy Fortran is:
+             call dfftw_execute(plan)
+   
+   However, we have had reports that this causes problems with some
+recent optimizing Fortran compilers.  The problem is, because the
+input/output arrays are not passed as explicit arguments to
+`dfftw_execute', the semantics of Fortran (unlike C) allow the compiler
+to assume that the input/output arrays are not changed by
+`dfftw_execute'.  As a consequence, certain compilers end up optimizing
+out or repositioning the call to `dfftw_execute', assuming incorrectly
+that it does nothing.
+
+   There are various workarounds to this, but the safest and simplest
+thing is to not use `dfftw_execute' in Fortran.  Instead, use the
+functions described in *note New-array Execute Functions::, which take
+the input/output arrays as explicit arguments.  For example, if the
+plan is for a complex-data DFT and was created for the arrays `in' and
+`out', you would do:
+             call dfftw_execute_dft(plan, in, out)
+   
+   There are a few things to be careful of, however:
+
+   * You must use the correct type of execute function, matching the way
+     the plan was created.  Complex DFT plans should use
+     `dfftw_execute_dft', Real-input (r2c) DFT plans should use use
+     `dfftw_execute_dft_r2c', and real-output (c2r) DFT plans should
+     use `dfftw_execute_dft_c2r'.  The various r2r plans should use
+     `dfftw_execute_r2r'.
+
+   * You should normally pass the same input/output arrays that were
+     used when creating the plan.  This is always safe.
+
+   * _If_ you pass _different_ input/output arrays compared to those
+     used when creating the plan, you must abide by all the
+     restrictions of the new-array execute functions (*note New-array
+     Execute Functions::).  The most difficult of these, in Fortran, is
+     the requirement that the new arrays have the same alignment as the
+     original arrays, because there seems to be no way in legacy
+     Fortran to obtain guaranteed-aligned arrays (analogous to
+     `fftw_malloc' in C).  You can, of course, use the `FFTW_UNALIGNED'
+     flag when creating the plan, in which case the plan does not
+     depend on the alignment, but this may sacrifice substantial
+     performance on architectures (like x86) with SIMD instructions
+     (*note SIMD alignment and fftw_malloc::).  
+
+
+\1f
+File: fftw3.info,  Node: Fortran Examples,  Next: Wisdom of Fortran?,  Prev: FFTW Execution in Fortran,  Up: Calling FFTW from Legacy Fortran
+
+8.4 Fortran Examples
+====================
+
+In C, you might have something like the following to transform a
+one-dimensional complex array:
+
+             fftw_complex in[N], out[N];
+             fftw_plan plan;
+
+             plan = fftw_plan_dft_1d(N,in,out,FFTW_FORWARD,FFTW_ESTIMATE);
+             fftw_execute(plan);
+             fftw_destroy_plan(plan);
+
+   In Fortran, you would use the following to accomplish the same thing:
+
+             double complex in, out
+             dimension in(N), out(N)
+             integer*8 plan
+
+             call dfftw_plan_dft_1d(plan,N,in,out,FFTW_FORWARD,FFTW_ESTIMATE)
+             call dfftw_execute_dft(plan, in, out)
+             call dfftw_destroy_plan(plan)
+   
+   Notice how all routines are called as Fortran subroutines, and the
+plan is returned via the first argument to `dfftw_plan_dft_1d'.  Notice
+also that we changed `fftw_execute' to `dfftw_execute_dft' (*note FFTW
+Execution in Fortran::).  To do the same thing, but using 8 threads in
+parallel (*note Multi-threaded FFTW::), you would simply prefix these
+calls with:
+
+             integer iret
+             call dfftw_init_threads(iret)
+             call dfftw_plan_with_nthreads(8)
+   
+   (You might want to check the value of `iret': if it is zero, it
+indicates an unlikely error during thread initialization.)
+
+   To transform a three-dimensional array in-place with C, you might do:
+
+             fftw_complex arr[L][M][N];
+             fftw_plan plan;
+
+             plan = fftw_plan_dft_3d(L,M,N, arr,arr,
+                                     FFTW_FORWARD, FFTW_ESTIMATE);
+             fftw_execute(plan);
+             fftw_destroy_plan(plan);
+
+   In Fortran, you would use this instead:
+
+             double complex arr
+             dimension arr(L,M,N)
+             integer*8 plan
+
+             call dfftw_plan_dft_3d(plan, L,M,N, arr,arr,
+            &                       FFTW_FORWARD, FFTW_ESTIMATE)
+             call dfftw_execute_dft(plan, arr, arr)
+             call dfftw_destroy_plan(plan)
+   
+   Note that we pass the array dimensions in the "natural" order in
+both C and Fortran.
+
+   To transform a one-dimensional real array in Fortran, you might do:
+
+             double precision in
+             dimension in(N)
+             double complex out
+             dimension out(N/2 + 1)
+             integer*8 plan
+
+             call dfftw_plan_dft_r2c_1d(plan,N,in,out,FFTW_ESTIMATE)
+             call dfftw_execute_dft_r2c(plan, in, out)
+             call dfftw_destroy_plan(plan)
+   
+   To transform a two-dimensional real array, out of place, you might
+use the following:
+
+             double precision in
+             dimension in(M,N)
+             double complex out
+             dimension out(M/2 + 1, N)
+             integer*8 plan
+
+             call dfftw_plan_dft_r2c_2d(plan,M,N,in,out,FFTW_ESTIMATE)
+             call dfftw_execute_dft_r2c(plan, in, out)
+             call dfftw_destroy_plan(plan)
+   
+   *Important:* Notice that it is the _first_ dimension of the complex
+output array that is cut in half in Fortran, rather than the last
+dimension as in C.  This is a consequence of the interface routines
+reversing the order of the array dimensions passed to FFTW so that the
+Fortran program can use its ordinary column-major order.  
+
+\1f
+File: fftw3.info,  Node: Wisdom of Fortran?,  Prev: Fortran Examples,  Up: Calling FFTW from Legacy Fortran
+
+8.5 Wisdom of Fortran?
+======================
+
+In this section, we discuss how one can import/export FFTW wisdom
+(saved plans) to/from a Fortran program; we assume that the reader is
+already familiar with wisdom, as described in *note Words of
+Wisdom-Saving Plans::.
+
+   The basic problem is that is difficult to (portably) pass files and
+strings between Fortran and C, so we cannot provide a direct Fortran
+equivalent to the `fftw_export_wisdom_to_file', etcetera, functions.
+Fortran interfaces _are_ provided for the functions that do not take
+file/string arguments, however: `dfftw_import_system_wisdom',
+`dfftw_import_wisdom', `dfftw_export_wisdom', and `dfftw_forget_wisdom'.  
+
+   So, for example, to import the system-wide wisdom, you would do:
+
+             integer isuccess
+             call dfftw_import_system_wisdom(isuccess)
+
+   As usual, the C return value is turned into a first parameter;
+`isuccess' is non-zero on success and zero on failure (e.g. if there is
+no system wisdom installed).
+
+   If you want to import/export wisdom from/to an arbitrary file or
+elsewhere, you can employ the generic `dfftw_import_wisdom' and
+`dfftw_export_wisdom' functions, for which you must supply a subroutine
+to read/write one character at a time.  The FFTW package contains an
+example file `doc/f77_wisdom.f' demonstrating how to implement
+`import_wisdom_from_file' and `export_wisdom_to_file' subroutines in
+this way.  (These routines cannot be compiled into the FFTW library
+itself, lest all FFTW-using programs be required to link with the
+Fortran I/O library.)
+
+\1f
+File: fftw3.info,  Node: Upgrading from FFTW version 2,  Next: Installation and Customization,  Prev: Calling FFTW from Legacy Fortran,  Up: Top
+
+9 Upgrading from FFTW version 2
+*******************************
+
+In this chapter, we outline the process for updating codes designed for
+the older FFTW 2 interface to work with FFTW 3.  The interface for FFTW
+3 is not backwards-compatible with the interface for FFTW 2 and earlier
+versions; codes written to use those versions will fail to link with
+FFTW 3.  Nor is it possible to write "compatibility wrappers" to bridge
+the gap (at least not efficiently), because FFTW 3 has different
+semantics from previous versions.  However, upgrading should be a
+straightforward process because the data formats are identical and the
+overall style of planning/execution is essentially the same.
+
+   Unlike FFTW 2, there are no separate header files for real and
+complex transforms (or even for different precisions) in FFTW 3; all
+interfaces are defined in the `<fftw3.h>' header file.
+
+Numeric Types
+=============
+
+The main difference in data types is that `fftw_complex' in FFTW 2 was
+defined as a `struct' with macros `c_re' and `c_im' for accessing the
+real/imaginary parts.  (This is binary-compatible with FFTW 3 on any
+machine except perhaps for some older Crays in single precision.)  The
+equivalent macros for FFTW 3 are:
+
+     #define c_re(c) ((c)[0])
+     #define c_im(c) ((c)[1])
+
+   This does not work if you are using the C99 complex type, however,
+unless you insert a `double*' typecast into the above macros (*note
+Complex numbers::).
+
+   Also, FFTW 2 had an `fftw_real' typedef that was an alias for
+`double' (in double precision).  In FFTW 3 you should just use `double'
+(or whatever precision you are employing).
+
+Plans
+=====
+
+The major difference between FFTW 2 and FFTW 3 is in the
+planning/execution division of labor.  In FFTW 2, plans were found for a
+given transform size and type, and then could be applied to _any_
+arrays and for _any_ multiplicity/stride parameters.  In FFTW 3, you
+specify the particular arrays, stride parameters, etcetera when
+creating the plan, and the plan is then executed for _those_ arrays
+(unless the guru interface is used) and _those_ parameters _only_.
+(FFTW 2 had "specific planner" routines that planned for a particular
+array and stride, but the plan could still be used for other arrays and
+strides.)  That is, much of the information that was formerly specified
+at execution time is now specified at planning time.
+
+   Like FFTW 2's specific planner routines, the FFTW 3 planner
+overwrites the input/output arrays unless you use `FFTW_ESTIMATE'.
+
+   FFTW 2 had separate data types `fftw_plan', `fftwnd_plan',
+`rfftw_plan', and `rfftwnd_plan' for complex and real one- and
+multi-dimensional transforms, and each type had its own `destroy'
+function.  In FFTW 3, all plans are of type `fftw_plan' and all are
+destroyed by `fftw_destroy_plan(plan)'.
+
+   Where you formerly used `fftw_create_plan' and `fftw_one' to plan
+and compute a single 1d transform, you would now use `fftw_plan_dft_1d'
+to plan the transform.  If you used the generic `fftw' function to
+execute the transform with multiplicity (`howmany') and stride
+parameters, you would now use the advanced interface
+`fftw_plan_many_dft' to specify those parameters.  The plans are now
+executed with `fftw_execute(plan)', which takes all of its parameters
+(including the input/output arrays) from the plan.
+
+   In-place transforms no longer interpret their output argument as
+scratch space, nor is there an `FFTW_IN_PLACE' flag.  You simply pass
+the same pointer for both the input and output arguments.  (Previously,
+the output `ostride' and `odist' parameters were ignored for in-place
+transforms; now, if they are specified via the advanced interface, they
+are significant even in the in-place case, although they should
+normally equal the corresponding input parameters.)
+
+   The `FFTW_ESTIMATE' and `FFTW_MEASURE' flags have the same meaning
+as before, although the planning time will differ.  You may also
+consider using `FFTW_PATIENT', which is like `FFTW_MEASURE' except that
+it takes more time in order to consider a wider variety of algorithms.
+
+   For multi-dimensional complex DFTs, instead of `fftwnd_create_plan'
+(or `fftw2d_create_plan' or `fftw3d_create_plan'), followed by
+`fftwnd_one', you would use `fftw_plan_dft' (or `fftw_plan_dft_2d' or
+`fftw_plan_dft_3d').  followed by `fftw_execute'.  If you used `fftwnd'
+to to specify strides etcetera, you would instead specify these via
+`fftw_plan_many_dft'.
+
+   The analogues to `rfftw_create_plan' and `rfftw_one' with
+`FFTW_REAL_TO_COMPLEX' or `FFTW_COMPLEX_TO_REAL' directions are
+`fftw_plan_r2r_1d' with kind `FFTW_R2HC' or `FFTW_HC2R', followed by
+`fftw_execute'.  The stride etcetera arguments of `rfftw' are now in
+`fftw_plan_many_r2r'.
+
+   Instead of `rfftwnd_create_plan' (or `rfftw2d_create_plan' or
+`rfftw3d_create_plan') followed by `rfftwnd_one_real_to_complex' or
+`rfftwnd_one_complex_to_real', you now use `fftw_plan_dft_r2c' (or
+`fftw_plan_dft_r2c_2d' or `fftw_plan_dft_r2c_3d') or
+`fftw_plan_dft_c2r' (or `fftw_plan_dft_c2r_2d' or
+`fftw_plan_dft_c2r_3d'), respectively, followed by `fftw_execute'.  As
+usual, the strides etcetera of `rfftwnd_real_to_complex' or
+`rfftwnd_complex_to_real' are no specified in the advanced planner
+routines, `fftw_plan_many_dft_r2c' or `fftw_plan_many_dft_c2r'.
+
+Wisdom
+======
+
+In FFTW 2, you had to supply the `FFTW_USE_WISDOM' flag in order to use
+wisdom; in FFTW 3, wisdom is always used.  (You could simulate the FFTW
+2 wisdom-less behavior by calling `fftw_forget_wisdom' after every
+planner call.)
+
+   The FFTW 3 wisdom import/export routines are almost the same as
+before (although the storage format is entirely different).  There is
+one significant difference, however.  In FFTW 2, the import routines
+would never read past the end of the wisdom, so you could store extra
+data beyond the wisdom in the same file, for example.  In FFTW 3, the
+file-import routine may read up to a few hundred bytes past the end of
+the wisdom, so you cannot store other data just beyond it.(1)
+
+   Wisdom has been enhanced by additional humility in FFTW 3: whereas
+FFTW 2 would re-use wisdom for a given transform size regardless of the
+stride etc., in FFTW 3 wisdom is only used with the strides etc. for
+which it was created.  Unfortunately, this means FFTW 3 has to create
+new plans from scratch more often than FFTW 2 (in FFTW 2, planning e.g.
+one transform of size 1024 also created wisdom for all smaller powers
+of 2, but this no longer occurs).
+
+   FFTW 3 also has the new routine `fftw_import_system_wisdom' to
+import wisdom from a standard system-wide location.
+
+Memory allocation
+=================
+
+In FFTW 3, we recommend allocating your arrays with `fftw_malloc' and
+deallocating them with `fftw_free'; this is not required, but allows
+optimal performance when SIMD acceleration is used.  (Those two
+functions actually existed in FFTW 2, and worked the same way, but were
+not documented.)
+
+   In FFTW 2, there were `fftw_malloc_hook' and `fftw_free_hook'
+functions that allowed the user to replace FFTW's memory-allocation
+routines (e.g. to implement different error-handling, since by default
+FFTW prints an error message and calls `exit' to abort the program if
+`malloc' returns `NULL').  These hooks are not supported in FFTW 3;
+those few users who require this functionality can just directly modify
+the memory-allocation routines in FFTW (they are defined in
+`kernel/alloc.c').
+
+Fortran interface
+=================
+
+In FFTW 2, the subroutine names were obtained by replacing `fftw_' with
+`fftw_f77'; in FFTW 3, you replace `fftw_' with `dfftw_' (or `sfftw_'
+or `lfftw_', depending upon the precision).
+
+   In FFTW 3, we have begun recommending that you always declare the
+type used to store plans as `integer*8'.  (Too many people didn't notice
+our instruction to switch from `integer' to `integer*8' for 64-bit
+machines.)
+
+   In FFTW 3, we provide a `fftw3.f' "header file" to include in your
+code (and which is officially installed on Unix systems).  (In FFTW 2,
+we supplied a `fftw_f77.i' file, but it was not installed.)
+
+   Otherwise, the C-Fortran interface relationship is much the same as
+it was before (e.g. return values become initial parameters, and
+multi-dimensional arrays are in column-major order).  Unlike FFTW 2, we
+do provide some support for wisdom import/export in Fortran (*note
+Wisdom of Fortran?::).
+
+Threads
+=======
+
+Like FFTW 2, only the execution routines are thread-safe.  All planner
+routines, etcetera, should be called by only a single thread at a time
+(*note Thread safety::).  _Unlike_ FFTW 2, there is no special
+`FFTW_THREADSAFE' flag for the planner to allow a given plan to be
+usable by multiple threads in parallel; this is now the case by default.
+
+   The multi-threaded version of FFTW 2 required you to pass the number
+of threads each time you execute the transform.  The number of threads
+is now stored in the plan, and is specified before the planner is
+called by `fftw_plan_with_nthreads'.  The threads initialization
+routine used to be called `fftw_threads_init' and would return zero on
+success; the new routine is called `fftw_init_threads' and returns zero
+on failure.  *Note Multi-threaded FFTW::.
+
+   There is no separate threads header file in FFTW 3; all the function
+prototypes are in `<fftw3.h>'.  However, you still have to link to a
+separate library (`-lfftw3_threads -lfftw3 -lm' on Unix), as well as to
+the threading library (e.g. POSIX threads on Unix).
+
+   ---------- Footnotes ----------
+
+   (1) We do our own buffering because GNU libc I/O routines are
+horribly slow for single-character I/O, apparently for thread-safety
+reasons (whether you are using threads or not).
+
+\1f
+File: fftw3.info,  Node: Installation and Customization,  Next: Acknowledgments,  Prev: Upgrading from FFTW version 2,  Up: Top
+
+10 Installation and Customization
+*********************************
+
+This chapter describes the installation and customization of FFTW, the
+latest version of which may be downloaded from the FFTW home page
+(http://www.fftw.org).
+
+   In principle, FFTW should work on any system with an ANSI C compiler
+(`gcc' is fine).  However, planner time is drastically reduced if FFTW
+can exploit a hardware cycle counter; FFTW comes with cycle-counter
+support for all modern general-purpose CPUs, but you may need to add a
+couple of lines of code if your compiler is not yet supported (*note
+Cycle Counters::).  (On Unix, there will be a warning at the end of the
+`configure' output if no cycle counter is found.)  
+
+   Installation of FFTW is simplest if you have a Unix or a GNU system,
+such as GNU/Linux, and we describe this case in the first section below,
+including the use of special configuration options to e.g. install
+different precisions or exploit optimizations for particular
+architectures (e.g. SIMD).  Compilation on non-Unix systems is a more
+manual process, but we outline the procedure in the second section.  It
+is also likely that pre-compiled binaries will be available for popular
+systems.
+
+   Finally, we describe how you can customize FFTW for particular needs
+by generating _codelets_ for fast transforms of sizes not supported
+efficiently by the standard FFTW distribution.  
+
+* Menu:
+
+* Installation on Unix::
+* Installation on non-Unix systems::
+* Cycle Counters::
+* Generating your own code::
+
+\1f
+File: fftw3.info,  Node: Installation on Unix,  Next: Installation on non-Unix systems,  Prev: Installation and Customization,  Up: Installation and Customization
+
+10.1 Installation on Unix
+=========================
+
+FFTW comes with a `configure' program in the GNU style.  Installation
+can be as simple as: 
+
+     ./configure
+     make
+     make install
+
+   This will build the uniprocessor complex and real transform libraries
+along with the test programs.  (We recommend that you use GNU `make' if
+it is available; on some systems it is called `gmake'.)  The "`make
+install'" command installs the fftw and rfftw libraries in standard
+places, and typically requires root privileges (unless you specify a
+different install directory with the `--prefix' flag to `configure').
+You can also type "`make check'" to put the FFTW test programs through
+their paces.  If you have problems during configuration or compilation,
+you may want to run "`make distclean'" before trying again; this
+ensures that you don't have any stale files left over from previous
+compilation attempts.
+
+   The `configure' script chooses the `gcc' compiler by default, if it
+is available; you can select some other compiler with:
+     ./configure CC="<the name of your C compiler>"
+
+   The `configure' script knows good `CFLAGS' (C compiler flags) for a
+few systems.  If your system is not known, the `configure' script will
+print out a warning.  In this case, you should re-configure FFTW with
+the command
+     ./configure CFLAGS="<write your CFLAGS here>"
+   and then compile as usual.  If you do find an optimal set of
+`CFLAGS' for your system, please let us know what they are (along with
+the output of `config.guess') so that we can include them in future
+releases.
+
+   `configure' supports all the standard flags defined by the GNU
+Coding Standards; see the `INSTALL' file in FFTW or the GNU web page
+(http://www.gnu.org/prep/standards/html_node/index.html).  Note
+especially `--help' to list all flags and `--enable-shared' to create
+shared, rather than static, libraries.  `configure' also accepts a few
+FFTW-specific flags, particularly:
+
+   * `--enable-float': Produces a single-precision version of FFTW
+     (`float') instead of the default double-precision (`double').
+     *Note Precision::.
+
+   * `--enable-long-double': Produces a long-double precision version of
+     FFTW (`long double') instead of the default double-precision
+     (`double').  The `configure' script will halt with an error
+     message if `long double' is the same size as `double' on your
+     machine/compiler.  *Note Precision::.
+
+   * `--enable-quad-precision': Produces a quadruple-precision version
+     of FFTW using the nonstandard `__float128' type provided by `gcc'
+     4.6 or later on x86, x86-64, and Itanium architectures, instead of
+     the default double-precision (`double').  The `configure' script
+     will halt with an error message if the compiler is not `gcc'
+     version 4.6 or later or if `gcc''s `libquadmath' library is not
+     installed.  *Note Precision::.
+
+   * `--enable-threads': Enables compilation and installation of the
+     FFTW threads library (*note Multi-threaded FFTW::), which provides
+     a simple interface to parallel transforms for SMP systems.  By
+     default, the threads routines are not compiled.
+
+   * `--enable-openmp': Like `--enable-threads', but using OpenMP
+     compiler directives in order to induce parallelism rather than
+     spawning its own threads directly, and installing an `fftw3_omp'
+     library rather than an `fftw3_threads' library (*note
+     Multi-threaded FFTW::).  You can use both `--enable-openmp' and
+     `--enable-threads' since they compile/install libraries with
+     different names.  By default, the OpenMP routines are not compiled.
+
+   * `--with-combined-threads': By default, if `--enable-threads' is
+     used, the threads support is compiled into a separate library that
+     must be linked in addition to the main FFTW library.  This is so
+     that users of the serial library do not need to link the system
+     threads libraries.  If `--with-combined-threads' is specified,
+     however, then no separate threads library is created, and threads
+     are included in the main FFTW library.  This is mainly useful
+     under Windows, where no system threads library is required and
+     inter-library dependencies are problematic.
+
+   * `--enable-mpi': Enables compilation and installation of the FFTW
+     MPI library (*note Distributed-memory FFTW with MPI::), which
+     provides parallel transforms for distributed-memory systems with
+     MPI.  (By default, the MPI routines are not compiled.)  *Note FFTW
+     MPI Installation::.
+
+   * `--disable-fortran': Disables inclusion of legacy-Fortran wrapper
+     routines (*note Calling FFTW from Legacy Fortran::) in the standard
+     FFTW libraries.  These wrapper routines increase the library size
+     by only a negligible amount, so they are included by default as
+     long as the `configure' script finds a Fortran compiler on your
+     system.  (To specify a particular Fortran compiler foo, pass
+     `F77='foo to `configure'.)
+
+   * `--with-g77-wrappers': By default, when Fortran wrappers are
+     included, the wrappers employ the linking conventions of the
+     Fortran compiler detected by the `configure' script.  If this
+     compiler is GNU `g77', however, then _two_ versions of the
+     wrappers are included: one with `g77''s idiosyncratic convention
+     of appending two underscores to identifiers, and one with the more
+     common convention of appending only a single underscore.  This
+     way, the same FFTW library will work with both `g77' and other
+     Fortran compilers, such as GNU `gfortran'.  However, the converse
+     is not true: if you configure with a different compiler, then the
+     `g77'-compatible wrappers are not included.  By specifying
+     `--with-g77-wrappers', the `g77'-compatible wrappers are included
+     in addition to wrappers for whatever Fortran compiler `configure'
+     finds.  
+
+   * `--with-slow-timer': Disables the use of hardware cycle counters,
+     and falls back on `gettimeofday' or `clock'.  This greatly worsens
+     performance, and should generally not be used (unless you don't
+     have a cycle counter but still really want an optimized plan
+     regardless of the time).  *Note Cycle Counters::.
+
+   * `--enable-sse', `--enable-sse2', `--enable-avx',
+     `--enable-altivec', `--enable-neon': Enable the compilation of
+     SIMD code for SSE (Pentium III+), SSE2 (Pentium IV+), AVX (Sandy
+     Bridge, Interlagos), AltiVec (PowerPC G4+), NEON (some ARM
+     processors).  SSE, AltiVec, and NEON only work with
+     `--enable-float' (above).  SSE2 works in both single and double
+     precision (and is simply SSE in single precision).  The resulting
+     code will _still work_ on earlier CPUs lacking the SIMD extensions
+     (SIMD is automatically disabled, although the FFTW library is
+     still larger).
+        - These options require a compiler supporting SIMD extensions,
+          and compiler support is always a bit flaky: see the FFTW FAQ
+          for a list of compiler versions that have problems compiling
+          FFTW.
+
+        - With AltiVec and `gcc', you may have to use the
+          `-mabi=altivec' option when compiling any code that links to
+          FFTW, in order to properly align the stack; otherwise, FFTW
+          could crash when it tries to use an AltiVec feature.  (This
+          is not necessary on MacOS X.)
+
+        - With SSE/SSE2 and `gcc', you should use a version of gcc that
+          properly aligns the stack when compiling any code that links
+          to FFTW.  By default, `gcc' 2.95 and later versions align the
+          stack as needed, but you should not compile FFTW with the
+          `-Os' option or the `-mpreferred-stack-boundary' option with
+          an argument less than 4.
+
+        - Because of the large variety of ARM processors and ABIs, FFTW
+          does not attempt to guess the correct `gcc' flags for
+          generating NEON code.  In general, you will have to provide
+          them on the command line.  This command line is known to have
+          worked at least once:
+               ./configure --with-slow-timer --host=arm-linux-gnueabi \
+                 --enable-single --enable-neon \
+                 "CC=arm-linux-gnueabi-gcc -march=armv7-a -mfloat-abi=softfp"
+
+
+   To force `configure' to use a particular C compiler foo (instead of
+the default, usually `gcc'), pass `CC='foo to the `configure' script;
+you may also need to set the flags via the variable `CFLAGS' as
+described above.  
+
+\1f
+File: fftw3.info,  Node: Installation on non-Unix systems,  Next: Cycle Counters,  Prev: Installation on Unix,  Up: Installation and Customization
+
+10.2 Installation on non-Unix systems
+=====================================
+
+It should be relatively straightforward to compile FFTW even on non-Unix
+systems lacking the niceties of a `configure' script.  Basically, you
+need to edit the `config.h' header (copy it from `config.h.in') to
+`#define' the various options and compiler characteristics, and then
+compile all the `.c' files in the relevant directories.
+
+   The `config.h' header contains about 100 options to set, each one
+initially an `#undef', each documented with a comment, and most of them
+fairly obvious.  For most of the options, you should simply `#define'
+them to `1' if they are applicable, although a few options require a
+particular value (e.g. `SIZEOF_LONG_LONG' should be defined to the size
+of the `long long' type, in bytes, or zero if it is not supported).  We
+will likely post some sample `config.h' files for various operating
+systems and compilers for you to use (at least as a starting point).
+Please let us know if you have to hand-create a configuration file
+(and/or a pre-compiled binary) that you want to share.
+
+   To create the FFTW library, you will then need to compile all of the
+`.c' files in the `kernel', `dft', `dft/scalar', `dft/scalar/codelets',
+`rdft', `rdft/scalar', `rdft/scalar/r2cf', `rdft/scalar/r2cb',
+`rdft/scalar/r2r', `reodft', and `api' directories.  If you are
+compiling with SIMD support (e.g. you defined `HAVE_SSE2' in
+`config.h'), then you also need to compile the `.c' files in the
+`simd-support', `{dft,rdft}/simd', `{dft,rdft}/simd/*' directories.
+
+   Once these files are all compiled, link them into a library, or a
+shared library, or directly into your program.
+
+   To compile the FFTW test program, additionally compile the code in
+the `libbench2/' directory, and link it into a library.  Then compile
+the code in the `tests/' directory and link it to the `libbench2' and
+FFTW libraries.  To compile the `fftw-wisdom' (command-line) tool
+(*note Wisdom Utilities::), compile `tools/fftw-wisdom.c' and link it
+to the `libbench2' and FFTW libraries
+
+\1f
+File: fftw3.info,  Node: Cycle Counters,  Next: Generating your own code,  Prev: Installation on non-Unix systems,  Up: Installation and Customization
+
+10.3 Cycle Counters
+===================
+
+FFTW's planner actually executes and times different possible FFT
+algorithms in order to pick the fastest plan for a given n.  In order
+to do this in as short a time as possible, however, the timer must have
+a very high resolution, and to accomplish this we employ the hardware
+"cycle counters" that are available on most CPUs.  Currently, FFTW
+supports the cycle counters on x86, PowerPC/POWER, Alpha, UltraSPARC
+(SPARC v9), IA64, PA-RISC, and MIPS processors.
+
+   Access to the cycle counters, unfortunately, is a compiler and/or
+operating-system dependent task, often requiring inline assembly
+language, and it may be that your compiler is not supported.  If you are
+_not_ supported, FFTW will by default fall back on its estimator
+(effectively using `FFTW_ESTIMATE' for all plans).  
+
+   You can add support by editing the file `kernel/cycle.h'; normally,
+this will involve adapting one of the examples already present in order
+to use the inline-assembler syntax for your C compiler, and will only
+require a couple of lines of code.  Anyone adding support for a new
+system to `cycle.h' is encouraged to email us at <fftw@fftw.org>.
+
+   If a cycle counter is not available on your system (e.g. some
+embedded processor), and you don't want to use estimated plans, as a
+last resort you can use the `--with-slow-timer' option to `configure'
+(on Unix) or `#define WITH_SLOW_TIMER' in `config.h' (elsewhere).  This
+will use the much lower-resolution `gettimeofday' function, or even
+`clock' if the former is unavailable, and planning will be extremely
+slow.
+
+\1f
+File: fftw3.info,  Node: Generating your own code,  Prev: Cycle Counters,  Up: Installation and Customization
+
+10.4 Generating your own code
+=============================
+
+The directory `genfft' contains the programs that were used to generate
+FFTW's "codelets," which are hard-coded transforms of small sizes.  We
+do not expect casual users to employ the generator, which is a rather
+sophisticated program that generates directed acyclic graphs of FFT
+algorithms and performs algebraic simplifications on them.  It was
+written in Objective Caml, a dialect of ML, which is available at
+`http://caml.inria.fr/ocaml/index.en.html'.  
+
+   If you have Objective Caml installed (along with recent versions of
+GNU `autoconf', `automake', and `libtool'), then you can change the set
+of codelets that are generated or play with the generation options.
+The set of generated codelets is specified by the
+`{dft,rdft}/{codelets,simd}/*/Makefile.am' files.  For example, you can
+add efficient REDFT codelets of small sizes by modifying
+`rdft/codelets/r2r/Makefile.am'.  After you modify any `Makefile.am'
+files, you can type `sh bootstrap.sh' in the top-level directory
+followed by `make' to re-generate the files.
+
+   We do not provide more details about the code-generation process,
+since we do not expect that most users will need to generate their own
+code.  However, feel free to contact us at <fftw@fftw.org> if you are
+interested in the subject.
+
+   You might find it interesting to learn Caml and/or some modern
+programming techniques that we used in the generator (including monadic
+programming), especially if you heard the rumor that Java and
+object-oriented programming are the latest advancement in the field.
+The internal operation of the codelet generator is described in the
+paper, "A Fast Fourier Transform Compiler," by M. Frigo, which is
+available from the FFTW home page (http://www.fftw.org) and also
+appeared in the `Proceedings of the 1999 ACM SIGPLAN Conference on
+Programming Language Design and Implementation (PLDI)'.
+
+\1f
+File: fftw3.info,  Node: Acknowledgments,  Next: License and Copyright,  Prev: Installation and Customization,  Up: Top
+
+11 Acknowledgments
+******************
+
+Matteo Frigo was supported in part by the Special Research Program SFB
+F011 "AURORA" of the Austrian Science Fund FWF and by MIT Lincoln
+Laboratory.  For previous versions of FFTW, he was supported in part by
+the Defense Advanced Research Projects Agency (DARPA), under Grants
+N00014-94-1-0985 and F30602-97-1-0270, and by a Digital Equipment
+Corporation Fellowship.
+
+   Steven G. Johnson was supported in part by a Dept. of Defense NDSEG
+Fellowship, an MIT Karl Taylor Compton Fellowship, and by the Materials
+Research Science and Engineering Center program of the National Science
+Foundation under award DMR-9400334.
+
+   Code for the Cell Broadband Engine was graciously donated to the FFTW
+project by the IBM Austin Research Lab and included in fftw-3.2.  (This
+code was removed in fftw-3.3.)
+
+   Code for the MIPS paired-single SIMD support was graciously donated
+to the FFTW project by CodeSourcery, Inc.
+
+   We are grateful to Sun Microsystems Inc. for its donation of a
+cluster of 9 8-processor Ultra HPC 5000 SMPs (24 Gflops peak). These
+machines served as the primary platform for the development of early
+versions of FFTW.
+
+   We thank Intel Corporation for donating a four-processor Pentium Pro
+machine.  We thank the GNU/Linux community for giving us a decent OS to
+run on that machine.
+
+   We are thankful to the AMD corporation for donating an AMD Athlon XP
+1700+ computer to the FFTW project.
+
+   We thank the Compaq/HP testdrive program and VA Software Corporation
+(SourceForge.net) for providing remote access to machines that were used
+to test FFTW.
+
+   The `genfft' suite of code generators was written using Objective
+Caml, a dialect of ML.  Objective Caml is a small and elegant language
+developed by Xavier Leroy.  The implementation is available from
+`http://caml.inria.fr/' (http://caml.inria.fr/).  In previous releases
+of FFTW, `genfft' was written in Caml Light, by the same authors.  An
+even earlier implementation of `genfft' was written in Scheme, but Caml
+is definitely better for this kind of application.  
+
+   FFTW uses many tools from the GNU project, including `automake',
+`texinfo', and `libtool'.
+
+   Prof. Charles E. Leiserson of MIT provided continuous support and
+encouragement.  This program would not exist without him.  Charles also
+proposed the name "codelets" for the basic FFT blocks.  
+
+   Prof. John D. Joannopoulos of MIT demonstrated continuing tolerance
+of Steven's "extra-curricular" computer-science activities, as well as
+remarkable creativity in working them into his grant proposals.
+Steven's physics degree would not exist without him.
+
+   Franz Franchetti wrote SIMD extensions to FFTW 2, which eventually
+led to the SIMD support in FFTW 3.
+
+   Stefan Kral wrote most of the K7 code generator distributed with FFTW
+3.0.x and 3.1.x.
+
+   Andrew Sterian contributed the Windows timing code in FFTW 2.
+
+   Didier Miras reported a bug in the test procedure used in FFTW 1.2.
+We now use a completely different test algorithm by Funda Ergun that
+does not require a separate FFT program to compare against.
+
+   Wolfgang Reimer contributed the Pentium cycle counter and a few fixes
+that help portability.
+
+   Ming-Chang Liu uncovered a well-hidden bug in the complex transforms
+of FFTW 2.0 and supplied a patch to correct it.
+
+   The FFTW FAQ was written in `bfnn' (Bizarre Format With No Name) and
+formatted using the tools developed by Ian Jackson for the Linux FAQ.
+
+   _We are especially thankful to all of our users for their continuing
+support, feedback, and interest during our development of FFTW._
+
+\1f
+File: fftw3.info,  Node: License and Copyright,  Next: Concept Index,  Prev: Acknowledgments,  Up: Top
+
+12 License and Copyright
+************************
+
+FFTW is Copyright (C) 2003, 2007-11 Matteo Frigo, Copyright (C) 2003,
+2007-11 Massachusetts Institute of Technology.
+
+   FFTW is free software; you can redistribute it and/or modify it
+under the terms of the GNU General Public License as published by the
+Free Software Foundation; either version 2 of the License, or (at your
+option) any later version.
+
+   This program is distributed in the hope that it will be useful, but
+WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+General Public License for more details.
+
+   You should have received a copy of the GNU General Public License
+along with this program; if not, write to the Free Software Foundation,
+Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA You
+can also find the GPL on the GNU web site
+(http://www.gnu.org/licenses/gpl-2.0.html).
+
+   In addition, we kindly ask you to acknowledge FFTW and its authors in
+any program or publication in which you use FFTW.  (You are not
+_required_ to do so; it is up to your common sense to decide whether
+you want to comply with this request or not.)  For general
+publications, we suggest referencing: Matteo Frigo and Steven G.
+Johnson, "The design and implementation of FFTW3," Proc. IEEE 93 (2),
+216-231 (2005).
+
+   Non-free versions of FFTW are available under terms different from
+those of the General Public License. (e.g. they do not require you to
+accompany any object code using FFTW with the corresponding source
+code.)  For these alternative terms you must purchase a license from
+MIT's Technology Licensing Office.  Users interested in such a license
+should contact us (<fftw@fftw.org>) for more information.
+

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@@ -0,0 +1,630 @@
+This is gsl-ref.info, produced by makeinfo version 4.13 from
+gsl-ref.texi.
+
+INFO-DIR-SECTION Software libraries
+START-INFO-DIR-ENTRY
+* gsl-ref: (gsl-ref).                   GNU Scientific Library - Reference
+END-INFO-DIR-ENTRY
+
+   Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004,
+2005, 2006, 2007, 2008, 2009, 2010, 2011 The GSL Team.
+
+   Permission is granted to copy, distribute and/or modify this document
+under the terms of the GNU Free Documentation License, Version 1.3 or
+any later version published by the Free Software Foundation; with the
+Invariant Sections being "GNU General Public License" and "Free Software
+Needs Free Documentation", the Front-Cover text being "A GNU Manual",
+and with the Back-Cover Text being (a) (see below).  A copy of the
+license is included in the section entitled "GNU Free Documentation
+License".
+
+   (a) The Back-Cover Text is: "You have the freedom to copy and modify
+this GNU Manual."
+
+\1f
+Indirect:
+gsl-ref.info-1: 948
+gsl-ref.info-2: 300146
+gsl-ref.info-3: 598317
+gsl-ref.info-4: 898064
+gsl-ref.info-5: 1168153
+gsl-ref.info-6: 1435602
+\1f
+Tag Table:
+(Indirect)
+Node: Top\7f948
+Node: Introduction\7f3679
+Node: Routines available in GSL\7f4331
+Node: GSL is Free Software\7f6246
+Node: Obtaining GSL\7f8638
+Node: No Warranty\7f9665
+Node: Reporting Bugs\7f10171
+Ref: Reporting Bugs-Footnote-1\7f11127
+Node: Further Information\7f11177
+Node: Conventions used in this manual\7f12190
+Node: Using the library\7f12954
+Node: An Example Program\7f13540
+Ref: An Example Program-Footnote-1\7f14283
+Node: Compiling and Linking\7f14390
+Node: Linking programs with the library\7f15460
+Ref: Linking programs with the library-Footnote-1\7f16862
+Ref: Linking programs with the library-Footnote-2\7f16899
+Node: Linking with an alternative BLAS library\7f16952
+Node: Shared Libraries\7f18034
+Ref: Shared Libraries-Footnote-1\7f19509
+Node: ANSI C Compliance\7f19557
+Node: Inline functions\7f20650
+Node: Long double\7f22188
+Node: Portability functions\7f23776
+Node: Alternative optimized functions\7f25173
+Node: Support for different numeric types\7f26631
+Node: Compatibility with C++\7f29694
+Node: Aliasing of arrays\7f30266
+Node: Thread-safety\7f31017
+Node: Deprecated Functions\7f32104
+Node: Code Reuse\7f32729
+Node: Error Handling\7f33373
+Node: Error Reporting\7f34123
+Node: Error Codes\7f36015
+Node: Error Handlers\7f37871
+Node: Using GSL error reporting in your own functions\7f41508
+Node: Error Reporting Examples\7f43466
+Node: Mathematical Functions\7f44678
+Node: Mathematical Constants\7f45439
+Node: Infinities and Not-a-number\7f46569
+Ref: Infinities and Not-a-number-Footnote-1\7f47676
+Node: Elementary Functions\7f48086
+Node: Small integer powers\7f50533
+Node: Testing the Sign of Numbers\7f52180
+Node: Testing for Odd and Even Numbers\7f52611
+Node: Maximum and Minimum functions\7f53167
+Node: Approximate Comparison of Floating Point Numbers\7f55442
+Node: Complex Numbers\7f56801
+Ref: Complex Numbers-Footnote-1\7f58127
+Node: Representation of complex numbers\7f58191
+Node: Properties of complex numbers\7f60128
+Node: Complex arithmetic operators\7f61133
+Node: Elementary Complex Functions\7f63879
+Node: Complex Trigonometric Functions\7f65699
+Node: Inverse Complex Trigonometric Functions\7f66920
+Node: Complex Hyperbolic Functions\7f69526
+Node: Inverse Complex Hyperbolic Functions\7f70822
+Node: Complex Number References and Further Reading\7f72810
+Node: Polynomials\7f74206
+Node: Polynomial Evaluation\7f74973
+Node: Divided Difference Representation of Polynomials\7f76383
+Node: Quadratic Equations\7f78132
+Node: Cubic Equations\7f80072
+Node: General Polynomial Equations\7f81654
+Node: Roots of Polynomials Examples\7f83999
+Node: Roots of Polynomials References and Further Reading\7f85388
+Node: Special Functions\7f86333
+Node: Special Function Usage\7f88327
+Node: The gsl_sf_result struct\7f89510
+Node: Special Function Modes\7f90774
+Node: Airy Functions and Derivatives\7f91710
+Node: Airy Functions\7f92411
+Node: Derivatives of Airy Functions\7f93771
+Node: Zeros of Airy Functions\7f95283
+Node: Zeros of Derivatives of Airy Functions\7f96002
+Node: Bessel Functions\7f96761
+Node: Regular Cylindrical Bessel Functions\7f97953
+Node: Irregular Cylindrical Bessel Functions\7f99277
+Node: Regular Modified Cylindrical Bessel Functions\7f100735
+Node: Irregular Modified Cylindrical Bessel Functions\7f103562
+Node: Regular Spherical Bessel Functions\7f106530
+Node: Irregular Spherical Bessel Functions\7f108744
+Node: Regular Modified Spherical Bessel Functions\7f110431
+Node: Irregular Modified Spherical Bessel Functions\7f112434
+Node: Regular Bessel Function - Fractional Order\7f114497
+Node: Irregular Bessel Functions - Fractional Order\7f115495
+Node: Regular Modified Bessel Functions - Fractional Order\7f116077
+Node: Irregular Modified Bessel Functions - Fractional Order\7f117002
+Node: Zeros of Regular Bessel Functions\7f118238
+Node: Clausen Functions\7f119341
+Node: Coulomb Functions\7f119945
+Node: Normalized Hydrogenic Bound States\7f120394
+Node: Coulomb Wave Functions\7f121507
+Node: Coulomb Wave Function Normalization Constant\7f124917
+Node: Coupling Coefficients\7f125670
+Node: 3-j Symbols\7f126393
+Node: 6-j Symbols\7f126997
+Node: 9-j Symbols\7f127621
+Node: Dawson Function\7f128327
+Node: Debye Functions\7f128894
+Node: Dilogarithm\7f130668
+Node: Real Argument\7f130963
+Node: Complex Argument\7f131656
+Node: Elementary Operations\7f132125
+Node: Elliptic Integrals\7f132949
+Node: Definition of Legendre Forms\7f133521
+Node: Definition of Carlson Forms\7f134341
+Node: Legendre Form of Complete Elliptic Integrals\7f135038
+Node: Legendre Form of Incomplete Elliptic Integrals\7f136606
+Node: Carlson Forms\7f138794
+Node: Elliptic Functions (Jacobi)\7f140341
+Node: Error Functions\7f140922
+Node: Error Function\7f141373
+Node: Complementary Error Function\7f141746
+Node: Log Complementary Error Function\7f142206
+Node: Probability functions\7f142658
+Node: Exponential Functions\7f143911
+Node: Exponential Function\7f144294
+Node: Relative Exponential Functions\7f145517
+Node: Exponentiation With Error Estimate\7f147189
+Node: Exponential Integrals\7f148398
+Node: Exponential Integral\7f148880
+Node: Ei(x)\7f149807
+Node: Hyperbolic Integrals\7f150255
+Node: Ei_3(x)\7f150911
+Node: Trigonometric Integrals\7f151303
+Node: Arctangent Integral\7f151902
+Node: Fermi-Dirac Function\7f152302
+Node: Complete Fermi-Dirac Integrals\7f152672
+Node: Incomplete Fermi-Dirac Integrals\7f155240
+Node: Gamma and Beta Functions\7f155883
+Node: Gamma Functions\7f156456
+Node: Factorials\7f159565
+Node: Pochhammer Symbol\7f162118
+Node: Incomplete Gamma Functions\7f163624
+Node: Beta Functions\7f164873
+Node: Incomplete Beta Function\7f165625
+Node: Gegenbauer Functions\7f166336
+Node: Hypergeometric Functions\7f167986
+Node: Laguerre Functions\7f172249
+Node: Lambert W Functions\7f173812
+Node: Legendre Functions and Spherical Harmonics\7f174850
+Node: Legendre Polynomials\7f175439
+Node: Associated Legendre Polynomials and Spherical Harmonics\7f177494
+Node: Conical Functions\7f180327
+Node: Radial Functions for Hyperbolic Space\7f182450
+Node: Logarithm and Related Functions\7f184627
+Node: Mathieu Functions\7f186251
+Node: Mathieu Function Workspace\7f187600
+Node: Mathieu Function Characteristic Values\7f188414
+Node: Angular Mathieu Functions\7f189486
+Node: Radial Mathieu Functions\7f190522
+Node: Power Function\7f191764
+Node: Psi (Digamma) Function\7f192691
+Node: Digamma Function\7f193211
+Node: Trigamma Function\7f194041
+Node: Polygamma Function\7f194618
+Node: Synchrotron Functions\7f195002
+Node: Transport Functions\7f195765
+Node: Trigonometric Functions\7f196912
+Node: Circular Trigonometric Functions\7f197535
+Node: Trigonometric Functions for Complex Arguments\7f198544
+Node: Hyperbolic Trigonometric Functions\7f199580
+Node: Conversion Functions\7f200183
+Node: Restriction Functions\7f200966
+Node: Trigonometric Functions With Error Estimates\7f201898
+Node: Zeta Functions\7f202808
+Node: Riemann Zeta Function\7f203266
+Node: Riemann Zeta Function Minus One\7f203945
+Node: Hurwitz Zeta Function\7f204716
+Node: Eta Function\7f205221
+Node: Special Functions Examples\7f205780
+Node: Special Functions References and Further Reading\7f207474
+Node: Vectors and Matrices\7f208744
+Node: Data types\7f209503
+Node: Blocks\7f210706
+Node: Block allocation\7f211622
+Node: Reading and writing blocks\7f213106
+Node: Example programs for blocks\7f215170
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+Node: Vector allocation\7f217683
+Node: Accessing vector elements\7f219301
+Ref: Accessing vector elements-Footnote-1\7f222443
+Node: Initializing vector elements\7f222682
+Node: Reading and writing vectors\7f223376
+Node: Vector views\7f225466
+Node: Copying vectors\7f232908
+Node: Exchanging elements\7f233768
+Node: Vector operations\7f234326
+Node: Finding maximum and minimum elements of vectors\7f236092
+Node: Vector properties\7f237678
+Node: Example programs for vectors\7f238652
+Node: Matrices\7f240941
+Node: Matrix allocation\7f243799
+Node: Accessing matrix elements\7f245466
+Node: Initializing matrix elements\7f247415
+Node: Reading and writing matrices\7f248211
+Node: Matrix views\7f250314
+Node: Creating row and column views\7f257454
+Node: Copying matrices\7f261924
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+Node: Exchanging rows and columns\7f264197
+Node: Matrix operations\7f265675
+Node: Finding maximum and minimum elements of matrices\7f267642
+Node: Matrix properties\7f269546
+Node: Example programs for matrices\7f270648
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+Node: Permutations\7f275205
+Node: The Permutation struct\7f276493
+Node: Permutation allocation\7f276997
+Node: Accessing permutation elements\7f278431
+Node: Permutation properties\7f279274
+Node: Permutation functions\7f279979
+Node: Applying Permutations\7f281236
+Node: Reading and writing permutations\7f283162
+Ref: Reading and writing permutations-Footnote-1\7f285377
+Node: Permutations in cyclic form\7f285489
+Node: Permutation Examples\7f288914
+Node: Permutation References and Further Reading\7f291457
+Node: Combinations\7f292131
+Node: The Combination struct\7f292978
+Node: Combination allocation\7f293530
+Node: Accessing combination elements\7f295315
+Node: Combination properties\7f295974
+Node: Combination functions\7f296860
+Node: Reading and writing combinations\7f297800
+Ref: Reading and writing combinations-Footnote-1\7f300034
+Node: Combination Examples\7f300146
+Node: Combination References and Further Reading\7f301454
+Node: Multisets\7f301858
+Node: The Multiset struct\7f302784
+Node: Multiset allocation\7f303306
+Node: Accessing multiset elements\7f304997
+Node: Multiset properties\7f305626
+Node: Multiset functions\7f306439
+Node: Reading and writing multisets\7f307349
+Ref: Reading and writing multisets-Footnote-1\7f309500
+Node: Multiset Examples\7f309612
+Node: Sorting\7f311720
+Node: Sorting objects\7f312667
+Node: Sorting vectors\7f315578
+Node: Selecting the k smallest or largest elements\7f318154
+Node: Computing the rank\7f321488
+Node: Sorting Examples\7f322689
+Node: Sorting References and Further Reading\7f324333
+Node: BLAS Support\7f324879
+Ref: BLAS Support-Footnote-1\7f328254
+Node: GSL BLAS Interface\7f328422
+Node: Level 1 GSL BLAS Interface\7f328909
+Node: Level 2 GSL BLAS Interface\7f335648
+Node: Level 3 GSL BLAS Interface\7f344944
+Node: BLAS Examples\7f356084
+Node: BLAS References and Further Reading\7f357505
+Node: Linear Algebra\7f358852
+Node: LU Decomposition\7f359977
+Node: QR Decomposition\7f365222
+Node: QR Decomposition with Column Pivoting\7f371531
+Node: Singular Value Decomposition\7f375986
+Node: Cholesky Decomposition\7f379982
+Node: Tridiagonal Decomposition of Real Symmetric Matrices\7f383222
+Node: Tridiagonal Decomposition of Hermitian Matrices\7f385070
+Node: Hessenberg Decomposition of Real Matrices\7f387022
+Node: Hessenberg-Triangular Decomposition of Real Matrices\7f389432
+Node: Bidiagonalization\7f390552
+Node: Householder Transformations\7f392977
+Node: Householder solver for linear systems\7f395329
+Node: Tridiagonal Systems\7f396234
+Node: Balancing\7f399106
+Node: Linear Algebra Examples\7f399907
+Node: Linear Algebra References and Further Reading\7f401895
+Node: Eigensystems\7f403542
+Node: Real Symmetric Matrices\7f404756
+Node: Complex Hermitian Matrices\7f407270
+Node: Real Nonsymmetric Matrices\7f409897
+Node: Real Generalized Symmetric-Definite Eigensystems\7f415610
+Node: Complex Generalized Hermitian-Definite Eigensystems\7f418482
+Node: Real Generalized Nonsymmetric Eigensystems\7f421189
+Node: Sorting Eigenvalues and Eigenvectors\7f427773
+Node: Eigenvalue and Eigenvector Examples\7f431050
+Node: Eigenvalue and Eigenvector References\7f436440
+Node: Fast Fourier Transforms\7f437465
+Node: Mathematical Definitions\7f438674
+Node: Overview of complex data FFTs\7f441079
+Node: Radix-2 FFT routines for complex data\7f444022
+Node: Mixed-radix FFT routines for complex data\7f448234
+Node: Overview of real data FFTs\7f457563
+Node: Radix-2 FFT routines for real data\7f459997
+Node: Mixed-radix FFT routines for real data\7f464426
+Node: FFT References and Further Reading\7f475100
+Node: Numerical Integration\7f477969
+Node: Numerical Integration Introduction\7f479735
+Node: Integrands without weight functions\7f482004
+Node: Integrands with weight functions\7f482833
+Node: Integrands with singular weight functions\7f483544
+Node: QNG non-adaptive Gauss-Kronrod integration\7f484462
+Node: QAG adaptive integration\7f485743
+Node: QAGS adaptive integration with singularities\7f488374
+Node: QAGP adaptive integration with known singular points\7f490174
+Node: QAGI adaptive integration on infinite intervals\7f491488
+Node: QAWC adaptive integration for Cauchy principal values\7f493781
+Node: QAWS adaptive integration for singular functions\7f494956
+Node: QAWO adaptive integration for oscillatory functions\7f498178
+Node: QAWF adaptive integration for Fourier integrals\7f501957
+Node: CQUAD doubly-adaptive integration\7f504582
+Node: Fixed order Gauss-Legendre integration\7f507819
+Node: Numerical integration error codes\7f509797
+Node: Numerical integration examples\7f510556
+Node: Numerical integration References and Further Reading\7f512602
+Node: Random Number Generation\7f513593
+Node: General comments on random numbers\7f515095
+Node: The Random Number Generator Interface\7f517045
+Node: Random number generator initialization\7f518403
+Node: Sampling from a random number generator\7f520776
+Node: Auxiliary random number generator functions\7f524017
+Node: Random number environment variables\7f526337
+Node: Copying random number generator state\7f528863
+Node: Reading and writing random number generator state\7f529838
+Node: Random number generator algorithms\7f531232
+Node: Unix random number generators\7f541167
+Node: Other random number generators\7f544885
+Node: Random Number Generator Performance\7f553519
+Node: Random Number Generator Examples\7f554640
+Node: Random Number References and Further Reading\7f556196
+Node: Random Number Acknowledgements\7f557493
+Node: Quasi-Random Sequences\7f557979
+Node: Quasi-random number generator initialization\7f559086
+Node: Sampling from a quasi-random number generator\7f560101
+Node: Auxiliary quasi-random number generator functions\7f560798
+Node: Saving and resorting quasi-random number generator state\7f561744
+Node: Quasi-random number generator algorithms\7f562552
+Node: Quasi-random number generator examples\7f563688
+Node: Quasi-random number references\7f564673
+Node: Random Number Distributions\7f565199
+Node: Random Number Distribution Introduction\7f568398
+Node: The Gaussian Distribution\7f570193
+Node: The Gaussian Tail Distribution\7f572854
+Node: The Bivariate Gaussian Distribution\7f574523
+Node: The Exponential Distribution\7f575846
+Node: The Laplace Distribution\7f576985
+Node: The Exponential Power Distribution\7f578082
+Node: The Cauchy Distribution\7f579350
+Node: The Rayleigh Distribution\7f580599
+Node: The Rayleigh Tail Distribution\7f581771
+Node: The Landau Distribution\7f582643
+Node: The Levy alpha-Stable Distributions\7f583598
+Node: The Levy skew alpha-Stable Distribution\7f584656
+Node: The Gamma Distribution\7f586268
+Node: The Flat (Uniform) Distribution\7f587925
+Node: The Lognormal Distribution\7f589077
+Node: The Chi-squared Distribution\7f590425
+Node: The F-distribution\7f591829
+Node: The t-distribution\7f593465
+Node: The Beta Distribution\7f594859
+Node: The Logistic Distribution\7f596018
+Node: The Pareto Distribution\7f597147
+Node: Spherical Vector Distributions\7f598317
+Node: The Weibull Distribution\7f601151
+Node: The Type-1 Gumbel Distribution\7f602345
+Node: The Type-2 Gumbel Distribution\7f603582
+Node: The Dirichlet Distribution\7f604813
+Node: General Discrete Distributions\7f606480
+Node: The Poisson Distribution\7f610347
+Node: The Bernoulli Distribution\7f611355
+Node: The Binomial Distribution\7f612106
+Node: The Multinomial Distribution\7f613311
+Node: The Negative Binomial Distribution\7f615080
+Node: The Pascal Distribution\7f616445
+Node: The Geometric Distribution\7f617603
+Node: The Hypergeometric Distribution\7f618851
+Node: The Logarithmic Distribution\7f620504
+Node: Shuffling and Sampling\7f621295
+Node: Random Number Distribution Examples\7f624114
+Node: Random Number Distribution References and Further Reading\7f627310
+Node: Statistics\7f629453
+Node: Mean and standard deviation and variance\7f630853
+Node: Absolute deviation\7f634361
+Node: Higher moments (skewness and kurtosis)\7f635653
+Node: Autocorrelation\7f637786
+Node: Covariance\7f638600
+Node: Correlation\7f639576
+Node: Weighted Samples\7f640285
+Node: Maximum and Minimum values\7f646135
+Node: Median and Percentiles\7f648874
+Node: Example statistical programs\7f651289
+Node: Statistics References and Further Reading\7f653949
+Node: Histograms\7f655157
+Node: The histogram struct\7f656917
+Node: Histogram allocation\7f658720
+Node: Copying Histograms\7f661681
+Node: Updating and accessing histogram elements\7f662357
+Node: Searching histogram ranges\7f665624
+Node: Histogram Statistics\7f666623
+Node: Histogram Operations\7f668483
+Node: Reading and writing histograms\7f670555
+Node: Resampling from histograms\7f673597
+Node: The histogram probability distribution struct\7f674395
+Node: Example programs for histograms\7f677426
+Node: Two dimensional histograms\7f679489
+Node: The 2D histogram struct\7f680210
+Node: 2D Histogram allocation\7f682018
+Node: Copying 2D Histograms\7f684089
+Node: Updating and accessing 2D histogram elements\7f684794
+Node: Searching 2D histogram ranges\7f688450
+Node: 2D Histogram Statistics\7f689469
+Node: 2D Histogram Operations\7f692328
+Node: Reading and writing 2D histograms\7f694502
+Node: Resampling from 2D histograms\7f698131
+Node: Example programs for 2D histograms\7f701150
+Node: N-tuples\7f702978
+Node: The ntuple struct\7f704234
+Node: Creating ntuples\7f704712
+Node: Opening an existing ntuple file\7f705379
+Node: Writing ntuples\7f706007
+Node: Reading ntuples\7f706468
+Node: Closing an ntuple file\7f706799
+Node: Histogramming ntuple values\7f707139
+Node: Example ntuple programs\7f709147
+Node: Ntuple References and Further Reading\7f712476
+Node: Monte Carlo Integration\7f712797
+Node: Monte Carlo Interface\7f714042
+Node: PLAIN Monte Carlo\7f716665
+Node: MISER\7f719119
+Ref: MISER-Footnote-1\7f725795
+Node: VEGAS\7f725920
+Node: Monte Carlo Examples\7f735471
+Node: Monte Carlo Integration References and Further Reading\7f741456
+Node: Simulated Annealing\7f742238
+Node: Simulated Annealing algorithm\7f743445
+Node: Simulated Annealing functions\7f744599
+Node: Examples with Simulated Annealing\7f749134
+Node: Trivial example\7f749688
+Node: Traveling Salesman Problem\7f752339
+Node: Simulated Annealing References and Further Reading\7f755652
+Node: Ordinary Differential Equations\7f756063
+Node: Defining the ODE System\7f757254
+Node: Stepping Functions\7f760080
+Node: Adaptive Step-size Control\7f767022
+Node: Evolution\7f773094
+Node: Driver\7f777211
+Node: ODE Example programs\7f781150
+Node: ODE References and Further Reading\7f786218
+Node: Interpolation\7f787978
+Node: Introduction to Interpolation\7f789149
+Node: Interpolation Functions\7f789590
+Node: Interpolation Types\7f790797
+Node: Index Look-up and Acceleration\7f793520
+Node: Evaluation of Interpolating Functions\7f795572
+Node: Higher-level Interface\7f798073
+Node: Interpolation Example programs\7f800112
+Node: Interpolation References and Further Reading\7f803328
+Node: Numerical Differentiation\7f803901
+Node: Numerical Differentiation functions\7f804490
+Node: Numerical Differentiation Examples\7f807348
+Node: Numerical Differentiation References\7f808761
+Node: Chebyshev Approximations\7f809312
+Node: Chebyshev Definitions\7f810373
+Node: Creation and Calculation of Chebyshev Series\7f811163
+Node: Auxiliary Functions for Chebyshev Series\7f812148
+Node: Chebyshev Series Evaluation\7f812888
+Node: Derivatives and Integrals\7f814268
+Node: Chebyshev Approximation Examples\7f815510
+Node: Chebyshev Approximation References and Further Reading\7f817006
+Node: Series Acceleration\7f817455
+Node: Acceleration functions\7f818220
+Node: Acceleration functions without error estimation\7f820545
+Node: Example of accelerating a series\7f823155
+Node: Series Acceleration References\7f825501
+Node: Wavelet Transforms\7f826389
+Node: DWT Definitions\7f826930
+Node: DWT Initialization\7f827882
+Node: DWT Transform Functions\7f830531
+Node: DWT in one dimension\7f831066
+Node: DWT in two dimension\7f833085
+Node: DWT Examples\7f837663
+Node: DWT References\7f839480
+Node: Discrete Hankel Transforms\7f841643
+Node: Discrete Hankel Transform Definition\7f842111
+Node: Discrete Hankel Transform Functions\7f844310
+Node: Discrete Hankel Transform References\7f845974
+Node: One dimensional Root-Finding\7f846378
+Node: Root Finding Overview\7f847638
+Node: Root Finding Caveats\7f849496
+Node: Initializing the Solver\7f851263
+Node: Providing the function to solve\7f853896
+Node: Search Bounds and Guesses\7f857444
+Node: Root Finding Iteration\7f858307
+Node: Search Stopping Parameters\7f860156
+Node: Root Bracketing Algorithms\7f862670
+Node: Root Finding Algorithms using Derivatives\7f865968
+Ref: Root Finding Algorithms using Derivatives-Footnote-1\7f869510
+Node: Root Finding Examples\7f869665
+Node: Root Finding References and Further Reading\7f876953
+Node: One dimensional Minimization\7f877592
+Node: Minimization Overview\7f878894
+Node: Minimization Caveats\7f880600
+Node: Initializing the Minimizer\7f881937
+Node: Providing the function to minimize\7f884178
+Node: Minimization Iteration\7f884656
+Node: Minimization Stopping Parameters\7f886792
+Node: Minimization Algorithms\7f888401
+Node: Minimization Examples\7f891005
+Node: Minimization References and Further Reading\7f893932
+Node: Multidimensional Root-Finding\7f894388
+Node: Overview of Multidimensional Root Finding\7f895877
+Node: Initializing the Multidimensional Solver\7f898064
+Node: Providing the multidimensional system of equations to solve\7f901295
+Node: Iteration of the multidimensional solver\7f906200
+Node: Search Stopping Parameters for the multidimensional solver\7f908479
+Node: Algorithms using Derivatives\7f910216
+Node: Algorithms without Derivatives\7f915045
+Node: Example programs for Multidimensional Root finding\7f918133
+Node: References and Further Reading for Multidimensional Root Finding\7f926746
+Node: Multidimensional Minimization\7f927985
+Node: Multimin Overview\7f929338
+Node: Multimin Caveats\7f931415
+Node: Initializing the Multidimensional Minimizer\7f932164
+Node: Providing a function to minimize\7f935325
+Node: Multimin Iteration\7f939377
+Node: Multimin Stopping Criteria\7f941576
+Node: Multimin Algorithms with Derivatives\7f943145
+Node: Multimin Algorithms without Derivatives\7f946673
+Node: Multimin Examples\7f949673
+Node: Multimin References and Further Reading\7f956239
+Node: Least-Squares Fitting\7f957104
+Node: Fitting Overview\7f958103
+Node: Linear regression\7f960437
+Node: Linear fitting without a constant term\7f963039
+Node: Multi-parameter fitting\7f965232
+Node: Fitting Examples\7f971046
+Node: Fitting References and Further Reading\7f977871
+Node: Nonlinear Least-Squares Fitting\7f978693
+Node: Overview of Nonlinear Least-Squares Fitting\7f980143
+Node: Initializing the Nonlinear Least-Squares Solver\7f981610
+Node: Providing the Function to be Minimized\7f984475
+Node: Iteration of the Minimization Algorithm\7f987412
+Node: Search Stopping Parameters for Minimization Algorithms\7f989262
+Node: Minimization Algorithms using Derivatives\7f991357
+Ref: Minimization Algorithms using Derivatives-Footnote-1\7f994838
+Node: Minimization Algorithms without Derivatives\7f994927
+Node: Computing the covariance matrix of best fit parameters\7f995319
+Node: Example programs for Nonlinear Least-Squares Fitting\7f997353
+Node: References and Further Reading for Nonlinear Least-Squares Fitting\7f1005081
+Node: Basis Splines\7f1005817
+Node: Overview of B-splines\7f1006717
+Node: Initializing the B-splines solver\7f1008026
+Node: Constructing the knots vector\7f1009402
+Node: Evaluation of B-spline basis functions\7f1010189
+Node: Evaluation of B-spline basis function derivatives\7f1011846
+Node: Obtaining Greville abscissae for B-spline basis functions\7f1013838
+Node: Example programs for B-splines\7f1014880
+Node: References and Further Reading\7f1018892
+Node: Physical Constants\7f1019697
+Node: Fundamental Constants\7f1021107
+Node: Astronomy and Astrophysics\7f1022246
+Node: Atomic and Nuclear Physics\7f1022911
+Node: Measurement of Time\7f1024562
+Node: Imperial Units\7f1024992
+Node: Speed and Nautical Units\7f1025434
+Node: Printers Units\7f1025938
+Node: Volume Area and Length\7f1026261
+Node: Mass and Weight\7f1026947
+Node: Thermal Energy and Power\7f1027766
+Node: Pressure\7f1028189
+Node: Viscosity\7f1028802
+Node: Light and Illumination\7f1029078
+Node: Radioactivity\7f1029670
+Node: Force and Energy\7f1030005
+Node: Prefixes\7f1030409
+Node: Physical Constant Examples\7f1031152
+Node: Physical Constant References and Further Reading\7f1032941
+Node: IEEE floating-point arithmetic\7f1033671
+Node: Representation of floating point numbers\7f1034257
+Node: Setting up your IEEE environment\7f1038738
+Node: IEEE References and Further Reading\7f1045730
+Node: Debugging Numerical Programs\7f1046885
+Node: Using gdb\7f1047369
+Node: Examining floating point registers\7f1050712
+Node: Handling floating point exceptions\7f1051997
+Node: GCC warning options for numerical programs\7f1053409
+Node: Debugging References\7f1057371
+Node: Contributors to GSL\7f1058083
+Node: Autoconf Macros\7f1062552
+Node: GSL CBLAS Library\7f1066581
+Node: Level 1 CBLAS Functions\7f1067108
+Node: Level 2 CBLAS Functions\7f1072410
+Node: Level 3 CBLAS Functions\7f1089080
+Node: GSL CBLAS Examples\7f1098742
+Node: Free Software Needs Free Documentation\7f1100304
+Node: GNU General Public License\7f1105373
+Node: GNU Free Documentation License\7f1142985
+Node: Function Index\7f1168153
+Node: Variable Index\7f1417524
+Node: Type Index\7f1420827
+Node: Concept Index\7f1435602
+\1f
+End Tag Table

diff --git a/util/X86LINUX64/share/info/gsl-ref.info-1 b/util/X86LINUX64/share/info/gsl-ref.info-1
new file mode 100644 (file)
index 0000000..bdc5d7b
--- /dev/null
+++ b/util/X86LINUX64/share/info/gsl-ref.info-1
@@ -0,0 +1,7374 @@
+This is gsl-ref.info, produced by makeinfo version 4.13 from
+gsl-ref.texi.
+
+INFO-DIR-SECTION Software libraries
+START-INFO-DIR-ENTRY
+* gsl-ref: (gsl-ref).                   GNU Scientific Library - Reference
+END-INFO-DIR-ENTRY
+
+   Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004,
+2005, 2006, 2007, 2008, 2009, 2010, 2011 The GSL Team.
+
+   Permission is granted to copy, distribute and/or modify this document
+under the terms of the GNU Free Documentation License, Version 1.3 or
+any later version published by the Free Software Foundation; with the
+Invariant Sections being "GNU General Public License" and "Free Software
+Needs Free Documentation", the Front-Cover text being "A GNU Manual",
+and with the Back-Cover Text being (a) (see below).  A copy of the
+license is included in the section entitled "GNU Free Documentation
+License".
+
+   (a) The Back-Cover Text is: "You have the freedom to copy and modify
+this GNU Manual."
+
+\1f
+File: gsl-ref.info,  Node: Top,  Next: Introduction,  Prev: (dir),  Up: (dir)
+
+GSL
+***
+
+This file documents the GNU Scientific Library (GSL), a collection of
+numerical routines for scientific computing.  It corresponds to release
+1.15 of the library.  Please report any errors in this manual to
+<bug-gsl@gnu.org>.
+
+   More information about GSL can be found at the project homepage,
+`http://www.gnu.org/software/gsl/'.
+
+   Printed copies of this manual can be purchased from Network Theory
+Ltd at `http://www.network-theory.co.uk/gsl/manual/'. The money raised
+from sales of the manual helps support the development of GSL.
+
+   A Japanese translation of this manual is available from the GSL
+project homepage thanks to Daisuke Tominaga.
+
+   Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004,
+2005, 2006, 2007, 2008, 2009, 2010, 2011 The GSL Team.
+
+   Permission is granted to copy, distribute and/or modify this document
+under the terms of the GNU Free Documentation License, Version 1.3 or
+any later version published by the Free Software Foundation; with the
+Invariant Sections being "GNU General Public License" and "Free Software
+Needs Free Documentation", the Front-Cover text being "A GNU Manual",
+and with the Back-Cover Text being (a) (see below).  A copy of the
+license is included in the section entitled "GNU Free Documentation
+License".
+
+   (a) The Back-Cover Text is: "You have the freedom to copy and modify
+this GNU Manual."
+
+
+* Menu:
+
+* Introduction::
+* Using the library::
+* Error Handling::
+* Mathematical Functions::
+* Complex Numbers::
+* Polynomials::
+* Special Functions::
+* Vectors and Matrices::
+* Permutations::
+* Combinations::
+* Multisets::
+* Sorting::
+* BLAS Support::
+* Linear Algebra::
+* Eigensystems::
+* Fast Fourier Transforms::
+* Numerical Integration::
+* Random Number Generation::
+* Quasi-Random Sequences::
+* Random Number Distributions::
+* Statistics::
+* Histograms::
+* N-tuples::
+* Monte Carlo Integration::
+* Simulated Annealing::
+* Ordinary Differential Equations::
+* Interpolation::
+* Numerical Differentiation::
+* Chebyshev Approximations::
+* Series Acceleration::
+* Wavelet Transforms::
+* Discrete Hankel Transforms::
+* One dimensional Root-Finding::
+* One dimensional Minimization::
+* Multidimensional Root-Finding::
+* Multidimensional Minimization::
+* Least-Squares Fitting::
+* Nonlinear Least-Squares Fitting::
+* Basis Splines::
+* Physical Constants::
+* IEEE floating-point arithmetic::
+* Debugging Numerical Programs::
+* Contributors to GSL::
+* Autoconf Macros::
+* GSL CBLAS Library::
+* Free Software Needs Free Documentation::
+* GNU General Public License::
+* GNU Free Documentation License::
+* Function Index::
+* Variable Index::
+* Type Index::
+* Concept Index::
+
+\1f
+File: gsl-ref.info,  Node: Introduction,  Next: Using the library,  Prev: Top,  Up: Top
+
+1 Introduction
+**************
+
+The GNU Scientific Library (GSL) is a collection of routines for
+numerical computing.  The routines have been written from scratch in C,
+and present a modern Applications Programming Interface (API) for C
+programmers, allowing wrappers to be written for very high level
+languages.  The source code is distributed under the GNU General Public
+License.
+
+* Menu:
+
+* Routines available in GSL::
+* GSL is Free Software::
+* Obtaining GSL::
+* No Warranty::
+* Reporting Bugs::
+* Further Information::
+* Conventions used in this manual::
+
+\1f
+File: gsl-ref.info,  Node: Routines available in GSL,  Next: GSL is Free Software,  Up: Introduction
+
+1.1 Routines available in GSL
+=============================
+
+The library covers a wide range of topics in numerical computing.
+Routines are available for the following areas,
+
+     Complex Numbers                  Roots of Polynomials             
+     Special Functions                Vectors and Matrices             
+     Permutations                     Combinations                     
+     Sorting                          BLAS Support                     
+     Linear Algebra                   CBLAS Library                    
+     Fast Fourier Transforms          Eigensystems                     
+     Random Numbers                   Quadrature                       
+     Random Distributions             Quasi-Random Sequences           
+     Histograms                       Statistics                       
+     Monte Carlo Integration          N-Tuples                         
+     Differential Equations           Simulated Annealing              
+     Numerical Differentiation        Interpolation                    
+     Series Acceleration              Chebyshev Approximations         
+     Root-Finding                     Discrete Hankel Transforms       
+     Least-Squares Fitting            Minimization                     
+     IEEE Floating-Point              Physical Constants               
+     Basis Splines                    Wavelets                         
+
+The use of these routines is described in this manual.  Each chapter
+provides detailed definitions of the functions, followed by example
+programs and references to the articles on which the algorithms are
+based.
+
+   Where possible the routines have been based on reliable public-domain
+packages such as FFTPACK and QUADPACK, which the developers of GSL have
+reimplemented in C with modern coding conventions.
+
+\1f
+File: gsl-ref.info,  Node: GSL is Free Software,  Next: Obtaining GSL,  Prev: Routines available in GSL,  Up: Introduction
+
+1.2 GSL is Free Software
+========================
+
+The subroutines in the GNU Scientific Library are "free software"; this
+means that everyone is free to use them, and to redistribute them in
+other free programs.  The library is not in the public domain; it is
+copyrighted and there are conditions on its distribution.  These
+conditions are designed to permit everything that a good cooperating
+citizen would want to do.  What is not allowed is to try to prevent
+others from further sharing any version of the software that they might
+get from you.
+
+   Specifically, we want to make sure that you have the right to share
+copies of programs that you are given which use the GNU Scientific
+Library, that you receive their source code or else can get it if you
+want it, that you can change these programs or use pieces of them in new
+free programs, and that you know you can do these things.
+
+   To make sure that everyone has such rights, we have to forbid you to
+deprive anyone else of these rights.  For example, if you distribute
+copies of any code which uses the GNU Scientific Library, you must give
+the recipients all the rights that you have received.  You must make
+sure that they, too, receive or can get the source code, both to the
+library and the code which uses it.  And you must tell them their
+rights.  This means that the library should not be redistributed in
+proprietary programs.
+
+   Also, for our own protection, we must make certain that everyone
+finds out that there is no warranty for the GNU Scientific Library.  If
+these programs are modified by someone else and passed on, we want their
+recipients to know that what they have is not what we distributed, so
+that any problems introduced by others will not reflect on our
+reputation.
+
+   The precise conditions for the distribution of software related to
+the GNU Scientific Library are found in the GNU General Public License
+(*note GNU General Public License::).  Further information about this
+license is available from the GNU Project webpage `Frequently Asked
+Questions about the GNU GPL',
+
+     `http://www.gnu.org/copyleft/gpl-faq.html'
+
+The Free Software Foundation also operates a license consulting service
+for commercial users (contact details available from
+`http://www.fsf.org/').
+
+\1f
+File: gsl-ref.info,  Node: Obtaining GSL,  Next: No Warranty,  Prev: GSL is Free Software,  Up: Introduction
+
+1.3 Obtaining GSL
+=================
+
+The source code for the library can be obtained in different ways, by
+copying it from a friend, purchasing it on CDROM or downloading it from
+the internet. A list of public ftp servers which carry the source code
+can be found on the GNU website,
+
+     `http://www.gnu.org/software/gsl/'
+
+The preferred platform for the library is a GNU system, which allows it
+to take advantage of additional features in the GNU C compiler and GNU C
+library.  However, the library is fully portable and should compile on
+most systems with a C compiler.
+
+   Announcements of new releases, updates and other relevant events are
+made on the `info-gsl@gnu.org' mailing list.  To subscribe to this
+low-volume list, send an email of the following form:
+
+     To: info-gsl-request@gnu.org
+     Subject: subscribe
+
+You will receive a response asking you to reply in order to confirm
+your subscription.
+
+\1f
+File: gsl-ref.info,  Node: No Warranty,  Next: Reporting Bugs,  Prev: Obtaining GSL,  Up: Introduction
+
+1.4 No Warranty
+===============
+
+The software described in this manual has no warranty, it is provided
+"as is".  It is your responsibility to validate the behavior of the
+routines and their accuracy using the source code provided, or to
+purchase support and warranties from commercial redistributors.  Consult
+the GNU General Public license for further details (*note GNU General
+Public License::).
+
+\1f
+File: gsl-ref.info,  Node: Reporting Bugs,  Next: Further Information,  Prev: No Warranty,  Up: Introduction
+
+1.5 Reporting Bugs
+==================
+
+A list of known bugs can be found in the `BUGS' file included in the
+GSL distribution or online in the GSL bug tracker.(1)  Details of
+compilation problems can be found in the `INSTALL' file.
+
+   If you find a bug which is not listed in these files, please report
+it to <bug-gsl@gnu.org>.
+
+   All bug reports should include:
+
+   * The version number of GSL
+
+   * The hardware and operating system
+
+   * The compiler used, including version number and compilation options
+
+   * A description of the bug behavior
+
+   * A short program which exercises the bug
+
+It is useful if you can check whether the same problem occurs when the
+library is compiled without optimization.  Thank you.
+
+   Any errors or omissions in this manual can also be reported to the
+same address.
+
+   ---------- Footnotes ----------
+
+   (1) `http://savannah.gnu.org/bugs/?group=gsl'
+
+\1f
+File: gsl-ref.info,  Node: Further Information,  Next: Conventions used in this manual,  Prev: Reporting Bugs,  Up: Introduction
+
+1.6 Further Information
+=======================
+
+Additional information, including online copies of this manual, links to
+related projects, and mailing list archives are available from the
+website mentioned above.
+
+   Any questions about the use and installation of the library can be
+asked on the mailing list `help-gsl@gnu.org'.  To subscribe to this
+list, send an email of the following form:
+
+     To: help-gsl-request@gnu.org
+     Subject: subscribe
+
+This mailing list can be used to ask questions not covered by this
+manual, and to contact the developers of the library.
+
+   If you would like to refer to the GNU Scientific Library in a journal
+article, the recommended way is to cite this reference manual, e.g. `M.
+Galassi et al, GNU Scientific Library Reference Manual (3rd Ed.), ISBN
+0954612078'.
+
+   If you want to give a url, use "`http://www.gnu.org/software/gsl/'".
+
+\1f
+File: gsl-ref.info,  Node: Conventions used in this manual,  Prev: Further Information,  Up: Introduction
+
+1.7 Conventions used in this manual
+===================================
+
+This manual contains many examples which can be typed at the keyboard.
+A command entered at the terminal is shown like this,
+
+     $ command
+
+The first character on the line is the terminal prompt, and should not
+be typed.  The dollar sign `$' is used as the standard prompt in this
+manual, although some systems may use a different character.
+
+   The examples assume the use of the GNU operating system.  There may
+be minor differences in the output on other systems.  The commands for
+setting environment variables use the Bourne shell syntax of the
+standard GNU shell (`bash').
+
+\1f
+File: gsl-ref.info,  Node: Using the library,  Next: Error Handling,  Prev: Introduction,  Up: Top
+
+2 Using the library
+*******************
+
+This chapter describes how to compile programs that use GSL, and
+introduces its conventions.
+
+* Menu:
+
+* An Example Program::
+* Compiling and Linking::
+* Shared Libraries::
+* ANSI C Compliance::
+* Inline functions::
+* Long double::
+* Portability functions::
+* Alternative optimized functions::
+* Support for different numeric types::
+* Compatibility with C++::
+* Aliasing of arrays::
+* Thread-safety::
+* Deprecated Functions::
+* Code Reuse::
+
+\1f
+File: gsl-ref.info,  Node: An Example Program,  Next: Compiling and Linking,  Up: Using the library
+
+2.1 An Example Program
+======================
+
+The following short program demonstrates the use of the library by
+computing the value of the Bessel function J_0(x) for x=5,
+
+     #include <stdio.h>
+     #include <gsl/gsl_sf_bessel.h>
+
+     int
+     main (void)
+     {
+       double x = 5.0;
+       double y = gsl_sf_bessel_J0 (x);
+       printf ("J0(%g) = %.18e\n", x, y);
+       return 0;
+     }
+
+The output is shown below, and should be correct to double-precision
+accuracy,(1)
+
+     J0(5) = -1.775967713143382920e-01
+
+The steps needed to compile this program are described in the following
+sections.
+
+   ---------- Footnotes ----------
+
+   (1) The last few digits may vary slightly depending on the compiler
+and platform used--this is normal.
+
+\1f
+File: gsl-ref.info,  Node: Compiling and Linking,  Next: Shared Libraries,  Prev: An Example Program,  Up: Using the library
+
+2.2 Compiling and Linking
+=========================
+
+The library header files are installed in their own `gsl' directory.
+You should write any preprocessor include statements with a `gsl/'
+directory prefix thus,
+
+     #include <gsl/gsl_math.h>
+
+If the directory is not installed on the standard search path of your
+compiler you will also need to provide its location to the preprocessor
+as a command line flag.  The default location of the `gsl' directory is
+`/usr/local/include/gsl'.  A typical compilation command for a source
+file `example.c' with the GNU C compiler `gcc' is,
+
+     $ gcc -Wall -I/usr/local/include -c example.c
+
+This results in an object file `example.o'.   The default include path
+for `gcc' searches `/usr/local/include' automatically so the `-I'
+option can actually be omitted when GSL is installed in its default
+location.
+
+* Menu:
+
+* Linking programs with the library::
+* Linking with an alternative BLAS library::
+
+\1f
+File: gsl-ref.info,  Node: Linking programs with the library,  Next: Linking with an alternative BLAS library,  Up: Compiling and Linking
+
+2.2.1 Linking programs with the library
+---------------------------------------
+
+The library is installed as a single file, `libgsl.a'.  A shared
+version of the library `libgsl.so' is also installed on systems that
+support shared libraries.  The default location of these files is
+`/usr/local/lib'.  If this directory is not on the standard search path
+of your linker you will also need to provide its location as a command
+line flag.
+
+   To link against the library you need to specify both the main
+library and a supporting CBLAS library, which provides standard basic
+linear algebra subroutines.  A suitable CBLAS implementation is
+provided in the library `libgslcblas.a' if your system does not provide
+one.  The following example shows how to link an application with the
+library,
+
+     $ gcc -L/usr/local/lib example.o -lgsl -lgslcblas -lm
+
+The default library path for `gcc' searches `/usr/local/lib'
+automatically so the `-L' option can be omitted when GSL is installed
+in its default location.
+
+   The option `-lm' links with the system math library. On some systems
+it is not needed.(1)
+
+   For a tutorial introduction to the GNU C Compiler and related
+programs, see `An Introduction to GCC' (ISBN 0954161793).(2)
+
+   ---------- Footnotes ----------
+
+   (1) It is not needed on MacOS X.
+
+   (2) `http://www.network-theory.co.uk/gcc/intro/'
+
+\1f
+File: gsl-ref.info,  Node: Linking with an alternative BLAS library,  Prev: Linking programs with the library,  Up: Compiling and Linking
+
+2.2.2 Linking with an alternative BLAS library
+----------------------------------------------
+
+The following command line shows how you would link the same application
+with an alternative CBLAS library `libcblas.a',
+
+     $ gcc example.o -lgsl -lcblas -lm
+
+For the best performance an optimized platform-specific CBLAS library
+should be used for `-lcblas'.  The library must conform to the CBLAS
+standard.  The ATLAS package provides a portable high-performance BLAS
+library with a CBLAS interface.  It is free software and should be
+installed for any work requiring fast vector and matrix operations.
+The following command line will link with the ATLAS library and its
+CBLAS interface,
+
+     $ gcc example.o -lgsl -lcblas -latlas -lm
+
+If the ATLAS library is installed in a non-standard directory use the
+`-L' option to add it to the search path, as described above.
+
+   For more information about BLAS functions see *note BLAS Support::.
+
+\1f
+File: gsl-ref.info,  Node: Shared Libraries,  Next: ANSI C Compliance,  Prev: Compiling and Linking,  Up: Using the library
+
+2.3 Shared Libraries
+====================
+
+To run a program linked with the shared version of the library the
+operating system must be able to locate the corresponding `.so' file at
+runtime.  If the library cannot be found, the following error will
+occur:
+
+     $ ./a.out
+     ./a.out: error while loading shared libraries:
+     libgsl.so.0: cannot open shared object file: No such
+     file or directory
+
+To avoid this error, either modify the system dynamic linker
+configuration(1) or define the shell variable `LD_LIBRARY_PATH' to
+include the directory where the library is installed.
+
+   For example, in the Bourne shell (`/bin/sh' or `/bin/bash'), the
+library search path can be set with the following commands:
+
+     $ LD_LIBRARY_PATH=/usr/local/lib
+     $ export LD_LIBRARY_PATH
+     $ ./example
+
+In the C-shell (`/bin/csh' or `/bin/tcsh') the equivalent command is,
+
+     % setenv LD_LIBRARY_PATH /usr/local/lib
+
+The standard prompt for the C-shell in the example above is the percent
+character `%', and should not be typed as part of the command.
+
+   To save retyping these commands each session they can be placed in an
+individual or system-wide login file.
+
+   To compile a statically linked version of the program, use the
+`-static' flag in `gcc',
+
+     $ gcc -static example.o -lgsl -lgslcblas -lm
+
+   ---------- Footnotes ----------
+
+   (1) `/etc/ld.so.conf' on GNU/Linux systems.
+
+\1f
+File: gsl-ref.info,  Node: ANSI C Compliance,  Next: Inline functions,  Prev: Shared Libraries,  Up: Using the library
+
+2.4 ANSI C Compliance
+=====================
+
+The library is written in ANSI C and is intended to conform to the ANSI
+C standard (C89).  It should be portable to any system with a working
+ANSI C compiler.
+
+   The library does not rely on any non-ANSI extensions in the
+interface it exports to the user.  Programs you write using GSL can be
+ANSI compliant.  Extensions which can be used in a way compatible with
+pure ANSI C are supported, however, via conditional compilation.  This
+allows the library to take advantage of compiler extensions on those
+platforms which support them.
+
+   When an ANSI C feature is known to be broken on a particular system
+the library will exclude any related functions at compile-time.  This
+should make it impossible to link a program that would use these
+functions and give incorrect results.
+
+   To avoid namespace conflicts all exported function names and
+variables have the prefix `gsl_', while exported macros have the prefix
+`GSL_'.
+
+\1f
+File: gsl-ref.info,  Node: Inline functions,  Next: Long double,  Prev: ANSI C Compliance,  Up: Using the library
+
+2.5 Inline functions
+====================
+
+The `inline' keyword is not part of the original ANSI C standard (C89)
+so the library does not export any inline function definitions by
+default.  Inline functions were introduced officially in the newer C99
+standard but most C89 compilers have also included `inline' as an
+extension for a long time.
+
+   To allow the use of inline functions, the library provides optional
+inline versions of performance-critical routines by conditional
+compilation in the exported header files.  The inline versions of these
+functions can be included by defining the macro `HAVE_INLINE' when
+compiling an application,
+
+     $ gcc -Wall -c -DHAVE_INLINE example.c
+
+If you use `autoconf' this macro can be defined automatically.  If you
+do not define the macro `HAVE_INLINE' then the slower non-inlined
+versions of the functions will be used instead.
+
+   By default, the actual form of the inline keyword is `extern
+inline', which is a `gcc' extension that eliminates unnecessary
+function definitions.  If the form `extern inline' causes problems with
+other compilers a stricter autoconf test can be used, see *note
+Autoconf Macros::.
+
+   When compiling with `gcc' in C99 mode (`gcc -std=c99') the header
+files automatically switch to C99-compatible inline function
+declarations instead of `extern inline'.  With other C99 compilers,
+define the macro `GSL_C99_INLINE' to use these declarations.
+
+\1f
+File: gsl-ref.info,  Node: Long double,  Next: Portability functions,  Prev: Inline functions,  Up: Using the library
+
+2.6 Long double
+===============
+
+In general, the algorithms in the library are written for double
+precision only.  The `long double' type is not supported for actual
+computation.
+
+   One reason for this choice is that the precision of `long double' is
+platform dependent.  The IEEE standard only specifies the minimum
+precision of extended precision numbers, while the precision of
+`double' is the same on all platforms.
+
+   However, it is sometimes necessary to interact with external data in
+long-double format, so the vector and matrix datatypes include
+long-double versions.
+
+   It should be noted that in some system libraries the `stdio.h'
+formatted input/output functions `printf' and `scanf' are not
+implemented correctly for `long double'.  Undefined or incorrect
+results are avoided by testing these functions during the `configure'
+stage of library compilation and eliminating certain GSL functions
+which depend on them if necessary.  The corresponding line in the
+`configure' output looks like this,
+
+     checking whether printf works with long double... no
+
+Consequently when `long double' formatted input/output does not work on
+a given system it should be impossible to link a program which uses GSL
+functions dependent on this.
+
+   If it is necessary to work on a system which does not support
+formatted `long double' input/output then the options are to use binary
+formats or to convert `long double' results into `double' for reading
+and writing.
+
+\1f
+File: gsl-ref.info,  Node: Portability functions,  Next: Alternative optimized functions,  Prev: Long double,  Up: Using the library
+
+2.7 Portability functions
+=========================
+
+To help in writing portable applications GSL provides some
+implementations of functions that are found in other libraries, such as
+the BSD math library.  You can write your application to use the native
+versions of these functions, and substitute the GSL versions via a
+preprocessor macro if they are unavailable on another platform.
+
+   For example, after determining whether the BSD function `hypot' is
+available you can include the following macro definitions in a file
+`config.h' with your application,
+
+     /* Substitute gsl_hypot for missing system hypot */
+
+     #ifndef HAVE_HYPOT
+     #define hypot gsl_hypot
+     #endif
+
+The application source files can then use the include command `#include
+<config.h>' to replace each occurrence of `hypot' by `gsl_hypot' when
+`hypot' is not available.  This substitution can be made automatically
+if you use `autoconf', see *note Autoconf Macros::.
+
+   In most circumstances the best strategy is to use the native
+versions of these functions when available, and fall back to GSL
+versions otherwise, since this allows your application to take
+advantage of any platform-specific optimizations in the system library.
+This is the strategy used within GSL itself.
+
+\1f
+File: gsl-ref.info,  Node: Alternative optimized functions,  Next: Support for different numeric types,  Prev: Portability functions,  Up: Using the library
+
+2.8 Alternative optimized functions
+===================================
+
+The main implementation of some functions in the library will not be
+optimal on all architectures.  For example, there are several ways to
+compute a Gaussian random variate and their relative speeds are
+platform-dependent.  In cases like this the library provides alternative
+implementations of these functions with the same interface.  If you
+write your application using calls to the standard implementation you
+can select an alternative version later via a preprocessor definition.
+It is also possible to introduce your own optimized functions this way
+while retaining portability.  The following lines demonstrate the use of
+a platform-dependent choice of methods for sampling from the Gaussian
+distribution,
+
+     #ifdef SPARC
+     #define gsl_ran_gaussian gsl_ran_gaussian_ratio_method
+     #endif
+     #ifdef INTEL
+     #define gsl_ran_gaussian my_gaussian
+     #endif
+
+These lines would be placed in the configuration header file `config.h'
+of the application, which should then be included by all the source
+files.  Note that the alternative implementations will not produce
+bit-for-bit identical results, and in the case of random number
+distributions will produce an entirely different stream of random
+variates.
+
+\1f
+File: gsl-ref.info,  Node: Support for different numeric types,  Next: Compatibility with C++,  Prev: Alternative optimized functions,  Up: Using the library
+
+2.9 Support for different numeric types
+=======================================
+
+Many functions in the library are defined for different numeric types.
+This feature is implemented by varying the name of the function with a
+type-related modifier--a primitive form of C++ templates.  The modifier
+is inserted into the function name after the initial module prefix.
+The following table shows the function names defined for all the
+numeric types of an imaginary module `gsl_foo' with function `fn',
+
+     gsl_foo_fn               double
+     gsl_foo_long_double_fn   long double
+     gsl_foo_float_fn         float
+     gsl_foo_long_fn          long
+     gsl_foo_ulong_fn         unsigned long
+     gsl_foo_int_fn           int
+     gsl_foo_uint_fn          unsigned int
+     gsl_foo_short_fn         short
+     gsl_foo_ushort_fn        unsigned short
+     gsl_foo_char_fn          char
+     gsl_foo_uchar_fn         unsigned char
+
+The normal numeric precision `double' is considered the default and
+does not require a suffix.  For example, the function `gsl_stats_mean'
+computes the mean of double precision numbers, while the function
+`gsl_stats_int_mean' computes the mean of integers.
+
+   A corresponding scheme is used for library defined types, such as
+`gsl_vector' and `gsl_matrix'.  In this case the modifier is appended
+to the type name.  For example, if a module defines a new
+type-dependent struct or typedef `gsl_foo' it is modified for other
+types in the following way,
+
+     gsl_foo                  double
+     gsl_foo_long_double      long double
+     gsl_foo_float            float
+     gsl_foo_long             long
+     gsl_foo_ulong            unsigned long
+     gsl_foo_int              int
+     gsl_foo_uint             unsigned int
+     gsl_foo_short            short
+     gsl_foo_ushort           unsigned short
+     gsl_foo_char             char
+     gsl_foo_uchar            unsigned char
+
+When a module contains type-dependent definitions the library provides
+individual header files for each type.  The filenames are modified as
+shown in the below.  For convenience the default header includes the
+definitions for all the types.  To include only the double precision
+header file, or any other specific type, use its individual filename.
+
+     #include <gsl/gsl_foo.h>               All types
+     #include <gsl/gsl_foo_double.h>        double
+     #include <gsl/gsl_foo_long_double.h>   long double
+     #include <gsl/gsl_foo_float.h>         float
+     #include <gsl/gsl_foo_long.h>          long
+     #include <gsl/gsl_foo_ulong.h>         unsigned long
+     #include <gsl/gsl_foo_int.h>           int
+     #include <gsl/gsl_foo_uint.h>          unsigned int
+     #include <gsl/gsl_foo_short.h>         short
+     #include <gsl/gsl_foo_ushort.h>        unsigned short
+     #include <gsl/gsl_foo_char.h>          char
+     #include <gsl/gsl_foo_uchar.h>         unsigned char
+
+\1f
+File: gsl-ref.info,  Node: Compatibility with C++,  Next: Aliasing of arrays,  Prev: Support for different numeric types,  Up: Using the library
+
+2.10 Compatibility with C++
+===========================
+
+The library header files automatically define functions to have `extern
+"C"' linkage when included in C++ programs.  This allows the functions
+to be called directly from C++.
+
+   To use C++ exception handling within user-defined functions passed to
+the library as parameters, the library must be built with the
+additional `CFLAGS' compilation option `-fexceptions'.
+
+\1f
+File: gsl-ref.info,  Node: Aliasing of arrays,  Next: Thread-safety,  Prev: Compatibility with C++,  Up: Using the library
+
+2.11 Aliasing of arrays
+=======================
+
+The library assumes that arrays, vectors and matrices passed as
+modifiable arguments are not aliased and do not overlap with each other.
+This removes the need for the library to handle overlapping memory
+regions as a special case, and allows additional optimizations to be
+used.  If overlapping memory regions are passed as modifiable arguments
+then the results of such functions will be undefined.  If the arguments
+will not be modified (for example, if a function prototype declares them
+as `const' arguments) then overlapping or aliased memory regions can be
+safely used.
+
+\1f
+File: gsl-ref.info,  Node: Thread-safety,  Next: Deprecated Functions,  Prev: Aliasing of arrays,  Up: Using the library
+
+2.12 Thread-safety
+==================
+
+The library can be used in multi-threaded programs.  All the functions
+are thread-safe, in the sense that they do not use static variables.
+Memory is always associated with objects and not with functions.  For
+functions which use "workspace" objects as temporary storage the
+workspaces should be allocated on a per-thread basis.  For functions
+which use "table" objects as read-only memory the tables can be used by
+multiple threads simultaneously.  Table arguments are always declared
+`const' in function prototypes, to indicate that they may be safely
+accessed by different threads.
+
+   There are a small number of static global variables which are used to
+control the overall behavior of the library (e.g. whether to use
+range-checking, the function to call on fatal error, etc).  These
+variables are set directly by the user, so they should be initialized
+once at program startup and not modified by different threads.
+
+\1f
+File: gsl-ref.info,  Node: Deprecated Functions,  Next: Code Reuse,  Prev: Thread-safety,  Up: Using the library
+
+2.13 Deprecated Functions
+=========================
+
+From time to time, it may be necessary for the definitions of some
+functions to be altered or removed from the library.  In these
+circumstances the functions will first be declared "deprecated" and
+then removed from subsequent versions of the library.  Functions that
+are deprecated can be disabled in the current release by setting the
+preprocessor definition `GSL_DISABLE_DEPRECATED'.  This allows existing
+code to be tested for forwards compatibility.
+
+\1f
+File: gsl-ref.info,  Node: Code Reuse,  Prev: Deprecated Functions,  Up: Using the library
+
+2.14 Code Reuse
+===============
+
+Where possible the routines in the library have been written to avoid
+dependencies between modules and files.  This should make it possible to
+extract individual functions for use in your own applications, without
+needing to have the whole library installed.  You may need to define
+certain macros such as `GSL_ERROR' and remove some `#include'
+statements in order to compile the files as standalone units. Reuse of
+the library code in this way is encouraged, subject to the terms of the
+GNU General Public License.
+
+\1f
+File: gsl-ref.info,  Node: Error Handling,  Next: Mathematical Functions,  Prev: Using the library,  Up: Top
+
+3 Error Handling
+****************
+
+This chapter describes the way that GSL functions report and handle
+errors.  By examining the status information returned by every function
+you can determine whether it succeeded or failed, and if it failed you
+can find out what the precise cause of failure was.  You can also define
+your own error handling functions to modify the default behavior of the
+library.
+
+   The functions described in this section are declared in the header
+file `gsl_errno.h'.
+
+* Menu:
+
+* Error Reporting::
+* Error Codes::
+* Error Handlers::
+* Using GSL error reporting in your own functions::
+* Error Reporting Examples::
+
+\1f
+File: gsl-ref.info,  Node: Error Reporting,  Next: Error Codes,  Up: Error Handling
+
+3.1 Error Reporting
+===================
+
+The library follows the thread-safe error reporting conventions of the
+POSIX Threads library.  Functions return a non-zero error code to
+indicate an error and `0' to indicate success.
+
+     int status = gsl_function (...)
+
+     if (status) { /* an error occurred */
+       .....
+       /* status value specifies the type of error */
+     }
+
+   The routines report an error whenever they cannot perform the task
+requested of them.  For example, a root-finding function would return a
+non-zero error code if could not converge to the requested accuracy, or
+exceeded a limit on the number of iterations.  Situations like this are
+a normal occurrence when using any mathematical library and you should
+check the return status of the functions that you call.
+
+   Whenever a routine reports an error the return value specifies the
+type of error.  The return value is analogous to the value of the
+variable `errno' in the C library.  The caller can examine the return
+code and decide what action to take, including ignoring the error if it
+is not considered serious.
+
+   In addition to reporting errors by return codes the library also has
+an error handler function `gsl_error'.  This function is called by
+other library functions when they report an error, just before they
+return to the caller.  The default behavior of the error handler is to
+print a message and abort the program,
+
+     gsl: file.c:67: ERROR: invalid argument supplied by user
+     Default GSL error handler invoked.
+     Aborted
+
+   The purpose of the `gsl_error' handler is to provide a function
+where a breakpoint can be set that will catch library errors when
+running under the debugger.  It is not intended for use in production
+programs, which should handle any errors using the return codes.
+
+\1f
+File: gsl-ref.info,  Node: Error Codes,  Next: Error Handlers,  Prev: Error Reporting,  Up: Error Handling
+
+3.2 Error Codes
+===============
+
+The error code numbers returned by library functions are defined in the
+file `gsl_errno.h'.  They all have the prefix `GSL_' and expand to
+non-zero constant integer values. Error codes above 1024 are reserved
+for applications, and are not used by the library.  Many of the error
+codes use the same base name as the corresponding error code in the C
+library.  Here are some of the most common error codes,
+
+ -- Macro: int GSL_EDOM
+     Domain error; used by mathematical functions when an argument
+     value does not fall into the domain over which the function is
+     defined (like EDOM in the C library)
+
+ -- Macro: int GSL_ERANGE
+     Range error; used by mathematical functions when the result value
+     is not representable because of overflow or underflow (like ERANGE
+     in the C library)
+
+ -- Macro: int GSL_ENOMEM
+     No memory available.  The system cannot allocate more virtual
+     memory because its capacity is full (like ENOMEM in the C
+     library).  This error is reported when a GSL routine encounters
+     problems when trying to allocate memory with `malloc'.
+
+ -- Macro: int GSL_EINVAL
+     Invalid argument.  This is used to indicate various kinds of
+     problems with passing the wrong argument to a library function
+     (like EINVAL in the C library).
+
+   The error codes can be converted into an error message using the
+function `gsl_strerror'.
+
+ -- Function: const char * gsl_strerror (const int GSL_ERRNO)
+     This function returns a pointer to a string describing the error
+     code GSL_ERRNO. For example,
+
+          printf ("error: %s\n", gsl_strerror (status));
+
+     would print an error message like `error: output range error' for a
+     status value of `GSL_ERANGE'.
+
+\1f
+File: gsl-ref.info,  Node: Error Handlers,  Next: Using GSL error reporting in your own functions,  Prev: Error Codes,  Up: Error Handling
+
+3.3 Error Handlers
+==================
+
+The default behavior of the GSL error handler is to print a short
+message and call `abort'.  When this default is in use programs will
+stop with a core-dump whenever a library routine reports an error.
+This is intended as a fail-safe default for programs which do not check
+the return status of library routines (we don't encourage you to write
+programs this way).
+
+   If you turn off the default error handler it is your responsibility
+to check the return values of routines and handle them yourself.  You
+can also customize the error behavior by providing a new error handler.
+For example, an alternative error handler could log all errors to a
+file, ignore certain error conditions (such as underflows), or start the
+debugger and attach it to the current process when an error occurs.
+
+   All GSL error handlers have the type `gsl_error_handler_t', which is
+defined in `gsl_errno.h',
+
+ -- Data Type: gsl_error_handler_t
+     This is the type of GSL error handler functions.  An error handler
+     will be passed four arguments which specify the reason for the
+     error (a string), the name of the source file in which it occurred
+     (also a string), the line number in that file (an integer) and the
+     error number (an integer).  The source file and line number are
+     set at compile time using the `__FILE__' and `__LINE__' directives
+     in the preprocessor.  An error handler function returns type
+     `void'.  Error handler functions should be defined like this,
+
+          void handler (const char * reason,
+                        const char * file,
+                        int line,
+                        int gsl_errno)
+
+To request the use of your own error handler you need to call the
+function `gsl_set_error_handler' which is also declared in
+`gsl_errno.h',
+
+ -- Function: gsl_error_handler_t * gsl_set_error_handler
+          (gsl_error_handler_t * NEW_HANDLER)
+     This function sets a new error handler, NEW_HANDLER, for the GSL
+     library routines.  The previous handler is returned (so that you
+     can restore it later).  Note that the pointer to a user defined
+     error handler function is stored in a static variable, so there
+     can be only one error handler per program.  This function should
+     be not be used in multi-threaded programs except to set up a
+     program-wide error handler from a master thread.  The following
+     example shows how to set and restore a new error handler,
+
+          /* save original handler, install new handler */
+          old_handler = gsl_set_error_handler (&my_handler);
+
+          /* code uses new handler */
+          .....
+
+          /* restore original handler */
+          gsl_set_error_handler (old_handler);
+
+     To use the default behavior (`abort' on error) set the error
+     handler to `NULL',
+
+          old_handler = gsl_set_error_handler (NULL);
+
+ -- Function: gsl_error_handler_t * gsl_set_error_handler_off ()
+     This function turns off the error handler by defining an error
+     handler which does nothing. This will cause the program to
+     continue after any error, so the return values from any library
+     routines must be checked.  This is the recommended behavior for
+     production programs.  The previous handler is returned (so that
+     you can restore it later).
+
+   The error behavior can be changed for specific applications by
+recompiling the library with a customized definition of the `GSL_ERROR'
+macro in the file `gsl_errno.h'.
+
+\1f
+File: gsl-ref.info,  Node: Using GSL error reporting in your own functions,  Next: Error Reporting Examples,  Prev: Error Handlers,  Up: Error Handling
+
+3.4 Using GSL error reporting in your own functions
+===================================================
+
+If you are writing numerical functions in a program which also uses GSL
+code you may find it convenient to adopt the same error reporting
+conventions as in the library.
+
+   To report an error you need to call the function `gsl_error' with a
+string describing the error and then return an appropriate error code
+from `gsl_errno.h', or a special value, such as `NaN'.  For convenience
+the file `gsl_errno.h' defines two macros which carry out these steps:
+
+ -- Macro: GSL_ERROR (REASON, GSL_ERRNO)
+     This macro reports an error using the GSL conventions and returns a
+     status value of `gsl_errno'.  It expands to the following code
+     fragment,
+
+          gsl_error (reason, __FILE__, __LINE__, gsl_errno);
+          return gsl_errno;
+
+     The macro definition in `gsl_errno.h' actually wraps the code in a
+     `do { ... } while (0)' block to prevent possible parsing problems.
+
+   Here is an example of how the macro could be used to report that a
+routine did not achieve a requested tolerance.  To report the error the
+routine needs to return the error code `GSL_ETOL'.
+
+     if (residual > tolerance)
+       {
+         GSL_ERROR("residual exceeds tolerance", GSL_ETOL);
+       }
+
+ -- Macro: GSL_ERROR_VAL (REASON, GSL_ERRNO, VALUE)
+     This macro is the same as `GSL_ERROR' but returns a user-defined
+     value of VALUE instead of an error code.  It can be used for
+     mathematical functions that return a floating point value.
+
+   The following example shows how to return a `NaN' at a mathematical
+singularity using the `GSL_ERROR_VAL' macro,
+
+     if (x == 0)
+       {
+         GSL_ERROR_VAL("argument lies on singularity",
+                       GSL_ERANGE, GSL_NAN);
+       }
+
+\1f
+File: gsl-ref.info,  Node: Error Reporting Examples,  Prev: Using GSL error reporting in your own functions,  Up: Error Handling
+
+3.5 Examples
+============
+
+Here is an example of some code which checks the return value of a
+function where an error might be reported,
+
+     #include <stdio.h>
+     #include <gsl/gsl_errno.h>
+     #include <gsl/gsl_fft_complex.h>
+
+     ...
+       int status;
+       size_t n = 37;
+
+       gsl_set_error_handler_off();
+
+       status = gsl_fft_complex_radix2_forward (data, stride, n);
+
+       if (status) {
+         if (status == GSL_EINVAL) {
+            fprintf (stderr, "invalid argument, n=%d\n", n);
+         } else {
+            fprintf (stderr, "failed, gsl_errno=%d\n",
+                             status);
+         }
+         exit (-1);
+       }
+     ...
+
+The function `gsl_fft_complex_radix2' only accepts integer lengths
+which are a power of two.  If the variable `n' is not a power of two
+then the call to the library function will return `GSL_EINVAL',
+indicating that the length argument is invalid.  The function call to
+`gsl_set_error_handler_off' stops the default error handler from
+aborting the program.  The `else' clause catches any other possible
+errors.
+
+\1f
+File: gsl-ref.info,  Node: Mathematical Functions,  Next: Complex Numbers,  Prev: Error Handling,  Up: Top
+
+4 Mathematical Functions
+************************
+
+This chapter describes basic mathematical functions.  Some of these
+functions are present in system libraries, but the alternative versions
+given here can be used as a substitute when the system functions are not
+available.
+
+   The functions and macros described in this chapter are defined in the
+header file `gsl_math.h'.
+
+* Menu:
+
+* Mathematical Constants::
+* Infinities and Not-a-number::
+* Elementary Functions::
+* Small integer powers::
+* Testing the Sign of Numbers::
+* Testing for Odd and Even Numbers::
+* Maximum and Minimum functions::
+* Approximate Comparison of Floating Point Numbers::
+
+\1f
+File: gsl-ref.info,  Node: Mathematical Constants,  Next: Infinities and Not-a-number,  Up: Mathematical Functions
+
+4.1 Mathematical Constants
+==========================
+
+The library ensures that the standard BSD mathematical constants are
+defined. For reference, here is a list of the constants:
+
+`M_E'
+     The base of exponentials, e
+
+`M_LOG2E'
+     The base-2 logarithm of e, \log_2 (e)
+
+`M_LOG10E'
+     The base-10 logarithm of e, \log_10 (e)
+
+`M_SQRT2'
+     The square root of two, \sqrt 2
+
+`M_SQRT1_2'
+     The square root of one-half, \sqrt{1/2}
+
+`M_SQRT3'
+     The square root of three, \sqrt 3
+
+`M_PI'
+     The constant pi, \pi
+
+`M_PI_2'
+     Pi divided by two, \pi/2
+
+`M_PI_4'
+     Pi divided by four, \pi/4
+
+`M_SQRTPI'
+     The square root of pi, \sqrt\pi
+
+`M_2_SQRTPI'
+     Two divided by the square root of pi, 2/\sqrt\pi
+
+`M_1_PI'
+     The reciprocal of pi, 1/\pi
+
+`M_2_PI'
+     Twice the reciprocal of pi, 2/\pi
+
+`M_LN10'
+     The natural logarithm of ten, \ln(10)
+
+`M_LN2'
+     The natural logarithm of two, \ln(2)
+
+`M_LNPI'
+     The natural logarithm of pi, \ln(\pi)
+
+`M_EULER'
+     Euler's constant, \gamma
+
+
+\1f
+File: gsl-ref.info,  Node: Infinities and Not-a-number,  Next: Elementary Functions,  Prev: Mathematical Constants,  Up: Mathematical Functions
+
+4.2 Infinities and Not-a-number
+===============================
+
+ -- Macro: GSL_POSINF
+     This macro contains the IEEE representation of positive infinity,
+     +\infty. It is computed from the expression `+1.0/0.0'.
+
+ -- Macro: GSL_NEGINF
+     This macro contains the IEEE representation of negative infinity,
+     -\infty. It is computed from the expression `-1.0/0.0'.
+
+ -- Macro: GSL_NAN
+     This macro contains the IEEE representation of the Not-a-Number
+     symbol, `NaN'. It is computed from the ratio `0.0/0.0'.
+
+ -- Function: int gsl_isnan (const double X)
+     This function returns 1 if X is not-a-number.
+
+ -- Function: int gsl_isinf (const double X)
+     This function returns +1 if X is positive infinity, -1 if X is
+     negative infinity and 0 otherwise.(1)
+
+ -- Function: int gsl_finite (const double X)
+     This function returns 1 if X is a real number, and 0 if it is
+     infinite or not-a-number.
+
+   ---------- Footnotes ----------
+
+   (1) Note that the C99 standard only requires the system `isinf'
+function to return a non-zero value, without the sign of the infinity.
+The implementation in some earlier versions of GSL used the system
+`isinf' function and may have this behavior on some platforms.
+Therefore, it is advisable to test the sign of X separately, if needed,
+rather than relying the sign of the return value from `gsl_isinf()'.
+
+\1f
+File: gsl-ref.info,  Node: Elementary Functions,  Next: Small integer powers,  Prev: Infinities and Not-a-number,  Up: Mathematical Functions
+
+4.3 Elementary Functions
+========================
+
+The following routines provide portable implementations of functions
+found in the BSD math library.  When native versions are not available
+the functions described here can be used instead.  The substitution can
+be made automatically if you use `autoconf' to compile your application
+(*note Portability functions::).
+
+ -- Function: double gsl_log1p (const double X)
+     This function computes the value of \log(1+x) in a way that is
+     accurate for small X. It provides an alternative to the BSD math
+     function `log1p(x)'.
+
+ -- Function: double gsl_expm1 (const double X)
+     This function computes the value of \exp(x)-1 in a way that is
+     accurate for small X. It provides an alternative to the BSD math
+     function `expm1(x)'.
+
+ -- Function: double gsl_hypot (const double X, const double Y)
+     This function computes the value of \sqrt{x^2 + y^2} in a way that
+     avoids overflow. It provides an alternative to the BSD math
+     function `hypot(x,y)'.
+
+ -- Function: double gsl_hypot3 (const double X, const double Y, const
+          double Z)
+     This function computes the value of \sqrt{x^2 + y^2 + z^2} in a
+     way that avoids overflow.
+
+ -- Function: double gsl_acosh (const double X)
+     This function computes the value of \arccosh(x). It provides an
+     alternative to the standard math function `acosh(x)'.
+
+ -- Function: double gsl_asinh (const double X)
+     This function computes the value of \arcsinh(x). It provides an
+     alternative to the standard math function `asinh(x)'.
+
+ -- Function: double gsl_atanh (const double X)
+     This function computes the value of \arctanh(x). It provides an
+     alternative to the standard math function `atanh(x)'.
+
+ -- Function: double gsl_ldexp (double X, int E)
+     This function computes the value of x * 2^e. It provides an
+     alternative to the standard math function `ldexp(x,e)'.
+
+ -- Function: double gsl_frexp (double X, int * E)
+     This function splits the number x into its normalized fraction f
+     and exponent e, such that x = f * 2^e and 0.5 <= f < 1. The
+     function returns f and stores the exponent in e. If x is zero,
+     both f and e are set to zero. This function provides an
+     alternative to the standard math function `frexp(x, e)'.
+
+\1f
+File: gsl-ref.info,  Node: Small integer powers,  Next: Testing the Sign of Numbers,  Prev: Elementary Functions,  Up: Mathematical Functions
+
+4.4 Small integer powers
+========================
+
+A common complaint about the standard C library is its lack of a
+function for calculating (small) integer powers.  GSL provides some
+simple functions to fill this gap.  For reasons of efficiency, these
+functions do not check for overflow or underflow conditions.
+
+ -- Function: double gsl_pow_int (double X, int N)
+ -- Function: double gsl_pow_uint (double X, unsigned int N)
+     These routines computes the power x^n for integer N.  The power is
+     computed efficiently--for example, x^8 is computed as ((x^2)^2)^2,
+     requiring only 3 multiplications.  A version of this function
+     which also computes the numerical error in the result is available
+     as `gsl_sf_pow_int_e'.
+
+ -- Function: double gsl_pow_2 (const double X)
+ -- Function: double gsl_pow_3 (const double X)
+ -- Function: double gsl_pow_4 (const double X)
+ -- Function: double gsl_pow_5 (const double X)
+ -- Function: double gsl_pow_6 (const double X)
+ -- Function: double gsl_pow_7 (const double X)
+ -- Function: double gsl_pow_8 (const double X)
+ -- Function: double gsl_pow_9 (const double X)
+     These functions can be used to compute small integer powers x^2,
+     x^3, etc. efficiently. The functions will be inlined when
+     `HAVE_INLINE' is defined, so that use of these functions should be
+     as efficient as explicitly writing the corresponding product
+     expression.
+
+     #include <gsl/gsl_math.h>
+     double y = gsl_pow_4 (3.141)  /* compute 3.141**4 */
+
+\1f
+File: gsl-ref.info,  Node: Testing the Sign of Numbers,  Next: Testing for Odd and Even Numbers,  Prev: Small integer powers,  Up: Mathematical Functions
+
+4.5 Testing the Sign of Numbers
+===============================
+
+ -- Macro: GSL_SIGN (x)
+     This macro returns the sign of X. It is defined as `((x) >= 0 ? 1
+     : -1)'. Note that with this definition the sign of zero is positive
+     (regardless of its IEEE sign bit).
+
+\1f
+File: gsl-ref.info,  Node: Testing for Odd and Even Numbers,  Next: Maximum and Minimum functions,  Prev: Testing the Sign of Numbers,  Up: Mathematical Functions
+
+4.6 Testing for Odd and Even Numbers
+====================================
+
+ -- Macro: GSL_IS_ODD (n)
+     This macro evaluates to 1 if N is odd and 0 if N is even. The
+     argument N must be of integer type.
+
+ -- Macro: GSL_IS_EVEN (n)
+     This macro is the opposite of `GSL_IS_ODD(n)'. It evaluates to 1 if
+     N is even and 0 if N is odd. The argument N must be of integer
+     type.
+
+\1f
+File: gsl-ref.info,  Node: Maximum and Minimum functions,  Next: Approximate Comparison of Floating Point Numbers,  Prev: Testing for Odd and Even Numbers,  Up: Mathematical Functions
+
+4.7 Maximum and Minimum functions
+=================================
+
+Note that the following macros perform multiple evaluations of their
+arguments, so they should not be used with arguments that have side
+effects (such as a call to a random number generator).
+
+ -- Macro: GSL_MAX (a, b)
+     This macro returns the maximum of A and B. It is defined as `((a)
+     > (b) ? (a):(b))'.
+
+ -- Macro: GSL_MIN (a, b)
+     This macro returns the minimum of A and B. It is defined as `((a)
+     < (b) ? (a):(b))'.
+
+ -- Function: extern inline double GSL_MAX_DBL (double A, double B)
+     This function returns the maximum of the double precision numbers
+     A and B using an inline function. The use of a function allows for
+     type checking of the arguments as an extra safety feature. On
+     platforms where inline functions are not available the macro
+     `GSL_MAX' will be automatically substituted.
+
+ -- Function: extern inline double GSL_MIN_DBL (double A, double B)
+     This function returns the minimum of the double precision numbers
+     A and B using an inline function. The use of a function allows for
+     type checking of the arguments as an extra safety feature. On
+     platforms where inline functions are not available the macro
+     `GSL_MIN' will be automatically substituted.
+
+ -- Function: extern inline int GSL_MAX_INT (int A, int B)
+ -- Function: extern inline int GSL_MIN_INT (int A, int B)
+     These functions return the maximum or minimum of the integers A
+     and B using an inline function.  On platforms where inline
+     functions are not available the macros `GSL_MAX' or `GSL_MIN' will
+     be automatically substituted.
+
+ -- Function: extern inline long double GSL_MAX_LDBL (long double A,
+          long double B)
+ -- Function: extern inline long double GSL_MIN_LDBL (long double A,
+          long double B)
+     These functions return the maximum or minimum of the long doubles A
+     and B using an inline function.  On platforms where inline
+     functions are not available the macros `GSL_MAX' or `GSL_MIN' will
+     be automatically substituted.
+
+\1f
+File: gsl-ref.info,  Node: Approximate Comparison of Floating Point Numbers,  Prev: Maximum and Minimum functions,  Up: Mathematical Functions
+
+4.8 Approximate Comparison of Floating Point Numbers
+====================================================
+
+It is sometimes useful to be able to compare two floating point numbers
+approximately, to allow for rounding and truncation errors.  The
+following function implements the approximate floating-point comparison
+algorithm proposed by D.E. Knuth in Section 4.2.2 of `Seminumerical
+Algorithms' (3rd edition).
+
+ -- Function: int gsl_fcmp (double X, double Y, double EPSILON)
+     This function determines whether x and y are approximately equal
+     to a relative accuracy EPSILON.
+
+     The relative accuracy is measured using an interval of size 2
+     \delta, where \delta = 2^k \epsilon and k is the maximum base-2
+     exponent of x and y as computed by the function `frexp'.
+
+     If x and y lie within this interval, they are considered
+     approximately equal and the function returns 0. Otherwise if x <
+     y, the function returns -1, or if x > y, the function returns +1.
+
+     Note that x and y are compared to relative accuracy, so this
+     function is not suitable for testing whether a value is
+     approximately zero.
+
+     The implementation is based on the package `fcmp' by T.C. Belding.
+
+\1f
+File: gsl-ref.info,  Node: Complex Numbers,  Next: Polynomials,  Prev: Mathematical Functions,  Up: Top
+
+5 Complex Numbers
+*****************
+
+The functions described in this chapter provide support for complex
+numbers.  The algorithms take care to avoid unnecessary intermediate
+underflows and overflows, allowing the functions to be evaluated over
+as much of the complex plane as possible.
+
+   For multiple-valued functions the branch cuts have been chosen to
+follow the conventions of Abramowitz and Stegun in the `Handbook of
+Mathematical Functions'. The functions return principal values which are
+the same as those in GNU Calc, which in turn are the same as those in
+`Common Lisp, The Language (Second Edition)'(1) and the HP-28/48 series
+of calculators.
+
+   The complex types are defined in the header file `gsl_complex.h',
+while the corresponding complex functions and arithmetic operations are
+defined in `gsl_complex_math.h'.
+
+* Menu:
+
+* Representation of complex numbers::
+* Properties of complex numbers::
+* Complex arithmetic operators::
+* Elementary Complex Functions::
+* Complex Trigonometric Functions::
+* Inverse Complex Trigonometric Functions::
+* Complex Hyperbolic Functions::
+* Inverse Complex Hyperbolic Functions::
+* Complex Number References and Further Reading::
+
+   ---------- Footnotes ----------
+
+   (1) Note that the first edition uses different definitions.
+
+\1f
+File: gsl-ref.info,  Node: Representation of complex numbers,  Next: Properties of complex numbers,  Up: Complex Numbers
+
+5.1 Representation of complex numbers
+=====================================
+
+Complex numbers are represented using the type `gsl_complex'. The
+internal representation of this type may vary across platforms and
+should not be accessed directly. The functions and macros described
+below allow complex numbers to be manipulated in a portable way.
+
+   For reference, the default form of the `gsl_complex' type is given
+by the following struct,
+
+     typedef struct
+     {
+       double dat[2];
+     } gsl_complex;
+
+The real and imaginary part are stored in contiguous elements of a two
+element array. This eliminates any padding between the real and
+imaginary parts, `dat[0]' and `dat[1]', allowing the struct to be
+mapped correctly onto packed complex arrays.
+
+ -- Function: gsl_complex gsl_complex_rect (double X, double Y)
+     This function uses the rectangular Cartesian components (X,Y) to
+     return the complex number z = x + i y.  An inline version of this
+     function is used when `HAVE_INLINE' is defined.
+
+ -- Function: gsl_complex gsl_complex_polar (double R, double THETA)
+     This function returns the complex number z = r \exp(i \theta) = r
+     (\cos(\theta) + i \sin(\theta)) from the polar representation
+     (R,THETA).
+
+ -- Macro: GSL_REAL (Z)
+ -- Macro: GSL_IMAG (Z)
+     These macros return the real and imaginary parts of the complex
+     number Z.
+
+ -- Macro: GSL_SET_COMPLEX (ZP, X, Y)
+     This macro uses the Cartesian components (X,Y) to set the real and
+     imaginary parts of the complex number pointed to by ZP.  For
+     example,
+
+          GSL_SET_COMPLEX(&z, 3, 4)
+
+     sets Z to be 3 + 4i.
+
+ -- Macro: GSL_SET_REAL (ZP,X)
+ -- Macro: GSL_SET_IMAG (ZP,Y)
+     These macros allow the real and imaginary parts of the complex
+     number pointed to by ZP to be set independently.
+
+\1f
+File: gsl-ref.info,  Node: Properties of complex numbers,  Next: Complex arithmetic operators,  Prev: Representation of complex numbers,  Up: Complex Numbers
+
+5.2 Properties of complex numbers
+=================================
+
+ -- Function: double gsl_complex_arg (gsl_complex Z)
+     This function returns the argument of the complex number Z,
+     \arg(z), where -\pi < \arg(z) <= \pi.
+
+ -- Function: double gsl_complex_abs (gsl_complex Z)
+     This function returns the magnitude of the complex number Z, |z|.
+
+ -- Function: double gsl_complex_abs2 (gsl_complex Z)
+     This function returns the squared magnitude of the complex number
+     Z, |z|^2.
+
+ -- Function: double gsl_complex_logabs (gsl_complex Z)
+     This function returns the natural logarithm of the magnitude of the
+     complex number Z, \log|z|.  It allows an accurate evaluation of
+     \log|z| when |z| is close to one. The direct evaluation of
+     `log(gsl_complex_abs(z))' would lead to a loss of precision in
+     this case.
+
+\1f
+File: gsl-ref.info,  Node: Complex arithmetic operators,  Next: Elementary Complex Functions,  Prev: Properties of complex numbers,  Up: Complex Numbers
+
+5.3 Complex arithmetic operators
+================================
+
+ -- Function: gsl_complex gsl_complex_add (gsl_complex A, gsl_complex B)
+     This function returns the sum of the complex numbers A and B,
+     z=a+b.
+
+ -- Function: gsl_complex gsl_complex_sub (gsl_complex A, gsl_complex B)
+     This function returns the difference of the complex numbers A and
+     B, z=a-b.
+
+ -- Function: gsl_complex gsl_complex_mul (gsl_complex A, gsl_complex B)
+     This function returns the product of the complex numbers A and B,
+     z=ab.
+
+ -- Function: gsl_complex gsl_complex_div (gsl_complex A, gsl_complex B)
+     This function returns the quotient of the complex numbers A and B,
+     z=a/b.
+
+ -- Function: gsl_complex gsl_complex_add_real (gsl_complex A, double X)
+     This function returns the sum of the complex number A and the real
+     number X, z=a+x.
+
+ -- Function: gsl_complex gsl_complex_sub_real (gsl_complex A, double X)
+     This function returns the difference of the complex number A and
+     the real number X, z=a-x.
+
+ -- Function: gsl_complex gsl_complex_mul_real (gsl_complex A, double X)
+     This function returns the product of the complex number A and the
+     real number X, z=ax.
+
+ -- Function: gsl_complex gsl_complex_div_real (gsl_complex A, double X)
+     This function returns the quotient of the complex number A and the
+     real number X, z=a/x.
+
+ -- Function: gsl_complex gsl_complex_add_imag (gsl_complex A, double Y)
+     This function returns the sum of the complex number A and the
+     imaginary number iY, z=a+iy.
+
+ -- Function: gsl_complex gsl_complex_sub_imag (gsl_complex A, double Y)
+     This function returns the difference of the complex number A and
+     the imaginary number iY, z=a-iy.
+
+ -- Function: gsl_complex gsl_complex_mul_imag (gsl_complex A, double Y)
+     This function returns the product of the complex number A and the
+     imaginary number iY, z=a*(iy).
+
+ -- Function: gsl_complex gsl_complex_div_imag (gsl_complex A, double Y)
+     This function returns the quotient of the complex number A and the
+     imaginary number iY, z=a/(iy).
+
+ -- Function: gsl_complex gsl_complex_conjugate (gsl_complex Z)
+     This function returns the complex conjugate of the complex number
+     Z, z^* = x - i y.
+
+ -- Function: gsl_complex gsl_complex_inverse (gsl_complex Z)
+     This function returns the inverse, or reciprocal, of the complex
+     number Z, 1/z = (x - i y)/(x^2 + y^2).
+
+ -- Function: gsl_complex gsl_complex_negative (gsl_complex Z)
+     This function returns the negative of the complex number Z, -z =
+     (-x) + i(-y).
+
+\1f
+File: gsl-ref.info,  Node: Elementary Complex Functions,  Next: Complex Trigonometric Functions,  Prev: Complex arithmetic operators,  Up: Complex Numbers
+
+5.4 Elementary Complex Functions
+================================
+
+ -- Function: gsl_complex gsl_complex_sqrt (gsl_complex Z)
+     This function returns the square root of the complex number Z,
+     \sqrt z. The branch cut is the negative real axis. The result
+     always lies in the right half of the complex plane.
+
+ -- Function: gsl_complex gsl_complex_sqrt_real (double X)
+     This function returns the complex square root of the real number
+     X, where X may be negative.
+
+ -- Function: gsl_complex gsl_complex_pow (gsl_complex Z, gsl_complex A)
+     The function returns the complex number Z raised to the complex
+     power A, z^a. This is computed as \exp(\log(z)*a) using complex
+     logarithms and complex exponentials.
+
+ -- Function: gsl_complex gsl_complex_pow_real (gsl_complex Z, double X)
+     This function returns the complex number Z raised to the real
+     power X, z^x.
+
+ -- Function: gsl_complex gsl_complex_exp (gsl_complex Z)
+     This function returns the complex exponential of the complex number
+     Z, \exp(z).
+
+ -- Function: gsl_complex gsl_complex_log (gsl_complex Z)
+     This function returns the complex natural logarithm (base e) of
+     the complex number Z, \log(z).  The branch cut is the negative
+     real axis.
+
+ -- Function: gsl_complex gsl_complex_log10 (gsl_complex Z)
+     This function returns the complex base-10 logarithm of the complex
+     number Z, \log_10 (z).
+
+ -- Function: gsl_complex gsl_complex_log_b (gsl_complex Z, gsl_complex
+          B)
+     This function returns the complex base-B logarithm of the complex
+     number Z, \log_b(z). This quantity is computed as the ratio
+     \log(z)/\log(b).
+
+\1f
+File: gsl-ref.info,  Node: Complex Trigonometric Functions,  Next: Inverse Complex Trigonometric Functions,  Prev: Elementary Complex Functions,  Up: Complex Numbers
+
+5.5 Complex Trigonometric Functions
+===================================
+
+ -- Function: gsl_complex gsl_complex_sin (gsl_complex Z)
+     This function returns the complex sine of the complex number Z,
+     \sin(z) = (\exp(iz) - \exp(-iz))/(2i).
+
+ -- Function: gsl_complex gsl_complex_cos (gsl_complex Z)
+     This function returns the complex cosine of the complex number Z,
+     \cos(z) = (\exp(iz) + \exp(-iz))/2.
+
+ -- Function: gsl_complex gsl_complex_tan (gsl_complex Z)
+     This function returns the complex tangent of the complex number Z,
+     \tan(z) = \sin(z)/\cos(z).
+
+ -- Function: gsl_complex gsl_complex_sec (gsl_complex Z)
+     This function returns the complex secant of the complex number Z,
+     \sec(z) = 1/\cos(z).
+
+ -- Function: gsl_complex gsl_complex_csc (gsl_complex Z)
+     This function returns the complex cosecant of the complex number Z,
+     \csc(z) = 1/\sin(z).
+
+ -- Function: gsl_complex gsl_complex_cot (gsl_complex Z)
+     This function returns the complex cotangent of the complex number
+     Z, \cot(z) = 1/\tan(z).
+
+\1f
+File: gsl-ref.info,  Node: Inverse Complex Trigonometric Functions,  Next: Complex Hyperbolic Functions,  Prev: Complex Trigonometric Functions,  Up: Complex Numbers
+
+5.6 Inverse Complex Trigonometric Functions
+===========================================
+
+ -- Function: gsl_complex gsl_complex_arcsin (gsl_complex Z)
+     This function returns the complex arcsine of the complex number Z,
+     \arcsin(z). The branch cuts are on the real axis, less than -1 and
+     greater than 1.
+
+ -- Function: gsl_complex gsl_complex_arcsin_real (double Z)
+     This function returns the complex arcsine of the real number Z,
+     \arcsin(z). For z between -1 and 1, the function returns a real
+     value in the range [-\pi/2,\pi/2]. For z less than -1 the result
+     has a real part of -\pi/2 and a positive imaginary part.  For z
+     greater than 1 the result has a real part of \pi/2 and a negative
+     imaginary part.
+
+ -- Function: gsl_complex gsl_complex_arccos (gsl_complex Z)
+     This function returns the complex arccosine of the complex number
+     Z, \arccos(z). The branch cuts are on the real axis, less than -1
+     and greater than 1.
+
+ -- Function: gsl_complex gsl_complex_arccos_real (double Z)
+     This function returns the complex arccosine of the real number Z,
+     \arccos(z). For z between -1 and 1, the function returns a real
+     value in the range [0,\pi]. For z less than -1 the result has a
+     real part of \pi and a negative imaginary part.  For z greater
+     than 1 the result is purely imaginary and positive.
+
+ -- Function: gsl_complex gsl_complex_arctan (gsl_complex Z)
+     This function returns the complex arctangent of the complex number
+     Z, \arctan(z). The branch cuts are on the imaginary axis, below -i
+     and above i.
+
+ -- Function: gsl_complex gsl_complex_arcsec (gsl_complex Z)
+     This function returns the complex arcsecant of the complex number
+     Z, \arcsec(z) = \arccos(1/z).
+
+ -- Function: gsl_complex gsl_complex_arcsec_real (double Z)
+     This function returns the complex arcsecant of the real number Z,
+     \arcsec(z) = \arccos(1/z).
+
+ -- Function: gsl_complex gsl_complex_arccsc (gsl_complex Z)
+     This function returns the complex arccosecant of the complex
+     number Z, \arccsc(z) = \arcsin(1/z).
+
+ -- Function: gsl_complex gsl_complex_arccsc_real (double Z)
+     This function returns the complex arccosecant of the real number Z,
+     \arccsc(z) = \arcsin(1/z).
+
+ -- Function: gsl_complex gsl_complex_arccot (gsl_complex Z)
+     This function returns the complex arccotangent of the complex
+     number Z, \arccot(z) = \arctan(1/z).
+
+\1f
+File: gsl-ref.info,  Node: Complex Hyperbolic Functions,  Next: Inverse Complex Hyperbolic Functions,  Prev: Inverse Complex Trigonometric Functions,  Up: Complex Numbers
+
+5.7 Complex Hyperbolic Functions
+================================
+
+ -- Function: gsl_complex gsl_complex_sinh (gsl_complex Z)
+     This function returns the complex hyperbolic sine of the complex
+     number Z, \sinh(z) = (\exp(z) - \exp(-z))/2.
+
+ -- Function: gsl_complex gsl_complex_cosh (gsl_complex Z)
+     This function returns the complex hyperbolic cosine of the complex
+     number Z, \cosh(z) = (\exp(z) + \exp(-z))/2.
+
+ -- Function: gsl_complex gsl_complex_tanh (gsl_complex Z)
+     This function returns the complex hyperbolic tangent of the
+     complex number Z, \tanh(z) = \sinh(z)/\cosh(z).
+
+ -- Function: gsl_complex gsl_complex_sech (gsl_complex Z)
+     This function returns the complex hyperbolic secant of the complex
+     number Z, \sech(z) = 1/\cosh(z).
+
+ -- Function: gsl_complex gsl_complex_csch (gsl_complex Z)
+     This function returns the complex hyperbolic cosecant of the
+     complex number Z, \csch(z) = 1/\sinh(z).
+
+ -- Function: gsl_complex gsl_complex_coth (gsl_complex Z)
+     This function returns the complex hyperbolic cotangent of the
+     complex number Z, \coth(z) = 1/\tanh(z).
+
+\1f
+File: gsl-ref.info,  Node: Inverse Complex Hyperbolic Functions,  Next: Complex Number References and Further Reading,  Prev: Complex Hyperbolic Functions,  Up: Complex Numbers
+
+5.8 Inverse Complex Hyperbolic Functions
+========================================
+
+ -- Function: gsl_complex gsl_complex_arcsinh (gsl_complex Z)
+     This function returns the complex hyperbolic arcsine of the
+     complex number Z, \arcsinh(z).  The branch cuts are on the
+     imaginary axis, below -i and above i.
+
+ -- Function: gsl_complex gsl_complex_arccosh (gsl_complex Z)
+     This function returns the complex hyperbolic arccosine of the
+     complex number Z, \arccosh(z).  The branch cut is on the real
+     axis, less than 1.  Note that in this case we use the negative
+     square root in formula 4.6.21 of Abramowitz & Stegun giving
+     \arccosh(z)=\log(z-\sqrt{z^2-1}).
+
+ -- Function: gsl_complex gsl_complex_arccosh_real (double Z)
+     This function returns the complex hyperbolic arccosine of the real
+     number Z, \arccosh(z).
+
+ -- Function: gsl_complex gsl_complex_arctanh (gsl_complex Z)
+     This function returns the complex hyperbolic arctangent of the
+     complex number Z, \arctanh(z).  The branch cuts are on the real
+     axis, less than -1 and greater than 1.
+
+ -- Function: gsl_complex gsl_complex_arctanh_real (double Z)
+     This function returns the complex hyperbolic arctangent of the real
+     number Z, \arctanh(z).
+
+ -- Function: gsl_complex gsl_complex_arcsech (gsl_complex Z)
+     This function returns the complex hyperbolic arcsecant of the
+     complex number Z, \arcsech(z) = \arccosh(1/z).
+
+ -- Function: gsl_complex gsl_complex_arccsch (gsl_complex Z)
+     This function returns the complex hyperbolic arccosecant of the
+     complex number Z, \arccsch(z) = \arcsin(1/z).
+
+ -- Function: gsl_complex gsl_complex_arccoth (gsl_complex Z)
+     This function returns the complex hyperbolic arccotangent of the
+     complex number Z, \arccoth(z) = \arctanh(1/z).
+
+\1f
+File: gsl-ref.info,  Node: Complex Number References and Further Reading,  Prev: Inverse Complex Hyperbolic Functions,  Up: Complex Numbers
+
+5.9 References and Further Reading
+==================================
+
+The implementations of the elementary and trigonometric functions are
+based on the following papers,
+
+     T. E. Hull, Thomas F. Fairgrieve, Ping Tak Peter Tang,
+     "Implementing Complex Elementary Functions Using Exception
+     Handling", `ACM Transactions on Mathematical Software', Volume 20
+     (1994), pp 215-244, Corrigenda, p553
+
+     T. E. Hull, Thomas F. Fairgrieve, Ping Tak Peter Tang,
+     "Implementing the complex arcsin and arccosine functions using
+     exception handling", `ACM Transactions on Mathematical Software',
+     Volume 23 (1997) pp 299-335
+
+The general formulas and details of branch cuts can be found in the
+following books,
+
+     Abramowitz and Stegun, `Handbook of Mathematical Functions',
+     "Circular Functions in Terms of Real and Imaginary Parts", Formulas
+     4.3.55-58, "Inverse Circular Functions in Terms of Real and
+     Imaginary Parts", Formulas 4.4.37-39, "Hyperbolic Functions in
+     Terms of Real and Imaginary Parts", Formulas 4.5.49-52, "Inverse
+     Hyperbolic Functions--relation to Inverse Circular Functions",
+     Formulas 4.6.14-19.
+
+     Dave Gillespie, `Calc Manual', Free Software Foundation, ISBN
+     1-882114-18-3
+
+\1f
+File: gsl-ref.info,  Node: Polynomials,  Next: Special Functions,  Prev: Complex Numbers,  Up: Top
+
+6 Polynomials
+*************
+
+This chapter describes functions for evaluating and solving polynomials.
+There are routines for finding real and complex roots of quadratic and
+cubic equations using analytic methods.  An iterative polynomial solver
+is also available for finding the roots of general polynomials with real
+coefficients (of any order).  The functions are declared in the header
+file `gsl_poly.h'.
+
+* Menu:
+
+* Polynomial Evaluation::
+* Divided Difference Representation of Polynomials::
+* Quadratic Equations::
+* Cubic Equations::
+* General Polynomial Equations::
+* Roots of Polynomials Examples::
+* Roots of Polynomials References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Polynomial Evaluation,  Next: Divided Difference Representation of Polynomials,  Up: Polynomials
+
+6.1 Polynomial Evaluation
+=========================
+
+The functions described here evaluate the polynomial P(x) = c[0] + c[1]
+x + c[2] x^2 + \dots + c[len-1] x^{len-1} using Horner's method for
+stability. Inline versions of these functions are used when
+`HAVE_INLINE' is defined.
+
+ -- Function: double gsl_poly_eval (const double C[], const int LEN,
+          const double X)
+     This function evaluates a polynomial with real coefficients for
+     the real variable X.
+
+ -- Function: gsl_complex gsl_poly_complex_eval (const double C[],
+          const int LEN, const gsl_complex Z)
+     This function evaluates a polynomial with real coefficients for
+     the complex variable Z.
+
+ -- Function: gsl_complex gsl_complex_poly_complex_eval (const
+          gsl_complex C[], const int LEN, const gsl_complex Z)
+     This function evaluates a polynomial with complex coefficients for
+     the complex variable Z.
+
+ -- Function: int gsl_poly_eval_derivs (const double C[], const size_t
+          LENC, const double X, double RES[], const size_t LENRES)
+     This function evaluates a polynomial and its derivatives storing
+     the results in the array RES of size LENRES.  The output array
+     contains the values of d^k P/d x^k for the specified value of X
+     starting with k = 0.
+
+\1f
+File: gsl-ref.info,  Node: Divided Difference Representation of Polynomials,  Next: Quadratic Equations,  Prev: Polynomial Evaluation,  Up: Polynomials
+
+6.2 Divided Difference Representation of Polynomials
+====================================================
+
+The functions described here manipulate polynomials stored in Newton's
+divided-difference representation.  The use of divided-differences is
+described in Abramowitz & Stegun sections 25.1.4 and 25.2.26.
+
+ -- Function: int gsl_poly_dd_init (double DD[], const double XA[],
+          const double YA[], size_t SIZE)
+     This function computes a divided-difference representation of the
+     interpolating polynomial for the points (XA, YA) stored in the
+     arrays XA and YA of length SIZE.  On output the
+     divided-differences of (XA,YA) are stored in the array DD, also of
+     length SIZE.
+
+ -- Function: double gsl_poly_dd_eval (const double DD[], const double
+          XA[], const size_t SIZE, const double X)
+     This function evaluates the polynomial stored in
+     divided-difference form in the arrays DD and XA of length SIZE at
+     the point X.  An inline version of this function is used when
+     `HAVE_INLINE' is defined.
+
+ -- Function: int gsl_poly_dd_taylor (double C[], double XP, const
+          double DD[], const double XA[], size_t SIZE, double W[])
+     This function converts the divided-difference representation of a
+     polynomial to a Taylor expansion.  The divided-difference
+     representation is supplied in the arrays DD and XA of length SIZE.
+     On output the Taylor coefficients of the polynomial expanded about
+     the point XP are stored in the array C also of length SIZE.  A
+     workspace of length SIZE must be provided in the array W.
+
+\1f
+File: gsl-ref.info,  Node: Quadratic Equations,  Next: Cubic Equations,  Prev: Divided Difference Representation of Polynomials,  Up: Polynomials
+
+6.3 Quadratic Equations
+=======================
+
+ -- Function: int gsl_poly_solve_quadratic (double A, double B, double
+          C, double * X0, double * X1)
+     This function finds the real roots of the quadratic equation,
+
+          a x^2 + b x + c = 0
+
+     The number of real roots (either zero, one or two) is returned, and
+     their locations are stored in X0 and X1.  If no real roots are
+     found then X0 and X1 are not modified.  If one real root is found
+     (i.e. if a=0) then it is stored in X0.  When two real roots are
+     found they are stored in X0 and X1 in ascending order.  The case
+     of coincident roots is not considered special.  For example
+     (x-1)^2=0 will have two roots, which happen to have exactly equal
+     values.
+
+     The number of roots found depends on the sign of the discriminant
+     b^2 - 4 a c.  This will be subject to rounding and cancellation
+     errors when computed in double precision, and will also be subject
+     to errors if the coefficients of the polynomial are inexact.
+     These errors may cause a discrete change in the number of roots.
+     However, for polynomials with small integer coefficients the
+     discriminant can always be computed exactly.
+
+
+ -- Function: int gsl_poly_complex_solve_quadratic (double A, double B,
+          double C, gsl_complex * Z0, gsl_complex * Z1)
+     This function finds the complex roots of the quadratic equation,
+
+          a z^2 + b z + c = 0
+
+     The number of complex roots is returned (either one or two) and the
+     locations of the roots are stored in Z0 and Z1.  The roots are
+     returned in ascending order, sorted first by their real components
+     and then by their imaginary components.  If only one real root is
+     found (i.e. if a=0) then it is stored in Z0.
+
+
+\1f
+File: gsl-ref.info,  Node: Cubic Equations,  Next: General Polynomial Equations,  Prev: Quadratic Equations,  Up: Polynomials
+
+6.4 Cubic Equations
+===================
+
+ -- Function: int gsl_poly_solve_cubic (double A, double B, double C,
+          double * X0, double * X1, double * X2)
+     This function finds the real roots of the cubic equation,
+
+          x^3 + a x^2 + b x + c = 0
+
+     with a leading coefficient of unity.  The number of real roots
+     (either one or three) is returned, and their locations are stored
+     in X0, X1 and X2.  If one real root is found then only X0 is
+     modified.  When three real roots are found they are stored in X0,
+     X1 and X2 in ascending order.  The case of coincident roots is not
+     considered special.  For example, the equation (x-1)^3=0 will have
+     three roots with exactly equal values.  As in the quadratic case,
+     finite precision may cause equal or closely-spaced real roots to
+     move off the real axis into the complex plane, leading to a
+     discrete change in the number of real roots.
+
+ -- Function: int gsl_poly_complex_solve_cubic (double A, double B,
+          double C, gsl_complex * Z0, gsl_complex * Z1, gsl_complex *
+          Z2)
+     This function finds the complex roots of the cubic equation,
+
+          z^3 + a z^2 + b z + c = 0
+
+     The number of complex roots is returned (always three) and the
+     locations of the roots are stored in Z0, Z1 and Z2.  The roots are
+     returned in ascending order, sorted first by their real components
+     and then by their imaginary components.
+
+
+\1f
+File: gsl-ref.info,  Node: General Polynomial Equations,  Next: Roots of Polynomials Examples,  Prev: Cubic Equations,  Up: Polynomials
+
+6.5 General Polynomial Equations
+================================
+
+The roots of polynomial equations cannot be found analytically beyond
+the special cases of the quadratic, cubic and quartic equation.  The
+algorithm described in this section uses an iterative method to find the
+approximate locations of roots of higher order polynomials.
+
+ -- Function: gsl_poly_complex_workspace *
+gsl_poly_complex_workspace_alloc (size_t N)
+     This function allocates space for a `gsl_poly_complex_workspace'
+     struct and a workspace suitable for solving a polynomial with N
+     coefficients using the routine `gsl_poly_complex_solve'.
+
+     The function returns a pointer to the newly allocated
+     `gsl_poly_complex_workspace' if no errors were detected, and a null
+     pointer in the case of error.
+
+ -- Function: void gsl_poly_complex_workspace_free
+          (gsl_poly_complex_workspace * W)
+     This function frees all the memory associated with the workspace W.
+
+ -- Function: int gsl_poly_complex_solve (const double * A, size_t N,
+          gsl_poly_complex_workspace * W, gsl_complex_packed_ptr Z)
+     This function computes the roots of the general polynomial P(x) =
+     a_0 + a_1 x + a_2 x^2 + ... + a_{n-1} x^{n-1} using balanced-QR
+     reduction of the companion matrix.  The parameter N specifies the
+     length of the coefficient array.  The coefficient of the highest
+     order term must be non-zero.  The function requires a workspace W
+     of the appropriate size.  The n-1 roots are returned in the packed
+     complex array Z of length 2(n-1), alternating real and imaginary
+     parts.
+
+     The function returns `GSL_SUCCESS' if all the roots are found. If
+     the QR reduction does not converge, the error handler is invoked
+     with an error code of `GSL_EFAILED'.  Note that due to finite
+     precision, roots of higher multiplicity are returned as a cluster
+     of simple roots with reduced accuracy.  The solution of
+     polynomials with higher-order roots requires specialized
+     algorithms that take the multiplicity structure into account (see
+     e.g. Z. Zeng, Algorithm 835, ACM Transactions on Mathematical
+     Software, Volume 30, Issue 2 (2004), pp 218-236).
+
+\1f
+File: gsl-ref.info,  Node: Roots of Polynomials Examples,  Next: Roots of Polynomials References and Further Reading,  Prev: General Polynomial Equations,  Up: Polynomials
+
+6.6 Examples
+============
+
+To demonstrate the use of the general polynomial solver we will take the
+polynomial P(x) = x^5 - 1 which has the following roots,
+
+     1, e^{2\pi i /5}, e^{4\pi i /5}, e^{6\pi i /5}, e^{8\pi i /5}
+
+The following program will find these roots.
+
+     #include <stdio.h>
+     #include <gsl/gsl_poly.h>
+
+     int
+     main (void)
+     {
+       int i;
+       /* coefficients of P(x) =  -1 + x^5  */
+       double a[6] = { -1, 0, 0, 0, 0, 1 };
+       double z[10];
+
+       gsl_poly_complex_workspace * w
+           = gsl_poly_complex_workspace_alloc (6);
+
+       gsl_poly_complex_solve (a, 6, w, z);
+
+       gsl_poly_complex_workspace_free (w);
+
+       for (i = 0; i < 5; i++)
+         {
+           printf ("z%d = %+.18f %+.18f\n",
+                   i, z[2*i], z[2*i+1]);
+         }
+
+       return 0;
+     }
+
+The output of the program is,
+
+     $ ./a.out
+     z0 = -0.809016994374947451 +0.587785252292473137
+     z1 = -0.809016994374947451 -0.587785252292473137
+     z2 = +0.309016994374947451 +0.951056516295153642
+     z3 = +0.309016994374947451 -0.951056516295153642
+     z4 = +1.000000000000000000 +0.000000000000000000
+
+which agrees with the analytic result, z_n = \exp(2 \pi n i/5).
+
+\1f
+File: gsl-ref.info,  Node: Roots of Polynomials References and Further Reading,  Prev: Roots of Polynomials Examples,  Up: Polynomials
+
+6.7 References and Further Reading
+==================================
+
+The balanced-QR method and its error analysis are described in the
+following papers,
+
+     R.S. Martin, G. Peters and J.H. Wilkinson, "The QR Algorithm for
+     Real Hessenberg Matrices", `Numerische Mathematik', 14 (1970),
+     219-231.
+
+     B.N. Parlett and C. Reinsch, "Balancing a Matrix for Calculation of
+     Eigenvalues and Eigenvectors", `Numerische Mathematik', 13 (1969),
+     293-304.
+
+     A. Edelman and H. Murakami, "Polynomial roots from companion matrix
+     eigenvalues", `Mathematics of Computation', Vol. 64, No. 210
+     (1995), 763-776.
+
+The formulas for divided differences are given in Abramowitz and Stegun,
+
+     Abramowitz and Stegun, `Handbook of Mathematical Functions',
+     Sections 25.1.4 and 25.2.26.
+
+\1f
+File: gsl-ref.info,  Node: Special Functions,  Next: Vectors and Matrices,  Prev: Polynomials,  Up: Top
+
+7 Special Functions
+*******************
+
+This chapter describes the GSL special function library.  The library
+includes routines for calculating the values of Airy functions, Bessel
+functions, Clausen functions, Coulomb wave functions, Coupling
+coefficients, the Dawson function, Debye functions, Dilogarithms,
+Elliptic integrals, Jacobi elliptic functions, Error functions,
+Exponential integrals, Fermi-Dirac functions, Gamma functions,
+Gegenbauer functions, Hypergeometric functions, Laguerre functions,
+Legendre functions and Spherical Harmonics, the Psi (Digamma) Function,
+Synchrotron functions, Transport functions, Trigonometric functions and
+Zeta functions.  Each routine also computes an estimate of the numerical
+error in the calculated value of the function.
+
+   The functions in this chapter are declared in individual header
+files, such as `gsl_sf_airy.h', `gsl_sf_bessel.h', etc.  The complete
+set of header files can be included using the file `gsl_sf.h'.
+
+* Menu:
+
+* Special Function Usage::
+* The gsl_sf_result struct::
+* Special Function Modes::
+* Airy Functions and Derivatives::
+* Bessel Functions::
+* Clausen Functions::
+* Coulomb Functions::
+* Coupling Coefficients::
+* Dawson Function::
+* Debye Functions::
+* Dilogarithm::
+* Elementary Operations::
+* Elliptic Integrals::
+* Elliptic Functions (Jacobi)::
+* Error Functions::
+* Exponential Functions::
+* Exponential Integrals::
+* Fermi-Dirac Function::
+* Gamma and Beta Functions::
+* Gegenbauer Functions::
+* Hypergeometric Functions::
+* Laguerre Functions::
+* Lambert W Functions::
+* Legendre Functions and Spherical Harmonics::
+* Logarithm and Related Functions::
+* Mathieu Functions::
+* Power Function::
+* Psi (Digamma) Function::
+* Synchrotron Functions::
+* Transport Functions::
+* Trigonometric Functions::
+* Zeta Functions::
+* Special Functions Examples::
+* Special Functions References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Special Function Usage,  Next: The gsl_sf_result struct,  Up: Special Functions
+
+7.1 Usage
+=========
+
+The special functions are available in two calling conventions, a
+"natural form" which returns the numerical value of the function and an
+"error-handling form" which returns an error code.  The two types of
+function provide alternative ways of accessing the same underlying code.
+
+   The "natural form" returns only the value of the function and can be
+used directly in mathematical expressions.  For example, the following
+function call will compute the value of the Bessel function J_0(x),
+
+     double y = gsl_sf_bessel_J0 (x);
+
+There is no way to access an error code or to estimate the error using
+this method.  To allow access to this information the alternative
+error-handling form stores the value and error in a modifiable argument,
+
+     gsl_sf_result result;
+     int status = gsl_sf_bessel_J0_e (x, &result);
+
+The error-handling functions have the suffix `_e'. The returned status
+value indicates error conditions such as overflow, underflow or loss of
+precision.  If there are no errors the error-handling functions return
+`GSL_SUCCESS'.
+
+\1f
+File: gsl-ref.info,  Node: The gsl_sf_result struct,  Next: Special Function Modes,  Prev: Special Function Usage,  Up: Special Functions
+
+7.2 The gsl_sf_result struct
+============================
+
+The error handling form of the special functions always calculate an
+error estimate along with the value of the result.  Therefore,
+structures are provided for amalgamating a value and error estimate.
+These structures are declared in the header file `gsl_sf_result.h'.
+
+   The `gsl_sf_result' struct contains value and error fields.
+
+     typedef struct
+     {
+       double val;
+       double err;
+     } gsl_sf_result;
+
+The field VAL contains the value and the field ERR contains an estimate
+of the absolute error in the value.
+
+   In some cases, an overflow or underflow can be detected and handled
+by a function.  In this case, it may be possible to return a scaling
+exponent as well as an error/value pair in order to save the result from
+exceeding the dynamic range of the built-in types.  The
+`gsl_sf_result_e10' struct contains value and error fields as well as
+an exponent field such that the actual result is obtained as `result *
+10^(e10)'.
+
+     typedef struct
+     {
+       double val;
+       double err;
+       int    e10;
+     } gsl_sf_result_e10;
+
+\1f
+File: gsl-ref.info,  Node: Special Function Modes,  Next: Airy Functions and Derivatives,  Prev: The gsl_sf_result struct,  Up: Special Functions
+
+7.3 Modes
+=========
+
+The goal of the library is to achieve double precision accuracy wherever
+possible.  However the cost of evaluating some special functions to
+double precision can be significant, particularly where very high order
+terms are required.  In these cases a `mode' argument allows the
+accuracy of the function to be reduced in order to improve performance.
+The following precision levels are available for the mode argument,
+
+`GSL_PREC_DOUBLE'
+     Double-precision, a relative accuracy of approximately 2 * 10^-16.
+
+`GSL_PREC_SINGLE'
+     Single-precision, a relative accuracy of approximately 10^-7.
+
+`GSL_PREC_APPROX'
+     Approximate values, a relative accuracy of approximately 5 * 10^-4.
+
+The approximate mode provides the fastest evaluation at the lowest
+accuracy.
+
+\1f
+File: gsl-ref.info,  Node: Airy Functions and Derivatives,  Next: Bessel Functions,  Prev: Special Function Modes,  Up: Special Functions
+
+7.4 Airy Functions and Derivatives
+==================================
+
+The Airy functions Ai(x) and Bi(x) are defined by the integral
+representations,
+
+     Ai(x) = (1/\pi) \int_0^\infty \cos((1/3) t^3 + xt) dt
+     Bi(x) = (1/\pi) \int_0^\infty (e^(-(1/3) t^3 + xt) + \sin((1/3) t^3 + xt)) dt
+
+For further information see Abramowitz & Stegun, Section 10.4. The Airy
+functions are defined in the header file `gsl_sf_airy.h'.
+
+* Menu:
+
+* Airy Functions::
+* Derivatives of Airy Functions::
+* Zeros of Airy Functions::
+* Zeros of Derivatives of Airy Functions::
+
+\1f
+File: gsl-ref.info,  Node: Airy Functions,  Next: Derivatives of Airy Functions,  Up: Airy Functions and Derivatives
+
+7.4.1 Airy Functions
+--------------------
+
+ -- Function: double gsl_sf_airy_Ai (double X, gsl_mode_t MODE)
+ -- Function: int gsl_sf_airy_Ai_e (double X, gsl_mode_t MODE,
+          gsl_sf_result * RESULT)
+     These routines compute the Airy function Ai(x) with an accuracy
+     specified by MODE.
+
+ -- Function: double gsl_sf_airy_Bi (double X, gsl_mode_t MODE)
+ -- Function: int gsl_sf_airy_Bi_e (double X, gsl_mode_t MODE,
+          gsl_sf_result * RESULT)
+     These routines compute the Airy function Bi(x) with an accuracy
+     specified by MODE.
+
+ -- Function: double gsl_sf_airy_Ai_scaled (double X, gsl_mode_t MODE)
+ -- Function: int gsl_sf_airy_Ai_scaled_e (double X, gsl_mode_t MODE,
+          gsl_sf_result * RESULT)
+     These routines compute a scaled version of the Airy function
+     S_A(x) Ai(x).  For x>0 the scaling factor S_A(x) is \exp(+(2/3)
+     x^(3/2)), and is 1 for x<0.
+
+ -- Function: double gsl_sf_airy_Bi_scaled (double X, gsl_mode_t MODE)
+ -- Function: int gsl_sf_airy_Bi_scaled_e (double X, gsl_mode_t MODE,
+          gsl_sf_result * RESULT)
+     These routines compute a scaled version of the Airy function
+     S_B(x) Bi(x).  For x>0 the scaling factor S_B(x) is exp(-(2/3)
+     x^(3/2)), and is 1 for x<0.
+
+\1f
+File: gsl-ref.info,  Node: Derivatives of Airy Functions,  Next: Zeros of Airy Functions,  Prev: Airy Functions,  Up: Airy Functions and Derivatives
+
+7.4.2 Derivatives of Airy Functions
+-----------------------------------
+
+ -- Function: double gsl_sf_airy_Ai_deriv (double X, gsl_mode_t MODE)
+ -- Function: int gsl_sf_airy_Ai_deriv_e (double X, gsl_mode_t MODE,
+          gsl_sf_result * RESULT)
+     These routines compute the Airy function derivative Ai'(x) with an
+     accuracy specified by MODE.
+
+ -- Function: double gsl_sf_airy_Bi_deriv (double X, gsl_mode_t MODE)
+ -- Function: int gsl_sf_airy_Bi_deriv_e (double X, gsl_mode_t MODE,
+          gsl_sf_result * RESULT)
+     These routines compute the Airy function derivative Bi'(x) with an
+     accuracy specified by MODE.
+
+ -- Function: double gsl_sf_airy_Ai_deriv_scaled (double X, gsl_mode_t
+          MODE)
+ -- Function: int gsl_sf_airy_Ai_deriv_scaled_e (double X, gsl_mode_t
+          MODE, gsl_sf_result * RESULT)
+     These routines compute the scaled Airy function derivative S_A(x)
+     Ai'(x).  For x>0 the scaling factor S_A(x) is \exp(+(2/3)
+     x^(3/2)), and is 1 for x<0.
+
+ -- Function: double gsl_sf_airy_Bi_deriv_scaled (double X, gsl_mode_t
+          MODE)
+ -- Function: int gsl_sf_airy_Bi_deriv_scaled_e (double X, gsl_mode_t
+          MODE, gsl_sf_result * RESULT)
+     These routines compute the scaled Airy function derivative S_B(x)
+     Bi'(x).  For x>0 the scaling factor S_B(x) is exp(-(2/3) x^(3/2)),
+     and is 1 for x<0.
+
+\1f
+File: gsl-ref.info,  Node: Zeros of Airy Functions,  Next: Zeros of Derivatives of Airy Functions,  Prev: Derivatives of Airy Functions,  Up: Airy Functions and Derivatives
+
+7.4.3 Zeros of Airy Functions
+-----------------------------
+
+ -- Function: double gsl_sf_airy_zero_Ai (unsigned int S)
+ -- Function: int gsl_sf_airy_zero_Ai_e (unsigned int S, gsl_sf_result
+          * RESULT)
+     These routines compute the location of the S-th zero of the Airy
+     function Ai(x).
+
+ -- Function: double gsl_sf_airy_zero_Bi (unsigned int S)
+ -- Function: int gsl_sf_airy_zero_Bi_e (unsigned int S, gsl_sf_result
+          * RESULT)
+     These routines compute the location of the S-th zero of the Airy
+     function Bi(x).
+
+\1f
+File: gsl-ref.info,  Node: Zeros of Derivatives of Airy Functions,  Prev: Zeros of Airy Functions,  Up: Airy Functions and Derivatives
+
+7.4.4 Zeros of Derivatives of Airy Functions
+--------------------------------------------
+
+ -- Function: double gsl_sf_airy_zero_Ai_deriv (unsigned int S)
+ -- Function: int gsl_sf_airy_zero_Ai_deriv_e (unsigned int S,
+          gsl_sf_result * RESULT)
+     These routines compute the location of the S-th zero of the Airy
+     function derivative Ai'(x).
+
+ -- Function: double gsl_sf_airy_zero_Bi_deriv (unsigned int S)
+ -- Function: int gsl_sf_airy_zero_Bi_deriv_e (unsigned int S,
+          gsl_sf_result * RESULT)
+     These routines compute the location of the S-th zero of the Airy
+     function derivative Bi'(x).
+
+\1f
+File: gsl-ref.info,  Node: Bessel Functions,  Next: Clausen Functions,  Prev: Airy Functions and Derivatives,  Up: Special Functions
+
+7.5 Bessel Functions
+====================
+
+The routines described in this section compute the Cylindrical Bessel
+functions J_n(x), Y_n(x), Modified cylindrical Bessel functions I_n(x),
+K_n(x), Spherical Bessel functions j_l(x), y_l(x), and Modified
+Spherical Bessel functions i_l(x), k_l(x).  For more information see
+Abramowitz & Stegun, Chapters 9 and 10.  The Bessel functions are
+defined in the header file `gsl_sf_bessel.h'.
+
+* Menu:
+
+* Regular Cylindrical Bessel Functions::
+* Irregular Cylindrical Bessel Functions::
+* Regular Modified Cylindrical Bessel Functions::
+* Irregular Modified Cylindrical Bessel Functions::
+* Regular Spherical Bessel Functions::
+* Irregular Spherical Bessel Functions::
+* Regular Modified Spherical Bessel Functions::
+* Irregular Modified Spherical Bessel Functions::
+* Regular Bessel Function - Fractional Order::
+* Irregular Bessel Functions - Fractional Order::
+* Regular Modified Bessel Functions - Fractional Order::
+* Irregular Modified Bessel Functions - Fractional Order::
+* Zeros of Regular Bessel Functions::
+
+\1f
+File: gsl-ref.info,  Node: Regular Cylindrical Bessel Functions,  Next: Irregular Cylindrical Bessel Functions,  Up: Bessel Functions
+
+7.5.1 Regular Cylindrical Bessel Functions
+------------------------------------------
+
+ -- Function: double gsl_sf_bessel_J0 (double X)
+ -- Function: int gsl_sf_bessel_J0_e (double X, gsl_sf_result * RESULT)
+     These routines compute the regular cylindrical Bessel function of
+     zeroth order, J_0(x).
+
+ -- Function: double gsl_sf_bessel_J1 (double X)
+ -- Function: int gsl_sf_bessel_J1_e (double X, gsl_sf_result * RESULT)
+     These routines compute the regular cylindrical Bessel function of
+     first order, J_1(x).
+
+ -- Function: double gsl_sf_bessel_Jn (int N, double X)
+ -- Function: int gsl_sf_bessel_Jn_e (int N, double X, gsl_sf_result *
+          RESULT)
+     These routines compute the regular cylindrical Bessel function of
+     order N, J_n(x).
+
+ -- Function: int gsl_sf_bessel_Jn_array (int NMIN, int NMAX, double X,
+          double RESULT_ARRAY[])
+     This routine computes the values of the regular cylindrical Bessel
+     functions J_n(x) for n from NMIN to NMAX inclusive, storing the
+     results in the array RESULT_ARRAY.  The values are computed using
+     recurrence relations for efficiency, and therefore may differ
+     slightly from the exact values.
+
+\1f
+File: gsl-ref.info,  Node: Irregular Cylindrical Bessel Functions,  Next: Regular Modified Cylindrical Bessel Functions,  Prev: Regular Cylindrical Bessel Functions,  Up: Bessel Functions
+
+7.5.2 Irregular Cylindrical Bessel Functions
+--------------------------------------------
+
+ -- Function: double gsl_sf_bessel_Y0 (double X)
+ -- Function: int gsl_sf_bessel_Y0_e (double X, gsl_sf_result * RESULT)
+     These routines compute the irregular cylindrical Bessel function
+     of zeroth order, Y_0(x), for x>0.
+
+ -- Function: double gsl_sf_bessel_Y1 (double X)
+ -- Function: int gsl_sf_bessel_Y1_e (double X, gsl_sf_result * RESULT)
+     These routines compute the irregular cylindrical Bessel function
+     of first order, Y_1(x), for x>0.
+
+ -- Function: double gsl_sf_bessel_Yn (int N, double X)
+ -- Function: int gsl_sf_bessel_Yn_e (int N, double X, gsl_sf_result *
+          RESULT)
+     These routines compute the irregular cylindrical Bessel function of
+     order N, Y_n(x), for x>0.
+
+ -- Function: int gsl_sf_bessel_Yn_array (int NMIN, int NMAX, double X,
+          double RESULT_ARRAY[])
+     This routine computes the values of the irregular cylindrical
+     Bessel functions Y_n(x) for n from NMIN to NMAX inclusive, storing
+     the results in the array RESULT_ARRAY.  The domain of the function
+     is x>0.  The values are computed using recurrence relations for
+     efficiency, and therefore may differ slightly from the exact
+     values.
+
+\1f
+File: gsl-ref.info,  Node: Regular Modified Cylindrical Bessel Functions,  Next: Irregular Modified Cylindrical Bessel Functions,  Prev: Irregular Cylindrical Bessel Functions,  Up: Bessel Functions
+
+7.5.3 Regular Modified Cylindrical Bessel Functions
+---------------------------------------------------
+
+ -- Function: double gsl_sf_bessel_I0 (double X)
+ -- Function: int gsl_sf_bessel_I0_e (double X, gsl_sf_result * RESULT)
+     These routines compute the regular modified cylindrical Bessel
+     function of zeroth order, I_0(x).
+
+ -- Function: double gsl_sf_bessel_I1 (double X)
+ -- Function: int gsl_sf_bessel_I1_e (double X, gsl_sf_result * RESULT)
+     These routines compute the regular modified cylindrical Bessel
+     function of first order, I_1(x).
+
+ -- Function: double gsl_sf_bessel_In (int N, double X)
+ -- Function: int gsl_sf_bessel_In_e (int N, double X, gsl_sf_result *
+          RESULT)
+     These routines compute the regular modified cylindrical Bessel
+     function of order N, I_n(x).
+
+ -- Function: int gsl_sf_bessel_In_array (int NMIN, int NMAX, double X,
+          double RESULT_ARRAY[])
+     This routine computes the values of the regular modified
+     cylindrical Bessel functions I_n(x) for n from NMIN to NMAX
+     inclusive, storing the results in the array RESULT_ARRAY.  The
+     start of the range NMIN must be positive or zero.  The values are
+     computed using recurrence relations for efficiency, and therefore
+     may differ slightly from the exact values.
+
+ -- Function: double gsl_sf_bessel_I0_scaled (double X)
+ -- Function: int gsl_sf_bessel_I0_scaled_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the scaled regular modified cylindrical
+     Bessel function of zeroth order \exp(-|x|) I_0(x).
+
+ -- Function: double gsl_sf_bessel_I1_scaled (double X)
+ -- Function: int gsl_sf_bessel_I1_scaled_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the scaled regular modified cylindrical
+     Bessel function of first order \exp(-|x|) I_1(x).
+
+ -- Function: double gsl_sf_bessel_In_scaled (int N, double X)
+ -- Function: int gsl_sf_bessel_In_scaled_e (int N, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the scaled regular modified cylindrical
+     Bessel function of order N, \exp(-|x|) I_n(x)
+
+ -- Function: int gsl_sf_bessel_In_scaled_array (int NMIN, int NMAX,
+          double X, double RESULT_ARRAY[])
+     This routine computes the values of the scaled regular cylindrical
+     Bessel functions \exp(-|x|) I_n(x) for n from NMIN to NMAX
+     inclusive, storing the results in the array RESULT_ARRAY. The
+     start of the range NMIN must be positive or zero.  The values are
+     computed using recurrence relations for efficiency, and therefore
+     may differ slightly from the exact values.
+
+\1f
+File: gsl-ref.info,  Node: Irregular Modified Cylindrical Bessel Functions,  Next: Regular Spherical Bessel Functions,  Prev: Regular Modified Cylindrical Bessel Functions,  Up: Bessel Functions
+
+7.5.4 Irregular Modified Cylindrical Bessel Functions
+-----------------------------------------------------
+
+ -- Function: double gsl_sf_bessel_K0 (double X)
+ -- Function: int gsl_sf_bessel_K0_e (double X, gsl_sf_result * RESULT)
+     These routines compute the irregular modified cylindrical Bessel
+     function of zeroth order, K_0(x), for x > 0.
+
+ -- Function: double gsl_sf_bessel_K1 (double X)
+ -- Function: int gsl_sf_bessel_K1_e (double X, gsl_sf_result * RESULT)
+     These routines compute the irregular modified cylindrical Bessel
+     function of first order, K_1(x), for x > 0.
+
+ -- Function: double gsl_sf_bessel_Kn (int N, double X)
+ -- Function: int gsl_sf_bessel_Kn_e (int N, double X, gsl_sf_result *
+          RESULT)
+     These routines compute the irregular modified cylindrical Bessel
+     function of order N, K_n(x), for x > 0.
+
+ -- Function: int gsl_sf_bessel_Kn_array (int NMIN, int NMAX, double X,
+          double RESULT_ARRAY[])
+     This routine computes the values of the irregular modified
+     cylindrical Bessel functions K_n(x) for n from NMIN to NMAX
+     inclusive, storing the results in the array RESULT_ARRAY. The
+     start of the range NMIN must be positive or zero. The domain of
+     the function is x>0. The values are computed using recurrence
+     relations for efficiency, and therefore may differ slightly from
+     the exact values.
+
+ -- Function: double gsl_sf_bessel_K0_scaled (double X)
+ -- Function: int gsl_sf_bessel_K0_scaled_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the scaled irregular modified cylindrical
+     Bessel function of zeroth order \exp(x) K_0(x) for x>0.
+
+ -- Function: double gsl_sf_bessel_K1_scaled (double X)
+ -- Function: int gsl_sf_bessel_K1_scaled_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the scaled irregular modified cylindrical
+     Bessel function of first order \exp(x) K_1(x) for x>0.
+
+ -- Function: double gsl_sf_bessel_Kn_scaled (int N, double X)
+ -- Function: int gsl_sf_bessel_Kn_scaled_e (int N, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the scaled irregular modified cylindrical
+     Bessel function of order N, \exp(x) K_n(x), for x>0.
+
+ -- Function: int gsl_sf_bessel_Kn_scaled_array (int NMIN, int NMAX,
+          double X, double RESULT_ARRAY[])
+     This routine computes the values of the scaled irregular
+     cylindrical Bessel functions \exp(x) K_n(x) for n from NMIN to
+     NMAX inclusive, storing the results in the array RESULT_ARRAY. The
+     start of the range NMIN must be positive or zero.  The domain of
+     the function is x>0. The values are computed using recurrence
+     relations for efficiency, and therefore may differ slightly from
+     the exact values.
+
+\1f
+File: gsl-ref.info,  Node: Regular Spherical Bessel Functions,  Next: Irregular Spherical Bessel Functions,  Prev: Irregular Modified Cylindrical Bessel Functions,  Up: Bessel Functions
+
+7.5.5 Regular Spherical Bessel Functions
+----------------------------------------
+
+ -- Function: double gsl_sf_bessel_j0 (double X)
+ -- Function: int gsl_sf_bessel_j0_e (double X, gsl_sf_result * RESULT)
+     These routines compute the regular spherical Bessel function of
+     zeroth order, j_0(x) = \sin(x)/x.
+
+ -- Function: double gsl_sf_bessel_j1 (double X)
+ -- Function: int gsl_sf_bessel_j1_e (double X, gsl_sf_result * RESULT)
+     These routines compute the regular spherical Bessel function of
+     first order, j_1(x) = (\sin(x)/x - \cos(x))/x.
+
+ -- Function: double gsl_sf_bessel_j2 (double X)
+ -- Function: int gsl_sf_bessel_j2_e (double X, gsl_sf_result * RESULT)
+     These routines compute the regular spherical Bessel function of
+     second order, j_2(x) = ((3/x^2 - 1)\sin(x) - 3\cos(x)/x)/x.
+
+ -- Function: double gsl_sf_bessel_jl (int L, double X)
+ -- Function: int gsl_sf_bessel_jl_e (int L, double X, gsl_sf_result *
+          RESULT)
+     These routines compute the regular spherical Bessel function of
+     order L, j_l(x), for l >= 0 and x >= 0.
+
+ -- Function: int gsl_sf_bessel_jl_array (int LMAX, double X, double
+          RESULT_ARRAY[])
+     This routine computes the values of the regular spherical Bessel
+     functions j_l(x) for l from 0 to LMAX inclusive  for lmax >= 0 and
+     x >= 0, storing the results in the array RESULT_ARRAY.  The values
+     are computed using recurrence relations for efficiency, and
+     therefore may differ slightly from the exact values.
+
+ -- Function: int gsl_sf_bessel_jl_steed_array (int LMAX, double X,
+          double * RESULT_ARRAY)
+     This routine uses Steed's method to compute the values of the
+     regular spherical Bessel functions j_l(x) for l from 0 to LMAX
+     inclusive for lmax >= 0 and x >= 0, storing the results in the
+     array RESULT_ARRAY.  The Steed/Barnett algorithm is described in
+     `Comp. Phys. Comm.' 21, 297 (1981).  Steed's method is more stable
+     than the recurrence used in the other functions but is also slower.
+
+\1f
+File: gsl-ref.info,  Node: Irregular Spherical Bessel Functions,  Next: Regular Modified Spherical Bessel Functions,  Prev: Regular Spherical Bessel Functions,  Up: Bessel Functions
+
+7.5.6 Irregular Spherical Bessel Functions
+------------------------------------------
+
+ -- Function: double gsl_sf_bessel_y0 (double X)
+ -- Function: int gsl_sf_bessel_y0_e (double X, gsl_sf_result * RESULT)
+     These routines compute the irregular spherical Bessel function of
+     zeroth order, y_0(x) = -\cos(x)/x.
+
+ -- Function: double gsl_sf_bessel_y1 (double X)
+ -- Function: int gsl_sf_bessel_y1_e (double X, gsl_sf_result * RESULT)
+     These routines compute the irregular spherical Bessel function of
+     first order, y_1(x) = -(\cos(x)/x + \sin(x))/x.
+
+ -- Function: double gsl_sf_bessel_y2 (double X)
+ -- Function: int gsl_sf_bessel_y2_e (double X, gsl_sf_result * RESULT)
+     These routines compute the irregular spherical Bessel function of
+     second order, y_2(x) = (-3/x^3 + 1/x)\cos(x) - (3/x^2)\sin(x).
+
+ -- Function: double gsl_sf_bessel_yl (int L, double X)
+ -- Function: int gsl_sf_bessel_yl_e (int L, double X, gsl_sf_result *
+          RESULT)
+     These routines compute the irregular spherical Bessel function of
+     order L, y_l(x), for l >= 0.
+
+ -- Function: int gsl_sf_bessel_yl_array (int LMAX, double X, double
+          RESULT_ARRAY[])
+     This routine computes the values of the irregular spherical Bessel
+     functions y_l(x) for l from 0 to LMAX inclusive  for lmax >= 0,
+     storing the results in the array RESULT_ARRAY.  The values are
+     computed using recurrence relations for efficiency, and therefore
+     may differ slightly from the exact values.
+
+\1f
+File: gsl-ref.info,  Node: Regular Modified Spherical Bessel Functions,  Next: Irregular Modified Spherical Bessel Functions,  Prev: Irregular Spherical Bessel Functions,  Up: Bessel Functions
+
+7.5.7 Regular Modified Spherical Bessel Functions
+-------------------------------------------------
+
+The regular modified spherical Bessel functions i_l(x) are related to
+the modified Bessel functions of fractional order, i_l(x) =
+\sqrt{\pi/(2x)} I_{l+1/2}(x)
+
+ -- Function: double gsl_sf_bessel_i0_scaled (double X)
+ -- Function: int gsl_sf_bessel_i0_scaled_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the scaled regular modified spherical Bessel
+     function of zeroth order, \exp(-|x|) i_0(x).
+
+ -- Function: double gsl_sf_bessel_i1_scaled (double X)
+ -- Function: int gsl_sf_bessel_i1_scaled_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the scaled regular modified spherical Bessel
+     function of first order, \exp(-|x|) i_1(x).
+
+ -- Function: double gsl_sf_bessel_i2_scaled (double X)
+ -- Function: int gsl_sf_bessel_i2_scaled_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the scaled regular modified spherical Bessel
+     function of second order,  \exp(-|x|) i_2(x)
+
+ -- Function: double gsl_sf_bessel_il_scaled (int L, double X)
+ -- Function: int gsl_sf_bessel_il_scaled_e (int L, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the scaled regular modified spherical Bessel
+     function of order L,  \exp(-|x|) i_l(x)
+
+ -- Function: int gsl_sf_bessel_il_scaled_array (int LMAX, double X,
+          double RESULT_ARRAY[])
+     This routine computes the values of the scaled regular modified
+     cylindrical Bessel functions \exp(-|x|) i_l(x) for l from 0 to
+     LMAX inclusive for lmax >= 0, storing the results in the array
+     RESULT_ARRAY.  The values are computed using recurrence relations
+     for efficiency, and therefore may differ slightly from the exact
+     values.
+
+\1f
+File: gsl-ref.info,  Node: Irregular Modified Spherical Bessel Functions,  Next: Regular Bessel Function - Fractional Order,  Prev: Regular Modified Spherical Bessel Functions,  Up: Bessel Functions
+
+7.5.8 Irregular Modified Spherical Bessel Functions
+---------------------------------------------------
+
+The irregular modified spherical Bessel functions k_l(x) are related to
+the irregular modified Bessel functions of fractional order, k_l(x) =
+\sqrt{\pi/(2x)} K_{l+1/2}(x).
+
+ -- Function: double gsl_sf_bessel_k0_scaled (double X)
+ -- Function: int gsl_sf_bessel_k0_scaled_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the scaled irregular modified spherical
+     Bessel function of zeroth order, \exp(x) k_0(x), for x>0.
+
+ -- Function: double gsl_sf_bessel_k1_scaled (double X)
+ -- Function: int gsl_sf_bessel_k1_scaled_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the scaled irregular modified spherical
+     Bessel function of first order, \exp(x) k_1(x), for x>0.
+
+ -- Function: double gsl_sf_bessel_k2_scaled (double X)
+ -- Function: int gsl_sf_bessel_k2_scaled_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the scaled irregular modified spherical
+     Bessel function of second order, \exp(x) k_2(x), for x>0.
+
+ -- Function: double gsl_sf_bessel_kl_scaled (int L, double X)
+ -- Function: int gsl_sf_bessel_kl_scaled_e (int L, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the scaled irregular modified spherical
+     Bessel function of order L, \exp(x) k_l(x), for x>0.
+
+ -- Function: int gsl_sf_bessel_kl_scaled_array (int LMAX, double X,
+          double RESULT_ARRAY[])
+     This routine computes the values of the scaled irregular modified
+     spherical Bessel functions \exp(x) k_l(x) for l from 0 to LMAX
+     inclusive for lmax >= 0 and x>0, storing the results in the array
+     RESULT_ARRAY.  The values are computed using recurrence relations
+     for efficiency, and therefore may differ slightly from the exact
+     values.
+
+\1f
+File: gsl-ref.info,  Node: Regular Bessel Function - Fractional Order,  Next: Irregular Bessel Functions - Fractional Order,  Prev: Irregular Modified Spherical Bessel Functions,  Up: Bessel Functions
+
+7.5.9 Regular Bessel Function--Fractional Order
+-----------------------------------------------
+
+ -- Function: double gsl_sf_bessel_Jnu (double NU, double X)
+ -- Function: int gsl_sf_bessel_Jnu_e (double NU, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the regular cylindrical Bessel function of
+     fractional order \nu, J_\nu(x).
+
+ -- Function: int gsl_sf_bessel_sequence_Jnu_e (double NU, gsl_mode_t
+          MODE, size_t SIZE, double V[])
+     This function computes the regular cylindrical Bessel function of
+     fractional order \nu, J_\nu(x), evaluated at a series of x values.
+     The array V of length SIZE contains the x values.  They are
+     assumed to be strictly ordered and positive.  The array is
+     over-written with the values of J_\nu(x_i).
+
+\1f
+File: gsl-ref.info,  Node: Irregular Bessel Functions - Fractional Order,  Next: Regular Modified Bessel Functions - Fractional Order,  Prev: Regular Bessel Function - Fractional Order,  Up: Bessel Functions
+
+7.5.10 Irregular Bessel Functions--Fractional Order
+---------------------------------------------------
+
+ -- Function: double gsl_sf_bessel_Ynu (double NU, double X)
+ -- Function: int gsl_sf_bessel_Ynu_e (double NU, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the irregular cylindrical Bessel function of
+     fractional order \nu, Y_\nu(x).
+
+\1f
+File: gsl-ref.info,  Node: Regular Modified Bessel Functions - Fractional Order,  Next: Irregular Modified Bessel Functions - Fractional Order,  Prev: Irregular Bessel Functions - Fractional Order,  Up: Bessel Functions
+
+7.5.11 Regular Modified Bessel Functions--Fractional Order
+----------------------------------------------------------
+
+ -- Function: double gsl_sf_bessel_Inu (double NU, double X)
+ -- Function: int gsl_sf_bessel_Inu_e (double NU, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the regular modified Bessel function of
+     fractional order \nu, I_\nu(x) for x>0, \nu>0.
+
+ -- Function: double gsl_sf_bessel_Inu_scaled (double NU, double X)
+ -- Function: int gsl_sf_bessel_Inu_scaled_e (double NU, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the scaled regular modified Bessel function
+     of fractional order \nu, \exp(-|x|)I_\nu(x) for x>0, \nu>0.
+
+\1f
+File: gsl-ref.info,  Node: Irregular Modified Bessel Functions - Fractional Order,  Next: Zeros of Regular Bessel Functions,  Prev: Regular Modified Bessel Functions - Fractional Order,  Up: Bessel Functions
+
+7.5.12 Irregular Modified Bessel Functions--Fractional Order
+------------------------------------------------------------
+
+ -- Function: double gsl_sf_bessel_Knu (double NU, double X)
+ -- Function: int gsl_sf_bessel_Knu_e (double NU, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the irregular modified Bessel function of
+     fractional order \nu, K_\nu(x) for x>0, \nu>0.
+
+ -- Function: double gsl_sf_bessel_lnKnu (double NU, double X)
+ -- Function: int gsl_sf_bessel_lnKnu_e (double NU, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the logarithm of the irregular modified
+     Bessel function of fractional order \nu, \ln(K_\nu(x)) for x>0,
+     \nu>0.
+
+ -- Function: double gsl_sf_bessel_Knu_scaled (double NU, double X)
+ -- Function: int gsl_sf_bessel_Knu_scaled_e (double NU, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the scaled irregular modified Bessel
+     function of fractional order \nu, \exp(+|x|) K_\nu(x) for x>0,
+     \nu>0.
+
+\1f
+File: gsl-ref.info,  Node: Zeros of Regular Bessel Functions,  Prev: Irregular Modified Bessel Functions - Fractional Order,  Up: Bessel Functions
+
+7.5.13 Zeros of Regular Bessel Functions
+----------------------------------------
+
+ -- Function: double gsl_sf_bessel_zero_J0 (unsigned int S)
+ -- Function: int gsl_sf_bessel_zero_J0_e (unsigned int S,
+          gsl_sf_result * RESULT)
+     These routines compute the location of the S-th positive zero of
+     the Bessel function J_0(x).
+
+ -- Function: double gsl_sf_bessel_zero_J1 (unsigned int S)
+ -- Function: int gsl_sf_bessel_zero_J1_e (unsigned int S,
+          gsl_sf_result * RESULT)
+     These routines compute the location of the S-th positive zero of
+     the Bessel function J_1(x).
+
+ -- Function: double gsl_sf_bessel_zero_Jnu (double NU, unsigned int S)
+ -- Function: int gsl_sf_bessel_zero_Jnu_e (double NU, unsigned int S,
+          gsl_sf_result * RESULT)
+     These routines compute the location of the S-th positive zero of
+     the Bessel function J_\nu(x).  The current implementation does not
+     support negative values of NU.
+
+\1f
+File: gsl-ref.info,  Node: Clausen Functions,  Next: Coulomb Functions,  Prev: Bessel Functions,  Up: Special Functions
+
+7.6 Clausen Functions
+=====================
+
+The Clausen function is defined by the following integral,
+
+     Cl_2(x) = - \int_0^x dt \log(2 \sin(t/2))
+
+It is related to the dilogarithm by Cl_2(\theta) = \Im
+Li_2(\exp(i\theta)).  The Clausen functions are declared in the header
+file `gsl_sf_clausen.h'.
+
+ -- Function: double gsl_sf_clausen (double X)
+ -- Function: int gsl_sf_clausen_e (double X, gsl_sf_result * RESULT)
+     These routines compute the Clausen integral Cl_2(x).
+
+\1f
+File: gsl-ref.info,  Node: Coulomb Functions,  Next: Coupling Coefficients,  Prev: Clausen Functions,  Up: Special Functions
+
+7.7 Coulomb Functions
+=====================
+
+The prototypes of the Coulomb functions are declared in the header file
+`gsl_sf_coulomb.h'.  Both bound state and scattering solutions are
+available.
+
+* Menu:
+
+* Normalized Hydrogenic Bound States::
+* Coulomb Wave Functions::
+* Coulomb Wave Function Normalization Constant::
+
+\1f
+File: gsl-ref.info,  Node: Normalized Hydrogenic Bound States,  Next: Coulomb Wave Functions,  Up: Coulomb Functions
+
+7.7.1 Normalized Hydrogenic Bound States
+----------------------------------------
+
+ -- Function: double gsl_sf_hydrogenicR_1 (double Z, double R)
+ -- Function: int gsl_sf_hydrogenicR_1_e (double Z, double R,
+          gsl_sf_result * RESULT)
+     These routines compute the lowest-order normalized hydrogenic bound
+     state radial wavefunction R_1 := 2Z \sqrt{Z} \exp(-Z r).
+
+ -- Function: double gsl_sf_hydrogenicR (int N, int L, double Z, double
+          R)
+ -- Function: int gsl_sf_hydrogenicR_e (int N, int L, double Z, double
+          R, gsl_sf_result * RESULT)
+     These routines compute the N-th normalized hydrogenic bound state
+     radial wavefunction,
+
+          R_n := 2 (Z^{3/2}/n^2) \sqrt{(n-l-1)!/(n+l)!} \exp(-Z r/n) (2Zr/n)^l
+                    L^{2l+1}_{n-l-1}(2Zr/n).
+
+     where L^a_b(x) is the generalized Laguerre polynomial (*note
+     Laguerre Functions::).  The normalization is chosen such that the
+     wavefunction \psi is given by \psi(n,l,r) = R_n Y_{lm}.
+
+\1f
+File: gsl-ref.info,  Node: Coulomb Wave Functions,  Next: Coulomb Wave Function Normalization Constant,  Prev: Normalized Hydrogenic Bound States,  Up: Coulomb Functions
+
+7.7.2 Coulomb Wave Functions
+----------------------------
+
+The Coulomb wave functions F_L(\eta,x), G_L(\eta,x) are described in
+Abramowitz & Stegun, Chapter 14.  Because there can be a large dynamic
+range of values for these functions, overflows are handled gracefully.
+If an overflow occurs, `GSL_EOVRFLW' is signalled and exponent(s) are
+returned through the modifiable parameters EXP_F, EXP_G. The full
+solution can be reconstructed from the following relations,
+
+     F_L(eta,x)  =  fc[k_L] * exp(exp_F)
+     G_L(eta,x)  =  gc[k_L] * exp(exp_G)
+
+     F_L'(eta,x) = fcp[k_L] * exp(exp_F)
+     G_L'(eta,x) = gcp[k_L] * exp(exp_G)
+
+
+ -- Function: int gsl_sf_coulomb_wave_FG_e (double ETA, double X,
+          double L_F, int K, gsl_sf_result * F, gsl_sf_result * FP,
+          gsl_sf_result * G, gsl_sf_result * GP, double * EXP_F, double
+          * EXP_G)
+     This function computes the Coulomb wave functions F_L(\eta,x),
+     G_{L-k}(\eta,x) and their derivatives F'_L(\eta,x),
+     G'_{L-k}(\eta,x) with respect to x.  The parameters are restricted
+     to L, L-k > -1/2, x > 0 and integer k.  Note that L itself is not
+     restricted to being an integer. The results are stored in the
+     parameters F, G for the function values and FP, GP for the
+     derivative values.  If an overflow occurs, `GSL_EOVRFLW' is
+     returned and scaling exponents are stored in the modifiable
+     parameters EXP_F, EXP_G.
+
+ -- Function: int gsl_sf_coulomb_wave_F_array (double L_MIN, int KMAX,
+          double ETA, double X, double FC_ARRAY[], double * F_EXPONENT)
+     This function computes the Coulomb wave function F_L(\eta,x) for L
+     = Lmin \dots Lmin + kmax, storing the results in FC_ARRAY.  In the
+     case of overflow the exponent is stored in F_EXPONENT.
+
+ -- Function: int gsl_sf_coulomb_wave_FG_array (double L_MIN, int KMAX,
+          double ETA, double X, double FC_ARRAY[], double GC_ARRAY[],
+          double * F_EXPONENT, double * G_EXPONENT)
+     This function computes the functions F_L(\eta,x), G_L(\eta,x) for
+     L = Lmin \dots Lmin + kmax storing the results in FC_ARRAY and
+     GC_ARRAY.  In the case of overflow the exponents are stored in
+     F_EXPONENT and G_EXPONENT.
+
+ -- Function: int gsl_sf_coulomb_wave_FGp_array (double L_MIN, int
+          KMAX, double ETA, double X, double FC_ARRAY[], double
+          FCP_ARRAY[], double GC_ARRAY[], double GCP_ARRAY[], double *
+          F_EXPONENT, double * G_EXPONENT)
+     This function computes the functions F_L(\eta,x), G_L(\eta,x) and
+     their derivatives F'_L(\eta,x), G'_L(\eta,x) for L = Lmin \dots
+     Lmin + kmax storing the results in FC_ARRAY, GC_ARRAY, FCP_ARRAY
+     and GCP_ARRAY.  In the case of overflow the exponents are stored
+     in F_EXPONENT and G_EXPONENT.
+
+ -- Function: int gsl_sf_coulomb_wave_sphF_array (double L_MIN, int
+          KMAX, double ETA, double X, double FC_ARRAY[], double
+          F_EXPONENT[])
+     This function computes the Coulomb wave function divided by the
+     argument F_L(\eta, x)/x for L = Lmin \dots Lmin + kmax, storing the
+     results in FC_ARRAY.  In the case of overflow the exponent is
+     stored in F_EXPONENT. This function reduces to spherical Bessel
+     functions in the limit \eta \to 0.
+
+\1f
+File: gsl-ref.info,  Node: Coulomb Wave Function Normalization Constant,  Prev: Coulomb Wave Functions,  Up: Coulomb Functions
+
+7.7.3 Coulomb Wave Function Normalization Constant
+--------------------------------------------------
+
+The Coulomb wave function normalization constant is defined in
+Abramowitz 14.1.7.
+
+ -- Function: int gsl_sf_coulomb_CL_e (double L, double ETA,
+          gsl_sf_result * RESULT)
+     This function computes the Coulomb wave function normalization
+     constant C_L(\eta) for L > -1.
+
+ -- Function: int gsl_sf_coulomb_CL_array (double LMIN, int KMAX,
+          double ETA, double CL[])
+     This function computes the Coulomb wave function normalization
+     constant C_L(\eta) for L = Lmin \dots Lmin + kmax, Lmin > -1.
+
+\1f
+File: gsl-ref.info,  Node: Coupling Coefficients,  Next: Dawson Function,  Prev: Coulomb Functions,  Up: Special Functions
+
+7.8 Coupling Coefficients
+=========================
+
+The Wigner 3-j, 6-j and 9-j symbols give the coupling coefficients for
+combined angular momentum vectors.  Since the arguments of the standard
+coupling coefficient functions are integer or half-integer, the
+arguments of the following functions are, by convention, integers equal
+to twice the actual spin value.  For information on the 3-j coefficients
+see Abramowitz & Stegun, Section 27.9.  The functions described in this
+section are declared in the header file `gsl_sf_coupling.h'.
+
+* Menu:
+
+* 3-j Symbols::
+* 6-j Symbols::
+* 9-j Symbols::
+
+\1f
+File: gsl-ref.info,  Node: 3-j Symbols,  Next: 6-j Symbols,  Up: Coupling Coefficients
+
+7.8.1 3-j Symbols
+-----------------
+
+ -- Function: double gsl_sf_coupling_3j (int TWO_JA, int TWO_JB, int
+          TWO_JC, int TWO_MA, int TWO_MB, int TWO_MC)
+ -- Function: int gsl_sf_coupling_3j_e (int TWO_JA, int TWO_JB, int
+          TWO_JC, int TWO_MA, int TWO_MB, int TWO_MC, gsl_sf_result *
+          RESULT)
+     These routines compute the Wigner 3-j coefficient,
+
+          (ja jb jc
+           ma mb mc)
+
+     where the arguments are given in half-integer units, ja =
+     TWO_JA/2, ma = TWO_MA/2, etc.
+
+\1f
+File: gsl-ref.info,  Node: 6-j Symbols,  Next: 9-j Symbols,  Prev: 3-j Symbols,  Up: Coupling Coefficients
+
+7.8.2 6-j Symbols
+-----------------
+
+ -- Function: double gsl_sf_coupling_6j (int TWO_JA, int TWO_JB, int
+          TWO_JC, int TWO_JD, int TWO_JE, int TWO_JF)
+ -- Function: int gsl_sf_coupling_6j_e (int TWO_JA, int TWO_JB, int
+          TWO_JC, int TWO_JD, int TWO_JE, int TWO_JF, gsl_sf_result *
+          RESULT)
+     These routines compute the Wigner 6-j coefficient,
+
+          {ja jb jc
+           jd je jf}
+
+     where the arguments are given in half-integer units, ja =
+     TWO_JA/2, ma = TWO_MA/2, etc.
+
+\1f
+File: gsl-ref.info,  Node: 9-j Symbols,  Prev: 6-j Symbols,  Up: Coupling Coefficients
+
+7.8.3 9-j Symbols
+-----------------
+
+ -- Function: double gsl_sf_coupling_9j (int TWO_JA, int TWO_JB, int
+          TWO_JC, int TWO_JD, int TWO_JE, int TWO_JF, int TWO_JG, int
+          TWO_JH, int TWO_JI)
+ -- Function: int gsl_sf_coupling_9j_e (int TWO_JA, int TWO_JB, int
+          TWO_JC, int TWO_JD, int TWO_JE, int TWO_JF, int TWO_JG, int
+          TWO_JH, int TWO_JI, gsl_sf_result * RESULT)
+     These routines compute the Wigner 9-j coefficient,
+
+          {ja jb jc
+           jd je jf
+           jg jh ji}
+
+     where the arguments are given in half-integer units, ja =
+     TWO_JA/2, ma = TWO_MA/2, etc.
+
+\1f
+File: gsl-ref.info,  Node: Dawson Function,  Next: Debye Functions,  Prev: Coupling Coefficients,  Up: Special Functions
+
+7.9 Dawson Function
+===================
+
+The Dawson integral is defined by \exp(-x^2) \int_0^x dt \exp(t^2).  A
+table of Dawson's integral can be found in Abramowitz & Stegun, Table
+7.5.  The Dawson functions are declared in the header file
+`gsl_sf_dawson.h'.
+
+ -- Function: double gsl_sf_dawson (double X)
+ -- Function: int gsl_sf_dawson_e (double X, gsl_sf_result * RESULT)
+     These routines compute the value of Dawson's integral for X.
+
+\1f
+File: gsl-ref.info,  Node: Debye Functions,  Next: Dilogarithm,  Prev: Dawson Function,  Up: Special Functions
+
+7.10 Debye Functions
+====================
+
+The Debye functions D_n(x) are defined by the following integral,
+
+     D_n(x) = n/x^n \int_0^x dt (t^n/(e^t - 1))
+
+For further information see Abramowitz & Stegun, Section 27.1.  The
+Debye functions are declared in the header file `gsl_sf_debye.h'.
+
+ -- Function: double gsl_sf_debye_1 (double X)
+ -- Function: int gsl_sf_debye_1_e (double X, gsl_sf_result * RESULT)
+     These routines compute the first-order Debye function D_1(x) =
+     (1/x) \int_0^x dt (t/(e^t - 1)).
+
+ -- Function: double gsl_sf_debye_2 (double X)
+ -- Function: int gsl_sf_debye_2_e (double X, gsl_sf_result * RESULT)
+     These routines compute the second-order Debye function D_2(x) =
+     (2/x^2) \int_0^x dt (t^2/(e^t - 1)).
+
+ -- Function: double gsl_sf_debye_3 (double X)
+ -- Function: int gsl_sf_debye_3_e (double X, gsl_sf_result * RESULT)
+     These routines compute the third-order Debye function D_3(x) =
+     (3/x^3) \int_0^x dt (t^3/(e^t - 1)).
+
+ -- Function: double gsl_sf_debye_4 (double X)
+ -- Function: int gsl_sf_debye_4_e (double X, gsl_sf_result * RESULT)
+     These routines compute the fourth-order Debye function D_4(x) =
+     (4/x^4) \int_0^x dt (t^4/(e^t - 1)).
+
+ -- Function: double gsl_sf_debye_5 (double X)
+ -- Function: int gsl_sf_debye_5_e (double X, gsl_sf_result * RESULT)
+     These routines compute the fifth-order Debye function D_5(x) =
+     (5/x^5) \int_0^x dt (t^5/(e^t - 1)).
+
+ -- Function: double gsl_sf_debye_6 (double X)
+ -- Function: int gsl_sf_debye_6_e (double X, gsl_sf_result * RESULT)
+     These routines compute the sixth-order Debye function D_6(x) =
+     (6/x^6) \int_0^x dt (t^6/(e^t - 1)).
+
+\1f
+File: gsl-ref.info,  Node: Dilogarithm,  Next: Elementary Operations,  Prev: Debye Functions,  Up: Special Functions
+
+7.11 Dilogarithm
+================
+
+The functions described in this section are declared in the header file
+`gsl_sf_dilog.h'.
+
+* Menu:
+
+* Real Argument::
+* Complex Argument::
+
+\1f
+File: gsl-ref.info,  Node: Real Argument,  Next: Complex Argument,  Up: Dilogarithm
+
+7.11.1 Real Argument
+--------------------
+
+ -- Function: double gsl_sf_dilog (double X)
+ -- Function: int gsl_sf_dilog_e (double X, gsl_sf_result * RESULT)
+     These routines compute the dilogarithm for a real argument. In
+     Lewin's notation this is Li_2(x), the real part of the dilogarithm
+     of a real x.  It is defined by the integral representation Li_2(x)
+     = - \Re \int_0^x ds \log(1-s) / s.  Note that \Im(Li_2(x)) = 0 for
+     x <= 1, and -\pi\log(x) for x > 1.
+
+     Note that Abramowitz & Stegun refer to the Spence integral
+     S(x)=Li_2(1-x) as the dilogarithm rather than Li_2(x).
+
+\1f
+File: gsl-ref.info,  Node: Complex Argument,  Prev: Real Argument,  Up: Dilogarithm
+
+7.11.2 Complex Argument
+-----------------------
+
+ -- Function: int gsl_sf_complex_dilog_e (double R, double THETA,
+          gsl_sf_result * RESULT_RE, gsl_sf_result * RESULT_IM)
+     This function computes the full complex-valued dilogarithm for the
+     complex argument z = r \exp(i \theta). The real and imaginary
+     parts of the result are returned in RESULT_RE, RESULT_IM.
+
+\1f
+File: gsl-ref.info,  Node: Elementary Operations,  Next: Elliptic Integrals,  Prev: Dilogarithm,  Up: Special Functions
+
+7.12 Elementary Operations
+==========================
+
+The following functions allow for the propagation of errors when
+combining quantities by multiplication.  The functions are declared in
+the header file `gsl_sf_elementary.h'.
+
+ -- Function: int gsl_sf_multiply_e (double X, double Y, gsl_sf_result
+          * RESULT)
+     This function multiplies X and Y storing the product and its
+     associated error in RESULT.
+
+ -- Function: int gsl_sf_multiply_err_e (double X, double DX, double Y,
+          double DY, gsl_sf_result * RESULT)
+     This function multiplies X and Y with associated absolute errors
+     DX and DY.  The product xy +/- xy \sqrt((dx/x)^2 +(dy/y)^2) is
+     stored in RESULT.
+
+\1f
+File: gsl-ref.info,  Node: Elliptic Integrals,  Next: Elliptic Functions (Jacobi),  Prev: Elementary Operations,  Up: Special Functions
+
+7.13 Elliptic Integrals
+=======================
+
+The functions described in this section are declared in the header file
+`gsl_sf_ellint.h'.  Further information about the elliptic integrals
+can be found in Abramowitz & Stegun, Chapter 17.
+
+* Menu:
+
+* Definition of Legendre Forms::
+* Definition of Carlson Forms::
+* Legendre Form of Complete Elliptic Integrals::
+* Legendre Form of Incomplete Elliptic Integrals::
+* Carlson Forms::
+
+\1f
+File: gsl-ref.info,  Node: Definition of Legendre Forms,  Next: Definition of Carlson Forms,  Up: Elliptic Integrals
+
+7.13.1 Definition of Legendre Forms
+-----------------------------------
+
+The Legendre forms of elliptic integrals F(\phi,k), E(\phi,k) and
+\Pi(\phi,k,n) are defined by,
+
+       F(\phi,k) = \int_0^\phi dt 1/\sqrt((1 - k^2 \sin^2(t)))
+
+       E(\phi,k) = \int_0^\phi dt   \sqrt((1 - k^2 \sin^2(t)))
+
+     Pi(\phi,k,n) = \int_0^\phi dt 1/((1 + n \sin^2(t))\sqrt(1 - k^2 \sin^2(t)))
+
+The complete Legendre forms are denoted by K(k) = F(\pi/2, k) and E(k)
+= E(\pi/2, k).
+
+   The notation used here is based on Carlson, `Numerische Mathematik'
+33 (1979) 1 and differs slightly from that used by Abramowitz & Stegun,
+where the functions are given in terms of the parameter m = k^2 and n
+is replaced by -n.
+
+\1f
+File: gsl-ref.info,  Node: Definition of Carlson Forms,  Next: Legendre Form of Complete Elliptic Integrals,  Prev: Definition of Legendre Forms,  Up: Elliptic Integrals
+
+7.13.2 Definition of Carlson Forms
+----------------------------------
+
+The Carlson symmetric forms of elliptical integrals RC(x,y), RD(x,y,z),
+RF(x,y,z) and RJ(x,y,z,p) are defined by,
+
+         RC(x,y) = 1/2 \int_0^\infty dt (t+x)^(-1/2) (t+y)^(-1)
+
+       RD(x,y,z) = 3/2 \int_0^\infty dt (t+x)^(-1/2) (t+y)^(-1/2) (t+z)^(-3/2)
+
+       RF(x,y,z) = 1/2 \int_0^\infty dt (t+x)^(-1/2) (t+y)^(-1/2) (t+z)^(-1/2)
+
+     RJ(x,y,z,p) = 3/2 \int_0^\infty dt
+                      (t+x)^(-1/2) (t+y)^(-1/2) (t+z)^(-1/2) (t+p)^(-1)
+
+\1f
+File: gsl-ref.info,  Node: Legendre Form of Complete Elliptic Integrals,  Next: Legendre Form of Incomplete Elliptic Integrals,  Prev: Definition of Carlson Forms,  Up: Elliptic Integrals
+
+7.13.3 Legendre Form of Complete Elliptic Integrals
+---------------------------------------------------
+
+ -- Function: double gsl_sf_ellint_Kcomp (double K, gsl_mode_t MODE)
+ -- Function: int gsl_sf_ellint_Kcomp_e (double K, gsl_mode_t MODE,
+          gsl_sf_result * RESULT)
+     These routines compute the complete elliptic integral K(k) to the
+     accuracy specified by the mode variable MODE.  Note that
+     Abramowitz & Stegun define this function in terms of the parameter
+     m = k^2.
+
+ -- Function: double gsl_sf_ellint_Ecomp (double K, gsl_mode_t MODE)
+ -- Function: int gsl_sf_ellint_Ecomp_e (double K, gsl_mode_t MODE,
+          gsl_sf_result * RESULT)
+     These routines compute the complete elliptic integral E(k) to the
+     accuracy specified by the mode variable MODE.  Note that
+     Abramowitz & Stegun define this function in terms of the parameter
+     m = k^2.
+
+ -- Function: double gsl_sf_ellint_Pcomp (double K, double N,
+          gsl_mode_t MODE)
+ -- Function: int gsl_sf_ellint_Pcomp_e (double K, double N, gsl_mode_t
+          MODE, gsl_sf_result * RESULT)
+     These routines compute the complete elliptic integral \Pi(k,n) to
+     the accuracy specified by the mode variable MODE.  Note that
+     Abramowitz & Stegun define this function in terms of the
+     parameters m = k^2 and \sin^2(\alpha) = k^2, with the change of
+     sign n \to -n.
+
+\1f
+File: gsl-ref.info,  Node: Legendre Form of Incomplete Elliptic Integrals,  Next: Carlson Forms,  Prev: Legendre Form of Complete Elliptic Integrals,  Up: Elliptic Integrals
+
+7.13.4 Legendre Form of Incomplete Elliptic Integrals
+-----------------------------------------------------
+
+ -- Function: double gsl_sf_ellint_F (double PHI, double K, gsl_mode_t
+          MODE)
+ -- Function: int gsl_sf_ellint_F_e (double PHI, double K, gsl_mode_t
+          MODE, gsl_sf_result * RESULT)
+     These routines compute the incomplete elliptic integral F(\phi,k)
+     to the accuracy specified by the mode variable MODE.  Note that
+     Abramowitz & Stegun define this function in terms of the parameter
+     m = k^2.
+
+ -- Function: double gsl_sf_ellint_E (double PHI, double K, gsl_mode_t
+          MODE)
+ -- Function: int gsl_sf_ellint_E_e (double PHI, double K, gsl_mode_t
+          MODE, gsl_sf_result * RESULT)
+     These routines compute the incomplete elliptic integral E(\phi,k)
+     to the accuracy specified by the mode variable MODE.  Note that
+     Abramowitz & Stegun define this function in terms of the parameter
+     m = k^2.
+
+ -- Function: double gsl_sf_ellint_P (double PHI, double K, double N,
+          gsl_mode_t MODE)
+ -- Function: int gsl_sf_ellint_P_e (double PHI, double K, double N,
+          gsl_mode_t MODE, gsl_sf_result * RESULT)
+     These routines compute the incomplete elliptic integral
+     \Pi(\phi,k,n) to the accuracy specified by the mode variable MODE.
+     Note that Abramowitz & Stegun define this function in terms of the
+     parameters m = k^2 and \sin^2(\alpha) = k^2, with the change of
+     sign n \to -n.
+
+ -- Function: double gsl_sf_ellint_D (double PHI, double K, double N,
+          gsl_mode_t MODE)
+ -- Function: int gsl_sf_ellint_D_e (double PHI, double K, double N,
+          gsl_mode_t MODE, gsl_sf_result * RESULT)
+     These functions compute the incomplete elliptic integral D(\phi,k)
+     which is defined through the Carlson form RD(x,y,z) by the
+     following relation,
+
+          D(\phi,k,n) = (1/3)(\sin(\phi))^3 RD (1-\sin^2(\phi), 1-k^2 \sin^2(\phi), 1).
+     The argument N is not used and will be removed in a future release.
+
+
+\1f
+File: gsl-ref.info,  Node: Carlson Forms,  Prev: Legendre Form of Incomplete Elliptic Integrals,  Up: Elliptic Integrals
+
+7.13.5 Carlson Forms
+--------------------
+
+ -- Function: double gsl_sf_ellint_RC (double X, double Y, gsl_mode_t
+          MODE)
+ -- Function: int gsl_sf_ellint_RC_e (double X, double Y, gsl_mode_t
+          MODE, gsl_sf_result * RESULT)
+     These routines compute the incomplete elliptic integral RC(x,y) to
+     the accuracy specified by the mode variable MODE.
+
+ -- Function: double gsl_sf_ellint_RD (double X, double Y, double Z,
+          gsl_mode_t MODE)
+ -- Function: int gsl_sf_ellint_RD_e (double X, double Y, double Z,
+          gsl_mode_t MODE, gsl_sf_result * RESULT)
+     These routines compute the incomplete elliptic integral RD(x,y,z)
+     to the accuracy specified by the mode variable MODE.
+
+ -- Function: double gsl_sf_ellint_RF (double X, double Y, double Z,
+          gsl_mode_t MODE)
+ -- Function: int gsl_sf_ellint_RF_e (double X, double Y, double Z,
+          gsl_mode_t MODE, gsl_sf_result * RESULT)
+     These routines compute the incomplete elliptic integral RF(x,y,z)
+     to the accuracy specified by the mode variable MODE.
+
+ -- Function: double gsl_sf_ellint_RJ (double X, double Y, double Z,
+          double P, gsl_mode_t MODE)
+ -- Function: int gsl_sf_ellint_RJ_e (double X, double Y, double Z,
+          double P, gsl_mode_t MODE, gsl_sf_result * RESULT)
+     These routines compute the incomplete elliptic integral RJ(x,y,z,p)
+     to the accuracy specified by the mode variable MODE.
+
+\1f
+File: gsl-ref.info,  Node: Elliptic Functions (Jacobi),  Next: Error Functions,  Prev: Elliptic Integrals,  Up: Special Functions
+
+7.14 Elliptic Functions (Jacobi)
+================================
+
+The Jacobian Elliptic functions are defined in Abramowitz & Stegun,
+Chapter 16.  The functions are declared in the header file
+`gsl_sf_elljac.h'.
+
+ -- Function: int gsl_sf_elljac_e (double U, double M, double * SN,
+          double * CN, double * DN)
+     This function computes the Jacobian elliptic functions sn(u|m),
+     cn(u|m), dn(u|m) by descending Landen transformations.
+
+\1f
+File: gsl-ref.info,  Node: Error Functions,  Next: Exponential Functions,  Prev: Elliptic Functions (Jacobi),  Up: Special Functions
+
+7.15 Error Functions
+====================
+
+The error function is described in Abramowitz & Stegun, Chapter 7.  The
+functions in this section are declared in the header file
+`gsl_sf_erf.h'.
+
+* Menu:
+
+* Error Function::
+* Complementary Error Function::
+* Log Complementary Error Function::
+* Probability functions::
+
+\1f
+File: gsl-ref.info,  Node: Error Function,  Next: Complementary Error Function,  Up: Error Functions
+
+7.15.1 Error Function
+---------------------
+
+ -- Function: double gsl_sf_erf (double X)
+ -- Function: int gsl_sf_erf_e (double X, gsl_sf_result * RESULT)
+     These routines compute the error function erf(x), where erf(x) =
+     (2/\sqrt(\pi)) \int_0^x dt \exp(-t^2).
+
+\1f
+File: gsl-ref.info,  Node: Complementary Error Function,  Next: Log Complementary Error Function,  Prev: Error Function,  Up: Error Functions
+
+7.15.2 Complementary Error Function
+-----------------------------------
+
+ -- Function: double gsl_sf_erfc (double X)
+ -- Function: int gsl_sf_erfc_e (double X, gsl_sf_result * RESULT)
+     These routines compute the complementary error function erfc(x) =
+     1 - erf(x) = (2/\sqrt(\pi)) \int_x^\infty \exp(-t^2).
+
+\1f
+File: gsl-ref.info,  Node: Log Complementary Error Function,  Next: Probability functions,  Prev: Complementary Error Function,  Up: Error Functions
+
+7.15.3 Log Complementary Error Function
+---------------------------------------
+
+ -- Function: double gsl_sf_log_erfc (double X)
+ -- Function: int gsl_sf_log_erfc_e (double X, gsl_sf_result * RESULT)
+     These routines compute the logarithm of the complementary error
+     function \log(\erfc(x)).
+
+\1f
+File: gsl-ref.info,  Node: Probability functions,  Prev: Log Complementary Error Function,  Up: Error Functions
+
+7.15.4 Probability functions
+----------------------------
+
+The probability functions for the Normal or Gaussian distribution are
+described in Abramowitz & Stegun, Section 26.2.
+
+ -- Function: double gsl_sf_erf_Z (double X)
+ -- Function: int gsl_sf_erf_Z_e (double X, gsl_sf_result * RESULT)
+     These routines compute the Gaussian probability density function
+     Z(x) = (1/\sqrt{2\pi}) \exp(-x^2/2).
+
+ -- Function: double gsl_sf_erf_Q (double X)
+ -- Function: int gsl_sf_erf_Q_e (double X, gsl_sf_result * RESULT)
+     These routines compute the upper tail of the Gaussian probability
+     function Q(x) = (1/\sqrt{2\pi}) \int_x^\infty dt \exp(-t^2/2).
+
+   The "hazard function" for the normal distribution, also known as the
+inverse Mills' ratio, is defined as,
+
+     h(x) = Z(x)/Q(x) = \sqrt{2/\pi} \exp(-x^2 / 2) / \erfc(x/\sqrt 2)
+
+It decreases rapidly as x approaches -\infty and asymptotes to h(x)
+\sim x as x approaches +\infty.
+
+ -- Function: double gsl_sf_hazard (double X)
+ -- Function: int gsl_sf_hazard_e (double X, gsl_sf_result * RESULT)
+     These routines compute the hazard function for the normal
+     distribution.
+
+\1f
+File: gsl-ref.info,  Node: Exponential Functions,  Next: Exponential Integrals,  Prev: Error Functions,  Up: Special Functions
+
+7.16 Exponential Functions
+==========================
+
+The functions described in this section are declared in the header file
+`gsl_sf_exp.h'.
+
+* Menu:
+
+* Exponential Function::
+* Relative Exponential Functions::
+* Exponentiation With Error Estimate::
+
+\1f
+File: gsl-ref.info,  Node: Exponential Function,  Next: Relative Exponential Functions,  Up: Exponential Functions
+
+7.16.1 Exponential Function
+---------------------------
+
+ -- Function: double gsl_sf_exp (double X)
+ -- Function: int gsl_sf_exp_e (double X, gsl_sf_result * RESULT)
+     These routines provide an exponential function \exp(x) using GSL
+     semantics and error checking.
+
+ -- Function: int gsl_sf_exp_e10_e (double X, gsl_sf_result_e10 *
+          RESULT)
+     This function computes the exponential \exp(x) using the
+     `gsl_sf_result_e10' type to return a result with extended range.
+     This function may be useful if the value of \exp(x) would overflow
+     the  numeric range of `double'.
+
+ -- Function: double gsl_sf_exp_mult (double X, double Y)
+ -- Function: int gsl_sf_exp_mult_e (double X, double Y, gsl_sf_result
+          * RESULT)
+     These routines exponentiate X and multiply by the factor Y to
+     return the product y \exp(x).
+
+ -- Function: int gsl_sf_exp_mult_e10_e (const double X, const double
+          Y, gsl_sf_result_e10 * RESULT)
+     This function computes the product y \exp(x) using the
+     `gsl_sf_result_e10' type to return a result with extended numeric
+     range.
+
+\1f
+File: gsl-ref.info,  Node: Relative Exponential Functions,  Next: Exponentiation With Error Estimate,  Prev: Exponential Function,  Up: Exponential Functions
+
+7.16.2 Relative Exponential Functions
+-------------------------------------
+
+ -- Function: double gsl_sf_expm1 (double X)
+ -- Function: int gsl_sf_expm1_e (double X, gsl_sf_result * RESULT)
+     These routines compute the quantity \exp(x)-1 using an algorithm
+     that is accurate for small x.
+
+ -- Function: double gsl_sf_exprel (double X)
+ -- Function: int gsl_sf_exprel_e (double X, gsl_sf_result * RESULT)
+     These routines compute the quantity (\exp(x)-1)/x using an
+     algorithm that is accurate for small x.  For small x the algorithm
+     is based on the expansion (\exp(x)-1)/x = 1 + x/2 + x^2/(2*3) +
+     x^3/(2*3*4) + \dots.
+
+ -- Function: double gsl_sf_exprel_2 (double X)
+ -- Function: int gsl_sf_exprel_2_e (double X, gsl_sf_result * RESULT)
+     These routines compute the quantity 2(\exp(x)-1-x)/x^2 using an
+     algorithm that is accurate for small x.  For small x the algorithm
+     is based on the expansion 2(\exp(x)-1-x)/x^2 = 1 + x/3 + x^2/(3*4)
+     + x^3/(3*4*5) + \dots.
+
+ -- Function: double gsl_sf_exprel_n (int N, double X)
+ -- Function: int gsl_sf_exprel_n_e (int N, double X, gsl_sf_result *
+          RESULT)
+     These routines compute the N-relative exponential, which is the
+     N-th generalization of the functions `gsl_sf_exprel' and
+     `gsl_sf_exprel_2'.  The N-relative exponential is given by,
+
+          exprel_N(x) = N!/x^N (\exp(x) - \sum_{k=0}^{N-1} x^k/k!)
+                      = 1 + x/(N+1) + x^2/((N+1)(N+2)) + ...
+                      = 1F1 (1,1+N,x)
+
+\1f
+File: gsl-ref.info,  Node: Exponentiation With Error Estimate,  Prev: Relative Exponential Functions,  Up: Exponential Functions
+
+7.16.3 Exponentiation With Error Estimate
+-----------------------------------------
+
+ -- Function: int gsl_sf_exp_err_e (double X, double DX, gsl_sf_result
+          * RESULT)
+     This function exponentiates X with an associated absolute error DX.
+
+ -- Function: int gsl_sf_exp_err_e10_e (double X, double DX,
+          gsl_sf_result_e10 * RESULT)
+     This function exponentiates a quantity X with an associated
+     absolute error DX using the `gsl_sf_result_e10' type to return a
+     result with extended range.
+
+ -- Function: int gsl_sf_exp_mult_err_e (double X, double DX, double Y,
+          double DY, gsl_sf_result * RESULT)
+     This routine computes the product y \exp(x) for the quantities X,
+     Y with associated absolute errors DX, DY.
+
+ -- Function: int gsl_sf_exp_mult_err_e10_e (double X, double DX,
+          double Y, double DY, gsl_sf_result_e10 * RESULT)
+     This routine computes the product y \exp(x) for the quantities X,
+     Y with associated absolute errors DX, DY using the
+     `gsl_sf_result_e10' type to return a result with extended range.
+
+\1f
+File: gsl-ref.info,  Node: Exponential Integrals,  Next: Fermi-Dirac Function,  Prev: Exponential Functions,  Up: Special Functions
+
+7.17 Exponential Integrals
+==========================
+
+Information on the exponential integrals can be found in Abramowitz &
+Stegun, Chapter 5.  These functions are declared in the header file
+`gsl_sf_expint.h'.
+
+* Menu:
+
+* Exponential Integral::
+* Ei(x)::
+* Hyperbolic Integrals::
+* Ei_3(x)::
+* Trigonometric Integrals::
+* Arctangent Integral::
+
+\1f
+File: gsl-ref.info,  Node: Exponential Integral,  Next: Ei(x),  Up: Exponential Integrals
+
+7.17.1 Exponential Integral
+---------------------------
+
+ -- Function: double gsl_sf_expint_E1 (double X)
+ -- Function: int gsl_sf_expint_E1_e (double X, gsl_sf_result * RESULT)
+     These routines compute the exponential integral E_1(x),
+
+          E_1(x) := \Re \int_1^\infty dt \exp(-xt)/t.
+
+
+
+ -- Function: double gsl_sf_expint_E2 (double X)
+ -- Function: int gsl_sf_expint_E2_e (double X, gsl_sf_result * RESULT)
+     These routines compute the second-order exponential integral
+     E_2(x),
+
+          E_2(x) := \Re \int_1^\infty dt \exp(-xt)/t^2.
+
+
+
+ -- Function: double gsl_sf_expint_En (int N, double X)
+ -- Function: int gsl_sf_expint_En_e (int N, double X, gsl_sf_result *
+          RESULT)
+     These routines compute the exponential integral E_n(x) of order n,
+
+          E_n(x) := \Re \int_1^\infty dt \exp(-xt)/t^n.
+
+
+
+\1f
+File: gsl-ref.info,  Node: Ei(x),  Next: Hyperbolic Integrals,  Prev: Exponential Integral,  Up: Exponential Integrals
+
+7.17.2 Ei(x)
+------------
+
+ -- Function: double gsl_sf_expint_Ei (double X)
+ -- Function: int gsl_sf_expint_Ei_e (double X, gsl_sf_result * RESULT)
+     These routines compute the exponential integral Ei(x),
+
+          Ei(x) := - PV(\int_{-x}^\infty dt \exp(-t)/t)
+
+     where PV denotes the principal value of the integral.
+
+\1f
+File: gsl-ref.info,  Node: Hyperbolic Integrals,  Next: Ei_3(x),  Prev: Ei(x),  Up: Exponential Integrals
+
+7.17.3 Hyperbolic Integrals
+---------------------------
+
+ -- Function: double gsl_sf_Shi (double X)
+ -- Function: int gsl_sf_Shi_e (double X, gsl_sf_result * RESULT)
+     These routines compute the integral Shi(x) = \int_0^x dt
+     \sinh(t)/t.
+
+ -- Function: double gsl_sf_Chi (double X)
+ -- Function: int gsl_sf_Chi_e (double X, gsl_sf_result * RESULT)
+     These routines compute the integral  Chi(x) := \Re[ \gamma_E +
+     \log(x) + \int_0^x dt (\cosh(t)-1)/t] , where \gamma_E is the
+     Euler constant (available as the macro `M_EULER').
+
+\1f
+File: gsl-ref.info,  Node: Ei_3(x),  Next: Trigonometric Integrals,  Prev: Hyperbolic Integrals,  Up: Exponential Integrals
+
+7.17.4 Ei_3(x)
+--------------
+
+ -- Function: double gsl_sf_expint_3 (double X)
+ -- Function: int gsl_sf_expint_3_e (double X, gsl_sf_result * RESULT)
+     These routines compute the third-order exponential integral
+     Ei_3(x) = \int_0^xdt \exp(-t^3) for x >= 0.
+
+\1f
+File: gsl-ref.info,  Node: Trigonometric Integrals,  Next: Arctangent Integral,  Prev: Ei_3(x),  Up: Exponential Integrals
+
+7.17.5 Trigonometric Integrals
+------------------------------
+
+ -- Function: double gsl_sf_Si (const double X)
+ -- Function: int gsl_sf_Si_e (double X, gsl_sf_result * RESULT)
+     These routines compute the Sine integral Si(x) = \int_0^x dt
+     \sin(t)/t.
+
+ -- Function: double gsl_sf_Ci (const double X)
+ -- Function: int gsl_sf_Ci_e (double X, gsl_sf_result * RESULT)
+     These routines compute the Cosine integral Ci(x) = -\int_x^\infty
+     dt \cos(t)/t for x > 0.
+
+\1f
+File: gsl-ref.info,  Node: Arctangent Integral,  Prev: Trigonometric Integrals,  Up: Exponential Integrals
+
+7.17.6 Arctangent Integral
+--------------------------
+
+ -- Function: double gsl_sf_atanint (double X)
+ -- Function: int gsl_sf_atanint_e (double X, gsl_sf_result * RESULT)
+     These routines compute the Arctangent integral, which is defined
+     as AtanInt(x) = \int_0^x dt \arctan(t)/t.
+
+\1f
+File: gsl-ref.info,  Node: Fermi-Dirac Function,  Next: Gamma and Beta Functions,  Prev: Exponential Integrals,  Up: Special Functions
+
+7.18 Fermi-Dirac Function
+=========================
+
+The functions described in this section are declared in the header file
+`gsl_sf_fermi_dirac.h'.
+
+* Menu:
+
+* Complete Fermi-Dirac Integrals::
+* Incomplete Fermi-Dirac Integrals::
+
+\1f
+File: gsl-ref.info,  Node: Complete Fermi-Dirac Integrals,  Next: Incomplete Fermi-Dirac Integrals,  Up: Fermi-Dirac Function
+
+7.18.1 Complete Fermi-Dirac Integrals
+-------------------------------------
+
+The complete Fermi-Dirac integral F_j(x) is given by,
+
+     F_j(x)   := (1/\Gamma(j+1)) \int_0^\infty dt (t^j / (\exp(t-x) + 1))
+   Note that the Fermi-Dirac integral is sometimes defined without the
+normalisation factor in other texts.
+
+ -- Function: double gsl_sf_fermi_dirac_m1 (double X)
+ -- Function: int gsl_sf_fermi_dirac_m1_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the complete Fermi-Dirac integral with an
+     index of -1.  This integral is given by F_{-1}(x) = e^x / (1 +
+     e^x).
+
+ -- Function: double gsl_sf_fermi_dirac_0 (double X)
+ -- Function: int gsl_sf_fermi_dirac_0_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the complete Fermi-Dirac integral with an
+     index of 0.  This integral is given by F_0(x) = \ln(1 + e^x).
+
+ -- Function: double gsl_sf_fermi_dirac_1 (double X)
+ -- Function: int gsl_sf_fermi_dirac_1_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the complete Fermi-Dirac integral with an
+     index of 1, F_1(x) = \int_0^\infty dt (t /(\exp(t-x)+1)).
+
+ -- Function: double gsl_sf_fermi_dirac_2 (double X)
+ -- Function: int gsl_sf_fermi_dirac_2_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the complete Fermi-Dirac integral with an
+     index of 2, F_2(x) = (1/2) \int_0^\infty dt (t^2 /(\exp(t-x)+1)).
+
+ -- Function: double gsl_sf_fermi_dirac_int (int J, double X)
+ -- Function: int gsl_sf_fermi_dirac_int_e (int J, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the complete Fermi-Dirac integral with an
+     integer index of j, F_j(x) = (1/\Gamma(j+1)) \int_0^\infty dt (t^j
+     /(\exp(t-x)+1)).
+
+ -- Function: double gsl_sf_fermi_dirac_mhalf (double X)
+ -- Function: int gsl_sf_fermi_dirac_mhalf_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the complete Fermi-Dirac integral
+     F_{-1/2}(x).
+
+ -- Function: double gsl_sf_fermi_dirac_half (double X)
+ -- Function: int gsl_sf_fermi_dirac_half_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the complete Fermi-Dirac integral
+     F_{1/2}(x).
+
+ -- Function: double gsl_sf_fermi_dirac_3half (double X)
+ -- Function: int gsl_sf_fermi_dirac_3half_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the complete Fermi-Dirac integral
+     F_{3/2}(x).
+
+\1f
+File: gsl-ref.info,  Node: Incomplete Fermi-Dirac Integrals,  Prev: Complete Fermi-Dirac Integrals,  Up: Fermi-Dirac Function
+
+7.18.2 Incomplete Fermi-Dirac Integrals
+---------------------------------------
+
+The incomplete Fermi-Dirac integral F_j(x,b) is given by,
+
+     F_j(x,b)   := (1/\Gamma(j+1)) \int_b^\infty dt (t^j / (\Exp(t-x) + 1))
+
+ -- Function: double gsl_sf_fermi_dirac_inc_0 (double X, double B)
+ -- Function: int gsl_sf_fermi_dirac_inc_0_e (double X, double B,
+          gsl_sf_result * RESULT)
+     These routines compute the incomplete Fermi-Dirac integral with an
+     index of zero, F_0(x,b) = \ln(1 + e^{b-x}) - (b-x).
+
+\1f
+File: gsl-ref.info,  Node: Gamma and Beta Functions,  Next: Gegenbauer Functions,  Prev: Fermi-Dirac Function,  Up: Special Functions
+
+7.19 Gamma and Beta Functions
+=============================
+
+This following routines compute the gamma and beta functions in their
+full and incomplete forms, as well as various kinds of factorials.  The
+functions described in this section are declared in the header file
+`gsl_sf_gamma.h'.
+
+* Menu:
+
+* Gamma Functions::
+* Factorials::
+* Pochhammer Symbol::
+* Incomplete Gamma Functions::
+* Beta Functions::
+* Incomplete Beta Function::
+
+\1f
+File: gsl-ref.info,  Node: Gamma Functions,  Next: Factorials,  Up: Gamma and Beta Functions
+
+7.19.1 Gamma Functions
+----------------------
+
+The Gamma function is defined by the following integral,
+
+     \Gamma(x) = \int_0^\infty dt  t^{x-1} \exp(-t)
+
+It is related to the factorial function by \Gamma(n)=(n-1)!  for
+positive integer n.  Further information on the Gamma function can be
+found in Abramowitz & Stegun, Chapter 6.
+
+ -- Function: double gsl_sf_gamma (double X)
+ -- Function: int gsl_sf_gamma_e (double X, gsl_sf_result * RESULT)
+     These routines compute the Gamma function \Gamma(x), subject to x
+     not being a negative integer or zero.  The function is computed
+     using the real Lanczos method. The maximum value of x such that
+     \Gamma(x) is not considered an overflow is given by the macro
+     `GSL_SF_GAMMA_XMAX' and is 171.0.
+
+ -- Function: double gsl_sf_lngamma (double X)
+ -- Function: int gsl_sf_lngamma_e (double X, gsl_sf_result * RESULT)
+     These routines compute the logarithm of the Gamma function,
+     \log(\Gamma(x)), subject to x not being a negative integer or
+     zero.  For x<0 the real part of \log(\Gamma(x)) is returned, which
+     is equivalent to \log(|\Gamma(x)|).  The function is computed
+     using the real Lanczos method.
+
+ -- Function: int gsl_sf_lngamma_sgn_e (double X, gsl_sf_result *
+          RESULT_LG, double * SGN)
+     This routine computes the sign of the gamma function and the
+     logarithm of its magnitude, subject to x not being a negative
+     integer or zero.  The function is computed using the real Lanczos
+     method.  The value of the gamma function and its error can be
+     reconstructed using the relation \Gamma(x) = sgn *
+     \exp(result\_lg), taking into account the two components of
+     RESULT_LG.
+
+ -- Function: double gsl_sf_gammastar (double X)
+ -- Function: int gsl_sf_gammastar_e (double X, gsl_sf_result * RESULT)
+     These routines compute the regulated Gamma Function \Gamma^*(x)
+     for x > 0. The regulated gamma function is given by,
+
+          \Gamma^*(x) = \Gamma(x)/(\sqrt{2\pi} x^{(x-1/2)} \exp(-x))
+                      = (1 + (1/12x) + ...)  for x \to \infty
+     and is a useful suggestion of Temme.
+
+ -- Function: double gsl_sf_gammainv (double X)
+ -- Function: int gsl_sf_gammainv_e (double X, gsl_sf_result * RESULT)
+     These routines compute the reciprocal of the gamma function,
+     1/\Gamma(x) using the real Lanczos method.
+
+ -- Function: int gsl_sf_lngamma_complex_e (double ZR, double ZI,
+          gsl_sf_result * LNR, gsl_sf_result * ARG)
+     This routine computes \log(\Gamma(z)) for complex z=z_r+i z_i and
+     z not a negative integer or zero, using the complex Lanczos
+     method.  The returned parameters are lnr = \log|\Gamma(z)| and arg
+     = \arg(\Gamma(z)) in (-\pi,\pi].  Note that the phase part (ARG)
+     is not well-determined when |z| is very large, due to inevitable
+     roundoff in restricting to (-\pi,\pi].  This will result in a
+     `GSL_ELOSS' error when it occurs.  The absolute value part (LNR),
+     however, never suffers from loss of precision.
+
+\1f
+File: gsl-ref.info,  Node: Factorials,  Next: Pochhammer Symbol,  Prev: Gamma Functions,  Up: Gamma and Beta Functions
+
+7.19.2 Factorials
+-----------------
+
+Although factorials can be computed from the Gamma function, using the
+relation n! = \Gamma(n+1) for non-negative integer n, it is usually
+more efficient to call the functions in this section, particularly for
+small values of n, whose factorial values are maintained in hardcoded
+tables.
+
+ -- Function: double gsl_sf_fact (unsigned int N)
+ -- Function: int gsl_sf_fact_e (unsigned int N, gsl_sf_result * RESULT)
+     These routines compute the factorial n!.  The factorial is related
+     to the Gamma function by n! = \Gamma(n+1).  The maximum value of n
+     such that n! is not considered an overflow is given by the macro
+     `GSL_SF_FACT_NMAX' and is 170.
+
+ -- Function: double gsl_sf_doublefact (unsigned int N)
+ -- Function: int gsl_sf_doublefact_e (unsigned int N, gsl_sf_result *
+          RESULT)
+     These routines compute the double factorial n!! = n(n-2)(n-4)
+     \dots.  The maximum value of n such that n!! is not considered an
+     overflow is given by the macro `GSL_SF_DOUBLEFACT_NMAX' and is 297.
+
+ -- Function: double gsl_sf_lnfact (unsigned int N)
+ -- Function: int gsl_sf_lnfact_e (unsigned int N, gsl_sf_result *
+          RESULT)
+     These routines compute the logarithm of the factorial of N,
+     \log(n!).  The algorithm is faster than computing \ln(\Gamma(n+1))
+     via `gsl_sf_lngamma' for n < 170, but defers for larger N.
+
+ -- Function: double gsl_sf_lndoublefact (unsigned int N)
+ -- Function: int gsl_sf_lndoublefact_e (unsigned int N, gsl_sf_result
+          * RESULT)
+     These routines compute the logarithm of the double factorial of N,
+     \log(n!!).
+
+ -- Function: double gsl_sf_choose (unsigned int N, unsigned int M)
+ -- Function: int gsl_sf_choose_e (unsigned int N, unsigned int M,
+          gsl_sf_result * RESULT)
+     These routines compute the combinatorial factor `n choose m' =
+     n!/(m!(n-m)!)
+
+ -- Function: double gsl_sf_lnchoose (unsigned int N, unsigned int M)
+ -- Function: int gsl_sf_lnchoose_e (unsigned int N, unsigned int M,
+          gsl_sf_result * RESULT)
+     These routines compute the logarithm of `n choose m'.  This is
+     equivalent to the sum \log(n!) - \log(m!) - \log((n-m)!).
+
+ -- Function: double gsl_sf_taylorcoeff (int N, double X)
+ -- Function: int gsl_sf_taylorcoeff_e (int N, double X, gsl_sf_result
+          * RESULT)
+     These routines compute the Taylor coefficient x^n / n! for x >= 0,
+     n >= 0.
+
+\1f
+File: gsl-ref.info,  Node: Pochhammer Symbol,  Next: Incomplete Gamma Functions,  Prev: Factorials,  Up: Gamma and Beta Functions
+
+7.19.3 Pochhammer Symbol
+------------------------
+
+ -- Function: double gsl_sf_poch (double A, double X)
+ -- Function: int gsl_sf_poch_e (double A, double X, gsl_sf_result *
+          RESULT)
+     These routines compute the Pochhammer symbol (a)_x = \Gamma(a +
+     x)/\Gamma(a).  The Pochhammer symbol is also known as the Apell
+     symbol and sometimes written as (a,x).  When a and a+x are
+     negative integers or zero, the limiting value of the ratio is
+     returned.
+
+ -- Function: double gsl_sf_lnpoch (double A, double X)
+ -- Function: int gsl_sf_lnpoch_e (double A, double X, gsl_sf_result *
+          RESULT)
+     These routines compute the logarithm of the Pochhammer symbol,
+     \log((a)_x) = \log(\Gamma(a + x)/\Gamma(a)).
+
+ -- Function: int gsl_sf_lnpoch_sgn_e (double A, double X,
+          gsl_sf_result * RESULT, double * SGN)
+     These routines compute the sign of the Pochhammer symbol and the
+     logarithm of its magnitude.  The computed parameters are result =
+     \log(|(a)_x|) with a corresponding error term, and sgn =
+     \sgn((a)_x) where (a)_x = \Gamma(a + x)/\Gamma(a).
+
+ -- Function: double gsl_sf_pochrel (double A, double X)
+ -- Function: int gsl_sf_pochrel_e (double A, double X, gsl_sf_result *
+          RESULT)
+     These routines compute the relative Pochhammer symbol ((a)_x -
+     1)/x where (a)_x = \Gamma(a + x)/\Gamma(a).
+
+\1f
+File: gsl-ref.info,  Node: Incomplete Gamma Functions,  Next: Beta Functions,  Prev: Pochhammer Symbol,  Up: Gamma and Beta Functions
+
+7.19.4 Incomplete Gamma Functions
+---------------------------------
+
+ -- Function: double gsl_sf_gamma_inc (double A, double X)
+ -- Function: int gsl_sf_gamma_inc_e (double A, double X, gsl_sf_result
+          * RESULT)
+     These functions compute the unnormalized incomplete Gamma Function
+     \Gamma(a,x) = \int_x^\infty dt t^{a-1} \exp(-t) for a real and x
+     >= 0.
+
+ -- Function: double gsl_sf_gamma_inc_Q (double A, double X)
+ -- Function: int gsl_sf_gamma_inc_Q_e (double A, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the normalized incomplete Gamma Function
+     Q(a,x) = 1/\Gamma(a) \int_x^\infty dt t^{a-1} \exp(-t) for a > 0,
+     x >= 0.
+
+ -- Function: double gsl_sf_gamma_inc_P (double A, double X)
+ -- Function: int gsl_sf_gamma_inc_P_e (double A, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the complementary normalized incomplete
+     Gamma Function P(a,x) = 1 - Q(a,x) = 1/\Gamma(a) \int_0^x dt
+     t^{a-1} \exp(-t) for a > 0, x >= 0.
+
+     Note that Abramowitz & Stegun call P(a,x) the incomplete gamma
+     function (section 6.5).
+
+\1f
+File: gsl-ref.info,  Node: Beta Functions,  Next: Incomplete Beta Function,  Prev: Incomplete Gamma Functions,  Up: Gamma and Beta Functions
+
+7.19.5 Beta Functions
+---------------------
+
+ -- Function: double gsl_sf_beta (double A, double B)
+ -- Function: int gsl_sf_beta_e (double A, double B, gsl_sf_result *
+          RESULT)
+     These routines compute the Beta Function, B(a,b) =
+     \Gamma(a)\Gamma(b)/\Gamma(a+b) subject to a and b not being
+     negative integers.
+
+ -- Function: double gsl_sf_lnbeta (double A, double B)
+ -- Function: int gsl_sf_lnbeta_e (double A, double B, gsl_sf_result *
+          RESULT)
+     These routines compute the logarithm of the Beta Function,
+     \log(B(a,b)) subject to a and b not being negative integers.
+
+\1f
+File: gsl-ref.info,  Node: Incomplete Beta Function,  Prev: Beta Functions,  Up: Gamma and Beta Functions
+
+7.19.6 Incomplete Beta Function
+-------------------------------
+
+ -- Function: double gsl_sf_beta_inc (double A, double B, double X)
+ -- Function: int gsl_sf_beta_inc_e (double A, double B, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the normalized incomplete Beta function
+     I_x(a,b)=B_x(a,b)/B(a,b) where B_x(a,b) = \int_0^x t^{a-1}
+     (1-t)^{b-1} dt for 0 <= x <= 1.   For a > 0, b > 0 the value is
+     computed using a continued fraction expansion.  For all other
+     values it is computed using the relation I_x(a,b,x) = (1/a) x^a
+     2F1(a,1-b,a+1,x)/B(a,b).
+
+\1f
+File: gsl-ref.info,  Node: Gegenbauer Functions,  Next: Hypergeometric Functions,  Prev: Gamma and Beta Functions,  Up: Special Functions
+
+7.20 Gegenbauer Functions
+=========================
+
+The Gegenbauer polynomials are defined in Abramowitz & Stegun, Chapter
+22, where they are known as Ultraspherical polynomials.  The functions
+described in this section are declared in the header file
+`gsl_sf_gegenbauer.h'.
+
+ -- Function: double gsl_sf_gegenpoly_1 (double LAMBDA, double X)
+ -- Function: double gsl_sf_gegenpoly_2 (double LAMBDA, double X)
+ -- Function: double gsl_sf_gegenpoly_3 (double LAMBDA, double X)
+ -- Function: int gsl_sf_gegenpoly_1_e (double LAMBDA, double X,
+          gsl_sf_result * RESULT)
+ -- Function: int gsl_sf_gegenpoly_2_e (double LAMBDA, double X,
+          gsl_sf_result * RESULT)
+ -- Function: int gsl_sf_gegenpoly_3_e (double LAMBDA, double X,
+          gsl_sf_result * RESULT)
+     These functions evaluate the Gegenbauer polynomials
+     C^{(\lambda)}_n(x) using explicit representations for n =1, 2, 3.
+
+ -- Function: double gsl_sf_gegenpoly_n (int N, double LAMBDA, double X)
+ -- Function: int gsl_sf_gegenpoly_n_e (int N, double LAMBDA, double X,
+          gsl_sf_result * RESULT)
+     These functions evaluate the Gegenbauer polynomial
+     C^{(\lambda)}_n(x) for a specific value of N, LAMBDA, X subject to
+     \lambda > -1/2, n >= 0.
+
+ -- Function: int gsl_sf_gegenpoly_array (int NMAX, double LAMBDA,
+          double X, double RESULT_ARRAY[])
+     This function computes an array of Gegenbauer polynomials
+     C^{(\lambda)}_n(x) for n = 0, 1, 2, \dots, nmax, subject to
+     \lambda > -1/2, nmax >= 0.
+
+\1f
+File: gsl-ref.info,  Node: Hypergeometric Functions,  Next: Laguerre Functions,  Prev: Gegenbauer Functions,  Up: Special Functions
+
+7.21 Hypergeometric Functions
+=============================
+
+Hypergeometric functions are described in Abramowitz & Stegun, Chapters
+13 and 15.  These functions are declared in the header file
+`gsl_sf_hyperg.h'.
+
+ -- Function: double gsl_sf_hyperg_0F1 (double C, double X)
+ -- Function: int gsl_sf_hyperg_0F1_e (double C, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the hypergeometric function 0F1(c,x).
+
+ -- Function: double gsl_sf_hyperg_1F1_int (int M, int N, double X)
+ -- Function: int gsl_sf_hyperg_1F1_int_e (int M, int N, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the confluent hypergeometric function
+     1F1(m,n,x) = M(m,n,x) for integer parameters M, N.
+
+ -- Function: double gsl_sf_hyperg_1F1 (double A, double B, double X)
+ -- Function: int gsl_sf_hyperg_1F1_e (double A, double B, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the confluent hypergeometric function
+     1F1(a,b,x) = M(a,b,x) for general parameters A, B.
+
+ -- Function: double gsl_sf_hyperg_U_int (int M, int N, double X)
+ -- Function: int gsl_sf_hyperg_U_int_e (int M, int N, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the confluent hypergeometric function
+     U(m,n,x) for integer parameters M, N.
+
+ -- Function: int gsl_sf_hyperg_U_int_e10_e (int M, int N, double X,
+          gsl_sf_result_e10 * RESULT)
+     This routine computes the confluent hypergeometric function
+     U(m,n,x) for integer parameters M, N using the `gsl_sf_result_e10'
+     type to return a result with extended range.
+
+ -- Function: double gsl_sf_hyperg_U (double A, double B, double X)
+ -- Function: int gsl_sf_hyperg_U_e (double A, double B, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the confluent hypergeometric function
+     U(a,b,x).
+
+ -- Function: int gsl_sf_hyperg_U_e10_e (double A, double B, double X,
+          gsl_sf_result_e10 * RESULT)
+     This routine computes the confluent hypergeometric function
+     U(a,b,x) using the `gsl_sf_result_e10' type to return a result
+     with extended range.
+
+ -- Function: double gsl_sf_hyperg_2F1 (double A, double B, double C,
+          double X)
+ -- Function: int gsl_sf_hyperg_2F1_e (double A, double B, double C,
+          double X, gsl_sf_result * RESULT)
+     These routines compute the Gauss hypergeometric function
+     2F1(a,b,c,x) = F(a,b,c,x) for |x| < 1.
+
+     If the arguments (a,b,c,x) are too close to a singularity then the
+     function can return the error code `GSL_EMAXITER' when the series
+     approximation converges too slowly.  This occurs in the region of
+     x=1, c - a - b = m for integer m.
+
+ -- Function: double gsl_sf_hyperg_2F1_conj (double AR, double AI,
+          double C, double X)
+ -- Function: int gsl_sf_hyperg_2F1_conj_e (double AR, double AI,
+          double C, double X, gsl_sf_result * RESULT)
+     These routines compute the Gauss hypergeometric function 2F1(a_R +
+     i a_I, a_R - i a_I, c, x) with complex parameters for |x| < 1.
+
+ -- Function: double gsl_sf_hyperg_2F1_renorm (double A, double B,
+          double C, double X)
+ -- Function: int gsl_sf_hyperg_2F1_renorm_e (double A, double B,
+          double C, double X, gsl_sf_result * RESULT)
+     These routines compute the renormalized Gauss hypergeometric
+     function 2F1(a,b,c,x) / \Gamma(c) for |x| < 1.
+
+ -- Function: double gsl_sf_hyperg_2F1_conj_renorm (double AR, double
+          AI, double C, double X)
+ -- Function: int gsl_sf_hyperg_2F1_conj_renorm_e (double AR, double
+          AI, double C, double X, gsl_sf_result * RESULT)
+     These routines compute the renormalized Gauss hypergeometric
+     function 2F1(a_R + i a_I, a_R - i a_I, c, x) / \Gamma(c) for |x| <
+     1.
+
+ -- Function: double gsl_sf_hyperg_2F0 (double A, double B, double X)
+ -- Function: int gsl_sf_hyperg_2F0_e (double A, double B, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the hypergeometric function 2F0(a,b,x).
+     The series representation is a divergent hypergeometric series.
+     However, for x < 0 we have 2F0(a,b,x) = (-1/x)^a U(a,1+a-b,-1/x)
+
+\1f
+File: gsl-ref.info,  Node: Laguerre Functions,  Next: Lambert W Functions,  Prev: Hypergeometric Functions,  Up: Special Functions
+
+7.22 Laguerre Functions
+=======================
+
+The generalized Laguerre polynomials are defined in terms of confluent
+hypergeometric functions as L^a_n(x) = ((a+1)_n / n!) 1F1(-n,a+1,x),
+and are sometimes referred to as the associated Laguerre polynomials.
+They are related to the plain Laguerre polynomials L_n(x) by L^0_n(x) =
+L_n(x) and L^k_n(x) = (-1)^k (d^k/dx^k) L_(n+k)(x).  For more
+information see Abramowitz & Stegun, Chapter 22.
+
+   The functions described in this section are declared in the header
+file `gsl_sf_laguerre.h'.
+
+ -- Function: double gsl_sf_laguerre_1 (double A, double X)
+ -- Function: double gsl_sf_laguerre_2 (double A, double X)
+ -- Function: double gsl_sf_laguerre_3 (double A, double X)
+ -- Function: int gsl_sf_laguerre_1_e (double A, double X,
+          gsl_sf_result * RESULT)
+ -- Function: int gsl_sf_laguerre_2_e (double A, double X,
+          gsl_sf_result * RESULT)
+ -- Function: int gsl_sf_laguerre_3_e (double A, double X,
+          gsl_sf_result * RESULT)
+     These routines evaluate the generalized Laguerre polynomials
+     L^a_1(x), L^a_2(x), L^a_3(x) using explicit representations.
+
+ -- Function: double gsl_sf_laguerre_n (const int N, const double A,
+          const double X)
+ -- Function: int gsl_sf_laguerre_n_e (int N, double A, double X,
+          gsl_sf_result * RESULT)
+     These routines evaluate the generalized Laguerre polynomials
+     L^a_n(x) for a > -1, n >= 0.
+
+
+\1f
+File: gsl-ref.info,  Node: Lambert W Functions,  Next: Legendre Functions and Spherical Harmonics,  Prev: Laguerre Functions,  Up: Special Functions
+
+7.23 Lambert W Functions
+========================
+
+Lambert's W functions, W(x), are defined to be solutions of the
+equation W(x) \exp(W(x)) = x. This function has multiple branches for x
+< 0; however, it has only two real-valued branches. We define W_0(x) to
+be the principal branch, where W > -1 for x < 0, and W_{-1}(x) to be
+the other real branch, where W < -1 for x < 0.  The Lambert functions
+are declared in the header file `gsl_sf_lambert.h'.
+
+ -- Function: double gsl_sf_lambert_W0 (double X)
+ -- Function: int gsl_sf_lambert_W0_e (double X, gsl_sf_result * RESULT)
+     These compute the principal branch of the Lambert W function,
+     W_0(x).
+
+ -- Function: double gsl_sf_lambert_Wm1 (double X)
+ -- Function: int gsl_sf_lambert_Wm1_e (double X, gsl_sf_result *
+          RESULT)
+     These compute the secondary real-valued branch of the Lambert W
+     function, W_{-1}(x).
+
+\1f
+File: gsl-ref.info,  Node: Legendre Functions and Spherical Harmonics,  Next: Logarithm and Related Functions,  Prev: Lambert W Functions,  Up: Special Functions
+
+7.24 Legendre Functions and Spherical Harmonics
+===============================================
+
+The Legendre Functions and Legendre Polynomials are described in
+Abramowitz & Stegun, Chapter 8.  These functions are declared in the
+header file `gsl_sf_legendre.h'.
+
+* Menu:
+
+* Legendre Polynomials::
+* Associated Legendre Polynomials and Spherical Harmonics::
+* Conical Functions::
+* Radial Functions for Hyperbolic Space::
+
+\1f
+File: gsl-ref.info,  Node: Legendre Polynomials,  Next: Associated Legendre Polynomials and Spherical Harmonics,  Up: Legendre Functions and Spherical Harmonics
+
+7.24.1 Legendre Polynomials
+---------------------------
+
+ -- Function: double gsl_sf_legendre_P1 (double X)
+ -- Function: double gsl_sf_legendre_P2 (double X)
+ -- Function: double gsl_sf_legendre_P3 (double X)
+ -- Function: int gsl_sf_legendre_P1_e (double X, gsl_sf_result *
+          RESULT)
+ -- Function: int gsl_sf_legendre_P2_e (double X, gsl_sf_result *
+          RESULT)
+ -- Function: int gsl_sf_legendre_P3_e (double X, gsl_sf_result *
+          RESULT)
+     These functions evaluate the Legendre polynomials P_l(x) using
+     explicit representations for l=1, 2, 3.
+
+ -- Function: double gsl_sf_legendre_Pl (int L, double X)
+ -- Function: int gsl_sf_legendre_Pl_e (int L, double X, gsl_sf_result
+          * RESULT)
+     These functions evaluate the Legendre polynomial P_l(x) for a
+     specific value of L, X subject to l >= 0, |x| <= 1
+
+ -- Function: int gsl_sf_legendre_Pl_array (int LMAX, double X, double
+          RESULT_ARRAY[])
+ -- Function: int gsl_sf_legendre_Pl_deriv_array (int LMAX, double X,
+          double RESULT_ARRAY[], double RESULT_DERIV_ARRAY[])
+     These functions compute arrays of Legendre polynomials P_l(x) and
+     derivatives dP_l(x)/dx, for l = 0, \dots, lmax, |x| <= 1
+
+ -- Function: double gsl_sf_legendre_Q0 (double X)
+ -- Function: int gsl_sf_legendre_Q0_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the Legendre function Q_0(x) for x > -1, x
+     != 1.
+
+ -- Function: double gsl_sf_legendre_Q1 (double X)
+ -- Function: int gsl_sf_legendre_Q1_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the Legendre function Q_1(x) for x > -1, x
+     != 1.
+
+ -- Function: double gsl_sf_legendre_Ql (int L, double X)
+ -- Function: int gsl_sf_legendre_Ql_e (int L, double X, gsl_sf_result
+          * RESULT)
+     These routines compute the Legendre function Q_l(x) for x > -1, x
+     != 1 and l >= 0.
+
+\1f
+File: gsl-ref.info,  Node: Associated Legendre Polynomials and Spherical Harmonics,  Next: Conical Functions,  Prev: Legendre Polynomials,  Up: Legendre Functions and Spherical Harmonics
+
+7.24.2 Associated Legendre Polynomials and Spherical Harmonics
+--------------------------------------------------------------
+
+The following functions compute the associated Legendre Polynomials
+P_l^m(x).  Note that this function grows combinatorially with l and can
+overflow for l larger than about 150.  There is no trouble for small m,
+but overflow occurs when m and l are both large.  Rather than allow
+overflows, these functions refuse to calculate P_l^m(x) and return
+`GSL_EOVRFLW' when they can sense that l and m are too big.
+
+   If you want to calculate a spherical harmonic, then _do not_ use
+these functions.  Instead use `gsl_sf_legendre_sphPlm' below, which
+uses a similar recursion, but with the normalized functions.
+
+ -- Function: double gsl_sf_legendre_Plm (int L, int M, double X)
+ -- Function: int gsl_sf_legendre_Plm_e (int L, int M, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the associated Legendre polynomial P_l^m(x)
+     for m >= 0, l >= m, |x| <= 1.
+
+ -- Function: int gsl_sf_legendre_Plm_array (int LMAX, int M, double X,
+          double RESULT_ARRAY[])
+ -- Function: int gsl_sf_legendre_Plm_deriv_array (int LMAX, int M,
+          double X, double RESULT_ARRAY[], double RESULT_DERIV_ARRAY[])
+     These functions compute arrays of Legendre polynomials P_l^m(x)
+     and derivatives dP_l^m(x)/dx, for m >= 0, l = |m|, ..., lmax, |x|
+     <= 1.
+
+ -- Function: double gsl_sf_legendre_sphPlm (int L, int M, double X)
+ -- Function: int gsl_sf_legendre_sphPlm_e (int L, int M, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the normalized associated Legendre
+     polynomial \sqrt{(2l+1)/(4\pi)} \sqrt{(l-m)!/(l+m)!} P_l^m(x)
+     suitable for use in spherical harmonics.  The parameters must
+     satisfy m >= 0, l >= m, |x| <= 1. Theses routines avoid the
+     overflows that occur for the standard normalization of P_l^m(x).
+
+ -- Function: int gsl_sf_legendre_sphPlm_array (int LMAX, int M, double
+          X, double RESULT_ARRAY[])
+ -- Function: int gsl_sf_legendre_sphPlm_deriv_array (int LMAX, int M,
+          double X, double RESULT_ARRAY[], double RESULT_DERIV_ARRAY[])
+     These functions compute arrays of normalized associated Legendre
+     functions \sqrt{(2l+1)/(4\pi)} \sqrt{(l-m)!/(l+m)!} P_l^m(x), and
+     derivatives, for m >= 0, l = |m|, ..., lmax, |x| <= 1.0
+
+ -- Function: int gsl_sf_legendre_array_size (const int LMAX, const int
+          M)
+     This function returns the size of RESULT_ARRAY[] needed for the
+     array versions of P_l^m(x), LMAX - M + 1.  An inline version of
+     this function is used when `HAVE_INLINE' is defined.
+
+\1f
+File: gsl-ref.info,  Node: Conical Functions,  Next: Radial Functions for Hyperbolic Space,  Prev: Associated Legendre Polynomials and Spherical Harmonics,  Up: Legendre Functions and Spherical Harmonics
+
+7.24.3 Conical Functions
+------------------------
+
+The Conical Functions P^\mu_{-(1/2)+i\lambda}(x) and
+Q^\mu_{-(1/2)+i\lambda} are described in Abramowitz & Stegun, Section
+8.12.
+
+ -- Function: double gsl_sf_conicalP_half (double LAMBDA, double X)
+ -- Function: int gsl_sf_conicalP_half_e (double LAMBDA, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the irregular Spherical Conical Function
+     P^{1/2}_{-1/2 + i \lambda}(x) for x > -1.
+
+ -- Function: double gsl_sf_conicalP_mhalf (double LAMBDA, double X)
+ -- Function: int gsl_sf_conicalP_mhalf_e (double LAMBDA, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the regular Spherical Conical Function
+     P^{-1/2}_{-1/2 + i \lambda}(x) for x > -1.
+
+ -- Function: double gsl_sf_conicalP_0 (double LAMBDA, double X)
+ -- Function: int gsl_sf_conicalP_0_e (double LAMBDA, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the conical function P^0_{-1/2 + i
+     \lambda}(x) for x > -1.
+
+ -- Function: double gsl_sf_conicalP_1 (double LAMBDA, double X)
+ -- Function: int gsl_sf_conicalP_1_e (double LAMBDA, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the conical function P^1_{-1/2 + i
+     \lambda}(x) for x > -1.
+
+ -- Function: double gsl_sf_conicalP_sph_reg (int L, double LAMBDA,
+          double X)
+ -- Function: int gsl_sf_conicalP_sph_reg_e (int L, double LAMBDA,
+          double X, gsl_sf_result * RESULT)
+     These routines compute the Regular Spherical Conical Function
+     P^{-1/2-l}_{-1/2 + i \lambda}(x) for x > -1, l >= -1.
+
+ -- Function: double gsl_sf_conicalP_cyl_reg (int M, double LAMBDA,
+          double X)
+ -- Function: int gsl_sf_conicalP_cyl_reg_e (int M, double LAMBDA,
+          double X, gsl_sf_result * RESULT)
+     These routines compute the Regular Cylindrical Conical Function
+     P^{-m}_{-1/2 + i \lambda}(x) for x > -1, m >= -1.
+
+\1f
+File: gsl-ref.info,  Node: Radial Functions for Hyperbolic Space,  Prev: Conical Functions,  Up: Legendre Functions and Spherical Harmonics
+
+7.24.4 Radial Functions for Hyperbolic Space
+--------------------------------------------
+
+The following spherical functions are specializations of Legendre
+functions which give the regular eigenfunctions of the Laplacian on a
+3-dimensional hyperbolic space H3d.  Of particular interest is the flat
+limit, \lambda \to \infty, \eta \to 0, \lambda\eta fixed.
+
+ -- Function: double gsl_sf_legendre_H3d_0 (double LAMBDA, double ETA)
+ -- Function: int gsl_sf_legendre_H3d_0_e (double LAMBDA, double ETA,
+          gsl_sf_result * RESULT)
+     These routines compute the zeroth radial eigenfunction of the
+     Laplacian on the 3-dimensional hyperbolic space,
+     L^{H3d}_0(\lambda,\eta) := \sin(\lambda\eta)/(\lambda\sinh(\eta))
+     for \eta >= 0.  In the flat limit this takes the form
+     L^{H3d}_0(\lambda,\eta) = j_0(\lambda\eta).
+
+ -- Function: double gsl_sf_legendre_H3d_1 (double LAMBDA, double ETA)
+ -- Function: int gsl_sf_legendre_H3d_1_e (double LAMBDA, double ETA,
+          gsl_sf_result * RESULT)
+     These routines compute the first radial eigenfunction of the
+     Laplacian on the 3-dimensional hyperbolic space,
+     L^{H3d}_1(\lambda,\eta) := 1/\sqrt{\lambda^2 + 1} \sin(\lambda
+     \eta)/(\lambda \sinh(\eta)) (\coth(\eta) - \lambda
+     \cot(\lambda\eta)) for \eta >= 0.  In the flat limit this takes
+     the form L^{H3d}_1(\lambda,\eta) = j_1(\lambda\eta).
+
+ -- Function: double gsl_sf_legendre_H3d (int L, double LAMBDA, double
+          ETA)
+ -- Function: int gsl_sf_legendre_H3d_e (int L, double LAMBDA, double
+          ETA, gsl_sf_result * RESULT)
+     These routines compute the L-th radial eigenfunction of the
+     Laplacian on the 3-dimensional hyperbolic space \eta >= 0, l >= 0.
+     In the flat limit this takes the form L^{H3d}_l(\lambda,\eta) =
+     j_l(\lambda\eta).
+
+ -- Function: int gsl_sf_legendre_H3d_array (int LMAX, double LAMBDA,
+          double ETA, double RESULT_ARRAY[])
+     This function computes an array of radial eigenfunctions
+     L^{H3d}_l(\lambda, \eta) for 0 <= l <= lmax.
+
+\1f
+File: gsl-ref.info,  Node: Logarithm and Related Functions,  Next: Mathieu Functions,  Prev: Legendre Functions and Spherical Harmonics,  Up: Special Functions
+
+7.25 Logarithm and Related Functions
+====================================
+
+Information on the properties of the Logarithm function can be found in
+Abramowitz & Stegun, Chapter 4.  The functions described in this section
+are declared in the header file `gsl_sf_log.h'.
+
+ -- Function: double gsl_sf_log (double X)
+ -- Function: int gsl_sf_log_e (double X, gsl_sf_result * RESULT)
+     These routines compute the logarithm of X, \log(x), for x > 0.
+
+ -- Function: double gsl_sf_log_abs (double X)
+ -- Function: int gsl_sf_log_abs_e (double X, gsl_sf_result * RESULT)
+     These routines compute the logarithm of the magnitude of X,
+     \log(|x|), for x \ne 0.
+
+ -- Function: int gsl_sf_complex_log_e (double ZR, double ZI,
+          gsl_sf_result * LNR, gsl_sf_result * THETA)
+     This routine computes the complex logarithm of z = z_r + i z_i.
+     The results are returned as LNR, THETA such that \exp(lnr + i
+     \theta) = z_r + i z_i, where \theta lies in the range [-\pi,\pi].
+
+ -- Function: double gsl_sf_log_1plusx (double X)
+ -- Function: int gsl_sf_log_1plusx_e (double X, gsl_sf_result * RESULT)
+     These routines compute \log(1 + x) for x > -1 using an algorithm
+     that is accurate for small x.
+
+ -- Function: double gsl_sf_log_1plusx_mx (double X)
+ -- Function: int gsl_sf_log_1plusx_mx_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute \log(1 + x) - x for x > -1 using an
+     algorithm that is accurate for small x.
+
+\1f
+File: gsl-ref.info,  Node: Mathieu Functions,  Next: Power Function,  Prev: Logarithm and Related Functions,  Up: Special Functions
+
+7.26 Mathieu Functions
+======================
+
+The routines described in this section compute the angular and radial
+Mathieu functions, and their characteristic values.  Mathieu functions
+are the solutions of the following two differential equations:
+
+     d^2y/dv^2 + (a - 2q\cos 2v)y = 0
+     d^2f/du^2 - (a - 2q\cosh 2u)f = 0
+
+The angular Mathieu functions ce_r(x,q), se_r(x,q) are the even and odd
+periodic solutions of the first equation, which is known as Mathieu's
+equation. These exist only for the discrete sequence of  characteristic
+values a=a_r(q) (even-periodic) and a=b_r(q) (odd-periodic).
+
+   The radial Mathieu functions Mc^{(j)}_{r}(z,q), Ms^{(j)}_{r}(z,q)
+are the solutions of the second equation, which is referred to as
+Mathieu's modified equation.  The radial Mathieu functions of the
+first, second, third and fourth kind are denoted by the parameter j,
+which takes the value 1, 2, 3 or 4.
+
+   For more information on the Mathieu functions, see Abramowitz and
+Stegun, Chapter 20.  These functions are defined in the header file
+`gsl_sf_mathieu.h'.
+
+* Menu:
+
+* Mathieu Function Workspace::
+* Mathieu Function Characteristic Values::
+* Angular Mathieu Functions::
+* Radial Mathieu Functions::
+
+\1f
+File: gsl-ref.info,  Node: Mathieu Function Workspace,  Next: Mathieu Function Characteristic Values,  Up: Mathieu Functions
+
+7.26.1 Mathieu Function Workspace
+---------------------------------
+
+The Mathieu functions can be computed for a single order or for
+multiple orders, using array-based routines.  The array-based routines
+require a preallocated workspace.
+
+ -- Function: gsl_sf_mathieu_workspace * gsl_sf_mathieu_alloc (size_t
+          N, double QMAX)
+     This function returns a workspace for the array versions of the
+     Mathieu routines.  The arguments N and QMAX specify the maximum
+     order and q-value of Mathieu functions which can be computed with
+     this workspace.
+
+
+ -- Function: void gsl_sf_mathieu_free (gsl_sf_mathieu_workspace * WORK)
+     This function frees the workspace WORK.
+
+\1f
+File: gsl-ref.info,  Node: Mathieu Function Characteristic Values,  Next: Angular Mathieu Functions,  Prev: Mathieu Function Workspace,  Up: Mathieu Functions
+
+7.26.2 Mathieu Function Characteristic Values
+---------------------------------------------
+
+ -- Function: int gsl_sf_mathieu_a (int N, double Q, gsl_sf_result *
+          RESULT)
+ -- Function: int gsl_sf_mathieu_b (int N, double Q, gsl_sf_result *
+          RESULT)
+     These routines compute the characteristic values a_n(q), b_n(q) of
+     the Mathieu functions ce_n(q,x) and se_n(q,x), respectively.
+
+ -- Function: int gsl_sf_mathieu_a_array (int ORDER_MIN, int ORDER_MAX,
+          double Q, gsl_sf_mathieu_workspace * WORK, double
+          RESULT_ARRAY[])
+ -- Function: int gsl_sf_mathieu_b_array (int ORDER_MIN, int ORDER_MAX,
+          double Q, gsl_sf_mathieu_workspace * WORK, double
+          RESULT_ARRAY[])
+     These routines compute a series of Mathieu characteristic values
+     a_n(q), b_n(q) for n from ORDER_MIN to ORDER_MAX inclusive,
+     storing the results in the array RESULT_ARRAY.
+
+\1f
+File: gsl-ref.info,  Node: Angular Mathieu Functions,  Next: Radial Mathieu Functions,  Prev: Mathieu Function Characteristic Values,  Up: Mathieu Functions
+
+7.26.3 Angular Mathieu Functions
+--------------------------------
+
+ -- Function: int gsl_sf_mathieu_ce (int N, double Q, double X,
+          gsl_sf_result * RESULT)
+ -- Function: int gsl_sf_mathieu_se (int N, double Q, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the angular Mathieu functions ce_n(q,x) and
+     se_n(q,x), respectively.
+
+ -- Function: int gsl_sf_mathieu_ce_array (int NMIN, int NMAX, double
+          Q, double X, gsl_sf_mathieu_workspace * WORK, double
+          RESULT_ARRAY[])
+ -- Function: int gsl_sf_mathieu_se_array (int NMIN, int NMAX, double
+          Q, double X, gsl_sf_mathieu_workspace * WORK, double
+          RESULT_ARRAY[])
+     These routines compute a series of the angular Mathieu functions
+     ce_n(q,x) and se_n(q,x) of order n from NMIN to NMAX inclusive,
+     storing the results in the array RESULT_ARRAY.
+
+\1f
+File: gsl-ref.info,  Node: Radial Mathieu Functions,  Prev: Angular Mathieu Functions,  Up: Mathieu Functions
+
+7.26.4 Radial Mathieu Functions
+-------------------------------
+
+ -- Function: int gsl_sf_mathieu_Mc (int J, int N, double Q, double X,
+          gsl_sf_result * RESULT)
+ -- Function: int gsl_sf_mathieu_Ms (int J, int N, double Q, double X,
+          gsl_sf_result * RESULT)
+     These routines compute the radial J-th kind Mathieu functions
+     Mc_n^{(j)}(q,x) and Ms_n^{(j)}(q,x) of order N.
+
+     The allowed values of J are 1 and 2.  The functions for j = 3,4
+     can be computed as M_n^{(3)} = M_n^{(1)} + iM_n^{(2)} and
+     M_n^{(4)} = M_n^{(1)} - iM_n^{(2)}, where M_n^{(j)} = Mc_n^{(j)} or
+     Ms_n^{(j)}.
+
+ -- Function: int gsl_sf_mathieu_Mc_array (int J, int NMIN, int NMAX,
+          double Q, double X, gsl_sf_mathieu_workspace * WORK, double
+          RESULT_ARRAY[])
+ -- Function: int gsl_sf_mathieu_Ms_array (int J, int NMIN, int NMAX,
+          double Q, double X, gsl_sf_mathieu_workspace * WORK, double
+          RESULT_ARRAY[])
+     These routines compute a series of the radial Mathieu functions of
+     kind J, with order from NMIN to NMAX inclusive, storing the
+     results in the array RESULT_ARRAY.
+
+\1f
+File: gsl-ref.info,  Node: Power Function,  Next: Psi (Digamma) Function,  Prev: Mathieu Functions,  Up: Special Functions
+
+7.27 Power Function
+===================
+
+The following functions are equivalent to the function `gsl_pow_int'
+(*note Small integer powers::) with an error estimate.  These functions
+are declared in the header file `gsl_sf_pow_int.h'.
+
+ -- Function: double gsl_sf_pow_int (double X, int N)
+ -- Function: int gsl_sf_pow_int_e (double X, int N, gsl_sf_result *
+          RESULT)
+     These routines compute the power x^n for integer N.  The power is
+     computed using the minimum number of multiplications. For example,
+     x^8 is computed as ((x^2)^2)^2, requiring only 3 multiplications.
+     For reasons of efficiency, these functions do not check for
+     overflow or underflow conditions.
+
+     #include <gsl/gsl_sf_pow_int.h>
+     /* compute 3.0**12 */
+     double y = gsl_sf_pow_int(3.0, 12);
+
+\1f
+File: gsl-ref.info,  Node: Psi (Digamma) Function,  Next: Synchrotron Functions,  Prev: Power Function,  Up: Special Functions
+
+7.28 Psi (Digamma) Function
+===========================
+
+The polygamma functions of order n are defined by
+
+     \psi^{(n)}(x) = (d/dx)^n \psi(x) = (d/dx)^{n+1} \log(\Gamma(x))
+
+where \psi(x) = \Gamma'(x)/\Gamma(x) is known as the digamma function.
+These functions are declared in the header file `gsl_sf_psi.h'.
+
+* Menu:
+
+* Digamma Function::
+* Trigamma Function::
+* Polygamma Function::
+
+\1f
+File: gsl-ref.info,  Node: Digamma Function,  Next: Trigamma Function,  Up: Psi (Digamma) Function
+
+7.28.1 Digamma Function
+-----------------------
+
+ -- Function: double gsl_sf_psi_int (int N)
+ -- Function: int gsl_sf_psi_int_e (int N, gsl_sf_result * RESULT)
+     These routines compute the digamma function \psi(n) for positive
+     integer N.  The digamma function is also called the Psi function.
+
+ -- Function: double gsl_sf_psi (double X)
+ -- Function: int gsl_sf_psi_e (double X, gsl_sf_result * RESULT)
+     These routines compute the digamma function \psi(x) for general x,
+     x \ne 0.
+
+ -- Function: double gsl_sf_psi_1piy (double Y)
+ -- Function: int gsl_sf_psi_1piy_e (double Y, gsl_sf_result * RESULT)
+     These routines compute the real part of the digamma function on
+     the line 1+i y, \Re[\psi(1 + i y)].
+
+\1f
+File: gsl-ref.info,  Node: Trigamma Function,  Next: Polygamma Function,  Prev: Digamma Function,  Up: Psi (Digamma) Function
+
+7.28.2 Trigamma Function
+------------------------
+
+ -- Function: double gsl_sf_psi_1_int (int N)
+ -- Function: int gsl_sf_psi_1_int_e (int N, gsl_sf_result * RESULT)
+     These routines compute the Trigamma function \psi'(n) for positive
+     integer n.
+
+ -- Function: double gsl_sf_psi_1 (double X)
+ -- Function: int gsl_sf_psi_1_e (double X, gsl_sf_result * RESULT)
+     These routines compute the Trigamma function \psi'(x) for general
+     x.
+
+\1f
+File: gsl-ref.info,  Node: Polygamma Function,  Prev: Trigamma Function,  Up: Psi (Digamma) Function
+
+7.28.3 Polygamma Function
+-------------------------
+
+ -- Function: double gsl_sf_psi_n (int N, double X)
+ -- Function: int gsl_sf_psi_n_e (int N, double X, gsl_sf_result *
+          RESULT)
+     These routines compute the polygamma function \psi^{(n)}(x) for n
+     >= 0, x > 0.
+
+\1f
+File: gsl-ref.info,  Node: Synchrotron Functions,  Next: Transport Functions,  Prev: Psi (Digamma) Function,  Up: Special Functions
+
+7.29 Synchrotron Functions
+==========================
+
+The functions described in this section are declared in the header file
+`gsl_sf_synchrotron.h'.
+
+ -- Function: double gsl_sf_synchrotron_1 (double X)
+ -- Function: int gsl_sf_synchrotron_1_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the first synchrotron function x
+     \int_x^\infty dt K_{5/3}(t) for x >= 0.
+
+ -- Function: double gsl_sf_synchrotron_2 (double X)
+ -- Function: int gsl_sf_synchrotron_2_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the second synchrotron function x
+     K_{2/3}(x) for x >= 0.
+
+\1f
+File: gsl-ref.info,  Node: Transport Functions,  Next: Trigonometric Functions,  Prev: Synchrotron Functions,  Up: Special Functions
+
+7.30 Transport Functions
+========================
+
+The transport functions J(n,x) are defined by the integral
+representations J(n,x) := \int_0^x dt t^n e^t /(e^t - 1)^2.  They are
+declared in the header file `gsl_sf_transport.h'.
+
+ -- Function: double gsl_sf_transport_2 (double X)
+ -- Function: int gsl_sf_transport_2_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the transport function J(2,x).
+
+ -- Function: double gsl_sf_transport_3 (double X)
+ -- Function: int gsl_sf_transport_3_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the transport function J(3,x).
+
+ -- Function: double gsl_sf_transport_4 (double X)
+ -- Function: int gsl_sf_transport_4_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the transport function J(4,x).
+
+ -- Function: double gsl_sf_transport_5 (double X)
+ -- Function: int gsl_sf_transport_5_e (double X, gsl_sf_result *
+          RESULT)
+     These routines compute the transport function J(5,x).
+
+\1f
+File: gsl-ref.info,  Node: Trigonometric Functions,  Next: Zeta Functions,  Prev: Transport Functions,  Up: Special Functions
+
+7.31 Trigonometric Functions
+============================
+
+The library includes its own trigonometric functions in order to provide
+consistency across platforms and reliable error estimates.  These
+functions are declared in the header file `gsl_sf_trig.h'.
+
+* Menu:
+
+* Circular Trigonometric Functions::
+* Trigonometric Functions for Complex Arguments::
+* Hyperbolic Trigonometric Functions::
+* Conversion Functions::
+* Restriction Functions::
+* Trigonometric Functions With Error Estimates::
+
+\1f
+File: gsl-ref.info,  Node: Circular Trigonometric Functions,  Next: Trigonometric Functions for Complex Arguments,  Up: Trigonometric Functions
+
+7.31.1 Circular Trigonometric Functions
+---------------------------------------
+
+ -- Function: double gsl_sf_sin (double X)
+ -- Function: int gsl_sf_sin_e (double X, gsl_sf_result * RESULT)
+     These routines compute the sine function \sin(x).
+
+ -- Function: double gsl_sf_cos (double X)
+ -- Function: int gsl_sf_cos_e (double X, gsl_sf_result * RESULT)
+     These routines compute the cosine function \cos(x).
+
+ -- Function: double gsl_sf_hypot (double X, double Y)
+ -- Function: int gsl_sf_hypot_e (double X, double Y, gsl_sf_result *
+          RESULT)
+     These routines compute the hypotenuse function \sqrt{x^2 + y^2}
+     avoiding overflow and underflow.
+
+ -- Function: double gsl_sf_sinc (double X)
+ -- Function: int gsl_sf_sinc_e (double X, gsl_sf_result * RESULT)
+     These routines compute \sinc(x) = \sin(\pi x) / (\pi x) for any
+     value of X.
+
+\1f
+File: gsl-ref.info,  Node: Trigonometric Functions for Complex Arguments,  Next: Hyperbolic Trigonometric Functions,  Prev: Circular Trigonometric Functions,  Up: Trigonometric Functions
+
+7.31.2 Trigonometric Functions for Complex Arguments
+----------------------------------------------------
+
+ -- Function: int gsl_sf_complex_sin_e (double ZR, double ZI,
+          gsl_sf_result * SZR, gsl_sf_result * SZI)
+     This function computes the complex sine, \sin(z_r + i z_i) storing
+     the real and imaginary parts in SZR, SZI.
+
+ -- Function: int gsl_sf_complex_cos_e (double ZR, double ZI,
+          gsl_sf_result * CZR, gsl_sf_result * CZI)
+     This function computes the complex cosine, \cos(z_r + i z_i)
+     storing the real and imaginary parts in CZR, CZI.
+
+ -- Function: int gsl_sf_complex_logsin_e (double ZR, double ZI,
+          gsl_sf_result * LSZR, gsl_sf_result * LSZI)
+     This function computes the logarithm of the complex sine,
+     \log(\sin(z_r + i z_i)) storing the real and imaginary parts in
+     LSZR, LSZI.
+
+\1f
+File: gsl-ref.info,  Node: Hyperbolic Trigonometric Functions,  Next: Conversion Functions,  Prev: Trigonometric Functions for Complex Arguments,  Up: Trigonometric Functions
+
+7.31.3 Hyperbolic Trigonometric Functions
+-----------------------------------------
+
+ -- Function: double gsl_sf_lnsinh (double X)
+ -- Function: int gsl_sf_lnsinh_e (double X, gsl_sf_result * RESULT)
+     These routines compute \log(\sinh(x)) for x > 0.
+
+ -- Function: double gsl_sf_lncosh (double X)
+ -- Function: int gsl_sf_lncosh_e (double X, gsl_sf_result * RESULT)
+     These routines compute \log(\cosh(x)) for any X.
+
+\1f
+File: gsl-ref.info,  Node: Conversion Functions,  Next: Restriction Functions,  Prev: Hyperbolic Trigonometric Functions,  Up: Trigonometric Functions
+
+7.31.4 Conversion Functions
+---------------------------
+
+ -- Function: int gsl_sf_polar_to_rect (double R, double THETA,
+          gsl_sf_result * X, gsl_sf_result * Y);
+     This function converts the polar coordinates (R,THETA) to
+     rectilinear coordinates (X,Y), x = r\cos(\theta), y =
+     r\sin(\theta).
+
+ -- Function: int gsl_sf_rect_to_polar (double X, double Y,
+          gsl_sf_result * R, gsl_sf_result * THETA)
+     This function converts the rectilinear coordinates (X,Y) to polar
+     coordinates (R,THETA), such that x = r\cos(\theta), y =
+     r\sin(\theta).  The argument THETA lies in the range [-\pi, \pi].
+
+\1f
+File: gsl-ref.info,  Node: Restriction Functions,  Next: Trigonometric Functions With Error Estimates,  Prev: Conversion Functions,  Up: Trigonometric Functions
+
+7.31.5 Restriction Functions
+----------------------------
+
+ -- Function: double gsl_sf_angle_restrict_symm (double THETA)
+ -- Function: int gsl_sf_angle_restrict_symm_e (double * THETA)
+     These routines force the angle THETA to lie in the range
+     (-\pi,\pi].
+
+     Note that the mathematical value of \pi is slightly greater than
+     `M_PI', so the machine numbers `M_PI' and `-M_PI' are included in
+     the range.
+
+ -- Function: double gsl_sf_angle_restrict_pos (double THETA)
+ -- Function: int gsl_sf_angle_restrict_pos_e (double * THETA)
+     These routines force the angle THETA to lie in the range [0, 2\pi).
+
+     Note that the mathematical value of 2\pi is slightly greater than
+     `2*M_PI', so the machine number `2*M_PI' is included in the range.
+
+
+\1f
+File: gsl-ref.info,  Node: Trigonometric Functions With Error Estimates,  Prev: Restriction Functions,  Up: Trigonometric Functions
+
+7.31.6 Trigonometric Functions With Error Estimates
+---------------------------------------------------
+
+ -- Function: int gsl_sf_sin_err_e (double X, double DX, gsl_sf_result
+          * RESULT)
+     This routine computes the sine of an angle X with an associated
+     absolute error DX, \sin(x \pm dx).  Note that this function is
+     provided in the error-handling form only since its purpose is to
+     compute the propagated error.
+
+ -- Function: int gsl_sf_cos_err_e (double X, double DX, gsl_sf_result
+          * RESULT)
+     This routine computes the cosine of an angle X with an associated
+     absolute error DX, \cos(x \pm dx).  Note that this function is
+     provided in the error-handling form only since its purpose is to
+     compute the propagated error.
+
+\1f
+File: gsl-ref.info,  Node: Zeta Functions,  Next: Special Functions Examples,  Prev: Trigonometric Functions,  Up: Special Functions
+
+7.32 Zeta Functions
+===================
+
+The Riemann zeta function is defined in Abramowitz & Stegun, Section
+23.2.  The functions described in this section are declared in the
+header file `gsl_sf_zeta.h'.
+
+* Menu:
+
+* Riemann Zeta Function::
+* Riemann Zeta Function Minus One::
+* Hurwitz Zeta Function::
+* Eta Function::
+
+\1f
+File: gsl-ref.info,  Node: Riemann Zeta Function,  Next: Riemann Zeta Function Minus One,  Up: Zeta Functions
+
+7.32.1 Riemann Zeta Function
+----------------------------
+
+The Riemann zeta function is defined by the infinite sum \zeta(s) =
+\sum_{k=1}^\infty k^{-s}.
+
+ -- Function: double gsl_sf_zeta_int (int N)
+ -- Function: int gsl_sf_zeta_int_e (int N, gsl_sf_result * RESULT)
+     These routines compute the Riemann zeta function \zeta(n) for
+     integer N, n \ne 1.
+
+ -- Function: double gsl_sf_zeta (double S)
+ -- Function: int gsl_sf_zeta_e (double S, gsl_sf_result * RESULT)
+     These routines compute the Riemann zeta function \zeta(s) for
+     arbitrary S, s \ne 1.
+
+\1f
+File: gsl-ref.info,  Node: Riemann Zeta Function Minus One,  Next: Hurwitz Zeta Function,  Prev: Riemann Zeta Function,  Up: Zeta Functions
+
+7.32.2 Riemann Zeta Function Minus One
+--------------------------------------
+
+For large positive argument, the Riemann zeta function approaches one.
+In this region the fractional part is interesting, and therefore we
+need a function to evaluate it explicitly.
+
+ -- Function: double gsl_sf_zetam1_int (int N)
+ -- Function: int gsl_sf_zetam1_int_e (int N, gsl_sf_result * RESULT)
+     These routines compute \zeta(n) - 1 for integer N, n \ne 1.
+
+ -- Function: double gsl_sf_zetam1 (double S)
+ -- Function: int gsl_sf_zetam1_e (double S, gsl_sf_result * RESULT)
+     These routines compute \zeta(s) - 1 for arbitrary S, s \ne 1.
+
+\1f
+File: gsl-ref.info,  Node: Hurwitz Zeta Function,  Next: Eta Function,  Prev: Riemann Zeta Function Minus One,  Up: Zeta Functions
+
+7.32.3 Hurwitz Zeta Function
+----------------------------
+
+The Hurwitz zeta function is defined by \zeta(s,q) = \sum_0^\infty
+(k+q)^{-s}.
+
+ -- Function: double gsl_sf_hzeta (double S, double Q)
+ -- Function: int gsl_sf_hzeta_e (double S, double Q, gsl_sf_result *
+          RESULT)
+     These routines compute the Hurwitz zeta function \zeta(s,q) for s
+     > 1, q > 0.
+
+\1f
+File: gsl-ref.info,  Node: Eta Function,  Prev: Hurwitz Zeta Function,  Up: Zeta Functions
+
+7.32.4 Eta Function
+-------------------
+
+The eta function is defined by \eta(s) = (1-2^{1-s}) \zeta(s).
+
+ -- Function: double gsl_sf_eta_int (int N)
+ -- Function: int gsl_sf_eta_int_e (int N, gsl_sf_result * RESULT)
+     These routines compute the eta function \eta(n) for integer N.
+
+ -- Function: double gsl_sf_eta (double S)
+ -- Function: int gsl_sf_eta_e (double S, gsl_sf_result * RESULT)
+     These routines compute the eta function \eta(s) for arbitrary S.
+
+\1f
+File: gsl-ref.info,  Node: Special Functions Examples,  Next: Special Functions References and Further Reading,  Prev: Zeta Functions,  Up: Special Functions
+
+7.33 Examples
+=============
+
+The following example demonstrates the use of the error handling form of
+the special functions, in this case to compute the Bessel function
+J_0(5.0),
+
+     #include <stdio.h>
+     #include <gsl/gsl_errno.h>
+     #include <gsl/gsl_sf_bessel.h>
+
+     int
+     main (void)
+     {
+       double x = 5.0;
+       gsl_sf_result result;
+
+       double expected = -0.17759677131433830434739701;
+
+       int status = gsl_sf_bessel_J0_e (x, &result);
+
+       printf ("status  = %s\n", gsl_strerror(status));
+       printf ("J0(5.0) = %.18f\n"
+               "      +/- % .18f\n",
+               result.val, result.err);
+       printf ("exact   = %.18f\n", expected);
+       return status;
+     }
+
+Here are the results of running the program,
+
+     $ ./a.out
+     status  = success
+     J0(5.0) = -0.177596771314338292
+           +/-  0.000000000000000193
+     exact   = -0.177596771314338292
+
+The next program computes the same quantity using the natural form of
+the function. In this case the error term RESULT.ERR and return status
+are not accessible.
+
+     #include <stdio.h>
+     #include <gsl/gsl_sf_bessel.h>
+
+     int
+     main (void)
+     {
+       double x = 5.0;
+       double expected = -0.17759677131433830434739701;
+
+       double y = gsl_sf_bessel_J0 (x);
+
+       printf ("J0(5.0) = %.18f\n", y);
+       printf ("exact   = %.18f\n", expected);
+       return 0;
+     }
+
+The results of the function are the same,
+
+     $ ./a.out
+     J0(5.0) = -0.177596771314338292
+     exact   = -0.177596771314338292
+
+\1f
+File: gsl-ref.info,  Node: Special Functions References and Further Reading,  Prev: Special Functions Examples,  Up: Special Functions
+
+7.34 References and Further Reading
+===================================
+
+The library follows the conventions of `Abramowitz & Stegun' where
+possible,
+     Abramowitz & Stegun (eds.), `Handbook of Mathematical Functions'
+
+The following papers contain information on the algorithms used to
+compute the special functions, 
+     Allan J. MacLeod, MISCFUN: A software package to compute uncommon
+     special functions.  `ACM Trans. Math. Soft.', vol. 22, 1996,
+     288-301
+
+     G.N. Watson, A Treatise on the Theory of Bessel Functions, 2nd
+     Edition (Cambridge University Press, 1944).
+
+     G. Nemeth, Mathematical Approximations of Special Functions, Nova
+     Science Publishers, ISBN 1-56072-052-2
+
+     B.C. Carlson, Special Functions of Applied Mathematics (1977)
+
+     N. M. Temme, Special Functions: An Introduction to the Classical
+     Functions of Mathematical Physics (1996), ISBN 978-0471113133.
+
+     W.J. Thompson, Atlas for Computing Mathematical Functions, John
+     Wiley & Sons, New York (1997).
+
+     Y.Y. Luke, Algorithms for the Computation of Mathematical
+     Functions, Academic Press, New York (1977).
+
+
+\1f
+File: gsl-ref.info,  Node: Vectors and Matrices,  Next: Permutations,  Prev: Special Functions,  Up: Top
+
+8 Vectors and Matrices
+**********************
+
+The functions described in this chapter provide a simple vector and
+matrix interface to ordinary C arrays. The memory management of these
+arrays is implemented using a single underlying type, known as a block.
+By writing your functions in terms of vectors and matrices you can pass
+a single structure containing both data and dimensions as an argument
+without needing additional function parameters.  The structures are
+compatible with the vector and matrix formats used by BLAS routines.
+
+* Menu:
+
+* Data types::
+* Blocks::
+* Vectors::
+* Matrices::
+* Vector and Matrix References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Data types,  Next: Blocks,  Up: Vectors and Matrices
+
+8.1 Data types
+==============
+
+All the functions are available for each of the standard data-types.
+The versions for `double' have the prefix `gsl_block', `gsl_vector' and
+`gsl_matrix'.  Similarly the versions for single-precision `float'
+arrays have the prefix `gsl_block_float', `gsl_vector_float' and
+`gsl_matrix_float'.  The full list of available types is given below,
+
+     gsl_block                       double
+     gsl_block_float                 float
+     gsl_block_long_double           long double
+     gsl_block_int                   int
+     gsl_block_uint                  unsigned int
+     gsl_block_long                  long
+     gsl_block_ulong                 unsigned long
+     gsl_block_short                 short
+     gsl_block_ushort                unsigned short
+     gsl_block_char                  char
+     gsl_block_uchar                 unsigned char
+     gsl_block_complex               complex double
+     gsl_block_complex_float         complex float
+     gsl_block_complex_long_double   complex long double
+
+Corresponding types exist for the `gsl_vector' and `gsl_matrix'
+functions.
+
+\1f
+File: gsl-ref.info,  Node: Blocks,  Next: Vectors,  Prev: Data types,  Up: Vectors and Matrices
+
+8.2 Blocks
+==========
+
+For consistency all memory is allocated through a `gsl_block'
+structure.  The structure contains two components, the size of an area
+of memory and a pointer to the memory.  The `gsl_block' structure looks
+like this,
+
+     typedef struct
+     {
+       size_t size;
+       double * data;
+     } gsl_block;
+
+Vectors and matrices are made by "slicing" an underlying block. A slice
+is a set of elements formed from an initial offset and a combination of
+indices and step-sizes. In the case of a matrix the step-size for the
+column index represents the row-length.  The step-size for a vector is
+known as the "stride".
+
+   The functions for allocating and deallocating blocks are defined in
+`gsl_block.h'
+
+* Menu:
+
+* Block allocation::
+* Reading and writing blocks::
+* Example programs for blocks::
+
+\1f
+File: gsl-ref.info,  Node: Block allocation,  Next: Reading and writing blocks,  Up: Blocks
+
+8.2.1 Block allocation
+----------------------
+
+The functions for allocating memory to a block follow the style of
+`malloc' and `free'.  In addition they also perform their own error
+checking.  If there is insufficient memory available to allocate a
+block then the functions call the GSL error handler (with an error
+number of `GSL_ENOMEM') in addition to returning a null pointer.  Thus
+if you use the library error handler to abort your program then it
+isn't necessary to check every `alloc'.
+
+ -- Function: gsl_block * gsl_block_alloc (size_t N)
+     This function allocates memory for a block of N double-precision
+     elements, returning a pointer to the block struct.  The block is
+     not initialized and so the values of its elements are undefined.
+     Use the function `gsl_block_calloc' if you want to ensure that all
+     the elements are initialized to zero.
+
+     A null pointer is returned if insufficient memory is available to
+     create the block.
+
+ -- Function: gsl_block * gsl_block_calloc (size_t N)
+     This function allocates memory for a block and initializes all the
+     elements of the block to zero.
+
+ -- Function: void gsl_block_free (gsl_block * B)
+     This function frees the memory used by a block B previously
+     allocated with `gsl_block_alloc' or `gsl_block_calloc'.  The block
+     B must be a valid block object (a null pointer is not allowed).
+
+\1f
+File: gsl-ref.info,  Node: Reading and writing blocks,  Next: Example programs for blocks,  Prev: Block allocation,  Up: Blocks
+
+8.2.2 Reading and writing blocks
+--------------------------------
+
+The library provides functions for reading and writing blocks to a file
+as binary data or formatted text.
+
+ -- Function: int gsl_block_fwrite (FILE * STREAM, const gsl_block * B)
+     This function writes the elements of the block B to the stream
+     STREAM in binary format.  The return value is 0 for success and
+     `GSL_EFAILED' if there was a problem writing to the file.  Since
+     the data is written in the native binary format it may not be
+     portable between different architectures.
+
+ -- Function: int gsl_block_fread (FILE * STREAM, gsl_block * B)
+     This function reads into the block B from the open stream STREAM
+     in binary format.  The block B must be preallocated with the
+     correct length since the function uses the size of B to determine
+     how many bytes to read.  The return value is 0 for success and
+     `GSL_EFAILED' if there was a problem reading from the file.  The
+     data is assumed to have been written in the native binary format
+     on the same architecture.
+
+ -- Function: int gsl_block_fprintf (FILE * STREAM, const gsl_block *
+          B, const char * FORMAT)
+     This function writes the elements of the block B line-by-line to
+     the stream STREAM using the format specifier FORMAT, which should
+     be one of the `%g', `%e' or `%f' formats for floating point
+     numbers and `%d' for integers.  The function returns 0 for success
+     and `GSL_EFAILED' if there was a problem writing to the file.
+
+ -- Function: int gsl_block_fscanf (FILE * STREAM, gsl_block * B)
+     This function reads formatted data from the stream STREAM into the
+     block B.  The block B must be preallocated with the correct length
+     since the function uses the size of B to determine how many
+     numbers to read.  The function returns 0 for success and
+     `GSL_EFAILED' if there was a problem reading from the file.
+
+\1f
+File: gsl-ref.info,  Node: Example programs for blocks,  Prev: Reading and writing blocks,  Up: Blocks
+
+8.2.3 Example programs for blocks
+---------------------------------
+
+The following program shows how to allocate a block,
+
+     #include <stdio.h>
+     #include <gsl/gsl_block.h>
+
+     int
+     main (void)
+     {
+       gsl_block * b = gsl_block_alloc (100);
+
+       printf ("length of block = %u\n", b->size);
+       printf ("block data address = %#x\n", b->data);
+
+       gsl_block_free (b);
+       return 0;
+     }
+
+Here is the output from the program,
+
+     length of block = 100
+     block data address = 0x804b0d8
+
+\1f
+File: gsl-ref.info,  Node: Vectors,  Next: Matrices,  Prev: Blocks,  Up: Vectors and Matrices
+
+8.3 Vectors
+===========
+
+Vectors are defined by a `gsl_vector' structure which describes a slice
+of a block.  Different vectors can be created which point to the same
+block.  A vector slice is a set of equally-spaced elements of an area
+of memory.
+
+   The `gsl_vector' structure contains five components, the "size", the
+"stride", a pointer to the memory where the elements are stored, DATA,
+a pointer to the block owned by the vector, BLOCK, if any, and an
+ownership flag, OWNER.  The structure is very simple and looks like
+this,
+
+     typedef struct
+     {
+       size_t size;
+       size_t stride;
+       double * data;
+       gsl_block * block;
+       int owner;
+     } gsl_vector;
+
+The SIZE is simply the number of vector elements.  The range of valid
+indices runs from 0 to `size-1'.  The STRIDE is the step-size from one
+element to the next in physical memory, measured in units of the
+appropriate datatype.  The pointer DATA gives the location of the first
+element of the vector in memory.  The pointer BLOCK stores the location
+of the memory block in which the vector elements are located (if any).
+If the vector owns this block then the OWNER field is set to one and
+the block will be deallocated when the vector is freed.  If the vector
+points to a block owned by another object then the OWNER field is zero
+and any underlying block will not be deallocated with the vector.
+
+   The functions for allocating and accessing vectors are defined in
+`gsl_vector.h'
+
+* Menu:
+
+* Vector allocation::
+* Accessing vector elements::
+* Initializing vector elements::
+* Reading and writing vectors::
+* Vector views::
+* Copying vectors::
+* Exchanging elements::
+* Vector operations::
+* Finding maximum and minimum elements of vectors::
+* Vector properties::
+* Example programs for vectors::
+
+\1f
+File: gsl-ref.info,  Node: Vector allocation,  Next: Accessing vector elements,  Up: Vectors
+
+8.3.1 Vector allocation
+-----------------------
+
+The functions for allocating memory to a vector follow the style of
+`malloc' and `free'.  In addition they also perform their own error
+checking.  If there is insufficient memory available to allocate a
+vector then the functions call the GSL error handler (with an error
+number of `GSL_ENOMEM') in addition to returning a null pointer.  Thus
+if you use the library error handler to abort your program then it
+isn't necessary to check every `alloc'.
+
+ -- Function: gsl_vector * gsl_vector_alloc (size_t N)
+     This function creates a vector of length N, returning a pointer to
+     a newly initialized vector struct. A new block is allocated for the
+     elements of the vector, and stored in the BLOCK component of the
+     vector struct.  The block is "owned" by the vector, and will be
+     deallocated when the vector is deallocated.
+
+ -- Function: gsl_vector * gsl_vector_calloc (size_t N)
+     This function allocates memory for a vector of length N and
+     initializes all the elements of the vector to zero.
+
+ -- Function: void gsl_vector_free (gsl_vector * V)
+     This function frees a previously allocated vector V.  If the
+     vector was created using `gsl_vector_alloc' then the block
+     underlying the vector will also be deallocated.  If the vector has
+     been created from another object then the memory is still owned by
+     that object and will not be deallocated.  The vector V must be a
+     valid vector object (a null pointer is not allowed).
+
+\1f
+File: gsl-ref.info,  Node: Accessing vector elements,  Next: Initializing vector elements,  Prev: Vector allocation,  Up: Vectors
+
+8.3.2 Accessing vector elements
+-------------------------------
+
+Unlike FORTRAN compilers, C compilers do not usually provide support
+for range checking of vectors and matrices.(1)  The functions
+`gsl_vector_get' and `gsl_vector_set' can perform portable range
+checking for you and report an error if you attempt to access elements
+outside the allowed range.
+
+   The functions for accessing the elements of a vector or matrix are
+defined in `gsl_vector.h' and declared `extern inline' to eliminate
+function-call overhead.  You must compile your program with the
+preprocessor macro `HAVE_INLINE' defined to use these functions.
+
+   If necessary you can turn off range checking completely without
+modifying any source files by recompiling your program with the
+preprocessor definition `GSL_RANGE_CHECK_OFF'.  Provided your compiler
+supports inline functions the effect of turning off range checking is
+to replace calls to `gsl_vector_get(v,i)' by `v->data[i*v->stride]' and
+calls to `gsl_vector_set(v,i,x)' by `v->data[i*v->stride]=x'.  Thus
+there should be no performance penalty for using the range checking
+functions when range checking is turned off.
+
+   If you use a C99 compiler which requires inline functions in header
+files to be declared `inline' instead of `extern inline', define the
+macro `GSL_C99_INLINE' (*note Inline functions::).  With GCC this is
+selected automatically when compiling in C99 mode (`-std=c99').
+
+   If inline functions are not used, calls to the functions
+`gsl_vector_get' and `gsl_vector_set' will link to the compiled
+versions of these functions in the library itself.  The range checking
+in these functions is controlled by the global integer variable
+`gsl_check_range'.  It is enabled by default--to disable it, set
+`gsl_check_range' to zero.  Due to function-call overhead, there is
+less benefit in disabling range checking here than for inline functions.
+
+ -- Function: double gsl_vector_get (const gsl_vector * V, size_t I)
+     This function returns the I-th element of a vector V.  If I lies
+     outside the allowed range of 0 to N-1 then the error handler is
+     invoked and 0 is returned.  An inline version of this function is
+     used when `HAVE_INLINE' is defined.
+
+ -- Function: void gsl_vector_set (gsl_vector * V, size_t I, double X)
+     This function sets the value of the I-th element of a vector V to
+     X.  If I lies outside the allowed range of 0 to N-1 then the error
+     handler is invoked.  An inline version of this function is used
+     when `HAVE_INLINE' is defined.
+
+ -- Function: double * gsl_vector_ptr (gsl_vector * V, size_t I)
+ -- Function: const double * gsl_vector_const_ptr (const gsl_vector *
+          V, size_t I)
+     These functions return a pointer to the I-th element of a vector
+     V.  If I lies outside the allowed range of 0 to N-1 then the error
+     handler is invoked and a null pointer is returned.  Inline
+     versions of these functions are used when `HAVE_INLINE' is defined.
+
+   ---------- Footnotes ----------
+
+   (1) Range checking is available in the GNU C Compiler
+bounds-checking extension, but it is not part of the default
+installation of GCC. Memory accesses can also be checked with Valgrind
+or the `gcc -fmudflap' memory protection option.
+
+\1f
+File: gsl-ref.info,  Node: Initializing vector elements,  Next: Reading and writing vectors,  Prev: Accessing vector elements,  Up: Vectors
+
+8.3.3 Initializing vector elements
+----------------------------------
+
+ -- Function: void gsl_vector_set_all (gsl_vector * V, double X)
+     This function sets all the elements of the vector V to the value X.
+
+ -- Function: void gsl_vector_set_zero (gsl_vector * V)
+     This function sets all the elements of the vector V to zero.
+
+ -- Function: int gsl_vector_set_basis (gsl_vector * V, size_t I)
+     This function makes a basis vector by setting all the elements of
+     the vector V to zero except for the I-th element which is set to
+     one.
+
+\1f
+File: gsl-ref.info,  Node: Reading and writing vectors,  Next: Vector views,  Prev: Initializing vector elements,  Up: Vectors
+
+8.3.4 Reading and writing vectors
+---------------------------------
+
+The library provides functions for reading and writing vectors to a file
+as binary data or formatted text.
+
+ -- Function: int gsl_vector_fwrite (FILE * STREAM, const gsl_vector *
+          V)
+     This function writes the elements of the vector V to the stream
+     STREAM in binary format.  The return value is 0 for success and
+     `GSL_EFAILED' if there was a problem writing to the file.  Since
+     the data is written in the native binary format it may not be
+     portable between different architectures.
+
+ -- Function: int gsl_vector_fread (FILE * STREAM, gsl_vector * V)
+     This function reads into the vector V from the open stream STREAM
+     in binary format.  The vector V must be preallocated with the
+     correct length since the function uses the size of V to determine
+     how many bytes to read.  The return value is 0 for success and
+     `GSL_EFAILED' if there was a problem reading from the file.  The
+     data is assumed to have been written in the native binary format
+     on the same architecture.
+
+ -- Function: int gsl_vector_fprintf (FILE * STREAM, const gsl_vector *
+          V, const char * FORMAT)
+     This function writes the elements of the vector V line-by-line to
+     the stream STREAM using the format specifier FORMAT, which should
+     be one of the `%g', `%e' or `%f' formats for floating point
+     numbers and `%d' for integers.  The function returns 0 for success
+     and `GSL_EFAILED' if there was a problem writing to the file.
+
+ -- Function: int gsl_vector_fscanf (FILE * STREAM, gsl_vector * V)
+     This function reads formatted data from the stream STREAM into the
+     vector V.  The vector V must be preallocated with the correct
+     length since the function uses the size of V to determine how many
+     numbers to read.  The function returns 0 for success and
+     `GSL_EFAILED' if there was a problem reading from the file.
+
+\1f
+File: gsl-ref.info,  Node: Vector views,  Next: Copying vectors,  Prev: Reading and writing vectors,  Up: Vectors
+
+8.3.5 Vector views
+------------------
+
+In addition to creating vectors from slices of blocks it is also
+possible to slice vectors and create vector views.  For example, a
+subvector of another vector can be described with a view, or two views
+can be made which provide access to the even and odd elements of a
+vector.
+
+   A vector view is a temporary object, stored on the stack, which can
+be used to operate on a subset of vector elements.  Vector views can be
+defined for both constant and non-constant vectors, using separate types
+that preserve constness.  A vector view has the type `gsl_vector_view'
+and a constant vector view has the type `gsl_vector_const_view'.  In
+both cases the elements of the view can be accessed as a `gsl_vector'
+using the `vector' component of the view object.  A pointer to a vector
+of type `gsl_vector *' or `const gsl_vector *' can be obtained by
+taking the address of this component with the `&' operator.
+
+   When using this pointer it is important to ensure that the view
+itself remains in scope--the simplest way to do so is by always writing
+the pointer as `&'VIEW`.vector', and never storing this value in
+another variable.
+
+ -- Function: gsl_vector_view gsl_vector_subvector (gsl_vector * V,
+          size_t OFFSET, size_t N)
+ -- Function: gsl_vector_const_view gsl_vector_const_subvector (const
+          gsl_vector * V, size_t OFFSET, size_t N)
+     These functions return a vector view of a subvector of another
+     vector V.  The start of the new vector is offset by OFFSET elements
+     from the start of the original vector.  The new vector has N
+     elements.  Mathematically, the I-th element of the new vector V'
+     is given by,
+
+          v'(i) = v->data[(offset + i)*v->stride]
+
+     where the index I runs from 0 to `n-1'.
+
+     The `data' pointer of the returned vector struct is set to null if
+     the combined parameters (OFFSET,N) overrun the end of the original
+     vector.
+
+     The new vector is only a view of the block underlying the original
+     vector, V.  The block containing the elements of V is not owned by
+     the new vector.  When the view goes out of scope the original
+     vector V and its block will continue to exist.  The original
+     memory can only be deallocated by freeing the original vector.  Of
+     course, the original vector should not be deallocated while the
+     view is still in use.
+
+     The function `gsl_vector_const_subvector' is equivalent to
+     `gsl_vector_subvector' but can be used for vectors which are
+     declared `const'.
+
+ -- Function: gsl_vector_view gsl_vector_subvector_with_stride
+          (gsl_vector * V, size_t OFFSET, size_t STRIDE, size_t N)
+ -- Function: gsl_vector_const_view
+gsl_vector_const_subvector_with_stride (const gsl_vector * V, size_t
+          OFFSET, size_t STRIDE, size_t N)
+     These functions return a vector view of a subvector of another
+     vector V with an additional stride argument. The subvector is
+     formed in the same way as for `gsl_vector_subvector' but the new
+     vector has N elements with a step-size of STRIDE from one element
+     to the next in the original vector.  Mathematically, the I-th
+     element of the new vector V' is given by,
+
+          v'(i) = v->data[(offset + i*stride)*v->stride]
+
+     where the index I runs from 0 to `n-1'.
+
+     Note that subvector views give direct access to the underlying
+     elements of the original vector. For example, the following code
+     will zero the even elements of the vector `v' of length `n', while
+     leaving the odd elements untouched,
+
+          gsl_vector_view v_even
+            = gsl_vector_subvector_with_stride (v, 0, 2, n/2);
+          gsl_vector_set_zero (&v_even.vector);
+
+     A vector view can be passed to any subroutine which takes a vector
+     argument just as a directly allocated vector would be, using
+     `&'VIEW`.vector'.  For example, the following code computes the
+     norm of the odd elements of `v' using the BLAS routine DNRM2,
+
+          gsl_vector_view v_odd
+            = gsl_vector_subvector_with_stride (v, 1, 2, n/2);
+          double r = gsl_blas_dnrm2 (&v_odd.vector);
+
+     The function `gsl_vector_const_subvector_with_stride' is equivalent
+     to `gsl_vector_subvector_with_stride' but can be used for vectors
+     which are declared `const'.
+
+ -- Function: gsl_vector_view gsl_vector_complex_real
+          (gsl_vector_complex * V)
+ -- Function: gsl_vector_const_view gsl_vector_complex_const_real
+          (const gsl_vector_complex * V)
+     These functions return a vector view of the real parts of the
+     complex vector V.
+
+     The function `gsl_vector_complex_const_real' is equivalent to
+     `gsl_vector_complex_real' but can be used for vectors which are
+     declared `const'.
+
+ -- Function: gsl_vector_view gsl_vector_complex_imag
+          (gsl_vector_complex * V)
+ -- Function: gsl_vector_const_view gsl_vector_complex_const_imag
+          (const gsl_vector_complex * V)
+     These functions return a vector view of the imaginary parts of the
+     complex vector V.
+
+     The function `gsl_vector_complex_const_imag' is equivalent to
+     `gsl_vector_complex_imag' but can be used for vectors which are
+     declared `const'.
+
+ -- Function: gsl_vector_view gsl_vector_view_array (double * BASE,
+          size_t N)
+ -- Function: gsl_vector_const_view gsl_vector_const_view_array (const
+          double * BASE, size_t N)
+     These functions return a vector view of an array.  The start of
+     the new vector is given by BASE and has N elements.
+     Mathematically, the I-th element of the new vector V' is given by,
+
+          v'(i) = base[i]
+
+     where the index I runs from 0 to `n-1'.
+
+     The array containing the elements of V is not owned by the new
+     vector view.  When the view goes out of scope the original array
+     will continue to exist.  The original memory can only be
+     deallocated by freeing the original pointer BASE.  Of course, the
+     original array should not be deallocated while the view is still
+     in use.
+
+     The function `gsl_vector_const_view_array' is equivalent to
+     `gsl_vector_view_array' but can be used for arrays which are
+     declared `const'.
+
+ -- Function: gsl_vector_view gsl_vector_view_array_with_stride (double
+          * BASE, size_t STRIDE, size_t N)
+ -- Function: gsl_vector_const_view
+gsl_vector_const_view_array_with_stride (const double * BASE, size_t
+          STRIDE, size_t N)
+     These functions return a vector view of an array BASE with an
+     additional stride argument. The subvector is formed in the same
+     way as for `gsl_vector_view_array' but the new vector has N
+     elements with a step-size of STRIDE from one element to the next
+     in the original array.  Mathematically, the I-th element of the new
+     vector V' is given by,
+
+          v'(i) = base[i*stride]
+
+     where the index I runs from 0 to `n-1'.
+
+     Note that the view gives direct access to the underlying elements
+     of the original array.  A vector view can be passed to any
+     subroutine which takes a vector argument just as a directly
+     allocated vector would be, using `&'VIEW`.vector'.
+
+     The function `gsl_vector_const_view_array_with_stride' is
+     equivalent to `gsl_vector_view_array_with_stride' but can be used
+     for arrays which are declared `const'.
+
+\1f
+File: gsl-ref.info,  Node: Copying vectors,  Next: Exchanging elements,  Prev: Vector views,  Up: Vectors
+
+8.3.6 Copying vectors
+---------------------
+
+Common operations on vectors such as addition and multiplication are
+available in the BLAS part of the library (*note BLAS Support::).
+However, it is useful to have a small number of utility functions which
+do not require the full BLAS code.  The following functions fall into
+this category.
+
+ -- Function: int gsl_vector_memcpy (gsl_vector * DEST, const
+          gsl_vector * SRC)
+     This function copies the elements of the vector SRC into the
+     vector DEST.  The two vectors must have the same length.
+
+ -- Function: int gsl_vector_swap (gsl_vector * V, gsl_vector * W)
+     This function exchanges the elements of the vectors V and W by
+     copying.  The two vectors must have the same length.
+
+\1f
+File: gsl-ref.info,  Node: Exchanging elements,  Next: Vector operations,  Prev: Copying vectors,  Up: Vectors
+
+8.3.7 Exchanging elements
+-------------------------
+
+The following function can be used to exchange, or permute, the elements
+of a vector.
+
+ -- Function: int gsl_vector_swap_elements (gsl_vector * V, size_t I,
+          size_t J)
+     This function exchanges the I-th and J-th elements of the vector V
+     in-place.
+
+ -- Function: int gsl_vector_reverse (gsl_vector * V)
+     This function reverses the order of the elements of the vector V.
+
+\1f
+File: gsl-ref.info,  Node: Vector operations,  Next: Finding maximum and minimum elements of vectors,  Prev: Exchanging elements,  Up: Vectors
+
+8.3.8 Vector operations
+-----------------------
+
+ -- Function: int gsl_vector_add (gsl_vector * A, const gsl_vector * B)
+     This function adds the elements of vector B to the elements of
+     vector A.  The result a_i \leftarrow a_i + b_i is stored in A and
+     B remains unchanged.  The two vectors must have the same length.
+
+ -- Function: int gsl_vector_sub (gsl_vector * A, const gsl_vector * B)
+     This function subtracts the elements of vector B from the elements
+     of vector A.  The result a_i \leftarrow a_i - b_i is stored in A
+     and B remains unchanged.  The two vectors must have the same
+     length.
+
+ -- Function: int gsl_vector_mul (gsl_vector * A, const gsl_vector * B)
+     This function multiplies the elements of vector A by the elements
+     of vector B.  The result a_i \leftarrow a_i * b_i is stored in A
+     and B remains unchanged. The two vectors must have the same length.
+
+ -- Function: int gsl_vector_div (gsl_vector * A, const gsl_vector * B)
+     This function divides the elements of vector A by the elements of
+     vector B.  The result a_i \leftarrow a_i / b_i is stored in A and
+     B remains unchanged. The two vectors must have the same length.
+
+ -- Function: int gsl_vector_scale (gsl_vector * A, const double X)
+     This function multiplies the elements of vector A by the constant
+     factor X.  The result a_i \leftarrow x a_i is stored in A.
+
+ -- Function: int gsl_vector_add_constant (gsl_vector * A, const double
+          X)
+     This function adds the constant value X to the elements of the
+     vector A.  The result a_i \leftarrow a_i + x is stored in A.
+
+\1f
+File: gsl-ref.info,  Node: Finding maximum and minimum elements of vectors,  Next: Vector properties,  Prev: Vector operations,  Up: Vectors
+
+8.3.9 Finding maximum and minimum elements of vectors
+-----------------------------------------------------
+
+The following operations are only defined for real vectors.
+
+ -- Function: double gsl_vector_max (const gsl_vector * V)
+     This function returns the maximum value in the vector V.
+
+ -- Function: double gsl_vector_min (const gsl_vector * V)
+     This function returns the minimum value in the vector V.
+
+ -- Function: void gsl_vector_minmax (const gsl_vector * V, double *
+          MIN_OUT, double * MAX_OUT)
+     This function returns the minimum and maximum values in the vector
+     V, storing them in MIN_OUT and MAX_OUT.
+
+ -- Function: size_t gsl_vector_max_index (const gsl_vector * V)
+     This function returns the index of the maximum value in the vector
+     V.  When there are several equal maximum elements then the lowest
+     index is returned.
+
+ -- Function: size_t gsl_vector_min_index (const gsl_vector * V)
+     This function returns the index of the minimum value in the vector
+     V.  When there are several equal minimum elements then the lowest
+     index is returned.
+
+ -- Function: void gsl_vector_minmax_index (const gsl_vector * V,
+          size_t * IMIN, size_t * IMAX)
+     This function returns the indices of the minimum and maximum
+     values in the vector V, storing them in IMIN and IMAX. When there
+     are several equal minimum or maximum elements then the lowest
+     indices are returned.
+
+\1f
+File: gsl-ref.info,  Node: Vector properties,  Next: Example programs for vectors,  Prev: Finding maximum and minimum elements of vectors,  Up: Vectors
+
+8.3.10 Vector properties
+------------------------
+
+The following functions are defined for real and complex vectors.  For
+complex vectors both the real and imaginary parts must satisfy the
+conditions.
+
+ -- Function: int gsl_vector_isnull (const gsl_vector * V)
+ -- Function: int gsl_vector_ispos (const gsl_vector * V)
+ -- Function: int gsl_vector_isneg (const gsl_vector * V)
+ -- Function: int gsl_vector_isnonneg (const gsl_vector * V)
+     These functions return 1 if all the elements of the vector V are
+     zero, strictly positive, strictly negative, or non-negative
+     respectively, and 0 otherwise.
+
+ -- Function: int gsl_vector_equal (const gsl_vector * U, const
+          gsl_vector * V)
+     This function returns 1 if the vectors U and V are equal (by
+     comparison of element values) and 0 otherwise.
+
+\1f
+File: gsl-ref.info,  Node: Example programs for vectors,  Prev: Vector properties,  Up: Vectors
+
+8.3.11 Example programs for vectors
+-----------------------------------
+
+This program shows how to allocate, initialize and read from a vector
+using the functions `gsl_vector_alloc', `gsl_vector_set' and
+`gsl_vector_get'.
+
+     #include <stdio.h>
+     #include <gsl/gsl_vector.h>
+
+     int
+     main (void)
+     {
+       int i;
+       gsl_vector * v = gsl_vector_alloc (3);
+
+       for (i = 0; i < 3; i++)
+         {
+           gsl_vector_set (v, i, 1.23 + i);
+         }
+
+       for (i = 0; i < 100; i++) /* OUT OF RANGE ERROR */
+         {
+           printf ("v_%d = %g\n", i, gsl_vector_get (v, i));
+         }
+
+       gsl_vector_free (v);
+       return 0;
+     }
+
+Here is the output from the program.  The final loop attempts to read
+outside the range of the vector `v', and the error is trapped by the
+range-checking code in `gsl_vector_get'.
+
+     $ ./a.out
+     v_0 = 1.23
+     v_1 = 2.23
+     v_2 = 3.23
+     gsl: vector_source.c:12: ERROR: index out of range
+     Default GSL error handler invoked.
+     Aborted (core dumped)
+
+The next program shows how to write a vector to a file.
+
+     #include <stdio.h>
+     #include <gsl/gsl_vector.h>
+
+     int
+     main (void)
+     {
+       int i;
+       gsl_vector * v = gsl_vector_alloc (100);
+
+       for (i = 0; i < 100; i++)
+         {
+           gsl_vector_set (v, i, 1.23 + i);
+         }
+
+       {
+          FILE * f = fopen ("test.dat", "w");
+          gsl_vector_fprintf (f, v, "%.5g");
+          fclose (f);
+       }
+
+       gsl_vector_free (v);
+       return 0;
+     }
+
+After running this program the file `test.dat' should contain the
+elements of `v', written using the format specifier `%.5g'.  The vector
+could then be read back in using the function `gsl_vector_fscanf (f,
+v)' as follows:
+
+     #include <stdio.h>
+     #include <gsl/gsl_vector.h>
+
+     int
+     main (void)
+     {
+       int i;
+       gsl_vector * v = gsl_vector_alloc (10);
+
+       {
+          FILE * f = fopen ("test.dat", "r");
+          gsl_vector_fscanf (f, v);
+          fclose (f);
+       }
+
+       for (i = 0; i < 10; i++)
+         {
+           printf ("%g\n", gsl_vector_get(v, i));
+         }
+
+       gsl_vector_free (v);
+       return 0;
+     }
+
+\1f
+File: gsl-ref.info,  Node: Matrices,  Next: Vector and Matrix References and Further Reading,  Prev: Vectors,  Up: Vectors and Matrices
+
+8.4 Matrices
+============
+
+Matrices are defined by a `gsl_matrix' structure which describes a
+generalized slice of a block.  Like a vector it represents a set of
+elements in an area of memory, but uses two indices instead of one.
+
+   The `gsl_matrix' structure contains six components, the two
+dimensions of the matrix, a physical dimension, a pointer to the memory
+where the elements of the matrix are stored, DATA, a pointer to the
+block owned by the matrix BLOCK, if any, and an ownership flag, OWNER.
+The physical dimension determines the memory layout and can differ from
+the matrix dimension to allow the use of submatrices.  The `gsl_matrix'
+structure is very simple and looks like this,
+
+     typedef struct
+     {
+       size_t size1;
+       size_t size2;
+       size_t tda;
+       double * data;
+       gsl_block * block;
+       int owner;
+     } gsl_matrix;
+
+Matrices are stored in row-major order, meaning that each row of
+elements forms a contiguous block in memory.  This is the standard
+"C-language ordering" of two-dimensional arrays. Note that FORTRAN
+stores arrays in column-major order. The number of rows is SIZE1.  The
+range of valid row indices runs from 0 to `size1-1'.  Similarly SIZE2
+is the number of columns.  The range of valid column indices runs from
+0 to `size2-1'.  The physical row dimension TDA, or "trailing
+dimension", specifies the size of a row of the matrix as laid out in
+memory.
+
+   For example, in the following matrix SIZE1 is 3, SIZE2 is 4, and TDA
+is 8.  The physical memory layout of the matrix begins in the top left
+hand-corner and proceeds from left to right along each row in turn.
+
+     00 01 02 03 XX XX XX XX
+     10 11 12 13 XX XX XX XX
+     20 21 22 23 XX XX XX XX
+
+Each unused memory location is represented by "`XX'".  The pointer DATA
+gives the location of the first element of the matrix in memory.  The
+pointer BLOCK stores the location of the memory block in which the
+elements of the matrix are located (if any).  If the matrix owns this
+block then the OWNER field is set to one and the block will be
+deallocated when the matrix is freed.  If the matrix is only a slice of
+a block owned by another object then the OWNER field is zero and any
+underlying block will not be freed.
+
+   The functions for allocating and accessing matrices are defined in
+`gsl_matrix.h'
+
+* Menu:
+
+* Matrix allocation::
+* Accessing matrix elements::
+* Initializing matrix elements::
+* Reading and writing matrices::
+* Matrix views::
+* Creating row and column views::
+* Copying matrices::
+* Copying rows and columns::
+* Exchanging rows and columns::
+* Matrix operations::
+* Finding maximum and minimum elements of matrices::
+* Matrix properties::
+* Example programs for matrices::
+
+\1f
+File: gsl-ref.info,  Node: Matrix allocation,  Next: Accessing matrix elements,  Up: Matrices
+
+8.4.1 Matrix allocation
+-----------------------
+
+The functions for allocating memory to a matrix follow the style of
+`malloc' and `free'.  They also perform their own error checking.  If
+there is insufficient memory available to allocate a matrix then the
+functions call the GSL error handler (with an error number of
+`GSL_ENOMEM') in addition to returning a null pointer.  Thus if you use
+the library error handler to abort your program then it isn't necessary
+to check every `alloc'.
+
+ -- Function: gsl_matrix * gsl_matrix_alloc (size_t N1, size_t N2)
+     This function creates a matrix of size N1 rows by N2 columns,
+     returning a pointer to a newly initialized matrix struct. A new
+     block is allocated for the elements of the matrix, and stored in
+     the BLOCK component of the matrix struct.  The block is "owned" by
+     the matrix, and will be deallocated when the matrix is deallocated.
+
+ -- Function: gsl_matrix * gsl_matrix_calloc (size_t N1, size_t N2)
+     This function allocates memory for a matrix of size N1 rows by N2
+     columns and initializes all the elements of the matrix to zero.
+
+ -- Function: void gsl_matrix_free (gsl_matrix * M)
+     This function frees a previously allocated matrix M.  If the
+     matrix was created using `gsl_matrix_alloc' then the block
+     underlying the matrix will also be deallocated.  If the matrix has
+     been created from another object then the memory is still owned by
+     that object and will not be deallocated.  The matrix M must be a
+     valid matrix object (a null pointer is not allowed).
+
+\1f
+File: gsl-ref.info,  Node: Accessing matrix elements,  Next: Initializing matrix elements,  Prev: Matrix allocation,  Up: Matrices
+
+8.4.2 Accessing matrix elements
+-------------------------------
+
+The functions for accessing the elements of a matrix use the same range
+checking system as vectors.  You can turn off range checking by
+recompiling your program with the preprocessor definition
+`GSL_RANGE_CHECK_OFF'.
+
+   The elements of the matrix are stored in "C-order", where the second
+index moves continuously through memory.  More precisely, the element
+accessed by the function `gsl_matrix_get(m,i,j)' and
+`gsl_matrix_set(m,i,j,x)' is
+
+     m->data[i * m->tda + j]
+
+where TDA is the physical row-length of the matrix.
+
+ -- Function: double gsl_matrix_get (const gsl_matrix * M, size_t I,
+          size_t J)
+     This function returns the (i,j)-th element of a matrix M.  If I or
+     J lie outside the allowed range of 0 to N1-1 and 0 to N2-1 then
+     the error handler is invoked and 0 is returned.  An inline version
+     of this function is used when `HAVE_INLINE' is defined.
+
+ -- Function: void gsl_matrix_set (gsl_matrix * M, size_t I, size_t J,
+          double X)
+     This function sets the value of the (i,j)-th element of a matrix M
+     to X.  If I or J lies outside the allowed range of 0 to N1-1 and 0
+     to N2-1 then the error handler is invoked.  An inline version of
+     this function is used when `HAVE_INLINE' is defined.
+
+ -- Function: double * gsl_matrix_ptr (gsl_matrix * M, size_t I, size_t
+          J)
+ -- Function: const double * gsl_matrix_const_ptr (const gsl_matrix *
+          M, size_t I, size_t J)
+     These functions return a pointer to the (i,j)-th element of a
+     matrix M.  If I or J lie outside the allowed range of 0 to N1-1
+     and 0 to N2-1 then the error handler is invoked and a null pointer
+     is returned.  Inline versions of these functions are used when
+     `HAVE_INLINE' is defined.
+
+\1f
+File: gsl-ref.info,  Node: Initializing matrix elements,  Next: Reading and writing matrices,  Prev: Accessing matrix elements,  Up: Matrices
+
+8.4.3 Initializing matrix elements
+----------------------------------
+
+ -- Function: void gsl_matrix_set_all (gsl_matrix * M, double X)
+     This function sets all the elements of the matrix M to the value X.
+
+ -- Function: void gsl_matrix_set_zero (gsl_matrix * M)
+     This function sets all the elements of the matrix M to zero.
+
+ -- Function: void gsl_matrix_set_identity (gsl_matrix * M)
+     This function sets the elements of the matrix M to the
+     corresponding elements of the identity matrix, m(i,j) =
+     \delta(i,j), i.e. a unit diagonal with all off-diagonal elements
+     zero.  This applies to both square and rectangular matrices.
+
+\1f
+File: gsl-ref.info,  Node: Reading and writing matrices,  Next: Matrix views,  Prev: Initializing matrix elements,  Up: Matrices
+
+8.4.4 Reading and writing matrices
+----------------------------------
+
+The library provides functions for reading and writing matrices to a
+file as binary data or formatted text.
+
+ -- Function: int gsl_matrix_fwrite (FILE * STREAM, const gsl_matrix *
+          M)
+     This function writes the elements of the matrix M to the stream
+     STREAM in binary format.  The return value is 0 for success and
+     `GSL_EFAILED' if there was a problem writing to the file.  Since
+     the data is written in the native binary format it may not be
+     portable between different architectures.
+
+ -- Function: int gsl_matrix_fread (FILE * STREAM, gsl_matrix * M)
+     This function reads into the matrix M from the open stream STREAM
+     in binary format.  The matrix M must be preallocated with the
+     correct dimensions since the function uses the size of M to
+     determine how many bytes to read.  The return value is 0 for
+     success and `GSL_EFAILED' if there was a problem reading from the
+     file.  The data is assumed to have been written in the native
+     binary format on the same architecture.
+
+ -- Function: int gsl_matrix_fprintf (FILE * STREAM, const gsl_matrix *
+          M, const char * FORMAT)
+     This function writes the elements of the matrix M line-by-line to
+     the stream STREAM using the format specifier FORMAT, which should
+     be one of the `%g', `%e' or `%f' formats for floating point
+     numbers and `%d' for integers.  The function returns 0 for success
+     and `GSL_EFAILED' if there was a problem writing to the file.
+
+ -- Function: int gsl_matrix_fscanf (FILE * STREAM, gsl_matrix * M)
+     This function reads formatted data from the stream STREAM into the
+     matrix M.  The matrix M must be preallocated with the correct
+     dimensions since the function uses the size of M to determine how
+     many numbers to read.  The function returns 0 for success and
+     `GSL_EFAILED' if there was a problem reading from the file.
+
+\1f
+File: gsl-ref.info,  Node: Matrix views,  Next: Creating row and column views,  Prev: Reading and writing matrices,  Up: Matrices
+
+8.4.5 Matrix views
+------------------
+
+A matrix view is a temporary object, stored on the stack, which can be
+used to operate on a subset of matrix elements.  Matrix views can be
+defined for both constant and non-constant matrices using separate types
+that preserve constness.  A matrix view has the type `gsl_matrix_view'
+and a constant matrix view has the type `gsl_matrix_const_view'.  In
+both cases the elements of the view can by accessed using the `matrix'
+component of the view object.  A pointer `gsl_matrix *' or `const
+gsl_matrix *' can be obtained by taking the address of the `matrix'
+component with the `&' operator.  In addition to matrix views it is
+also possible to create vector views of a matrix, such as row or column
+views.
+
+ -- Function: gsl_matrix_view gsl_matrix_submatrix (gsl_matrix * M,
+          size_t K1, size_t K2, size_t N1, size_t N2)
+ -- Function: gsl_matrix_const_view gsl_matrix_const_submatrix (const
+          gsl_matrix * M, size_t K1, size_t K2, size_t N1, size_t N2)
+     These functions return a matrix view of a submatrix of the matrix
+     M.  The upper-left element of the submatrix is the element (K1,K2)
+     of the original matrix.  The submatrix has N1 rows and N2 columns.
+     The physical number of columns in memory given by TDA is
+     unchanged.  Mathematically, the (i,j)-th element of the new matrix
+     is given by,
+
+          m'(i,j) = m->data[(k1*m->tda + k2) + i*m->tda + j]
+
+     where the index I runs from 0 to `n1-1' and the index J runs from
+     0 to `n2-1'.
+
+     The `data' pointer of the returned matrix struct is set to null if
+     the combined parameters (I,J,N1,N2,TDA) overrun the ends of the
+     original matrix.
+
+     The new matrix view is only a view of the block underlying the
+     existing matrix, M.  The block containing the elements of M is not
+     owned by the new matrix view.  When the view goes out of scope the
+     original matrix M and its block will continue to exist.  The
+     original memory can only be deallocated by freeing the original
+     matrix.  Of course, the original matrix should not be deallocated
+     while the view is still in use.
+
+     The function `gsl_matrix_const_submatrix' is equivalent to
+     `gsl_matrix_submatrix' but can be used for matrices which are
+     declared `const'.
+
+ -- Function: gsl_matrix_view gsl_matrix_view_array (double * BASE,
+          size_t N1, size_t N2)
+ -- Function: gsl_matrix_const_view gsl_matrix_const_view_array (const
+          double * BASE, size_t N1, size_t N2)
+     These functions return a matrix view of the array BASE.  The
+     matrix has N1 rows and N2 columns.  The physical number of columns
+     in memory is also given by N2.  Mathematically, the (i,j)-th
+     element of the new matrix is given by,
+
+          m'(i,j) = base[i*n2 + j]
+
+     where the index I runs from 0 to `n1-1' and the index J runs from
+     0 to `n2-1'.
+
+     The new matrix is only a view of the array BASE.  When the view
+     goes out of scope the original array BASE will continue to exist.
+     The original memory can only be deallocated by freeing the original
+     array.  Of course, the original array should not be deallocated
+     while the view is still in use.
+
+     The function `gsl_matrix_const_view_array' is equivalent to
+     `gsl_matrix_view_array' but can be used for matrices which are
+     declared `const'.
+
+ -- Function: gsl_matrix_view gsl_matrix_view_array_with_tda (double *
+          BASE, size_t N1, size_t N2, size_t TDA)
+ -- Function: gsl_matrix_const_view
+          gsl_matrix_const_view_array_with_tda (const double * BASE,
+          size_t N1, size_t N2, size_t TDA)
+     These functions return a matrix view of the array BASE with a
+     physical number of columns TDA which may differ from the
+     corresponding dimension of the matrix.  The matrix has N1 rows and
+     N2 columns, and the physical number of columns in memory is given
+     by TDA.  Mathematically, the (i,j)-th element of the new matrix is
+     given by,
+
+          m'(i,j) = base[i*tda + j]
+
+     where the index I runs from 0 to `n1-1' and the index J runs from
+     0 to `n2-1'.
+
+     The new matrix is only a view of the array BASE.  When the view
+     goes out of scope the original array BASE will continue to exist.
+     The original memory can only be deallocated by freeing the original
+     array.  Of course, the original array should not be deallocated
+     while the view is still in use.
+
+     The function `gsl_matrix_const_view_array_with_tda' is equivalent
+     to `gsl_matrix_view_array_with_tda' but can be used for matrices
+     which are declared `const'.
+
+ -- Function: gsl_matrix_view gsl_matrix_view_vector (gsl_vector * V,
+          size_t N1, size_t N2)
+ -- Function: gsl_matrix_const_view gsl_matrix_const_view_vector (const
+          gsl_vector * V, size_t N1, size_t N2)
+     These functions return a matrix view of the vector V.  The matrix
+     has N1 rows and N2 columns. The vector must have unit stride. The
+     physical number of columns in memory is also given by N2.
+     Mathematically, the (i,j)-th element of the new matrix is given by,
+
+          m'(i,j) = v->data[i*n2 + j]
+
+     where the index I runs from 0 to `n1-1' and the index J runs from
+     0 to `n2-1'.
+
+     The new matrix is only a view of the vector V.  When the view goes
+     out of scope the original vector V will continue to exist.  The
+     original memory can only be deallocated by freeing the original
+     vector.  Of course, the original vector should not be deallocated
+     while the view is still in use.
+
+     The function `gsl_matrix_const_view_vector' is equivalent to
+     `gsl_matrix_view_vector' but can be used for matrices which are
+     declared `const'.
+
+ -- Function: gsl_matrix_view gsl_matrix_view_vector_with_tda
+          (gsl_vector * V, size_t N1, size_t N2, size_t TDA)
+ -- Function: gsl_matrix_const_view
+gsl_matrix_const_view_vector_with_tda (const gsl_vector * V, size_t N1,
+          size_t N2, size_t TDA)
+     These functions return a matrix view of the vector V with a
+     physical number of columns TDA which may differ from the
+     corresponding matrix dimension.  The vector must have unit stride.
+     The matrix has N1 rows and N2 columns, and the physical number of
+     columns in memory is given by TDA.  Mathematically, the (i,j)-th
+     element of the new matrix is given by,
+
+          m'(i,j) = v->data[i*tda + j]
+
+     where the index I runs from 0 to `n1-1' and the index J runs from
+     0 to `n2-1'.
+
+     The new matrix is only a view of the vector V.  When the view goes
+     out of scope the original vector V will continue to exist.  The
+     original memory can only be deallocated by freeing the original
+     vector.  Of course, the original vector should not be deallocated
+     while the view is still in use.
+
+     The function `gsl_matrix_const_view_vector_with_tda' is equivalent
+     to `gsl_matrix_view_vector_with_tda' but can be used for matrices
+     which are declared `const'.
+
+\1f
+File: gsl-ref.info,  Node: Creating row and column views,  Next: Copying matrices,  Prev: Matrix views,  Up: Matrices
+
+8.4.6 Creating row and column views
+-----------------------------------
+
+In general there are two ways to access an object, by reference or by
+copying.  The functions described in this section create vector views
+which allow access to a row or column of a matrix by reference.
+Modifying elements of the view is equivalent to modifying the matrix,
+since both the vector view and the matrix point to the same memory
+block.
+
+ -- Function: gsl_vector_view gsl_matrix_row (gsl_matrix * M, size_t I)
+ -- Function: gsl_vector_const_view gsl_matrix_const_row (const
+          gsl_matrix * M, size_t I)
+     These functions return a vector view of the I-th row of the matrix
+     M.  The `data' pointer of the new vector is set to null if I is
+     out of range.
+
+     The function `gsl_vector_const_row' is equivalent to
+     `gsl_matrix_row' but can be used for matrices which are declared
+     `const'.
+
+ -- Function: gsl_vector_view gsl_matrix_column (gsl_matrix * M, size_t
+          J)
+ -- Function: gsl_vector_const_view gsl_matrix_const_column (const
+          gsl_matrix * M, size_t J)
+     These functions return a vector view of the J-th column of the
+     matrix M.  The `data' pointer of the new vector is set to null if
+     J is out of range.
+
+     The function `gsl_vector_const_column' is equivalent to
+     `gsl_matrix_column' but can be used for matrices which are declared
+     `const'.
+
+ -- Function: gsl_vector_view gsl_matrix_subrow (gsl_matrix * M, size_t
+          I, size_t OFFSET, size_t N)
+ -- Function: gsl_vector_const_view gsl_matrix_const_subrow (const
+          gsl_matrix * M, size_t I, size_t OFFSET, size_t N)
+     These functions return a vector view of the I-th row of the matrix
+     M beginning at OFFSET elements past the first column and
+     containing N elements. The `data' pointer of the new vector is set
+     to null if I, OFFSET, or N are out of range.
+
+     The function `gsl_vector_const_subrow' is equivalent to
+     `gsl_matrix_subrow' but can be used for matrices which are declared
+     `const'.
+
+ -- Function: gsl_vector_view gsl_matrix_subcolumn (gsl_matrix * M,
+          size_t J, size_t OFFSET, size_t N)
+ -- Function: gsl_vector_const_view gsl_matrix_const_subcolumn (const
+          gsl_matrix * M, size_t J, size_t OFFSET, size_t N)
+     These functions return a vector view of the J-th column of the
+     matrix M beginning at OFFSET elements past the first row and
+     containing N elements. The `data' pointer of the new vector is set
+     to null if J, OFFSET, or N are out of range.
+
+     The function `gsl_vector_const_subcolumn' is equivalent to
+     `gsl_matrix_subcolumn' but can be used for matrices which are
+     declared `const'.
+
+ -- Function: gsl_vector_view gsl_matrix_diagonal (gsl_matrix * M)
+ -- Function: gsl_vector_const_view gsl_matrix_const_diagonal (const
+          gsl_matrix * M)
+     These functions return a vector view of the diagonal of the matrix
+     M. The matrix M is not required to be square. For a rectangular
+     matrix the length of the diagonal is the same as the smaller
+     dimension of the matrix.
+
+     The function `gsl_matrix_const_diagonal' is equivalent to
+     `gsl_matrix_diagonal' but can be used for matrices which are
+     declared `const'.
+
+ -- Function: gsl_vector_view gsl_matrix_subdiagonal (gsl_matrix * M,
+          size_t K)
+ -- Function: gsl_vector_const_view gsl_matrix_const_subdiagonal (const
+          gsl_matrix * M, size_t K)
+     These functions return a vector view of the K-th subdiagonal of
+     the matrix M. The matrix M is not required to be square.  The
+     diagonal of the matrix corresponds to k = 0.
+
+     The function `gsl_matrix_const_subdiagonal' is equivalent to
+     `gsl_matrix_subdiagonal' but can be used for matrices which are
+     declared `const'.
+
+ -- Function: gsl_vector_view gsl_matrix_superdiagonal (gsl_matrix * M,
+          size_t K)
+ -- Function: gsl_vector_const_view gsl_matrix_const_superdiagonal
+          (const gsl_matrix * M, size_t K)
+     These functions return a vector view of the K-th superdiagonal of
+     the matrix M. The matrix M is not required to be square. The
+     diagonal of the matrix corresponds to k = 0.
+
+     The function `gsl_matrix_const_superdiagonal' is equivalent to
+     `gsl_matrix_superdiagonal' but can be used for matrices which are
+     declared `const'.
+
+\1f
+File: gsl-ref.info,  Node: Copying matrices,  Next: Copying rows and columns,  Prev: Creating row and column views,  Up: Matrices
+
+8.4.7 Copying matrices
+----------------------
+
+ -- Function: int gsl_matrix_memcpy (gsl_matrix * DEST, const
+          gsl_matrix * SRC)
+     This function copies the elements of the matrix SRC into the
+     matrix DEST.  The two matrices must have the same size.
+
+ -- Function: int gsl_matrix_swap (gsl_matrix * M1, gsl_matrix * M2)
+     This function exchanges the elements of the matrices M1 and M2 by
+     copying.  The two matrices must have the same size.
+
+\1f
+File: gsl-ref.info,  Node: Copying rows and columns,  Next: Exchanging rows and columns,  Prev: Copying matrices,  Up: Matrices
+
+8.4.8 Copying rows and columns
+------------------------------
+
+The functions described in this section copy a row or column of a matrix
+into a vector.  This allows the elements of the vector and the matrix to
+be modified independently.  Note that if the matrix and the vector point
+to overlapping regions of memory then the result will be undefined.  The
+same effect can be achieved with more generality using
+`gsl_vector_memcpy' with vector views of rows and columns.
+
+ -- Function: int gsl_matrix_get_row (gsl_vector * V, const gsl_matrix
+          * M, size_t I)
+     This function copies the elements of the I-th row of the matrix M
+     into the vector V.  The length of the vector must be the same as
+     the length of the row.
+
+ -- Function: int gsl_matrix_get_col (gsl_vector * V, const gsl_matrix
+          * M, size_t J)
+     This function copies the elements of the J-th column of the matrix
+     M into the vector V.  The length of the vector must be the same as
+     the length of the column.
+
+ -- Function: int gsl_matrix_set_row (gsl_matrix * M, size_t I, const
+          gsl_vector * V)
+     This function copies the elements of the vector V into the I-th
+     row of the matrix M.  The length of the vector must be the same as
+     the length of the row.
+
+ -- Function: int gsl_matrix_set_col (gsl_matrix * M, size_t J, const
+          gsl_vector * V)
+     This function copies the elements of the vector V into the J-th
+     column of the matrix M.  The length of the vector must be the same
+     as the length of the column.
+
+\1f
+File: gsl-ref.info,  Node: Exchanging rows and columns,  Next: Matrix operations,  Prev: Copying rows and columns,  Up: Matrices
+
+8.4.9 Exchanging rows and columns
+---------------------------------
+
+The following functions can be used to exchange the rows and columns of
+a matrix.
+
+ -- Function: int gsl_matrix_swap_rows (gsl_matrix * M, size_t I,
+          size_t J)
+     This function exchanges the I-th and J-th rows of the matrix M
+     in-place.
+
+ -- Function: int gsl_matrix_swap_columns (gsl_matrix * M, size_t I,
+          size_t J)
+     This function exchanges the I-th and J-th columns of the matrix M
+     in-place.
+
+ -- Function: int gsl_matrix_swap_rowcol (gsl_matrix * M, size_t I,
+          size_t J)
+     This function exchanges the I-th row and J-th column of the matrix
+     M in-place.  The matrix must be square for this operation to be
+     possible.
+
+ -- Function: int gsl_matrix_transpose_memcpy (gsl_matrix * DEST, const
+          gsl_matrix * SRC)
+     This function makes the matrix DEST the transpose of the matrix
+     SRC by copying the elements of SRC into DEST.  This function works
+     for all matrices provided that the dimensions of the matrix DEST
+     match the transposed dimensions of the matrix SRC.
+
+ -- Function: int gsl_matrix_transpose (gsl_matrix * M)
+     This function replaces the matrix M by its transpose by copying
+     the elements of the matrix in-place.  The matrix must be square
+     for this operation to be possible.
+
+\1f
+File: gsl-ref.info,  Node: Matrix operations,  Next: Finding maximum and minimum elements of matrices,  Prev: Exchanging rows and columns,  Up: Matrices
+
+8.4.10 Matrix operations
+------------------------
+
+The following operations are defined for real and complex matrices.
+
+ -- Function: int gsl_matrix_add (gsl_matrix * A, const gsl_matrix * B)
+     This function adds the elements of matrix B to the elements of
+     matrix A.  The result a(i,j) \leftarrow a(i,j) + b(i,j) is stored
+     in A and B remains unchanged. The two matrices must have the same
+     dimensions.
+
+ -- Function: int gsl_matrix_sub (gsl_matrix * A, const gsl_matrix * B)
+     This function subtracts the elements of matrix B from the elements
+     of matrix A.  The result a(i,j) \leftarrow a(i,j) - b(i,j) is
+     stored in A and B remains unchanged. The two matrices must have
+     the same dimensions.
+
+ -- Function: int gsl_matrix_mul_elements (gsl_matrix * A, const
+          gsl_matrix * B)
+     This function multiplies the elements of matrix A by the elements
+     of matrix B.  The result a(i,j) \leftarrow a(i,j) * b(i,j) is
+     stored in A and B remains unchanged.  The two matrices must have
+     the same dimensions.
+
+ -- Function: int gsl_matrix_div_elements (gsl_matrix * A, const
+          gsl_matrix * B)
+     This function divides the elements of matrix A by the elements of
+     matrix B.  The result a(i,j) \leftarrow a(i,j) / b(i,j) is stored
+     in A and B remains unchanged. The two matrices must have the same
+     dimensions.
+
+ -- Function: int gsl_matrix_scale (gsl_matrix * A, const double X)
+     This function multiplies the elements of matrix A by the constant
+     factor X.  The result a(i,j) \leftarrow x a(i,j) is stored in A.
+
+ -- Function: int gsl_matrix_add_constant (gsl_matrix * A, const double
+          X)
+     This function adds the constant value X to the elements of the
+     matrix A.  The result a(i,j) \leftarrow a(i,j) + x is stored in A.
+
+\1f
+File: gsl-ref.info,  Node: Finding maximum and minimum elements of matrices,  Next: Matrix properties,  Prev: Matrix operations,  Up: Matrices
+
+8.4.11 Finding maximum and minimum elements of matrices
+-------------------------------------------------------
+
+The following operations are only defined for real matrices.
+
+ -- Function: double gsl_matrix_max (const gsl_matrix * M)
+     This function returns the maximum value in the matrix M.
+
+ -- Function: double gsl_matrix_min (const gsl_matrix * M)
+     This function returns the minimum value in the matrix M.
+
+ -- Function: void gsl_matrix_minmax (const gsl_matrix * M, double *
+          MIN_OUT, double * MAX_OUT)
+     This function returns the minimum and maximum values in the matrix
+     M, storing them in MIN_OUT and MAX_OUT.
+
+ -- Function: void gsl_matrix_max_index (const gsl_matrix * M, size_t *
+          IMAX, size_t * JMAX)
+     This function returns the indices of the maximum value in the
+     matrix M, storing them in IMAX and JMAX.  When there are several
+     equal maximum elements then the first element found is returned,
+     searching in row-major order.
+
+ -- Function: void gsl_matrix_min_index (const gsl_matrix * M, size_t *
+          IMIN, size_t * JMIN)
+     This function returns the indices of the minimum value in the
+     matrix M, storing them in IMIN and JMIN.  When there are several
+     equal minimum elements then the first element found is returned,
+     searching in row-major order.
+
+ -- Function: void gsl_matrix_minmax_index (const gsl_matrix * M,
+          size_t * IMIN, size_t * JMIN, size_t * IMAX, size_t * JMAX)
+     This function returns the indices of the minimum and maximum
+     values in the matrix M, storing them in (IMIN,JMIN) and
+     (IMAX,JMAX). When there are several equal minimum or maximum
+     elements then the first elements found are returned, searching in
+     row-major order.
+
+\1f
+File: gsl-ref.info,  Node: Matrix properties,  Next: Example programs for matrices,  Prev: Finding maximum and minimum elements of matrices,  Up: Matrices
+
+8.4.12 Matrix properties
+------------------------
+
+The following functions are defined for real and complex matrices.  For
+complex matrices both the real and imaginary parts must satisfy the
+conditions.
+
+ -- Function: int gsl_matrix_isnull (const gsl_matrix * M)
+ -- Function: int gsl_matrix_ispos (const gsl_matrix * M)
+ -- Function: int gsl_matrix_isneg (const gsl_matrix * M)
+ -- Function: int gsl_matrix_isnonneg (const gsl_matrix * M)
+     These functions return 1 if all the elements of the matrix M are
+     zero, strictly positive, strictly negative, or non-negative
+     respectively, and 0 otherwise. To test whether a matrix is
+     positive-definite, use the Cholesky decomposition (*note Cholesky
+     Decomposition::).
+
+ -- Function: int gsl_matrix_equal (const gsl_matrix * A, const
+          gsl_matrix * B)
+     This function returns 1 if the matrices A and B are equal (by
+     comparison of element values) and 0 otherwise.
+
+\1f
+File: gsl-ref.info,  Node: Example programs for matrices,  Prev: Matrix properties,  Up: Matrices
+
+8.4.13 Example programs for matrices
+------------------------------------
+
+The program below shows how to allocate, initialize and read from a
+matrix using the functions `gsl_matrix_alloc', `gsl_matrix_set' and
+`gsl_matrix_get'.
+
+     #include <stdio.h>
+     #include <gsl/gsl_matrix.h>
+
+     int
+     main (void)
+     {
+       int i, j;
+       gsl_matrix * m = gsl_matrix_alloc (10, 3);
+
+       for (i = 0; i < 10; i++)
+         for (j = 0; j < 3; j++)
+           gsl_matrix_set (m, i, j, 0.23 + 100*i + j);
+
+       for (i = 0; i < 100; i++)  /* OUT OF RANGE ERROR */
+         for (j = 0; j < 3; j++)
+           printf ("m(%d,%d) = %g\n", i, j,
+                   gsl_matrix_get (m, i, j));
+
+       gsl_matrix_free (m);
+
+       return 0;
+     }
+
+Here is the output from the program.  The final loop attempts to read
+outside the range of the matrix `m', and the error is trapped by the
+range-checking code in `gsl_matrix_get'.
+
+     $ ./a.out
+     m(0,0) = 0.23
+     m(0,1) = 1.23
+     m(0,2) = 2.23
+     m(1,0) = 100.23
+     m(1,1) = 101.23
+     m(1,2) = 102.23
+     ...
+     m(9,2) = 902.23
+     gsl: matrix_source.c:13: ERROR: first index out of range
+     Default GSL error handler invoked.
+     Aborted (core dumped)
+
+The next program shows how to write a matrix to a file.
+
+     #include <stdio.h>
+     #include <gsl/gsl_matrix.h>
+
+     int
+     main (void)
+     {
+       int i, j, k = 0;
+       gsl_matrix * m = gsl_matrix_alloc (100, 100);
+       gsl_matrix * a = gsl_matrix_alloc (100, 100);
+
+       for (i = 0; i < 100; i++)
+         for (j = 0; j < 100; j++)
+           gsl_matrix_set (m, i, j, 0.23 + i + j);
+
+       {
+          FILE * f = fopen ("test.dat", "wb");
+          gsl_matrix_fwrite (f, m);
+          fclose (f);
+       }
+
+       {
+          FILE * f = fopen ("test.dat", "rb");
+          gsl_matrix_fread (f, a);
+          fclose (f);
+       }
+
+       for (i = 0; i < 100; i++)
+         for (j = 0; j < 100; j++)
+           {
+             double mij = gsl_matrix_get (m, i, j);
+             double aij = gsl_matrix_get (a, i, j);
+             if (mij != aij) k++;
+           }
+
+       gsl_matrix_free (m);
+       gsl_matrix_free (a);
+
+       printf ("differences = %d (should be zero)\n", k);
+       return (k > 0);
+     }
+
+After running this program the file `test.dat' should contain the
+elements of `m', written in binary format.  The matrix which is read
+back in using the function `gsl_matrix_fread' should be exactly equal
+to the original matrix.
+
+   The following program demonstrates the use of vector views.  The
+program computes the column norms of a matrix.
+
+     #include <math.h>
+     #include <stdio.h>
+     #include <gsl/gsl_matrix.h>
+     #include <gsl/gsl_blas.h>
+
+     int
+     main (void)
+     {
+       size_t i,j;
+
+       gsl_matrix *m = gsl_matrix_alloc (10, 10);
+
+       for (i = 0; i < 10; i++)
+         for (j = 0; j < 10; j++)
+           gsl_matrix_set (m, i, j, sin (i) + cos (j));
+
+       for (j = 0; j < 10; j++)
+         {
+           gsl_vector_view column = gsl_matrix_column (m, j);
+           double d;
+
+           d = gsl_blas_dnrm2 (&column.vector);
+
+           printf ("matrix column %d, norm = %g\n", j, d);
+         }
+
+       gsl_matrix_free (m);
+
+       return 0;
+     }
+
+Here is the output of the program,
+
+     $ ./a.out
+     matrix column 0, norm = 4.31461
+     matrix column 1, norm = 3.1205
+     matrix column 2, norm = 2.19316
+     matrix column 3, norm = 3.26114
+     matrix column 4, norm = 2.53416
+     matrix column 5, norm = 2.57281
+     matrix column 6, norm = 4.20469
+     matrix column 7, norm = 3.65202
+     matrix column 8, norm = 2.08524
+     matrix column 9, norm = 3.07313
+
+The results can be confirmed using GNU OCTAVE,
+
+     $ octave
+     GNU Octave, version 2.0.16.92
+     octave> m = sin(0:9)' * ones(1,10)
+                    + ones(10,1) * cos(0:9);
+     octave> sqrt(sum(m.^2))
+     ans =
+       4.3146  3.1205  2.1932  3.2611  2.5342  2.5728
+       4.2047  3.6520  2.0852  3.0731
+
+\1f
+File: gsl-ref.info,  Node: Vector and Matrix References and Further Reading,  Prev: Matrices,  Up: Vectors and Matrices
+
+8.5 References and Further Reading
+==================================
+
+The block, vector and matrix objects in GSL follow the `valarray' model
+of C++.  A description of this model can be found in the following
+reference,
+
+     B. Stroustrup, `The C++ Programming Language' (3rd Ed), Section
+     22.4 Vector Arithmetic.  Addison-Wesley 1997, ISBN 0-201-88954-4.
+
+\1f
+File: gsl-ref.info,  Node: Permutations,  Next: Combinations,  Prev: Vectors and Matrices,  Up: Top
+
+9 Permutations
+**************
+
+This chapter describes functions for creating and manipulating
+permutations. A permutation p is represented by an array of n integers
+in the range 0 to n-1, where each value p_i occurs once and only once.
+The application of a permutation p to a vector v yields a new vector v'
+where v'_i = v_{p_i}.  For example, the array (0,1,3,2) represents a
+permutation which exchanges the last two elements of a four element
+vector.  The corresponding identity permutation is (0,1,2,3).
+
+   Note that the permutations produced by the linear algebra routines
+correspond to the exchange of matrix columns, and so should be
+considered as applying to row-vectors in the form v' = v P rather than
+column-vectors, when permuting the elements of a vector.
+
+   The functions described in this chapter are defined in the header
+file `gsl_permutation.h'.
+
+* Menu:
+
+* The Permutation struct::
+* Permutation allocation::
+* Accessing permutation elements::
+* Permutation properties::
+* Permutation functions::
+* Applying Permutations::
+* Reading and writing permutations::
+* Permutations in cyclic form::
+* Permutation Examples::
+* Permutation References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: The Permutation struct,  Next: Permutation allocation,  Up: Permutations
+
+9.1 The Permutation struct
+==========================
+
+A permutation is defined by a structure containing two components, the
+size of the permutation and a pointer to the permutation array.  The
+elements of the permutation array are all of type `size_t'.  The
+`gsl_permutation' structure looks like this,
+
+     typedef struct
+     {
+       size_t size;
+       size_t * data;
+     } gsl_permutation;
+
+
+\1f
+File: gsl-ref.info,  Node: Permutation allocation,  Next: Accessing permutation elements,  Prev: The Permutation struct,  Up: Permutations
+
+9.2 Permutation allocation
+==========================
+
+ -- Function: gsl_permutation * gsl_permutation_alloc (size_t N)
+     This function allocates memory for a new permutation of size N.
+     The permutation is not initialized and its elements are undefined.
+     Use the function `gsl_permutation_calloc' if you want to create a
+     permutation which is initialized to the identity. A null pointer is
+     returned if insufficient memory is available to create the
+     permutation.
+
+ -- Function: gsl_permutation * gsl_permutation_calloc (size_t N)
+     This function allocates memory for a new permutation of size N and
+     initializes it to the identity. A null pointer is returned if
+     insufficient memory is available to create the permutation.
+
+ -- Function: void gsl_permutation_init (gsl_permutation * P)
+     This function initializes the permutation P to the identity, i.e.
+     (0,1,2,...,n-1).
+
+ -- Function: void gsl_permutation_free (gsl_permutation * P)
+     This function frees all the memory used by the permutation P.
+
+ -- Function: int gsl_permutation_memcpy (gsl_permutation * DEST, const
+          gsl_permutation * SRC)
+     This function copies the elements of the permutation SRC into the
+     permutation DEST.  The two permutations must have the same size.
+
+\1f
+File: gsl-ref.info,  Node: Accessing permutation elements,  Next: Permutation properties,  Prev: Permutation allocation,  Up: Permutations
+
+9.3 Accessing permutation elements
+==================================
+
+The following functions can be used to access and manipulate
+permutations.
+
+ -- Function: size_t gsl_permutation_get (const gsl_permutation * P,
+          const size_t I)
+     This function returns the value of the I-th element of the
+     permutation P.  If I lies outside the allowed range of 0 to N-1
+     then the error handler is invoked and 0 is returned.  An inline
+     version of this function is used when `HAVE_INLINE' is defined.
+
+ -- Function: int gsl_permutation_swap (gsl_permutation * P, const
+          size_t I, const size_t J)
+     This function exchanges the I-th and J-th elements of the
+     permutation P.
+
+\1f
+File: gsl-ref.info,  Node: Permutation properties,  Next: Permutation functions,  Prev: Accessing permutation elements,  Up: Permutations
+
+9.4 Permutation properties
+==========================
+
+ -- Function: size_t gsl_permutation_size (const gsl_permutation * P)
+     This function returns the size of the permutation P.
+
+ -- Function: size_t * gsl_permutation_data (const gsl_permutation * P)
+     This function returns a pointer to the array of elements in the
+     permutation P.
+
+ -- Function: int gsl_permutation_valid (const gsl_permutation * P)
+     This function checks that the permutation P is valid.  The N
+     elements should contain each of the numbers 0 to N-1 once and only
+     once.
+
+\1f
+File: gsl-ref.info,  Node: Permutation functions,  Next: Applying Permutations,  Prev: Permutation properties,  Up: Permutations
+
+9.5 Permutation functions
+=========================
+
+ -- Function: void gsl_permutation_reverse (gsl_permutation * P)
+     This function reverses the elements of the permutation P.
+
+ -- Function: int gsl_permutation_inverse (gsl_permutation * INV, const
+          gsl_permutation * P)
+     This function computes the inverse of the permutation P, storing
+     the result in INV.
+
+ -- Function: int gsl_permutation_next (gsl_permutation * P)
+     This function advances the permutation P to the next permutation
+     in lexicographic order and returns `GSL_SUCCESS'.  If no further
+     permutations are available it returns `GSL_FAILURE' and leaves P
+     unmodified.  Starting with the identity permutation and repeatedly
+     applying this function will iterate through all possible
+     permutations of a given order.
+
+ -- Function: int gsl_permutation_prev (gsl_permutation * P)
+     This function steps backwards from the permutation P to the
+     previous permutation in lexicographic order, returning
+     `GSL_SUCCESS'.  If no previous permutation is available it returns
+     `GSL_FAILURE' and leaves P unmodified.
+
+\1f
+File: gsl-ref.info,  Node: Applying Permutations,  Next: Reading and writing permutations,  Prev: Permutation functions,  Up: Permutations
+
+9.6 Applying Permutations
+=========================
+
+ -- Function: int gsl_permute (const size_t * P, double * DATA, size_t
+          STRIDE, size_t N)
+     This function applies the permutation P to the array DATA of size
+     N with stride STRIDE.
+
+ -- Function: int gsl_permute_inverse (const size_t * P, double * DATA,
+          size_t STRIDE, size_t N)
+     This function applies the inverse of the permutation P to the
+     array DATA of size N with stride STRIDE.
+
+ -- Function: int gsl_permute_vector (const gsl_permutation * P,
+          gsl_vector * V)
+     This function applies the permutation P to the elements of the
+     vector V, considered as a row-vector acted on by a permutation
+     matrix from the right, v' = v P.  The j-th column of the
+     permutation matrix P is given by the P_j-th column of the identity
+     matrix. The permutation P and the vector V must have the same
+     length.
+
+ -- Function: int gsl_permute_vector_inverse (const gsl_permutation *
+          P, gsl_vector * V)
+     This function applies the inverse of the permutation P to the
+     elements of the vector V, considered as a row-vector acted on by
+     an inverse permutation matrix from the right, v' = v P^T.  Note
+     that for permutation matrices the inverse is the same as the
+     transpose.  The j-th column of the permutation matrix P is given by
+     the P_j-th column of the identity matrix. The permutation P and
+     the vector V must have the same length.
+
+ -- Function: int gsl_permutation_mul (gsl_permutation * P, const
+          gsl_permutation * PA, const gsl_permutation * PB)
+     This function combines the two permutations PA and PB into a
+     single permutation P, where P = PA * PB.  The permutation P is
+     equivalent to applying PB first and then PA.
+
+\1f
+File: gsl-ref.info,  Node: Reading and writing permutations,  Next: Permutations in cyclic form,  Prev: Applying Permutations,  Up: Permutations
+
+9.7 Reading and writing permutations
+====================================
+
+The library provides functions for reading and writing permutations to a
+file as binary data or formatted text.
+
+ -- Function: int gsl_permutation_fwrite (FILE * STREAM, const
+          gsl_permutation * P)
+     This function writes the elements of the permutation P to the
+     stream STREAM in binary format.  The function returns
+     `GSL_EFAILED' if there was a problem writing to the file.  Since
+     the data is written in the native binary format it may not be
+     portable between different architectures.
+
+ -- Function: int gsl_permutation_fread (FILE * STREAM, gsl_permutation
+          * P)
+     This function reads into the permutation P from the open stream
+     STREAM in binary format.  The permutation P must be preallocated
+     with the correct length since the function uses the size of P to
+     determine how many bytes to read.  The function returns
+     `GSL_EFAILED' if there was a problem reading from the file.  The
+     data is assumed to have been written in the native binary format
+     on the same architecture.
+
+ -- Function: int gsl_permutation_fprintf (FILE * STREAM, const
+          gsl_permutation * P, const char * FORMAT)
+     This function writes the elements of the permutation P
+     line-by-line to the stream STREAM using the format specifier
+     FORMAT, which should be suitable for a type of SIZE_T.  In ISO C99
+     the type modifier `z' represents `size_t', so `"%zu\n"' is a
+     suitable format.(1) The function returns `GSL_EFAILED' if there
+     was a problem writing to the file.
+
+ -- Function: int gsl_permutation_fscanf (FILE * STREAM,
+          gsl_permutation * P)
+     This function reads formatted data from the stream STREAM into the
+     permutation P.  The permutation P must be preallocated with the
+     correct length since the function uses the size of P to determine
+     how many numbers to read.  The function returns `GSL_EFAILED' if
+     there was a problem reading from the file.
+
+   ---------- Footnotes ----------
+
+   (1) In versions of the GNU C library prior to the ISO C99 standard,
+the type modifier `Z' was used instead.
+
+\1f
+File: gsl-ref.info,  Node: Permutations in cyclic form,  Next: Permutation Examples,  Prev: Reading and writing permutations,  Up: Permutations
+
+9.8 Permutations in cyclic form
+===============================
+
+A permutation can be represented in both "linear" and "cyclic"
+notations.  The functions described in this section convert between the
+two forms.  The linear notation is an index mapping, and has already
+been described above.  The cyclic notation expresses a permutation as a
+series of circular rearrangements of groups of elements, or "cycles".
+
+   For example, under the cycle (1 2 3), 1 is replaced by 2, 2 is
+replaced by 3 and 3 is replaced by 1 in a circular fashion. Cycles of
+different sets of elements can be combined independently, for example
+(1 2 3) (4 5) combines the cycle (1 2 3) with the cycle (4 5), which is
+an exchange of elements 4 and 5.  A cycle of length one represents an
+element which is unchanged by the permutation and is referred to as a
+"singleton".
+
+   It can be shown that every permutation can be decomposed into
+combinations of cycles.  The decomposition is not unique, but can always
+be rearranged into a standard "canonical form" by a reordering of
+elements.  The library uses the canonical form defined in Knuth's `Art
+of Computer Programming' (Vol 1, 3rd Ed, 1997) Section 1.3.3, p.178.
+
+   The procedure for obtaining the canonical form given by Knuth is,
+
+  1. Write all singleton cycles explicitly
+
+  2. Within each cycle, put the smallest number first
+
+  3. Order the cycles in decreasing order of the first number in the
+     cycle.
+
+For example, the linear representation (2 4 3 0 1) is represented as (1
+4) (0 2 3) in canonical form. The permutation corresponds to an
+exchange of elements 1 and 4, and rotation of elements 0, 2 and 3.
+
+   The important property of the canonical form is that it can be
+reconstructed from the contents of each cycle without the brackets. In
+addition, by removing the brackets it can be considered as a linear
+representation of a different permutation. In the example given above
+the permutation (2 4 3 0 1) would become (1 4 0 2 3).  This mapping has
+many applications in the theory of permutations.
+
+ -- Function: int gsl_permutation_linear_to_canonical (gsl_permutation
+          * Q, const gsl_permutation * P)
+     This function computes the canonical form of the permutation P and
+     stores it in the output argument Q.
+
+ -- Function: int gsl_permutation_canonical_to_linear (gsl_permutation
+          * P, const gsl_permutation * Q)
+     This function converts a permutation Q in canonical form back into
+     linear form storing it in the output argument P.
+
+ -- Function: size_t gsl_permutation_inversions (const gsl_permutation
+          * P)
+     This function counts the number of inversions in the permutation
+     P.  An inversion is any pair of elements that are not in order.
+     For example, the permutation 2031 has three inversions,
+     corresponding to the pairs (2,0) (2,1) and (3,1).  The identity
+     permutation has no inversions.
+
+ -- Function: size_t gsl_permutation_linear_cycles (const
+          gsl_permutation * P)
+     This function counts the number of cycles in the permutation P,
+     given in linear form.
+
+ -- Function: size_t gsl_permutation_canonical_cycles (const
+          gsl_permutation * Q)
+     This function counts the number of cycles in the permutation Q,
+     given in canonical form.
+
+\1f
+File: gsl-ref.info,  Node: Permutation Examples,  Next: Permutation References and Further Reading,  Prev: Permutations in cyclic form,  Up: Permutations
+
+9.9 Examples
+============
+
+The example program below creates a random permutation (by shuffling the
+elements of the identity) and finds its inverse.
+
+     #include <stdio.h>
+     #include <gsl/gsl_rng.h>
+     #include <gsl/gsl_randist.h>
+     #include <gsl/gsl_permutation.h>
+
+     int
+     main (void)
+     {
+       const size_t N = 10;
+       const gsl_rng_type * T;
+       gsl_rng * r;
+
+       gsl_permutation * p = gsl_permutation_alloc (N);
+       gsl_permutation * q = gsl_permutation_alloc (N);
+
+       gsl_rng_env_setup();
+       T = gsl_rng_default;
+       r = gsl_rng_alloc (T);
+
+       printf ("initial permutation:");
+       gsl_permutation_init (p);
+       gsl_permutation_fprintf (stdout, p, " %u");
+       printf ("\n");
+
+       printf (" random permutation:");
+       gsl_ran_shuffle (r, p->data, N, sizeof(size_t));
+       gsl_permutation_fprintf (stdout, p, " %u");
+       printf ("\n");
+
+       printf ("inverse permutation:");
+       gsl_permutation_inverse (q, p);
+       gsl_permutation_fprintf (stdout, q, " %u");
+       printf ("\n");
+
+       gsl_permutation_free (p);
+       gsl_permutation_free (q);
+       gsl_rng_free (r);
+
+       return 0;
+     }
+
+Here is the output from the program,
+
+     $ ./a.out
+     initial permutation: 0 1 2 3 4 5 6 7 8 9
+      random permutation: 1 3 5 2 7 6 0 4 9 8
+     inverse permutation: 6 0 3 1 7 2 5 4 9 8
+
+The random permutation `p[i]' and its inverse `q[i]' are related
+through the identity `p[q[i]] = i', which can be verified from the
+output.
+
+   The next example program steps forwards through all possible third
+order permutations, starting from the identity,
+
+     #include <stdio.h>
+     #include <gsl/gsl_permutation.h>
+
+     int
+     main (void)
+     {
+       gsl_permutation * p = gsl_permutation_alloc (3);
+
+       gsl_permutation_init (p);
+
+       do
+        {
+           gsl_permutation_fprintf (stdout, p, " %u");
+           printf ("\n");
+        }
+       while (gsl_permutation_next(p) == GSL_SUCCESS);
+
+       gsl_permutation_free (p);
+
+       return 0;
+     }
+
+Here is the output from the program,
+
+     $ ./a.out
+      0 1 2
+      0 2 1
+      1 0 2
+      1 2 0
+      2 0 1
+      2 1 0
+
+The permutations are generated in lexicographic order.  To reverse the
+sequence, begin with the final permutation (which is the reverse of the
+identity) and replace `gsl_permutation_next' with
+`gsl_permutation_prev'.
+
+\1f
+File: gsl-ref.info,  Node: Permutation References and Further Reading,  Prev: Permutation Examples,  Up: Permutations
+
+9.10 References and Further Reading
+===================================
+
+The subject of permutations is covered extensively in Knuth's `Sorting
+and Searching',
+
+     Donald E. Knuth, `The Art of Computer Programming: Sorting and
+     Searching' (Vol 3, 3rd Ed, 1997), Addison-Wesley, ISBN 0201896850.
+
+For the definition of the "canonical form" see,
+
+     Donald E. Knuth, `The Art of Computer Programming: Fundamental
+     Algorithms' (Vol 1, 3rd Ed, 1997), Addison-Wesley, ISBN 0201896850.
+     Section 1.3.3, `An Unusual Correspondence', p.178-179.
+
+\1f
+File: gsl-ref.info,  Node: Combinations,  Next: Multisets,  Prev: Permutations,  Up: Top
+
+10 Combinations
+***************
+
+This chapter describes functions for creating and manipulating
+combinations. A combination c is represented by an array of k integers
+in the range 0 to n-1, where each value c_i occurs at most once.  The
+combination c corresponds to indices of k elements chosen from an n
+element vector.  Combinations are useful for iterating over all
+k-element subsets of a set.
+
+   The functions described in this chapter are defined in the header
+file `gsl_combination.h'.
+
+* Menu:
+
+* The Combination struct::
+* Combination allocation::
+* Accessing combination elements::
+* Combination properties::
+* Combination functions::
+* Reading and writing combinations::
+* Combination Examples::
+* Combination References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: The Combination struct,  Next: Combination allocation,  Up: Combinations
+
+10.1 The Combination struct
+===========================
+
+A combination is defined by a structure containing three components, the
+values of n and k, and a pointer to the combination array.  The
+elements of the combination array are all of type `size_t', and are
+stored in increasing order.  The `gsl_combination' structure looks like
+this,
+
+     typedef struct
+     {
+       size_t n;
+       size_t k;
+       size_t *data;
+     } gsl_combination;
+
+
+\1f
+File: gsl-ref.info,  Node: Combination allocation,  Next: Accessing combination elements,  Prev: The Combination struct,  Up: Combinations
+
+10.2 Combination allocation
+===========================
+
+ -- Function: gsl_combination * gsl_combination_alloc (size_t N, size_t
+          K)
+     This function allocates memory for a new combination with
+     parameters N, K.  The combination is not initialized and its
+     elements are undefined.  Use the function `gsl_combination_calloc'
+     if you want to create a combination which is initialized to the
+     lexicographically first combination. A null pointer is returned if
+     insufficient memory is available to create the combination.
+
+ -- Function: gsl_combination * gsl_combination_calloc (size_t N,
+          size_t K)
+     This function allocates memory for a new combination with
+     parameters N, K and initializes it to the lexicographically first
+     combination. A null pointer is returned if insufficient memory is
+     available to create the combination.
+
+ -- Function: void gsl_combination_init_first (gsl_combination * C)
+     This function initializes the combination C to the
+     lexicographically first combination, i.e.  (0,1,2,...,k-1).
+
+ -- Function: void gsl_combination_init_last (gsl_combination * C)
+     This function initializes the combination C to the
+     lexicographically last combination, i.e.  (n-k,n-k+1,...,n-1).
+
+ -- Function: void gsl_combination_free (gsl_combination * C)
+     This function frees all the memory used by the combination C.
+
+ -- Function: int gsl_combination_memcpy (gsl_combination * DEST, const
+          gsl_combination * SRC)
+     This function copies the elements of the combination SRC into the
+     combination DEST.  The two combinations must have the same size.
+
+\1f
+File: gsl-ref.info,  Node: Accessing combination elements,  Next: Combination properties,  Prev: Combination allocation,  Up: Combinations
+
+10.3 Accessing combination elements
+===================================
+
+The following function can be used to access the elements of a
+combination.
+
+ -- Function: size_t gsl_combination_get (const gsl_combination * C,
+          const size_t I)
+     This function returns the value of the I-th element of the
+     combination C.  If I lies outside the allowed range of 0 to K-1
+     then the error handler is invoked and 0 is returned.  An inline
+     version of this function is used when `HAVE_INLINE' is defined.
+
+\1f
+File: gsl-ref.info,  Node: Combination properties,  Next: Combination functions,  Prev: Accessing combination elements,  Up: Combinations
+
+10.4 Combination properties
+===========================
+
+ -- Function: size_t gsl_combination_n (const gsl_combination * C)
+     This function returns the range (n) of the combination C.
+
+ -- Function: size_t gsl_combination_k (const gsl_combination * C)
+     This function returns the number of elements (k) in the
+     combination C.
+
+ -- Function: size_t * gsl_combination_data (const gsl_combination * C)
+     This function returns a pointer to the array of elements in the
+     combination C.
+
+ -- Function: int gsl_combination_valid (gsl_combination * C)
+     This function checks that the combination C is valid.  The K
+     elements should lie in the range 0 to N-1, with each value
+     occurring once at most and in increasing order.
+
+\1f
+File: gsl-ref.info,  Node: Combination functions,  Next: Reading and writing combinations,  Prev: Combination properties,  Up: Combinations
+
+10.5 Combination functions
+==========================
+
+ -- Function: int gsl_combination_next (gsl_combination * C)
+     This function advances the combination C to the next combination
+     in lexicographic order and returns `GSL_SUCCESS'.  If no further
+     combinations are available it returns `GSL_FAILURE' and leaves C
+     unmodified.  Starting with the first combination and repeatedly
+     applying this function will iterate through all possible
+     combinations of a given order.
+
+ -- Function: int gsl_combination_prev (gsl_combination * C)
+     This function steps backwards from the combination C to the
+     previous combination in lexicographic order, returning
+     `GSL_SUCCESS'.  If no previous combination is available it returns
+     `GSL_FAILURE' and leaves C unmodified.
+
+\1f
+File: gsl-ref.info,  Node: Reading and writing combinations,  Next: Combination Examples,  Prev: Combination functions,  Up: Combinations
+
+10.6 Reading and writing combinations
+=====================================
+
+The library provides functions for reading and writing combinations to a
+file as binary data or formatted text.
+
+ -- Function: int gsl_combination_fwrite (FILE * STREAM, const
+          gsl_combination * C)
+     This function writes the elements of the combination C to the
+     stream STREAM in binary format.  The function returns
+     `GSL_EFAILED' if there was a problem writing to the file.  Since
+     the data is written in the native binary format it may not be
+     portable between different architectures.
+
+ -- Function: int gsl_combination_fread (FILE * STREAM, gsl_combination
+          * C)
+     This function reads elements from the open stream STREAM into the
+     combination C in binary format.  The combination C must be
+     preallocated with correct values of n and k since the function
+     uses the size of C to determine how many bytes to read.  The
+     function returns `GSL_EFAILED' if there was a problem reading from
+     the file.  The data is assumed to have been written in the native
+     binary format on the same architecture.
+
+ -- Function: int gsl_combination_fprintf (FILE * STREAM, const
+          gsl_combination * C, const char * FORMAT)
+     This function writes the elements of the combination C
+     line-by-line to the stream STREAM using the format specifier
+     FORMAT, which should be suitable for a type of SIZE_T.  In ISO C99
+     the type modifier `z' represents `size_t', so `"%zu\n"' is a
+     suitable format.(1)  The function returns `GSL_EFAILED' if there
+     was a problem writing to the file.
+
+ -- Function: int gsl_combination_fscanf (FILE * STREAM,
+          gsl_combination * C)
+     This function reads formatted data from the stream STREAM into the
+     combination C.  The combination C must be preallocated with
+     correct values of n and k since the function uses the size of C to
+     determine how many numbers to read.  The function returns
+     `GSL_EFAILED' if there was a problem reading from the file.
+
+   ---------- Footnotes ----------
+
+   (1) In versions of the GNU C library prior to the ISO C99 standard,
+the type modifier `Z' was used instead.
+

diff --git a/util/X86LINUX64/share/info/gsl-ref.info-2 b/util/X86LINUX64/share/info/gsl-ref.info-2
new file mode 100644 (file)
index 0000000..c3743f3
--- /dev/null
+++ b/util/X86LINUX64/share/info/gsl-ref.info-2
@@ -0,0 +1,7031 @@
+This is gsl-ref.info, produced by makeinfo version 4.13 from
+gsl-ref.texi.
+
+INFO-DIR-SECTION Software libraries
+START-INFO-DIR-ENTRY
+* gsl-ref: (gsl-ref).                   GNU Scientific Library - Reference
+END-INFO-DIR-ENTRY
+
+   Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004,
+2005, 2006, 2007, 2008, 2009, 2010, 2011 The GSL Team.
+
+   Permission is granted to copy, distribute and/or modify this document
+under the terms of the GNU Free Documentation License, Version 1.3 or
+any later version published by the Free Software Foundation; with the
+Invariant Sections being "GNU General Public License" and "Free Software
+Needs Free Documentation", the Front-Cover text being "A GNU Manual",
+and with the Back-Cover Text being (a) (see below).  A copy of the
+license is included in the section entitled "GNU Free Documentation
+License".
+
+   (a) The Back-Cover Text is: "You have the freedom to copy and modify
+this GNU Manual."
+
+\1f
+File: gsl-ref.info,  Node: Combination Examples,  Next: Combination References and Further Reading,  Prev: Reading and writing combinations,  Up: Combinations
+
+10.7 Examples
+=============
+
+The example program below prints all subsets of the set {0,1,2,3}
+ordered by size.  Subsets of the same size are ordered
+lexicographically.
+
+     #include <stdio.h>
+     #include <gsl/gsl_combination.h>
+
+     int
+     main (void)
+     {
+       gsl_combination * c;
+       size_t i;
+
+       printf ("All subsets of {0,1,2,3} by size:\n") ;
+       for (i = 0; i <= 4; i++)
+         {
+           c = gsl_combination_calloc (4, i);
+           do
+             {
+               printf ("{");
+               gsl_combination_fprintf (stdout, c, " %u");
+               printf (" }\n");
+             }
+           while (gsl_combination_next (c) == GSL_SUCCESS);
+           gsl_combination_free (c);
+         }
+
+       return 0;
+     }
+
+Here is the output from the program,
+
+     $ ./a.out
+     All subsets of {0,1,2,3} by size:
+     { }
+     { 0 }
+     { 1 }
+     { 2 }
+     { 3 }
+     { 0 1 }
+     { 0 2 }
+     { 0 3 }
+     { 1 2 }
+     { 1 3 }
+     { 2 3 }
+     { 0 1 2 }
+     { 0 1 3 }
+     { 0 2 3 }
+     { 1 2 3 }
+     { 0 1 2 3 }
+
+All 16 subsets are generated, and the subsets of each size are sorted
+lexicographically.
+
+\1f
+File: gsl-ref.info,  Node: Combination References and Further Reading,  Prev: Combination Examples,  Up: Combinations
+
+10.8 References and Further Reading
+===================================
+
+Further information on combinations can be found in,
+
+     Donald L. Kreher, Douglas R. Stinson, `Combinatorial Algorithms:
+     Generation, Enumeration and Search', 1998, CRC Press LLC, ISBN
+     084933988X
+
+
+\1f
+File: gsl-ref.info,  Node: Multisets,  Next: Sorting,  Prev: Combinations,  Up: Top
+
+11 Multisets
+************
+
+This chapter describes functions for creating and manipulating
+multisets. A multiset c is represented by an array of k integers in the
+range 0 to n-1, where each value c_i may occur more than once.  The
+multiset c corresponds to indices of k elements chosen from an n
+element vector with replacement.  In mathematical terms, n is the
+cardinality of the multiset while k is the maximum multiplicity of any
+value.  Multisets are useful, for example, when iterating over the
+indices of a k-th order symmetric tensor in n-space.
+
+   The functions described in this chapter are defined in the header
+file `gsl_multiset.h'.
+
+* Menu:
+
+* The Multiset struct::
+* Multiset allocation::
+* Accessing multiset elements::
+* Multiset properties::
+* Multiset functions::
+* Reading and writing multisets::
+* Multiset Examples::
+
+\1f
+File: gsl-ref.info,  Node: The Multiset struct,  Next: Multiset allocation,  Up: Multisets
+
+11.1 The Multiset struct
+========================
+
+A multiset is defined by a structure containing three components, the
+values of n and k, and a pointer to the multiset array.  The elements
+of the multiset array are all of type `size_t', and are stored in
+increasing order.  The `gsl_multiset' structure looks like this,
+
+     typedef struct
+     {
+       size_t n;
+       size_t k;
+       size_t *data;
+     } gsl_multiset;
+
+
+\1f
+File: gsl-ref.info,  Node: Multiset allocation,  Next: Accessing multiset elements,  Prev: The Multiset struct,  Up: Multisets
+
+11.2 Multiset allocation
+========================
+
+ -- Function: gsl_multiset * gsl_multiset_alloc (size_t N, size_t K)
+     This function allocates memory for a new multiset with parameters
+     N, K.  The multiset is not initialized and its elements are
+     undefined.  Use the function `gsl_multiset_calloc' if you want to
+     create a multiset which is initialized to the lexicographically
+     first multiset element. A null pointer is returned if insufficient
+     memory is available to create the multiset.
+
+ -- Function: gsl_multiset * gsl_multiset_calloc (size_t N, size_t K)
+     This function allocates memory for a new multiset with parameters
+     N, K and initializes it to the lexicographically first multiset
+     element. A null pointer is returned if insufficient memory is
+     available to create the multiset.
+
+ -- Function: void gsl_multiset_init_first (gsl_multiset * C)
+     This function initializes the multiset C to the lexicographically
+     first multiset element, i.e. 0 repeated k times.
+
+ -- Function: void gsl_multiset_init_last (gsl_multiset * C)
+     This function initializes the multiset C to the lexicographically
+     last multiset element, i.e. n-1 repeated k times.
+
+ -- Function: void gsl_multiset_free (gsl_multiset * C)
+     This function frees all the memory used by the multiset C.
+
+ -- Function: int gsl_multiset_memcpy (gsl_multiset * DEST, const
+          gsl_multiset * SRC)
+     This function copies the elements of the multiset SRC into the
+     multiset DEST.  The two multisets must have the same size.
+
+\1f
+File: gsl-ref.info,  Node: Accessing multiset elements,  Next: Multiset properties,  Prev: Multiset allocation,  Up: Multisets
+
+11.3 Accessing multiset elements
+================================
+
+The following function can be used to access the elements of a multiset.
+
+ -- Function: size_t gsl_multiset_get (const gsl_multiset * C, const
+          size_t I)
+     This function returns the value of the I-th element of the
+     multiset C.  If I lies outside the allowed range of 0 to K-1 then
+     the error handler is invoked and 0 is returned.  An inline version
+     of this function is used when `HAVE_INLINE' is defined.
+
+\1f
+File: gsl-ref.info,  Node: Multiset properties,  Next: Multiset functions,  Prev: Accessing multiset elements,  Up: Multisets
+
+11.4 Multiset properties
+========================
+
+ -- Function: size_t gsl_multiset_n (const gsl_multiset * C)
+     This function returns the range (n) of the multiset C.
+
+ -- Function: size_t gsl_multiset_k (const gsl_multiset * C)
+     This function returns the number of elements (k) in the multiset C.
+
+ -- Function: size_t * gsl_multiset_data (const gsl_multiset * C)
+     This function returns a pointer to the array of elements in the
+     multiset C.
+
+ -- Function: int gsl_multiset_valid (gsl_multiset * C)
+     This function checks that the multiset C is valid.  The K elements
+     should lie in the range 0 to N-1, with each value occurring in
+     nondecreasing order.
+
+\1f
+File: gsl-ref.info,  Node: Multiset functions,  Next: Reading and writing multisets,  Prev: Multiset properties,  Up: Multisets
+
+11.5 Multiset functions
+=======================
+
+ -- Function: int gsl_multiset_next (gsl_multiset * C)
+     This function advances the multiset C to the next multiset element
+     in lexicographic order and returns `GSL_SUCCESS'.  If no further
+     multisets elements are available it returns `GSL_FAILURE' and
+     leaves C unmodified.  Starting with the first multiset and
+     repeatedly applying this function will iterate through all
+     possible multisets of a given order.
+
+ -- Function: int gsl_multiset_prev (gsl_multiset * C)
+     This function steps backwards from the multiset C to the previous
+     multiset element in lexicographic order, returning `GSL_SUCCESS'.
+     If no previous multiset is available it returns `GSL_FAILURE' and
+     leaves C unmodified.
+
+\1f
+File: gsl-ref.info,  Node: Reading and writing multisets,  Next: Multiset Examples,  Prev: Multiset functions,  Up: Multisets
+
+11.6 Reading and writing multisets
+==================================
+
+The library provides functions for reading and writing multisets to a
+file as binary data or formatted text.
+
+ -- Function: int gsl_multiset_fwrite (FILE * STREAM, const
+          gsl_multiset * C)
+     This function writes the elements of the multiset C to the stream
+     STREAM in binary format.  The function returns `GSL_EFAILED' if
+     there was a problem writing to the file.  Since the data is
+     written in the native binary format it may not be portable between
+     different architectures.
+
+ -- Function: int gsl_multiset_fread (FILE * STREAM, gsl_multiset * C)
+     This function reads elements from the open stream STREAM into the
+     multiset C in binary format.  The multiset C must be preallocated
+     with correct values of n and k since the function uses the size of
+     C to determine how many bytes to read.  The function returns
+     `GSL_EFAILED' if there was a problem reading from the file.  The
+     data is assumed to have been written in the native binary format
+     on the same architecture.
+
+ -- Function: int gsl_multiset_fprintf (FILE * STREAM, const
+          gsl_multiset * C, const char * FORMAT)
+     This function writes the elements of the multiset C line-by-line
+     to the stream STREAM using the format specifier FORMAT, which
+     should be suitable for a type of SIZE_T.  In ISO C99 the type
+     modifier `z' represents `size_t', so `"%zu\n"' is a suitable
+     format.(1)  The function returns `GSL_EFAILED' if there was a
+     problem writing to the file.
+
+ -- Function: int gsl_multiset_fscanf (FILE * STREAM, gsl_multiset * C)
+     This function reads formatted data from the stream STREAM into the
+     multiset C.  The multiset C must be preallocated with correct
+     values of n and k since the function uses the size of C to
+     determine how many numbers to read.  The function returns
+     `GSL_EFAILED' if there was a problem reading from the file.
+
+   ---------- Footnotes ----------
+
+   (1) In versions of the GNU C library prior to the ISO C99 standard,
+the type modifier `Z' was used instead.
+
+\1f
+File: gsl-ref.info,  Node: Multiset Examples,  Prev: Reading and writing multisets,  Up: Multisets
+
+11.7 Examples
+=============
+
+The example program below prints all multisets elements containing the
+values {0,1,2,3} ordered by size.  Multiset elements of the same size
+are ordered lexicographically.
+
+     #include <stdio.h>
+     #include <gsl/gsl_multiset.h>
+
+     int
+     main (void)
+     {
+       gsl_multiset * c;
+       size_t i;
+
+       printf ("All multisets of {0,1,2,3} by size:\n") ;
+       for (i = 0; i <= 4; i++)
+         {
+           c = gsl_multiset_calloc (4, i);
+           do
+             {
+               printf ("{");
+               gsl_multiset_fprintf (stdout, c, " %u");
+               printf (" }\n");
+             }
+           while (gsl_multiset_next (c) == GSL_SUCCESS);
+           gsl_multiset_free (c);
+         }
+
+       return 0;
+     }
+
+Here is the output from the program,
+
+     $ ./a.out
+     all multisets of {0,1,2,3} by size:
+     { }
+     { 0 }
+     { 1 }
+     { 2 }
+     { 3 }
+     { 0 0 }
+     { 0 1 }
+     { 0 2 }
+     { 0 3 }
+     { 1 1 }
+     { 1 2 }
+     { 1 3 }
+     { 2 2 }
+     { 2 3 }
+     { 3 3 }
+     { 0 0 0 }
+     { 0 0 1 }
+     { 0 0 2 }
+     { 0 0 3 }
+     { 0 1 1 }
+     { 0 1 2 }
+     { 0 1 3 }
+     { 0 2 2 }
+     { 0 2 3 }
+     { 0 3 3 }
+     { 1 1 1 }
+     { 1 1 2 }
+     { 1 1 3 }
+     { 1 2 2 }
+     { 1 2 3 }
+     { 1 3 3 }
+     { 2 2 2 }
+     { 2 2 3 }
+     { 2 3 3 }
+     { 3 3 3 }
+     { 0 0 0 0 }
+     { 0 0 0 1 }
+     { 0 0 0 2 }
+     { 0 0 0 3 }
+     { 0 0 1 1 }
+     { 0 0 1 2 }
+     { 0 0 1 3 }
+     { 0 0 2 2 }
+     { 0 0 2 3 }
+     { 0 0 3 3 }
+     { 0 1 1 1 }
+     { 0 1 1 2 }
+     { 0 1 1 3 }
+     { 0 1 2 2 }
+     { 0 1 2 3 }
+     { 0 1 3 3 }
+     { 0 2 2 2 }
+     { 0 2 2 3 }
+     { 0 2 3 3 }
+     { 0 3 3 3 }
+     { 1 1 1 1 }
+     { 1 1 1 2 }
+     { 1 1 1 3 }
+     { 1 1 2 2 }
+     { 1 1 2 3 }
+     { 1 1 3 3 }
+     { 1 2 2 2 }
+     { 1 2 2 3 }
+     { 1 2 3 3 }
+     { 1 3 3 3 }
+     { 2 2 2 2 }
+     { 2 2 2 3 }
+     { 2 2 3 3 }
+     { 2 3 3 3 }
+     { 3 3 3 3 }
+
+All 70 multisets are generated and sorted lexicographically.
+
+\1f
+File: gsl-ref.info,  Node: Sorting,  Next: BLAS Support,  Prev: Multisets,  Up: Top
+
+12 Sorting
+**********
+
+This chapter describes functions for sorting data, both directly and
+indirectly (using an index).  All the functions use the "heapsort"
+algorithm.  Heapsort is an O(N \log N) algorithm which operates
+in-place and does not require any additional storage.  It also provides
+consistent performance, the running time for its worst-case (ordered
+data) being not significantly longer than the average and best cases.
+Note that the heapsort algorithm does not preserve the relative ordering
+of equal elements--it is an "unstable" sort.  However the resulting
+order of equal elements will be consistent across different platforms
+when using these functions.
+
+* Menu:
+
+* Sorting objects::
+* Sorting vectors::
+* Selecting the k smallest or largest elements::
+* Computing the rank::
+* Sorting Examples::
+* Sorting References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Sorting objects,  Next: Sorting vectors,  Up: Sorting
+
+12.1 Sorting objects
+====================
+
+The following function provides a simple alternative to the standard
+library function `qsort'.  It is intended for systems lacking `qsort',
+not as a replacement for it.  The function `qsort' should be used
+whenever possible, as it will be faster and can provide stable ordering
+of equal elements.  Documentation for `qsort' is available in the `GNU
+C Library Reference Manual'.
+
+   The functions described in this section are defined in the header
+file `gsl_heapsort.h'.
+
+ -- Function: void gsl_heapsort (void * ARRAY, size_t COUNT, size_t
+          SIZE, gsl_comparison_fn_t COMPARE)
+     This function sorts the COUNT elements of the array ARRAY, each of
+     size SIZE, into ascending order using the comparison function
+     COMPARE.  The type of the comparison function is defined by,
+
+          int (*gsl_comparison_fn_t) (const void * a,
+                                      const void * b)
+
+     A comparison function should return a negative integer if the first
+     argument is less than the second argument, `0' if the two arguments
+     are equal and a positive integer if the first argument is greater
+     than the second argument.
+
+     For example, the following function can be used to sort doubles
+     into ascending numerical order.
+
+          int
+          compare_doubles (const double * a,
+                           const double * b)
+          {
+              if (*a > *b)
+                 return 1;
+              else if (*a < *b)
+                 return -1;
+              else
+                 return 0;
+          }
+
+     The appropriate function call to perform the sort is,
+
+          gsl_heapsort (array, count, sizeof(double),
+                        compare_doubles);
+
+     Note that unlike `qsort' the heapsort algorithm cannot be made into
+     a stable sort by pointer arithmetic.  The trick of comparing
+     pointers for equal elements in the comparison function does not
+     work for the heapsort algorithm.  The heapsort algorithm performs
+     an internal rearrangement of the data which destroys its initial
+     ordering.
+
+ -- Function: int gsl_heapsort_index (size_t * P, const void * ARRAY,
+          size_t COUNT, size_t SIZE, gsl_comparison_fn_t COMPARE)
+     This function indirectly sorts the COUNT elements of the array
+     ARRAY, each of size SIZE, into ascending order using the
+     comparison function COMPARE.  The resulting permutation is stored
+     in P, an array of length N.  The elements of P give the index of
+     the array element which would have been stored in that position if
+     the array had been sorted in place.  The first element of P gives
+     the index of the least element in ARRAY, and the last element of P
+     gives the index of the greatest element in ARRAY.  The array
+     itself is not changed.
+
+\1f
+File: gsl-ref.info,  Node: Sorting vectors,  Next: Selecting the k smallest or largest elements,  Prev: Sorting objects,  Up: Sorting
+
+12.2 Sorting vectors
+====================
+
+The following functions will sort the elements of an array or vector,
+either directly or indirectly.  They are defined for all real and
+integer types using the normal suffix rules.  For example, the `float'
+versions of the array functions are `gsl_sort_float' and
+`gsl_sort_float_index'.  The corresponding vector functions are
+`gsl_sort_vector_float' and `gsl_sort_vector_float_index'.  The
+prototypes are available in the header files `gsl_sort_float.h'
+`gsl_sort_vector_float.h'.  The complete set of prototypes can be
+included using the header files `gsl_sort.h' and `gsl_sort_vector.h'.
+
+   There are no functions for sorting complex arrays or vectors, since
+the ordering of complex numbers is not uniquely defined.  To sort a
+complex vector by magnitude compute a real vector containing the
+magnitudes of the complex elements, and sort this vector indirectly.
+The resulting index gives the appropriate ordering of the original
+complex vector.
+
+ -- Function: void gsl_sort (double * DATA, size_t STRIDE, size_t N)
+     This function sorts the N elements of the array DATA with stride
+     STRIDE into ascending numerical order.
+
+ -- Function: void gsl_sort_vector (gsl_vector * V)
+     This function sorts the elements of the vector V into ascending
+     numerical order.
+
+ -- Function: void gsl_sort_index (size_t * P, const double * DATA,
+          size_t STRIDE, size_t N)
+     This function indirectly sorts the N elements of the array DATA
+     with stride STRIDE into ascending order, storing the resulting
+     permutation in P.  The array P must be allocated with a sufficient
+     length to store the N elements of the permutation.  The elements
+     of P give the index of the array element which would have been
+     stored in that position if the array had been sorted in place.
+     The array DATA is not changed.
+
+ -- Function: int gsl_sort_vector_index (gsl_permutation * P, const
+          gsl_vector * V)
+     This function indirectly sorts the elements of the vector V into
+     ascending order, storing the resulting permutation in P.  The
+     elements of P give the index of the vector element which would
+     have been stored in that position if the vector had been sorted in
+     place.  The first element of P gives the index of the least element
+     in V, and the last element of P gives the index of the greatest
+     element in V.  The vector V is not changed.
+
+\1f
+File: gsl-ref.info,  Node: Selecting the k smallest or largest elements,  Next: Computing the rank,  Prev: Sorting vectors,  Up: Sorting
+
+12.3 Selecting the k smallest or largest elements
+=================================================
+
+The functions described in this section select the k smallest or
+largest elements of a data set of size N.  The routines use an O(kN)
+direct insertion algorithm which is suited to subsets that are small
+compared with the total size of the dataset. For example, the routines
+are useful for selecting the 10 largest values from one million data
+points, but not for selecting the largest 100,000 values.  If the
+subset is a significant part of the total dataset it may be faster to
+sort all the elements of the dataset directly with an O(N \log N)
+algorithm and obtain the smallest or largest values that way.
+
+ -- Function: int gsl_sort_smallest (double * DEST, size_t K, const
+          double * SRC, size_t STRIDE, size_t N)
+     This function copies the K smallest elements of the array SRC, of
+     size N and stride STRIDE, in ascending numerical order into the
+     array DEST.  The size K of the subset must be less than or equal
+     to N.  The data SRC is not modified by this operation.
+
+ -- Function: int gsl_sort_largest (double * DEST, size_t K, const
+          double * SRC, size_t STRIDE, size_t N)
+     This function copies the K largest elements of the array SRC, of
+     size N and stride STRIDE, in descending numerical order into the
+     array DEST. K must be less than or equal to N. The data SRC is not
+     modified by this operation.
+
+ -- Function: int gsl_sort_vector_smallest (double * DEST, size_t K,
+          const gsl_vector * V)
+ -- Function: int gsl_sort_vector_largest (double * DEST, size_t K,
+          const gsl_vector * V)
+     These functions copy the K smallest or largest elements of the
+     vector V into the array DEST. K must be less than or equal to the
+     length of the vector V.
+
+   The following functions find the indices of the k smallest or
+largest elements of a dataset,
+
+ -- Function: int gsl_sort_smallest_index (size_t * P, size_t K, const
+          double * SRC, size_t STRIDE, size_t N)
+     This function stores the indices of the K smallest elements of the
+     array SRC, of size N and stride STRIDE, in the array P.  The
+     indices are chosen so that the corresponding data is in ascending
+     numerical order.  K must be less than or equal to N. The data SRC
+     is not modified by this operation.
+
+ -- Function: int gsl_sort_largest_index (size_t * P, size_t K, const
+          double * SRC, size_t STRIDE, size_t N)
+     This function stores the indices of the K largest elements of the
+     array SRC, of size N and stride STRIDE, in the array P.  The
+     indices are chosen so that the corresponding data is in descending
+     numerical order.  K must be less than or equal to N. The data SRC
+     is not modified by this operation.
+
+ -- Function: int gsl_sort_vector_smallest_index (size_t * P, size_t K,
+          const gsl_vector * V)
+ -- Function: int gsl_sort_vector_largest_index (size_t * P, size_t K,
+          const gsl_vector * V)
+     These functions store the indices of the K smallest or largest
+     elements of the vector V in the array P. K must be less than or
+     equal to the length of the vector V.
+
+\1f
+File: gsl-ref.info,  Node: Computing the rank,  Next: Sorting Examples,  Prev: Selecting the k smallest or largest elements,  Up: Sorting
+
+12.4 Computing the rank
+=======================
+
+The "rank" of an element is its order in the sorted data.  The rank is
+the inverse of the index permutation, P.  It can be computed using the
+following algorithm,
+
+     for (i = 0; i < p->size; i++)
+     {
+         size_t pi = p->data[i];
+         rank->data[pi] = i;
+     }
+
+This can be computed directly from the function
+`gsl_permutation_inverse(rank,p)'.
+
+   The following function will print the rank of each element of the
+vector V,
+
+     void
+     print_rank (gsl_vector * v)
+     {
+       size_t i;
+       size_t n = v->size;
+       gsl_permutation * perm = gsl_permutation_alloc(n);
+       gsl_permutation * rank = gsl_permutation_alloc(n);
+
+       gsl_sort_vector_index (perm, v);
+       gsl_permutation_inverse (rank, perm);
+
+       for (i = 0; i < n; i++)
+        {
+         double vi = gsl_vector_get(v, i);
+         printf ("element = %d, value = %g, rank = %d\n",
+                  i, vi, rank->data[i]);
+        }
+
+       gsl_permutation_free (perm);
+       gsl_permutation_free (rank);
+     }
+
+\1f
+File: gsl-ref.info,  Node: Sorting Examples,  Next: Sorting References and Further Reading,  Prev: Computing the rank,  Up: Sorting
+
+12.5 Examples
+=============
+
+The following example shows how to use the permutation P to print the
+elements of the vector V in ascending order,
+
+     gsl_sort_vector_index (p, v);
+
+     for (i = 0; i < v->size; i++)
+     {
+         double vpi = gsl_vector_get (v, p->data[i]);
+         printf ("order = %d, value = %g\n", i, vpi);
+     }
+
+The next example uses the function `gsl_sort_smallest' to select the 5
+smallest numbers from 100000 uniform random variates stored in an array,
+
+     #include <gsl/gsl_rng.h>
+     #include <gsl/gsl_sort_double.h>
+
+     int
+     main (void)
+     {
+       const gsl_rng_type * T;
+       gsl_rng * r;
+
+       size_t i, k = 5, N = 100000;
+
+       double * x = malloc (N * sizeof(double));
+       double * small = malloc (k * sizeof(double));
+
+       gsl_rng_env_setup();
+
+       T = gsl_rng_default;
+       r = gsl_rng_alloc (T);
+
+       for (i = 0; i < N; i++)
+         {
+           x[i] = gsl_rng_uniform(r);
+         }
+
+       gsl_sort_smallest (small, k, x, 1, N);
+
+       printf ("%d smallest values from %d\n", k, N);
+
+       for (i = 0; i < k; i++)
+         {
+           printf ("%d: %.18f\n", i, small[i]);
+         }
+
+       free (x);
+       free (small);
+       gsl_rng_free (r);
+       return 0;
+     }
+   The output lists the 5 smallest values, in ascending order,
+
+     $ ./a.out
+     5 smallest values from 100000
+     0: 0.000003489200025797
+     1: 0.000008199829608202
+     2: 0.000008953968062997
+     3: 0.000010712770745158
+     4: 0.000033531803637743
+
+\1f
+File: gsl-ref.info,  Node: Sorting References and Further Reading,  Prev: Sorting Examples,  Up: Sorting
+
+12.6 References and Further Reading
+===================================
+
+The subject of sorting is covered extensively in Knuth's `Sorting and
+Searching',
+
+     Donald E. Knuth, `The Art of Computer Programming: Sorting and
+     Searching' (Vol 3, 3rd Ed, 1997), Addison-Wesley, ISBN 0201896850.
+
+The Heapsort algorithm is described in the following book,
+
+     Robert Sedgewick, `Algorithms in C', Addison-Wesley, ISBN
+     0201514257.
+
+\1f
+File: gsl-ref.info,  Node: BLAS Support,  Next: Linear Algebra,  Prev: Sorting,  Up: Top
+
+13 BLAS Support
+***************
+
+The Basic Linear Algebra Subprograms (BLAS) define a set of fundamental
+operations on vectors and matrices which can be used to create optimized
+higher-level linear algebra functionality.
+
+   The library provides a low-level layer which corresponds directly to
+the C-language BLAS standard, referred to here as "CBLAS", and a
+higher-level interface for operations on GSL vectors and matrices.
+Users who are interested in simple operations on GSL vector and matrix
+objects should use the high-level layer described in this chapter.  The
+functions are declared in the file `gsl_blas.h' and should satisfy the
+needs of most users.
+
+   Note that GSL matrices are implemented using dense-storage so the
+interface only includes the corresponding dense-storage BLAS functions.
+The full BLAS functionality for band-format and packed-format matrices
+is available through the low-level CBLAS interface.  Similarly, GSL
+vectors are restricted to positive strides, whereas the low-level CBLAS
+interface supports negative strides as specified in the BLAS
+standard.(1)
+
+   The interface for the `gsl_cblas' layer is specified in the file
+`gsl_cblas.h'.  This interface corresponds to the BLAS Technical
+Forum's standard for the C interface to legacy BLAS implementations.
+Users who have access to other conforming CBLAS implementations can use
+these in place of the version provided by the library.  Note that users
+who have only a Fortran BLAS library can use a CBLAS conformant wrapper
+to convert it into a CBLAS library.  A reference CBLAS wrapper for
+legacy Fortran implementations exists as part of the CBLAS standard and
+can be obtained from Netlib.  The complete set of CBLAS functions is
+listed in an appendix (*note GSL CBLAS Library::).
+
+   There are three levels of BLAS operations,
+
+Level 1
+     Vector operations, e.g. y = \alpha x + y
+
+Level 2
+     Matrix-vector operations, e.g. y = \alpha A x + \beta y
+
+Level 3
+     Matrix-matrix operations, e.g. C = \alpha A B + C
+
+Each routine has a name which specifies the operation, the type of
+matrices involved and their precisions.  Some of the most common
+operations and their names are given below,
+
+DOT
+     scalar product, x^T y
+
+AXPY
+     vector sum, \alpha x + y
+
+MV
+     matrix-vector product, A x
+
+SV
+     matrix-vector solve, inv(A) x
+
+MM
+     matrix-matrix product, A B
+
+SM
+     matrix-matrix solve, inv(A) B
+
+The types of matrices are,
+
+GE
+     general
+
+GB
+     general band
+
+SY
+     symmetric
+
+SB
+     symmetric band
+
+SP
+     symmetric packed
+
+HE
+     hermitian
+
+HB
+     hermitian band
+
+HP
+     hermitian packed
+
+TR
+     triangular
+
+TB
+     triangular band
+
+TP
+     triangular packed
+
+Each operation is defined for four precisions,
+
+S
+     single real
+
+D
+     double real
+
+C
+     single complex
+
+Z
+     double complex
+
+Thus, for example, the name SGEMM stands for "single-precision general
+matrix-matrix multiply" and ZGEMM stands for "double-precision complex
+matrix-matrix multiply".
+
+   Note that the vector and matrix arguments to BLAS functions must not
+be aliased, as the results are undefined when the underlying arrays
+overlap (*note Aliasing of arrays::).
+
+* Menu:
+
+* GSL BLAS Interface::
+* BLAS Examples::
+* BLAS References and Further Reading::
+
+   ---------- Footnotes ----------
+
+   (1) In the low-level CBLAS interface, a negative stride accesses the
+vector elements in reverse order, i.e. the i-th element is given by
+(N-i)*|incx| for incx < 0.
+
+\1f
+File: gsl-ref.info,  Node: GSL BLAS Interface,  Next: BLAS Examples,  Up: BLAS Support
+
+13.1 GSL BLAS Interface
+=======================
+
+GSL provides dense vector and matrix objects, based on the relevant
+built-in types.  The library provides an interface to the BLAS
+operations which apply to these objects.  The interface to this
+functionality is given in the file `gsl_blas.h'.
+
+* Menu:
+
+* Level 1 GSL BLAS Interface::
+* Level 2 GSL BLAS Interface::
+* Level 3 GSL BLAS Interface::
+
+\1f
+File: gsl-ref.info,  Node: Level 1 GSL BLAS Interface,  Next: Level 2 GSL BLAS Interface,  Up: GSL BLAS Interface
+
+13.1.1 Level 1
+--------------
+
+ -- Function: int gsl_blas_sdsdot (float ALPHA, const gsl_vector_float
+          * X, const gsl_vector_float * Y, float * RESULT)
+     This function computes the sum \alpha + x^T y for the vectors X
+     and Y, returning the result in RESULT.
+
+ -- Function: int gsl_blas_sdot (const gsl_vector_float * X, const
+          gsl_vector_float * Y, float * RESULT)
+ -- Function: int gsl_blas_dsdot (const gsl_vector_float * X, const
+          gsl_vector_float * Y, double * RESULT)
+ -- Function: int gsl_blas_ddot (const gsl_vector * X, const gsl_vector
+          * Y, double * RESULT)
+     These functions compute the scalar product x^T y for the vectors X
+     and Y, returning the result in RESULT.
+
+ -- Function: int gsl_blas_cdotu (const gsl_vector_complex_float * X,
+          const gsl_vector_complex_float * Y, gsl_complex_float * DOTU)
+ -- Function: int gsl_blas_zdotu (const gsl_vector_complex * X, const
+          gsl_vector_complex * Y, gsl_complex * DOTU)
+     These functions compute the complex scalar product x^T y for the
+     vectors X and Y, returning the result in DOTU
+
+ -- Function: int gsl_blas_cdotc (const gsl_vector_complex_float * X,
+          const gsl_vector_complex_float * Y, gsl_complex_float * DOTC)
+ -- Function: int gsl_blas_zdotc (const gsl_vector_complex * X, const
+          gsl_vector_complex * Y, gsl_complex * DOTC)
+     These functions compute the complex conjugate scalar product x^H y
+     for the vectors X and Y, returning the result in DOTC
+
+ -- Function: float gsl_blas_snrm2 (const gsl_vector_float * X)
+ -- Function: double gsl_blas_dnrm2 (const gsl_vector * X)
+     These functions compute the Euclidean norm ||x||_2 = \sqrt {\sum
+     x_i^2} of the vector X.
+
+ -- Function: float gsl_blas_scnrm2 (const gsl_vector_complex_float * X)
+ -- Function: double gsl_blas_dznrm2 (const gsl_vector_complex * X)
+     These functions compute the Euclidean norm of the complex vector X,
+
+          ||x||_2 = \sqrt {\sum (\Re(x_i)^2 + \Im(x_i)^2)}.
+
+ -- Function: float gsl_blas_sasum (const gsl_vector_float * X)
+ -- Function: double gsl_blas_dasum (const gsl_vector * X)
+     These functions compute the absolute sum \sum |x_i| of the
+     elements of the vector X.
+
+ -- Function: float gsl_blas_scasum (const gsl_vector_complex_float * X)
+ -- Function: double gsl_blas_dzasum (const gsl_vector_complex * X)
+     These functions compute the sum of the magnitudes of the real and
+     imaginary parts of the complex vector X, \sum |\Re(x_i)| +
+     |\Im(x_i)|.
+
+ -- Function: CBLAS_INDEX_t gsl_blas_isamax (const gsl_vector_float * X)
+ -- Function: CBLAS_INDEX_t gsl_blas_idamax (const gsl_vector * X)
+ -- Function: CBLAS_INDEX_t gsl_blas_icamax (const
+          gsl_vector_complex_float * X)
+ -- Function: CBLAS_INDEX_t gsl_blas_izamax (const gsl_vector_complex *
+          X)
+     These functions return the index of the largest element of the
+     vector X. The largest element is determined by its absolute
+     magnitude for real vectors and by the sum of the magnitudes of the
+     real and imaginary parts |\Re(x_i)| + |\Im(x_i)| for complex
+     vectors.  If the largest value occurs several times then the index
+     of the first occurrence is returned.
+
+ -- Function: int gsl_blas_sswap (gsl_vector_float * X,
+          gsl_vector_float * Y)
+ -- Function: int gsl_blas_dswap (gsl_vector * X, gsl_vector * Y)
+ -- Function: int gsl_blas_cswap (gsl_vector_complex_float * X,
+          gsl_vector_complex_float * Y)
+ -- Function: int gsl_blas_zswap (gsl_vector_complex * X,
+          gsl_vector_complex * Y)
+     These functions exchange the elements of the vectors X and Y.
+
+ -- Function: int gsl_blas_scopy (const gsl_vector_float * X,
+          gsl_vector_float * Y)
+ -- Function: int gsl_blas_dcopy (const gsl_vector * X, gsl_vector * Y)
+ -- Function: int gsl_blas_ccopy (const gsl_vector_complex_float * X,
+          gsl_vector_complex_float * Y)
+ -- Function: int gsl_blas_zcopy (const gsl_vector_complex * X,
+          gsl_vector_complex * Y)
+     These functions copy the elements of the vector X into the vector
+     Y.
+
+ -- Function: int gsl_blas_saxpy (float ALPHA, const gsl_vector_float *
+          X, gsl_vector_float * Y)
+ -- Function: int gsl_blas_daxpy (double ALPHA, const gsl_vector * X,
+          gsl_vector * Y)
+ -- Function: int gsl_blas_caxpy (const gsl_complex_float ALPHA, const
+          gsl_vector_complex_float * X, gsl_vector_complex_float * Y)
+ -- Function: int gsl_blas_zaxpy (const gsl_complex ALPHA, const
+          gsl_vector_complex * X, gsl_vector_complex * Y)
+     These functions compute the sum y = \alpha x + y for the vectors X
+     and Y.
+
+ -- Function: void gsl_blas_sscal (float ALPHA, gsl_vector_float * X)
+ -- Function: void gsl_blas_dscal (double ALPHA, gsl_vector * X)
+ -- Function: void gsl_blas_cscal (const gsl_complex_float ALPHA,
+          gsl_vector_complex_float * X)
+ -- Function: void gsl_blas_zscal (const gsl_complex ALPHA,
+          gsl_vector_complex * X)
+ -- Function: void gsl_blas_csscal (float ALPHA,
+          gsl_vector_complex_float * X)
+ -- Function: void gsl_blas_zdscal (double ALPHA, gsl_vector_complex *
+          X)
+     These functions rescale the vector X by the multiplicative factor
+     ALPHA.
+
+ -- Function: int gsl_blas_srotg (float A[], float B[], float C[],
+          float S[])
+ -- Function: int gsl_blas_drotg (double A[], double B[], double C[],
+          double S[])
+     These functions compute a Givens rotation (c,s) which zeroes the
+     vector (a,b),
+
+          [  c  s ] [ a ] = [ r ]
+          [ -s  c ] [ b ]   [ 0 ]
+
+     The variables A and B are overwritten by the routine.
+
+ -- Function: int gsl_blas_srot (gsl_vector_float * X, gsl_vector_float
+          * Y, float C, float S)
+ -- Function: int gsl_blas_drot (gsl_vector * X, gsl_vector * Y, const
+          double C, const double S)
+     These functions apply a Givens rotation (x', y') = (c x + s y, -s
+     x + c y) to the vectors X, Y.
+
+ -- Function: int gsl_blas_srotmg (float D1[], float D2[], float B1[],
+          float B2, float P[])
+ -- Function: int gsl_blas_drotmg (double D1[], double D2[], double
+          B1[], double B2, double P[])
+     These functions compute a modified Givens transformation.  The
+     modified Givens transformation is defined in the original Level-1
+     BLAS specification, given in the references.
+
+ -- Function: int gsl_blas_srotm (gsl_vector_float * X,
+          gsl_vector_float * Y, const float P[])
+ -- Function: int gsl_blas_drotm (gsl_vector * X, gsl_vector * Y, const
+          double P[])
+     These functions apply a modified Givens transformation.
+
+\1f
+File: gsl-ref.info,  Node: Level 2 GSL BLAS Interface,  Next: Level 3 GSL BLAS Interface,  Prev: Level 1 GSL BLAS Interface,  Up: GSL BLAS Interface
+
+13.1.2 Level 2
+--------------
+
+ -- Function: int gsl_blas_sgemv (CBLAS_TRANSPOSE_t TRANSA, float
+          ALPHA, const gsl_matrix_float * A, const gsl_vector_float *
+          X, float BETA, gsl_vector_float * Y)
+ -- Function: int gsl_blas_dgemv (CBLAS_TRANSPOSE_t TRANSA, double
+          ALPHA, const gsl_matrix * A, const gsl_vector * X, double
+          BETA, gsl_vector * Y)
+ -- Function: int gsl_blas_cgemv (CBLAS_TRANSPOSE_t TRANSA, const
+          gsl_complex_float ALPHA, const gsl_matrix_complex_float * A,
+          const gsl_vector_complex_float * X, const gsl_complex_float
+          BETA, gsl_vector_complex_float * Y)
+ -- Function: int gsl_blas_zgemv (CBLAS_TRANSPOSE_t TRANSA, const
+          gsl_complex ALPHA, const gsl_matrix_complex * A, const
+          gsl_vector_complex * X, const gsl_complex BETA,
+          gsl_vector_complex * Y)
+     These functions compute the matrix-vector product and sum y =
+     \alpha op(A) x + \beta y, where op(A) = A, A^T, A^H for TRANSA =
+     `CblasNoTrans', `CblasTrans', `CblasConjTrans'.
+
+ -- Function: int gsl_blas_strmv (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANSA, CBLAS_DIAG_t DIAG, const gsl_matrix_float * A,
+          gsl_vector_float * X)
+ -- Function: int gsl_blas_dtrmv (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANSA, CBLAS_DIAG_t DIAG, const gsl_matrix * A, gsl_vector *
+          X)
+ -- Function: int gsl_blas_ctrmv (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANSA, CBLAS_DIAG_t DIAG, const gsl_matrix_complex_float *
+          A, gsl_vector_complex_float * X)
+ -- Function: int gsl_blas_ztrmv (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANSA, CBLAS_DIAG_t DIAG, const gsl_matrix_complex * A,
+          gsl_vector_complex * X)
+     These functions compute the matrix-vector product x = op(A) x for
+     the triangular matrix A, where op(A) = A, A^T, A^H for TRANSA =
+     `CblasNoTrans', `CblasTrans', `CblasConjTrans'.  When UPLO is
+     `CblasUpper' then the upper triangle of A is used, and when UPLO
+     is `CblasLower' then the lower triangle of A is used.  If DIAG is
+     `CblasNonUnit' then the diagonal of the matrix is used, but if
+     DIAG is `CblasUnit' then the diagonal elements of the matrix A are
+     taken as unity and are not referenced.
+
+ -- Function: int gsl_blas_strsv (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANSA, CBLAS_DIAG_t DIAG, const gsl_matrix_float * A,
+          gsl_vector_float * X)
+ -- Function: int gsl_blas_dtrsv (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANSA, CBLAS_DIAG_t DIAG, const gsl_matrix * A, gsl_vector *
+          X)
+ -- Function: int gsl_blas_ctrsv (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANSA, CBLAS_DIAG_t DIAG, const gsl_matrix_complex_float *
+          A, gsl_vector_complex_float * X)
+ -- Function: int gsl_blas_ztrsv (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANSA, CBLAS_DIAG_t DIAG, const gsl_matrix_complex * A,
+          gsl_vector_complex * X)
+     These functions compute inv(op(A)) x for X, where op(A) = A, A^T,
+     A^H for TRANSA = `CblasNoTrans', `CblasTrans', `CblasConjTrans'.
+     When UPLO is `CblasUpper' then the upper triangle of A is used,
+     and when UPLO is `CblasLower' then the lower triangle of A is
+     used.  If DIAG is `CblasNonUnit' then the diagonal of the matrix
+     is used, but if DIAG is `CblasUnit' then the diagonal elements of
+     the matrix A are taken as unity and are not referenced.
+
+ -- Function: int gsl_blas_ssymv (CBLAS_UPLO_t UPLO, float ALPHA, const
+          gsl_matrix_float * A, const gsl_vector_float * X, float BETA,
+          gsl_vector_float * Y)
+ -- Function: int gsl_blas_dsymv (CBLAS_UPLO_t UPLO, double ALPHA,
+          const gsl_matrix * A, const gsl_vector * X, double BETA,
+          gsl_vector * Y)
+     These functions compute the matrix-vector product and sum y =
+     \alpha A x + \beta y for the symmetric matrix A.  Since the matrix
+     A is symmetric only its upper half or lower half need to be
+     stored.  When UPLO is `CblasUpper' then the upper triangle and
+     diagonal of A are used, and when UPLO is `CblasLower' then the
+     lower triangle and diagonal of A are used.
+
+ -- Function: int gsl_blas_chemv (CBLAS_UPLO_t UPLO, const
+          gsl_complex_float ALPHA, const gsl_matrix_complex_float * A,
+          const gsl_vector_complex_float * X, const gsl_complex_float
+          BETA, gsl_vector_complex_float * Y)
+ -- Function: int gsl_blas_zhemv (CBLAS_UPLO_t UPLO, const gsl_complex
+          ALPHA, const gsl_matrix_complex * A, const gsl_vector_complex
+          * X, const gsl_complex BETA, gsl_vector_complex * Y)
+     These functions compute the matrix-vector product and sum y =
+     \alpha A x + \beta y for the hermitian matrix A.  Since the matrix
+     A is hermitian only its upper half or lower half need to be
+     stored.  When UPLO is `CblasUpper' then the upper triangle and
+     diagonal of A are used, and when UPLO is `CblasLower' then the
+     lower triangle and diagonal of A are used.  The imaginary elements
+     of the diagonal are automatically assumed to be zero and are not
+     referenced.
+
+ -- Function: int gsl_blas_sger (float ALPHA, const gsl_vector_float *
+          X, const gsl_vector_float * Y, gsl_matrix_float * A)
+ -- Function: int gsl_blas_dger (double ALPHA, const gsl_vector * X,
+          const gsl_vector * Y, gsl_matrix * A)
+ -- Function: int gsl_blas_cgeru (const gsl_complex_float ALPHA, const
+          gsl_vector_complex_float * X, const gsl_vector_complex_float
+          * Y, gsl_matrix_complex_float * A)
+ -- Function: int gsl_blas_zgeru (const gsl_complex ALPHA, const
+          gsl_vector_complex * X, const gsl_vector_complex * Y,
+          gsl_matrix_complex * A)
+     These functions compute the rank-1 update A = \alpha x y^T + A of
+     the matrix A.
+
+ -- Function: int gsl_blas_cgerc (const gsl_complex_float ALPHA, const
+          gsl_vector_complex_float * X, const gsl_vector_complex_float
+          * Y, gsl_matrix_complex_float * A)
+ -- Function: int gsl_blas_zgerc (const gsl_complex ALPHA, const
+          gsl_vector_complex * X, const gsl_vector_complex * Y,
+          gsl_matrix_complex * A)
+     These functions compute the conjugate rank-1 update A = \alpha x
+     y^H + A of the matrix A.
+
+ -- Function: int gsl_blas_ssyr (CBLAS_UPLO_t UPLO, float ALPHA, const
+          gsl_vector_float * X, gsl_matrix_float * A)
+ -- Function: int gsl_blas_dsyr (CBLAS_UPLO_t UPLO, double ALPHA, const
+          gsl_vector * X, gsl_matrix * A)
+     These functions compute the symmetric rank-1 update A = \alpha x
+     x^T + A of the symmetric matrix A.  Since the matrix A is
+     symmetric only its upper half or lower half need to be stored.
+     When UPLO is `CblasUpper' then the upper triangle and diagonal of
+     A are used, and when UPLO is `CblasLower' then the lower triangle
+     and diagonal of A are used.
+
+ -- Function: int gsl_blas_cher (CBLAS_UPLO_t UPLO, float ALPHA, const
+          gsl_vector_complex_float * X, gsl_matrix_complex_float * A)
+ -- Function: int gsl_blas_zher (CBLAS_UPLO_t UPLO, double ALPHA, const
+          gsl_vector_complex * X, gsl_matrix_complex * A)
+     These functions compute the hermitian rank-1 update A = \alpha x
+     x^H + A of the hermitian matrix A.  Since the matrix A is
+     hermitian only its upper half or lower half need to be stored.
+     When UPLO is `CblasUpper' then the upper triangle and diagonal of
+     A are used, and when UPLO is `CblasLower' then the lower triangle
+     and diagonal of A are used.  The imaginary elements of the
+     diagonal are automatically set to zero.
+
+ -- Function: int gsl_blas_ssyr2 (CBLAS_UPLO_t UPLO, float ALPHA, const
+          gsl_vector_float * X, const gsl_vector_float * Y,
+          gsl_matrix_float * A)
+ -- Function: int gsl_blas_dsyr2 (CBLAS_UPLO_t UPLO, double ALPHA,
+          const gsl_vector * X, const gsl_vector * Y, gsl_matrix * A)
+     These functions compute the symmetric rank-2 update A = \alpha x
+     y^T + \alpha y x^T + A of the symmetric matrix A.  Since the
+     matrix A is symmetric only its upper half or lower half need to be
+     stored.  When UPLO is `CblasUpper' then the upper triangle and
+     diagonal of A are used, and when UPLO is `CblasLower' then the
+     lower triangle and diagonal of A are used.
+
+ -- Function: int gsl_blas_cher2 (CBLAS_UPLO_t UPLO, const
+          gsl_complex_float ALPHA, const gsl_vector_complex_float * X,
+          const gsl_vector_complex_float * Y, gsl_matrix_complex_float
+          * A)
+ -- Function: int gsl_blas_zher2 (CBLAS_UPLO_t UPLO, const gsl_complex
+          ALPHA, const gsl_vector_complex * X, const gsl_vector_complex
+          * Y, gsl_matrix_complex * A)
+     These functions compute the hermitian rank-2 update A = \alpha x
+     y^H + \alpha^* y x^H + A of the hermitian matrix A.  Since the
+     matrix A is hermitian only its upper half or lower half need to be
+     stored.  When UPLO is `CblasUpper' then the upper triangle and
+     diagonal of A are used, and when UPLO is `CblasLower' then the
+     lower triangle and diagonal of A are used.  The imaginary elements
+     of the diagonal are automatically set to zero.
+
+\1f
+File: gsl-ref.info,  Node: Level 3 GSL BLAS Interface,  Prev: Level 2 GSL BLAS Interface,  Up: GSL BLAS Interface
+
+13.1.3 Level 3
+--------------
+
+ -- Function: int gsl_blas_sgemm (CBLAS_TRANSPOSE_t TRANSA,
+          CBLAS_TRANSPOSE_t TRANSB, float ALPHA, const gsl_matrix_float
+          * A, const gsl_matrix_float * B, float BETA, gsl_matrix_float
+          * C)
+ -- Function: int gsl_blas_dgemm (CBLAS_TRANSPOSE_t TRANSA,
+          CBLAS_TRANSPOSE_t TRANSB, double ALPHA, const gsl_matrix * A,
+          const gsl_matrix * B, double BETA, gsl_matrix * C)
+ -- Function: int gsl_blas_cgemm (CBLAS_TRANSPOSE_t TRANSA,
+          CBLAS_TRANSPOSE_t TRANSB, const gsl_complex_float ALPHA,
+          const gsl_matrix_complex_float * A, const
+          gsl_matrix_complex_float * B, const gsl_complex_float BETA,
+          gsl_matrix_complex_float * C)
+ -- Function: int gsl_blas_zgemm (CBLAS_TRANSPOSE_t TRANSA,
+          CBLAS_TRANSPOSE_t TRANSB, const gsl_complex ALPHA, const
+          gsl_matrix_complex * A, const gsl_matrix_complex * B, const
+          gsl_complex BETA, gsl_matrix_complex * C)
+     These functions compute the matrix-matrix product and sum C =
+     \alpha op(A) op(B) + \beta C where op(A) = A, A^T, A^H for TRANSA
+     = `CblasNoTrans', `CblasTrans', `CblasConjTrans' and similarly for
+     the parameter TRANSB.
+
+ -- Function: int gsl_blas_ssymm (CBLAS_SIDE_t SIDE, CBLAS_UPLO_t UPLO,
+          float ALPHA, const gsl_matrix_float * A, const
+          gsl_matrix_float * B, float BETA, gsl_matrix_float * C)
+ -- Function: int gsl_blas_dsymm (CBLAS_SIDE_t SIDE, CBLAS_UPLO_t UPLO,
+          double ALPHA, const gsl_matrix * A, const gsl_matrix * B,
+          double BETA, gsl_matrix * C)
+ -- Function: int gsl_blas_csymm (CBLAS_SIDE_t SIDE, CBLAS_UPLO_t UPLO,
+          const gsl_complex_float ALPHA, const gsl_matrix_complex_float
+          * A, const gsl_matrix_complex_float * B, const
+          gsl_complex_float BETA, gsl_matrix_complex_float * C)
+ -- Function: int gsl_blas_zsymm (CBLAS_SIDE_t SIDE, CBLAS_UPLO_t UPLO,
+          const gsl_complex ALPHA, const gsl_matrix_complex * A, const
+          gsl_matrix_complex * B, const gsl_complex BETA,
+          gsl_matrix_complex * C)
+     These functions compute the matrix-matrix product and sum C =
+     \alpha A B + \beta C for SIDE is `CblasLeft' and C = \alpha B A +
+     \beta C for SIDE is `CblasRight', where the matrix A is symmetric.
+     When UPLO is `CblasUpper' then the upper triangle and diagonal of
+     A are used, and when UPLO is `CblasLower' then the lower triangle
+     and diagonal of A are used.
+
+ -- Function: int gsl_blas_chemm (CBLAS_SIDE_t SIDE, CBLAS_UPLO_t UPLO,
+          const gsl_complex_float ALPHA, const gsl_matrix_complex_float
+          * A, const gsl_matrix_complex_float * B, const
+          gsl_complex_float BETA, gsl_matrix_complex_float * C)
+ -- Function: int gsl_blas_zhemm (CBLAS_SIDE_t SIDE, CBLAS_UPLO_t UPLO,
+          const gsl_complex ALPHA, const gsl_matrix_complex * A, const
+          gsl_matrix_complex * B, const gsl_complex BETA,
+          gsl_matrix_complex * C)
+     These functions compute the matrix-matrix product and sum C =
+     \alpha A B + \beta C for SIDE is `CblasLeft' and C = \alpha B A +
+     \beta C for SIDE is `CblasRight', where the matrix A is hermitian.
+     When UPLO is `CblasUpper' then the upper triangle and diagonal of
+     A are used, and when UPLO is `CblasLower' then the lower triangle
+     and diagonal of A are used.  The imaginary elements of the
+     diagonal are automatically set to zero.
+
+ -- Function: int gsl_blas_strmm (CBLAS_SIDE_t SIDE, CBLAS_UPLO_t UPLO,
+          CBLAS_TRANSPOSE_t TRANSA, CBLAS_DIAG_t DIAG, float ALPHA,
+          const gsl_matrix_float * A, gsl_matrix_float * B)
+ -- Function: int gsl_blas_dtrmm (CBLAS_SIDE_t SIDE, CBLAS_UPLO_t UPLO,
+          CBLAS_TRANSPOSE_t TRANSA, CBLAS_DIAG_t DIAG, double ALPHA,
+          const gsl_matrix * A, gsl_matrix * B)
+ -- Function: int gsl_blas_ctrmm (CBLAS_SIDE_t SIDE, CBLAS_UPLO_t UPLO,
+          CBLAS_TRANSPOSE_t TRANSA, CBLAS_DIAG_t DIAG, const
+          gsl_complex_float ALPHA, const gsl_matrix_complex_float * A,
+          gsl_matrix_complex_float * B)
+ -- Function: int gsl_blas_ztrmm (CBLAS_SIDE_t SIDE, CBLAS_UPLO_t UPLO,
+          CBLAS_TRANSPOSE_t TRANSA, CBLAS_DIAG_t DIAG, const
+          gsl_complex ALPHA, const gsl_matrix_complex * A,
+          gsl_matrix_complex * B)
+     These functions compute the matrix-matrix product B = \alpha op(A)
+     B for SIDE is `CblasLeft' and B = \alpha B op(A) for SIDE is
+     `CblasRight'.  The matrix A is triangular and op(A) = A, A^T, A^H
+     for TRANSA = `CblasNoTrans', `CblasTrans', `CblasConjTrans'. When
+     UPLO is `CblasUpper' then the upper triangle of A is used, and
+     when UPLO is `CblasLower' then the lower triangle of A is used.
+     If DIAG is `CblasNonUnit' then the diagonal of A is used, but if
+     DIAG is `CblasUnit' then the diagonal elements of the matrix A are
+     taken as unity and are not referenced.
+
+ -- Function: int gsl_blas_strsm (CBLAS_SIDE_t SIDE, CBLAS_UPLO_t UPLO,
+          CBLAS_TRANSPOSE_t TRANSA, CBLAS_DIAG_t DIAG, float ALPHA,
+          const gsl_matrix_float * A, gsl_matrix_float * B)
+ -- Function: int gsl_blas_dtrsm (CBLAS_SIDE_t SIDE, CBLAS_UPLO_t UPLO,
+          CBLAS_TRANSPOSE_t TRANSA, CBLAS_DIAG_t DIAG, double ALPHA,
+          const gsl_matrix * A, gsl_matrix * B)
+ -- Function: int gsl_blas_ctrsm (CBLAS_SIDE_t SIDE, CBLAS_UPLO_t UPLO,
+          CBLAS_TRANSPOSE_t TRANSA, CBLAS_DIAG_t DIAG, const
+          gsl_complex_float ALPHA, const gsl_matrix_complex_float * A,
+          gsl_matrix_complex_float * B)
+ -- Function: int gsl_blas_ztrsm (CBLAS_SIDE_t SIDE, CBLAS_UPLO_t UPLO,
+          CBLAS_TRANSPOSE_t TRANSA, CBLAS_DIAG_t DIAG, const
+          gsl_complex ALPHA, const gsl_matrix_complex * A,
+          gsl_matrix_complex * B)
+     These functions compute the inverse-matrix matrix product B =
+     \alpha op(inv(A))B for SIDE is `CblasLeft' and B = \alpha B
+     op(inv(A)) for SIDE is `CblasRight'.  The matrix A is triangular
+     and op(A) = A, A^T, A^H for TRANSA = `CblasNoTrans', `CblasTrans',
+     `CblasConjTrans'. When UPLO is `CblasUpper' then the upper
+     triangle of A is used, and when UPLO is `CblasLower' then the
+     lower triangle of A is used.  If DIAG is `CblasNonUnit' then the
+     diagonal of A is used, but if DIAG is `CblasUnit' then the
+     diagonal elements of the matrix A are taken as unity and are not
+     referenced.
+
+ -- Function: int gsl_blas_ssyrk (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANS, float ALPHA, const gsl_matrix_float * A, float BETA,
+          gsl_matrix_float * C)
+ -- Function: int gsl_blas_dsyrk (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANS, double ALPHA, const gsl_matrix * A, double BETA,
+          gsl_matrix * C)
+ -- Function: int gsl_blas_csyrk (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANS, const gsl_complex_float ALPHA, const
+          gsl_matrix_complex_float * A, const gsl_complex_float BETA,
+          gsl_matrix_complex_float * C)
+ -- Function: int gsl_blas_zsyrk (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANS, const gsl_complex ALPHA, const gsl_matrix_complex * A,
+          const gsl_complex BETA, gsl_matrix_complex * C)
+     These functions compute a rank-k update of the symmetric matrix C,
+     C = \alpha A A^T + \beta C when TRANS is `CblasNoTrans' and C =
+     \alpha A^T A + \beta C when TRANS is `CblasTrans'.  Since the
+     matrix C is symmetric only its upper half or lower half need to be
+     stored.  When UPLO is `CblasUpper' then the upper triangle and
+     diagonal of C are used, and when UPLO is `CblasLower' then the
+     lower triangle and diagonal of C are used.
+
+ -- Function: int gsl_blas_cherk (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANS, float ALPHA, const gsl_matrix_complex_float * A, float
+          BETA, gsl_matrix_complex_float * C)
+ -- Function: int gsl_blas_zherk (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANS, double ALPHA, const gsl_matrix_complex * A, double
+          BETA, gsl_matrix_complex * C)
+     These functions compute a rank-k update of the hermitian matrix C,
+     C = \alpha A A^H + \beta C when TRANS is `CblasNoTrans' and C =
+     \alpha A^H A + \beta C when TRANS is `CblasConjTrans'.  Since the
+     matrix C is hermitian only its upper half or lower half need to be
+     stored.  When UPLO is `CblasUpper' then the upper triangle and
+     diagonal of C are used, and when UPLO is `CblasLower' then the
+     lower triangle and diagonal of C are used.  The imaginary elements
+     of the diagonal are automatically set to zero.
+
+ -- Function: int gsl_blas_ssyr2k (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANS, float ALPHA, const gsl_matrix_float * A, const
+          gsl_matrix_float * B, float BETA, gsl_matrix_float * C)
+ -- Function: int gsl_blas_dsyr2k (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANS, double ALPHA, const gsl_matrix * A, const gsl_matrix *
+          B, double BETA, gsl_matrix * C)
+ -- Function: int gsl_blas_csyr2k (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANS, const gsl_complex_float ALPHA, const
+          gsl_matrix_complex_float * A, const gsl_matrix_complex_float
+          * B, const gsl_complex_float BETA, gsl_matrix_complex_float *
+          C)
+ -- Function: int gsl_blas_zsyr2k (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANS, const gsl_complex ALPHA, const gsl_matrix_complex * A,
+          const gsl_matrix_complex * B, const gsl_complex BETA,
+          gsl_matrix_complex * C)
+     These functions compute a rank-2k update of the symmetric matrix C,
+     C = \alpha A B^T + \alpha B A^T + \beta C when TRANS is
+     `CblasNoTrans' and C = \alpha A^T B + \alpha B^T A + \beta C when
+     TRANS is `CblasTrans'.  Since the matrix C is symmetric only its
+     upper half or lower half need to be stored.  When UPLO is
+     `CblasUpper' then the upper triangle and diagonal of C are used,
+     and when UPLO is `CblasLower' then the lower triangle and diagonal
+     of C are used.
+
+ -- Function: int gsl_blas_cher2k (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANS, const gsl_complex_float ALPHA, const
+          gsl_matrix_complex_float * A, const gsl_matrix_complex_float
+          * B, float BETA, gsl_matrix_complex_float * C)
+ -- Function: int gsl_blas_zher2k (CBLAS_UPLO_t UPLO, CBLAS_TRANSPOSE_t
+          TRANS, const gsl_complex ALPHA, const gsl_matrix_complex * A,
+          const gsl_matrix_complex * B, double BETA, gsl_matrix_complex
+          * C)
+     These functions compute a rank-2k update of the hermitian matrix C,
+     C = \alpha A B^H + \alpha^* B A^H + \beta C when TRANS is
+     `CblasNoTrans' and C = \alpha A^H B + \alpha^* B^H A + \beta C when
+     TRANS is `CblasConjTrans'.  Since the matrix C is hermitian only
+     its upper half or lower half need to be stored.  When UPLO is
+     `CblasUpper' then the upper triangle and diagonal of C are used,
+     and when UPLO is `CblasLower' then the lower triangle and diagonal
+     of C are used.  The imaginary elements of the diagonal are
+     automatically set to zero.
+
+\1f
+File: gsl-ref.info,  Node: BLAS Examples,  Next: BLAS References and Further Reading,  Prev: GSL BLAS Interface,  Up: BLAS Support
+
+13.2 Examples
+=============
+
+The following program computes the product of two matrices using the
+Level-3 BLAS function DGEMM,
+
+     [ 0.11 0.12 0.13 ]  [ 1011 1012 ]     [ 367.76 368.12 ]
+     [ 0.21 0.22 0.23 ]  [ 1021 1022 ]  =  [ 674.06 674.72 ]
+                         [ 1031 1032 ]
+
+The matrices are stored in row major order, according to the C
+convention for arrays.
+
+     #include <stdio.h>
+     #include <gsl/gsl_blas.h>
+
+     int
+     main (void)
+     {
+       double a[] = { 0.11, 0.12, 0.13,
+                      0.21, 0.22, 0.23 };
+
+       double b[] = { 1011, 1012,
+                      1021, 1022,
+                      1031, 1032 };
+
+       double c[] = { 0.00, 0.00,
+                      0.00, 0.00 };
+
+       gsl_matrix_view A = gsl_matrix_view_array(a, 2, 3);
+       gsl_matrix_view B = gsl_matrix_view_array(b, 3, 2);
+       gsl_matrix_view C = gsl_matrix_view_array(c, 2, 2);
+
+       /* Compute C = A B */
+
+       gsl_blas_dgemm (CblasNoTrans, CblasNoTrans,
+                       1.0, &A.matrix, &B.matrix,
+                       0.0, &C.matrix);
+
+       printf ("[ %g, %g\n", c[0], c[1]);
+       printf ("  %g, %g ]\n", c[2], c[3]);
+
+       return 0;
+     }
+
+Here is the output from the program,
+
+     $ ./a.out
+     [ 367.76, 368.12
+       674.06, 674.72 ]
+
+\1f
+File: gsl-ref.info,  Node: BLAS References and Further Reading,  Prev: BLAS Examples,  Up: BLAS Support
+
+13.3 References and Further Reading
+===================================
+
+Information on the BLAS standards, including both the legacy and
+updated interface standards, is available online from the BLAS Homepage
+and BLAS Technical Forum web-site.
+
+     `BLAS Homepage'
+     `http://www.netlib.org/blas/'
+
+     `BLAS Technical Forum'
+     `http://www.netlib.org/blas/blast-forum/'
+
+The following papers contain the specifications for Level 1, Level 2 and
+Level 3 BLAS.
+
+     C. Lawson, R. Hanson, D. Kincaid, F. Krogh, "Basic Linear Algebra
+     Subprograms for Fortran Usage", `ACM Transactions on Mathematical
+     Software', Vol. 5 (1979), Pages 308-325.
+
+     J.J. Dongarra, J. DuCroz, S. Hammarling, R. Hanson, "An Extended
+     Set of Fortran Basic Linear Algebra Subprograms", `ACM
+     Transactions on Mathematical Software', Vol. 14, No. 1 (1988),
+     Pages 1-32.
+
+     J.J. Dongarra, I. Duff, J. DuCroz, S. Hammarling, "A Set of Level
+     3 Basic Linear Algebra Subprograms", `ACM Transactions on
+     Mathematical Software', Vol. 16 (1990), Pages 1-28.
+
+Postscript versions of the latter two papers are available from
+`http://www.netlib.org/blas/'. A CBLAS wrapper for Fortran BLAS
+libraries is available from the same location.
+
+\1f
+File: gsl-ref.info,  Node: Linear Algebra,  Next: Eigensystems,  Prev: BLAS Support,  Up: Top
+
+14 Linear Algebra
+*****************
+
+This chapter describes functions for solving linear systems.  The
+library provides linear algebra operations which operate directly on
+the `gsl_vector' and `gsl_matrix' objects.  These routines use the
+standard algorithms from Golub & Van Loan's `Matrix Computations' with
+Level-1 and Level-2 BLAS calls for efficiency.
+
+   The functions described in this chapter are declared in the header
+file `gsl_linalg.h'.
+
+* Menu:
+
+* LU Decomposition::
+* QR Decomposition::
+* QR Decomposition with Column Pivoting::
+* Singular Value Decomposition::
+* Cholesky Decomposition::
+* Tridiagonal Decomposition of Real Symmetric Matrices::
+* Tridiagonal Decomposition of Hermitian Matrices::
+* Hessenberg Decomposition of Real Matrices::
+* Hessenberg-Triangular Decomposition of Real Matrices::
+* Bidiagonalization::
+* Householder Transformations::
+* Householder solver for linear systems::
+* Tridiagonal Systems::
+* Balancing::
+* Linear Algebra Examples::
+* Linear Algebra References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: LU Decomposition,  Next: QR Decomposition,  Up: Linear Algebra
+
+14.1 LU Decomposition
+=====================
+
+A general square matrix A has an LU decomposition into upper and lower
+triangular matrices,
+
+     P A = L U
+
+where P is a permutation matrix, L is unit lower triangular matrix and
+U is upper triangular matrix. For square matrices this decomposition
+can be used to convert the linear system A x = b into a pair of
+triangular systems (L y = P b, U x = y), which can be solved by forward
+and back-substitution.  Note that the LU decomposition is valid for
+singular matrices.
+
+ -- Function: int gsl_linalg_LU_decomp (gsl_matrix * A, gsl_permutation
+          * P, int * SIGNUM)
+ -- Function: int gsl_linalg_complex_LU_decomp (gsl_matrix_complex * A,
+          gsl_permutation * P, int * SIGNUM)
+     These functions factorize the square matrix A into the LU
+     decomposition PA = LU.  On output the diagonal and upper
+     triangular part of the input matrix A contain the matrix U. The
+     lower triangular part of the input matrix (excluding the diagonal)
+     contains L.  The diagonal elements of L are unity, and are not
+     stored.
+
+     The permutation matrix P is encoded in the permutation P. The j-th
+     column of the matrix P is given by the k-th column of the identity
+     matrix, where k = p_j the j-th element of the permutation vector.
+     The sign of the permutation is given by SIGNUM. It has the value
+     (-1)^n, where n is the number of interchanges in the permutation.
+
+     The algorithm used in the decomposition is Gaussian Elimination
+     with partial pivoting (Golub & Van Loan, `Matrix Computations',
+     Algorithm 3.4.1).
+
+ -- Function: int gsl_linalg_LU_solve (const gsl_matrix * LU, const
+          gsl_permutation * P, const gsl_vector * B, gsl_vector * X)
+ -- Function: int gsl_linalg_complex_LU_solve (const gsl_matrix_complex
+          * LU, const gsl_permutation * P, const gsl_vector_complex *
+          B, gsl_vector_complex * X)
+     These functions solve the square system A x = b using the LU
+     decomposition of A into (LU, P) given by `gsl_linalg_LU_decomp' or
+     `gsl_linalg_complex_LU_decomp' as input.
+
+ -- Function: int gsl_linalg_LU_svx (const gsl_matrix * LU, const
+          gsl_permutation * P, gsl_vector * X)
+ -- Function: int gsl_linalg_complex_LU_svx (const gsl_matrix_complex *
+          LU, const gsl_permutation * P, gsl_vector_complex * X)
+     These functions solve the square system A x = b in-place using the
+     precomputed LU decomposition of A into (LU,P). On input X should
+     contain the right-hand side b, which is replaced by the solution
+     on output.
+
+ -- Function: int gsl_linalg_LU_refine (const gsl_matrix * A, const
+          gsl_matrix * LU, const gsl_permutation * P, const gsl_vector
+          * B, gsl_vector * X, gsl_vector * RESIDUAL)
+ -- Function: int gsl_linalg_complex_LU_refine (const
+          gsl_matrix_complex * A, const gsl_matrix_complex * LU, const
+          gsl_permutation * P, const gsl_vector_complex * B,
+          gsl_vector_complex * X, gsl_vector_complex * RESIDUAL)
+     These functions apply an iterative improvement to X, the solution
+     of A x = b, from the precomputed LU decomposition of A into
+     (LU,P). The initial residual r = A x - b is also computed and
+     stored in RESIDUAL.
+
+ -- Function: int gsl_linalg_LU_invert (const gsl_matrix * LU, const
+          gsl_permutation * P, gsl_matrix * INVERSE)
+ -- Function: int gsl_linalg_complex_LU_invert (const
+          gsl_matrix_complex * LU, const gsl_permutation * P,
+          gsl_matrix_complex * INVERSE)
+     These functions compute the inverse of a matrix A from its LU
+     decomposition (LU,P), storing the result in the matrix INVERSE.
+     The inverse is computed by solving the system A x = b for each
+     column of the identity matrix.  It is preferable to avoid direct
+     use of the inverse whenever possible, as the linear solver
+     functions can obtain the same result more efficiently and reliably
+     (consult any introductory textbook on numerical linear algebra for
+     details).
+
+ -- Function: double gsl_linalg_LU_det (gsl_matrix * LU, int SIGNUM)
+ -- Function: gsl_complex gsl_linalg_complex_LU_det (gsl_matrix_complex
+          * LU, int SIGNUM)
+     These functions compute the determinant of a matrix A from its LU
+     decomposition, LU. The determinant is computed as the product of
+     the diagonal elements of U and the sign of the row permutation
+     SIGNUM.
+
+ -- Function: double gsl_linalg_LU_lndet (gsl_matrix * LU)
+ -- Function: double gsl_linalg_complex_LU_lndet (gsl_matrix_complex *
+          LU)
+     These functions compute the logarithm of the absolute value of the
+     determinant of a matrix A, \ln|\det(A)|, from its LU
+     decomposition, LU.  This function may be useful if the direct
+     computation of the determinant would overflow or underflow.
+
+ -- Function: int gsl_linalg_LU_sgndet (gsl_matrix * LU, int SIGNUM)
+ -- Function: gsl_complex gsl_linalg_complex_LU_sgndet
+          (gsl_matrix_complex * LU, int SIGNUM)
+     These functions compute the sign or phase factor of the
+     determinant of a matrix A, \det(A)/|\det(A)|, from its LU
+     decomposition, LU.
+
+\1f
+File: gsl-ref.info,  Node: QR Decomposition,  Next: QR Decomposition with Column Pivoting,  Prev: LU Decomposition,  Up: Linear Algebra
+
+14.2 QR Decomposition
+=====================
+
+A general rectangular M-by-N matrix A has a QR decomposition into the
+product of an orthogonal M-by-M square matrix Q (where Q^T Q = I) and
+an M-by-N right-triangular matrix R,
+
+     A = Q R
+
+This decomposition can be used to convert the linear system A x = b
+into the triangular system R x = Q^T b, which can be solved by
+back-substitution. Another use of the QR decomposition is to compute an
+orthonormal basis for a set of vectors. The first N columns of Q form
+an orthonormal basis for the range of A, ran(A), when A has full column
+rank.
+
+ -- Function: int gsl_linalg_QR_decomp (gsl_matrix * A, gsl_vector *
+          TAU)
+     This function factorizes the M-by-N matrix A into the QR
+     decomposition A = Q R.  On output the diagonal and upper
+     triangular part of the input matrix contain the matrix R. The
+     vector TAU and the columns of the lower triangular part of the
+     matrix A contain the Householder coefficients and Householder
+     vectors which encode the orthogonal matrix Q.  The vector TAU must
+     be of length k=\min(M,N). The matrix Q is related to these
+     components by, Q = Q_k ... Q_2 Q_1 where Q_i = I - \tau_i v_i
+     v_i^T and v_i is the Householder vector v_i =
+     (0,...,1,A(i+1,i),A(i+2,i),...,A(m,i)). This is the same storage
+     scheme as used by LAPACK.
+
+     The algorithm used to perform the decomposition is Householder QR
+     (Golub & Van Loan, `Matrix Computations', Algorithm 5.2.1).
+
+ -- Function: int gsl_linalg_QR_solve (const gsl_matrix * QR, const
+          gsl_vector * TAU, const gsl_vector * B, gsl_vector * X)
+     This function solves the square system A x = b using the QR
+     decomposition of A held in (QR, TAU) which must have been computed
+     previously with `gsl_linalg_QR_decomp'.  The least-squares
+     solution for rectangular systems can be found using
+     `gsl_linalg_QR_lssolve'.
+
+ -- Function: int gsl_linalg_QR_svx (const gsl_matrix * QR, const
+          gsl_vector * TAU, gsl_vector * X)
+     This function solves the square system A x = b in-place using the
+     QR decomposition of A held in (QR,TAU) which must have been
+     computed previously by `gsl_linalg_QR_decomp'.  On input X should
+     contain the right-hand side b, which is replaced by the solution
+     on output.
+
+ -- Function: int gsl_linalg_QR_lssolve (const gsl_matrix * QR, const
+          gsl_vector * TAU, const gsl_vector * B, gsl_vector * X,
+          gsl_vector * RESIDUAL)
+     This function finds the least squares solution to the
+     overdetermined system A x = b where the matrix A has more rows than
+     columns.  The least squares solution minimizes the Euclidean norm
+     of the residual, ||Ax - b||.The routine requires as input the QR
+     decomposition of A into (QR, TAU) given by `gsl_linalg_QR_decomp'.
+     The solution is returned in X.  The residual is computed as a
+     by-product and stored in RESIDUAL.
+
+ -- Function: int gsl_linalg_QR_QTvec (const gsl_matrix * QR, const
+          gsl_vector * TAU, gsl_vector * V)
+     This function applies the matrix Q^T encoded in the decomposition
+     (QR,TAU) to the vector V, storing the result Q^T v in V.  The
+     matrix multiplication is carried out directly using the encoding
+     of the Householder vectors without needing to form the full matrix
+     Q^T.
+
+ -- Function: int gsl_linalg_QR_Qvec (const gsl_matrix * QR, const
+          gsl_vector * TAU, gsl_vector * V)
+     This function applies the matrix Q encoded in the decomposition
+     (QR,TAU) to the vector V, storing the result Q v in V.  The matrix
+     multiplication is carried out directly using the encoding of the
+     Householder vectors without needing to form the full matrix Q.
+
+ -- Function: int gsl_linalg_QR_QTmat (const gsl_matrix * QR, const
+          gsl_vector * TAU, gsl_matrix * A)
+     This function applies the matrix Q^T encoded in the decomposition
+     (QR,TAU) to the matrix A, storing the result Q^T A in A.  The
+     matrix multiplication is carried out directly using the encoding
+     of the Householder vectors without needing to form the full matrix
+     Q^T.
+
+ -- Function: int gsl_linalg_QR_Rsolve (const gsl_matrix * QR, const
+          gsl_vector * B, gsl_vector * X)
+     This function solves the triangular system R x = b for X. It may
+     be useful if the product b' = Q^T b has already been computed
+     using `gsl_linalg_QR_QTvec'.
+
+ -- Function: int gsl_linalg_QR_Rsvx (const gsl_matrix * QR, gsl_vector
+          * X)
+     This function solves the triangular system R x = b for X in-place.
+     On input X should contain the right-hand side b and is replaced by
+     the solution on output. This function may be useful if the product
+     b' = Q^T b has already been computed using `gsl_linalg_QR_QTvec'.
+
+ -- Function: int gsl_linalg_QR_unpack (const gsl_matrix * QR, const
+          gsl_vector * TAU, gsl_matrix * Q, gsl_matrix * R)
+     This function unpacks the encoded QR decomposition (QR,TAU) into
+     the matrices Q and R, where Q is M-by-M and R is M-by-N.
+
+ -- Function: int gsl_linalg_QR_QRsolve (gsl_matrix * Q, gsl_matrix *
+          R, const gsl_vector * B, gsl_vector * X)
+     This function solves the system R x = Q^T b for X. It can be used
+     when the QR decomposition of a matrix is available in unpacked
+     form as (Q, R).
+
+ -- Function: int gsl_linalg_QR_update (gsl_matrix * Q, gsl_matrix * R,
+          gsl_vector * W, const gsl_vector * V)
+     This function performs a rank-1 update w v^T of the QR
+     decomposition (Q, R). The update is given by Q'R' = Q (R + w v^T)
+     where the output matrices Q' and R' are also orthogonal and right
+     triangular. Note that W is destroyed by the update.
+
+ -- Function: int gsl_linalg_R_solve (const gsl_matrix * R, const
+          gsl_vector * B, gsl_vector * X)
+     This function solves the triangular system R x = b for the N-by-N
+     matrix R.
+
+ -- Function: int gsl_linalg_R_svx (const gsl_matrix * R, gsl_vector *
+          X)
+     This function solves the triangular system R x = b in-place. On
+     input X should contain the right-hand side b, which is replaced by
+     the solution on output.
+
+\1f
+File: gsl-ref.info,  Node: QR Decomposition with Column Pivoting,  Next: Singular Value Decomposition,  Prev: QR Decomposition,  Up: Linear Algebra
+
+14.3 QR Decomposition with Column Pivoting
+==========================================
+
+The QR decomposition can be extended to the rank deficient case by
+introducing a column permutation P,
+
+     A P = Q R
+
+The first r columns of Q form an orthonormal basis for the range of A
+for a matrix with column rank r.  This decomposition can also be used
+to convert the linear system A x = b into the triangular system R y =
+Q^T b, x = P y, which can be solved by back-substitution and
+permutation.  We denote the QR decomposition with column pivoting by
+QRP^T since A = Q R P^T.
+
+ -- Function: int gsl_linalg_QRPT_decomp (gsl_matrix * A, gsl_vector *
+          TAU, gsl_permutation * P, int * SIGNUM, gsl_vector * NORM)
+     This function factorizes the M-by-N matrix A into the QRP^T
+     decomposition A = Q R P^T.  On output the diagonal and upper
+     triangular part of the input matrix contain the matrix R. The
+     permutation matrix P is stored in the permutation P.  The sign of
+     the permutation is given by SIGNUM. It has the value (-1)^n, where
+     n is the number of interchanges in the permutation. The vector TAU
+     and the columns of the lower triangular part of the matrix A
+     contain the Householder coefficients and vectors which encode the
+     orthogonal matrix Q.  The vector TAU must be of length
+     k=\min(M,N). The matrix Q is related to these components by, Q =
+     Q_k ... Q_2 Q_1 where Q_i = I - \tau_i v_i v_i^T and v_i is the
+     Householder vector v_i = (0,...,1,A(i+1,i),A(i+2,i),...,A(m,i)).
+     This is the same storage scheme as used by LAPACK.  The vector
+     NORM is a workspace of length N used for column pivoting.
+
+     The algorithm used to perform the decomposition is Householder QR
+     with column pivoting (Golub & Van Loan, `Matrix Computations',
+     Algorithm 5.4.1).
+
+ -- Function: int gsl_linalg_QRPT_decomp2 (const gsl_matrix * A,
+          gsl_matrix * Q, gsl_matrix * R, gsl_vector * TAU,
+          gsl_permutation * P, int * SIGNUM, gsl_vector * NORM)
+     This function factorizes the matrix A into the decomposition A = Q
+     R P^T without modifying A itself and storing the output in the
+     separate matrices Q and R.
+
+ -- Function: int gsl_linalg_QRPT_solve (const gsl_matrix * QR, const
+          gsl_vector * TAU, const gsl_permutation * P, const gsl_vector
+          * B, gsl_vector * X)
+     This function solves the square system A x = b using the QRP^T
+     decomposition of A held in (QR, TAU, P) which must have been
+     computed previously by `gsl_linalg_QRPT_decomp'.
+
+ -- Function: int gsl_linalg_QRPT_svx (const gsl_matrix * QR, const
+          gsl_vector * TAU, const gsl_permutation * P, gsl_vector * X)
+     This function solves the square system A x = b in-place using the
+     QRP^T decomposition of A held in (QR,TAU,P). On input X should
+     contain the right-hand side b, which is replaced by the solution
+     on output.
+
+ -- Function: int gsl_linalg_QRPT_QRsolve (const gsl_matrix * Q, const
+          gsl_matrix * R, const gsl_permutation * P, const gsl_vector *
+          B, gsl_vector * X)
+     This function solves the square system R P^T x = Q^T b for X. It
+     can be used when the QR decomposition of a matrix is available in
+     unpacked form as (Q, R).
+
+ -- Function: int gsl_linalg_QRPT_update (gsl_matrix * Q, gsl_matrix *
+          R, const gsl_permutation * P, gsl_vector * W, const
+          gsl_vector * V)
+     This function performs a rank-1 update w v^T of the QRP^T
+     decomposition (Q, R, P). The update is given by Q'R' = Q (R + w
+     v^T P) where the output matrices Q' and R' are also orthogonal and
+     right triangular. Note that W is destroyed by the update. The
+     permutation P is not changed.
+
+ -- Function: int gsl_linalg_QRPT_Rsolve (const gsl_matrix * QR, const
+          gsl_permutation * P, const gsl_vector * B, gsl_vector * X)
+     This function solves the triangular system R P^T x = b for the
+     N-by-N matrix R contained in QR.
+
+ -- Function: int gsl_linalg_QRPT_Rsvx (const gsl_matrix * QR, const
+          gsl_permutation * P, gsl_vector * X)
+     This function solves the triangular system R P^T x = b in-place
+     for the N-by-N matrix R contained in QR. On input X should contain
+     the right-hand side b, which is replaced by the solution on output.
+
+\1f
+File: gsl-ref.info,  Node: Singular Value Decomposition,  Next: Cholesky Decomposition,  Prev: QR Decomposition with Column Pivoting,  Up: Linear Algebra
+
+14.4 Singular Value Decomposition
+=================================
+
+A general rectangular M-by-N matrix A has a singular value
+decomposition (SVD) into the product of an M-by-N orthogonal matrix U,
+an N-by-N diagonal matrix of singular values S and the transpose of an
+N-by-N orthogonal square matrix V,
+
+     A = U S V^T
+
+The singular values \sigma_i = S_{ii} are all non-negative and are
+generally chosen to form a non-increasing sequence \sigma_1 >= \sigma_2
+>= ... >= \sigma_N >= 0.
+
+   The singular value decomposition of a matrix has many practical uses.
+The condition number of the matrix is given by the ratio of the largest
+singular value to the smallest singular value. The presence of a zero
+singular value indicates that the matrix is singular. The number of
+non-zero singular values indicates the rank of the matrix.  In practice
+singular value decomposition of a rank-deficient matrix will not produce
+exact zeroes for singular values, due to finite numerical precision.
+Small singular values should be edited by choosing a suitable tolerance.
+
+   For a rank-deficient matrix, the null space of A is given by the
+columns of V corresponding to the zero singular values.  Similarly, the
+range of A is given by columns of U corresponding to the non-zero
+singular values.
+
+   Note that the routines here compute the "thin" version of the SVD
+with U as M-by-N orthogonal matrix. This allows in-place computation
+and is the most commonly-used form in practice.  Mathematically, the
+"full" SVD is defined with U as an M-by-M orthogonal matrix and S as an
+M-by-N diagonal matrix (with additional rows of zeros).
+
+ -- Function: int gsl_linalg_SV_decomp (gsl_matrix * A, gsl_matrix * V,
+          gsl_vector * S, gsl_vector * WORK)
+     This function factorizes the M-by-N matrix A into the singular
+     value decomposition A = U S V^T for M >= N.  On output the matrix
+     A is replaced by U. The diagonal elements of the singular value
+     matrix S are stored in the vector S. The singular values are
+     non-negative and form a non-increasing sequence from S_1 to S_N.
+     The matrix V contains the elements of V in untransposed form. To
+     form the product U S V^T it is necessary to take the transpose of
+     V.  A workspace of length N is required in WORK.
+
+     This routine uses the Golub-Reinsch SVD algorithm.
+
+ -- Function: int gsl_linalg_SV_decomp_mod (gsl_matrix * A, gsl_matrix
+          * X, gsl_matrix * V, gsl_vector * S, gsl_vector * WORK)
+     This function computes the SVD using the modified Golub-Reinsch
+     algorithm, which is faster for M>>N.  It requires the vector WORK
+     of length N and the N-by-N matrix X as additional working space.
+
+ -- Function: int gsl_linalg_SV_decomp_jacobi (gsl_matrix * A,
+          gsl_matrix * V, gsl_vector * S)
+     This function computes the SVD of the M-by-N matrix A using
+     one-sided Jacobi orthogonalization for M >= N.  The Jacobi method
+     can compute singular values to higher relative accuracy than
+     Golub-Reinsch algorithms (see references for details).
+
+ -- Function: int gsl_linalg_SV_solve (const gsl_matrix * U, const
+          gsl_matrix * V, const gsl_vector * S, const gsl_vector * B,
+          gsl_vector * X)
+     This function solves the system A x = b using the singular value
+     decomposition (U, S, V) of A which must have been computed
+     previously with `gsl_linalg_SV_decomp'.
+
+     Only non-zero singular values are used in computing the solution.
+     The parts of the solution corresponding to singular values of zero
+     are ignored.  Other singular values can be edited out by setting
+     them to zero before calling this function.
+
+     In the over-determined case where A has more rows than columns the
+     system is solved in the least squares sense, returning the solution
+     X which minimizes ||A x - b||_2.
+
+\1f
+File: gsl-ref.info,  Node: Cholesky Decomposition,  Next: Tridiagonal Decomposition of Real Symmetric Matrices,  Prev: Singular Value Decomposition,  Up: Linear Algebra
+
+14.5 Cholesky Decomposition
+===========================
+
+A symmetric, positive definite square matrix A has a Cholesky
+decomposition into a product of a lower triangular matrix L and its
+transpose L^T,
+
+     A = L L^T
+
+This is sometimes referred to as taking the square-root of a matrix. The
+Cholesky decomposition can only be carried out when all the eigenvalues
+of the matrix are positive.  This decomposition can be used to convert
+the linear system A x = b into a pair of triangular systems (L y = b,
+L^T x = y), which can be solved by forward and back-substitution.
+
+ -- Function: int gsl_linalg_cholesky_decomp (gsl_matrix * A)
+ -- Function: int gsl_linalg_complex_cholesky_decomp
+          (gsl_matrix_complex * A)
+     These functions factorize the symmetric, positive-definite square
+     matrix A into the Cholesky decomposition A = L L^T (or A = L L^H
+     for the complex case). On input, the values from the diagonal and
+     lower-triangular part of the matrix A are used (the upper
+     triangular part is ignored).  On output the diagonal and lower
+     triangular part of the input matrix A contain the matrix L, while
+     the upper triangular part of the input matrix is overwritten with
+     L^T (the diagonal terms being identical for both L and L^T).  If
+     the matrix is not positive-definite then the decomposition will
+     fail, returning the error code `GSL_EDOM'.
+
+     When testing whether a matrix is positive-definite, disable the
+     error handler first to avoid triggering an error.
+
+ -- Function: int gsl_linalg_cholesky_solve (const gsl_matrix *
+          CHOLESKY, const gsl_vector * B, gsl_vector * X)
+ -- Function: int gsl_linalg_complex_cholesky_solve (const
+          gsl_matrix_complex * CHOLESKY, const gsl_vector_complex * B,
+          gsl_vector_complex * X)
+     These functions solve the system A x = b using the Cholesky
+     decomposition of A held in the matrix CHOLESKY which must have
+     been previously computed by `gsl_linalg_cholesky_decomp' or
+     `gsl_linalg_complex_cholesky_decomp'.
+
+ -- Function: int gsl_linalg_cholesky_svx (const gsl_matrix * CHOLESKY,
+          gsl_vector * X)
+ -- Function: int gsl_linalg_complex_cholesky_svx (const
+          gsl_matrix_complex * CHOLESKY, gsl_vector_complex * X)
+     These functions solve the system A x = b in-place using the
+     Cholesky decomposition of A held in the matrix CHOLESKY which must
+     have been previously computed by `gsl_linalg_cholesky_decomp' or
+     `gsl_linalg_complex_cholesky_decomp'. On input X should contain
+     the right-hand side b, which is replaced by the solution on output.
+
+ -- Function: int gsl_linalg_cholesky_invert (gsl_matrix * CHOLESKY)
+ -- Function: int gsl_linalg_complex_cholesky_invert
+          (gsl_matrix_complex * CHOLESKY)
+     These functions compute the inverse of a matrix from its Cholesky
+     decomposition CHOLESKY, which must have been previously computed
+     by `gsl_linalg_cholesky_decomp' or
+     `gsl_linalg_complex_cholesky_decomp'.  On output, the inverse is
+     stored in-place in CHOLESKY.
+
+\1f
+File: gsl-ref.info,  Node: Tridiagonal Decomposition of Real Symmetric Matrices,  Next: Tridiagonal Decomposition of Hermitian Matrices,  Prev: Cholesky Decomposition,  Up: Linear Algebra
+
+14.6 Tridiagonal Decomposition of Real Symmetric Matrices
+=========================================================
+
+A symmetric matrix A can be factorized by similarity transformations
+into the form,
+
+     A = Q T Q^T
+
+where Q is an orthogonal matrix and T is a symmetric tridiagonal matrix.
+
+ -- Function: int gsl_linalg_symmtd_decomp (gsl_matrix * A, gsl_vector
+          * TAU)
+     This function factorizes the symmetric square matrix A into the
+     symmetric tridiagonal decomposition Q T Q^T.  On output the
+     diagonal and subdiagonal part of the input matrix A contain the
+     tridiagonal matrix T.  The remaining lower triangular part of the
+     input matrix contains the Householder vectors which, together with
+     the Householder coefficients TAU, encode the orthogonal matrix Q.
+     This storage scheme is the same as used by LAPACK.  The upper
+     triangular part of A is not referenced.
+
+ -- Function: int gsl_linalg_symmtd_unpack (const gsl_matrix * A, const
+          gsl_vector * TAU, gsl_matrix * Q, gsl_vector * DIAG,
+          gsl_vector * SUBDIAG)
+     This function unpacks the encoded symmetric tridiagonal
+     decomposition (A, TAU) obtained from `gsl_linalg_symmtd_decomp'
+     into the orthogonal matrix Q, the vector of diagonal elements DIAG
+     and the vector of subdiagonal elements SUBDIAG.
+
+ -- Function: int gsl_linalg_symmtd_unpack_T (const gsl_matrix * A,
+          gsl_vector * DIAG, gsl_vector * SUBDIAG)
+     This function unpacks the diagonal and subdiagonal of the encoded
+     symmetric tridiagonal decomposition (A, TAU) obtained from
+     `gsl_linalg_symmtd_decomp' into the vectors DIAG and SUBDIAG.
+
+\1f
+File: gsl-ref.info,  Node: Tridiagonal Decomposition of Hermitian Matrices,  Next: Hessenberg Decomposition of Real Matrices,  Prev: Tridiagonal Decomposition of Real Symmetric Matrices,  Up: Linear Algebra
+
+14.7 Tridiagonal Decomposition of Hermitian Matrices
+====================================================
+
+A hermitian matrix A can be factorized by similarity transformations
+into the form,
+
+     A = U T U^T
+
+where U is a unitary matrix and T is a real symmetric tridiagonal
+matrix.
+
+ -- Function: int gsl_linalg_hermtd_decomp (gsl_matrix_complex * A,
+          gsl_vector_complex * TAU)
+     This function factorizes the hermitian matrix A into the symmetric
+     tridiagonal decomposition U T U^T.  On output the real parts of
+     the diagonal and subdiagonal part of the input matrix A contain
+     the tridiagonal matrix T.  The remaining lower triangular part of
+     the input matrix contains the Householder vectors which, together
+     with the Householder coefficients TAU, encode the unitary matrix
+     U. This storage scheme is the same as used by LAPACK.  The upper
+     triangular part of A and imaginary parts of the diagonal are not
+     referenced.
+
+ -- Function: int gsl_linalg_hermtd_unpack (const gsl_matrix_complex *
+          A, const gsl_vector_complex * TAU, gsl_matrix_complex * U,
+          gsl_vector * DIAG, gsl_vector * SUBDIAG)
+     This function unpacks the encoded tridiagonal decomposition (A,
+     TAU) obtained from `gsl_linalg_hermtd_decomp' into the unitary
+     matrix U, the real vector of diagonal elements DIAG and the real
+     vector of subdiagonal elements SUBDIAG.
+
+ -- Function: int gsl_linalg_hermtd_unpack_T (const gsl_matrix_complex
+          * A, gsl_vector * DIAG, gsl_vector * SUBDIAG)
+     This function unpacks the diagonal and subdiagonal of the encoded
+     tridiagonal decomposition (A, TAU) obtained from the
+     `gsl_linalg_hermtd_decomp' into the real vectors DIAG and SUBDIAG.
+
+\1f
+File: gsl-ref.info,  Node: Hessenberg Decomposition of Real Matrices,  Next: Hessenberg-Triangular Decomposition of Real Matrices,  Prev: Tridiagonal Decomposition of Hermitian Matrices,  Up: Linear Algebra
+
+14.8 Hessenberg Decomposition of Real Matrices
+==============================================
+
+A general real matrix A can be decomposed by orthogonal similarity
+transformations into the form
+
+     A = U H U^T
+
+   where U is orthogonal and H is an upper Hessenberg matrix, meaning
+that it has zeros below the first subdiagonal. The Hessenberg reduction
+is the first step in the Schur decomposition for the nonsymmetric
+eigenvalue problem, but has applications in other areas as well.
+
+ -- Function: int gsl_linalg_hessenberg_decomp (gsl_matrix * A,
+          gsl_vector * TAU)
+     This function computes the Hessenberg decomposition of the matrix
+     A by applying the similarity transformation H = U^T A U.  On
+     output, H is stored in the upper portion of A. The information
+     required to construct the matrix U is stored in the lower
+     triangular portion of A. U is a product of N - 2 Householder
+     matrices. The Householder vectors are stored in the lower portion
+     of A (below the subdiagonal) and the Householder coefficients are
+     stored in the vector TAU.  TAU must be of length N.
+
+ -- Function: int gsl_linalg_hessenberg_unpack (gsl_matrix * H,
+          gsl_vector * TAU, gsl_matrix * U)
+     This function constructs the orthogonal matrix U from the
+     information stored in the Hessenberg matrix H along with the
+     vector TAU. H and TAU are outputs from
+     `gsl_linalg_hessenberg_decomp'.
+
+ -- Function: int gsl_linalg_hessenberg_unpack_accum (gsl_matrix * H,
+          gsl_vector * TAU, gsl_matrix * V)
+     This function is similar to `gsl_linalg_hessenberg_unpack', except
+     it accumulates the matrix U into V, so that V' = VU.  The matrix V
+     must be initialized prior to calling this function.  Setting V to
+     the identity matrix provides the same result as
+     `gsl_linalg_hessenberg_unpack'. If H is order N, then V must have
+     N columns but may have any number of rows.
+
+ -- Function: int gsl_linalg_hessenberg_set_zero (gsl_matrix * H)
+     This function sets the lower triangular portion of H, below the
+     subdiagonal, to zero. It is useful for clearing out the
+     Householder vectors after calling `gsl_linalg_hessenberg_decomp'.
+
+\1f
+File: gsl-ref.info,  Node: Hessenberg-Triangular Decomposition of Real Matrices,  Next: Bidiagonalization,  Prev: Hessenberg Decomposition of Real Matrices,  Up: Linear Algebra
+
+14.9 Hessenberg-Triangular Decomposition of Real Matrices
+=========================================================
+
+A general real matrix pair (A, B) can be decomposed by orthogonal
+similarity transformations into the form
+
+     A = U H V^T
+     B = U R V^T
+
+   where U and V are orthogonal, H is an upper Hessenberg matrix, and R
+is upper triangular. The Hessenberg-Triangular reduction is the first
+step in the generalized Schur decomposition for the generalized
+eigenvalue problem.
+
+ -- Function: int gsl_linalg_hesstri_decomp (gsl_matrix * A, gsl_matrix
+          * B, gsl_matrix * U, gsl_matrix * V, gsl_vector * WORK)
+     This function computes the Hessenberg-Triangular decomposition of
+     the matrix pair (A, B). On output, H is stored in A, and R is
+     stored in B. If U and V are provided (they may be null), the
+     similarity transformations are stored in them.  Additional
+     workspace of length N is needed in WORK.
+
+\1f
+File: gsl-ref.info,  Node: Bidiagonalization,  Next: Householder Transformations,  Prev: Hessenberg-Triangular Decomposition of Real Matrices,  Up: Linear Algebra
+
+14.10 Bidiagonalization
+=======================
+
+A general matrix A can be factorized by similarity transformations into
+the form,
+
+     A = U B V^T
+
+where U and V are orthogonal matrices and B is a N-by-N bidiagonal
+matrix with non-zero entries only on the diagonal and superdiagonal.
+The size of U is M-by-N and the size of V is N-by-N.
+
+ -- Function: int gsl_linalg_bidiag_decomp (gsl_matrix * A, gsl_vector
+          * TAU_U, gsl_vector * TAU_V)
+     This function factorizes the M-by-N matrix A into bidiagonal form
+     U B V^T.  The diagonal and superdiagonal of the matrix B are
+     stored in the diagonal and superdiagonal of A.  The orthogonal
+     matrices U and V are stored as compressed Householder vectors in
+     the remaining elements of A.  The Householder coefficients are
+     stored in the vectors TAU_U and TAU_V.  The length of TAU_U must
+     equal the number of elements in the diagonal of A and the length
+     of TAU_V should be one element shorter.
+
+ -- Function: int gsl_linalg_bidiag_unpack (const gsl_matrix * A, const
+          gsl_vector * TAU_U, gsl_matrix * U, const gsl_vector * TAU_V,
+          gsl_matrix * V, gsl_vector * DIAG, gsl_vector * SUPERDIAG)
+     This function unpacks the bidiagonal decomposition of A produced by
+     `gsl_linalg_bidiag_decomp', (A, TAU_U, TAU_V) into the separate
+     orthogonal matrices U, V and the diagonal vector DIAG and
+     superdiagonal SUPERDIAG.  Note that U is stored as a compact
+     M-by-N orthogonal matrix satisfying U^T U = I for efficiency.
+
+ -- Function: int gsl_linalg_bidiag_unpack2 (gsl_matrix * A, gsl_vector
+          * TAU_U, gsl_vector * TAU_V, gsl_matrix * V)
+     This function unpacks the bidiagonal decomposition of A produced by
+     `gsl_linalg_bidiag_decomp', (A, TAU_U, TAU_V) into the separate
+     orthogonal matrices U, V and the diagonal vector DIAG and
+     superdiagonal SUPERDIAG.  The matrix U is stored in-place in A.
+
+ -- Function: int gsl_linalg_bidiag_unpack_B (const gsl_matrix * A,
+          gsl_vector * DIAG, gsl_vector * SUPERDIAG)
+     This function unpacks the diagonal and superdiagonal of the
+     bidiagonal decomposition of A from `gsl_linalg_bidiag_decomp', into
+     the diagonal vector DIAG and superdiagonal vector SUPERDIAG.
+
+\1f
+File: gsl-ref.info,  Node: Householder Transformations,  Next: Householder solver for linear systems,  Prev: Bidiagonalization,  Up: Linear Algebra
+
+14.11 Householder Transformations
+=================================
+
+A Householder transformation is a rank-1 modification of the identity
+matrix which can be used to zero out selected elements of a vector.  A
+Householder matrix P takes the form,
+
+     P = I - \tau v v^T
+
+where v is a vector (called the "Householder vector") and \tau = 2/(v^T
+v).  The functions described in this section use the rank-1 structure
+of the Householder matrix to create and apply Householder
+transformations efficiently.
+
+ -- Function: double gsl_linalg_householder_transform (gsl_vector * V)
+ -- Function: gsl_complex gsl_linalg_complex_householder_transform
+          (gsl_vector_complex * V)
+     This function prepares a Householder transformation P = I - \tau v
+     v^T which can be used to zero all the elements of the input vector
+     except the first.  On output the transformation is stored in the
+     vector V and the scalar \tau is returned.
+
+ -- Function: int gsl_linalg_householder_hm (double TAU, const
+          gsl_vector * V, gsl_matrix * A)
+ -- Function: int gsl_linalg_complex_householder_hm (gsl_complex TAU,
+          const gsl_vector_complex * V, gsl_matrix_complex * A)
+     This function applies the Householder matrix P defined by the
+     scalar TAU and the vector V to the left-hand side of the matrix A.
+     On output the result P A is stored in A.
+
+ -- Function: int gsl_linalg_householder_mh (double TAU, const
+          gsl_vector * V, gsl_matrix * A)
+ -- Function: int gsl_linalg_complex_householder_mh (gsl_complex TAU,
+          const gsl_vector_complex * V, gsl_matrix_complex * A)
+     This function applies the Householder matrix P defined by the
+     scalar TAU and the vector V to the right-hand side of the matrix
+     A. On output the result A P is stored in A.
+
+ -- Function: int gsl_linalg_householder_hv (double TAU, const
+          gsl_vector * V, gsl_vector * W)
+ -- Function: int gsl_linalg_complex_householder_hv (gsl_complex TAU,
+          const gsl_vector_complex * V, gsl_vector_complex * W)
+     This function applies the Householder transformation P defined by
+     the scalar TAU and the vector V to the vector W.  On output the
+     result P w is stored in W.
+
+\1f
+File: gsl-ref.info,  Node: Householder solver for linear systems,  Next: Tridiagonal Systems,  Prev: Householder Transformations,  Up: Linear Algebra
+
+14.12 Householder solver for linear systems
+===========================================
+
+ -- Function: int gsl_linalg_HH_solve (gsl_matrix * A, const gsl_vector
+          * B, gsl_vector * X)
+     This function solves the system A x = b directly using Householder
+     transformations. On output the solution is stored in X and B is
+     not modified. The matrix A is destroyed by the Householder
+     transformations.
+
+ -- Function: int gsl_linalg_HH_svx (gsl_matrix * A, gsl_vector * X)
+     This function solves the system A x = b in-place using Householder
+     transformations.  On input X should contain the right-hand side b,
+     which is replaced by the solution on output.  The matrix A is
+     destroyed by the Householder transformations.
+
+\1f
+File: gsl-ref.info,  Node: Tridiagonal Systems,  Next: Balancing,  Prev: Householder solver for linear systems,  Up: Linear Algebra
+
+14.13 Tridiagonal Systems
+=========================
+
+The functions described in this section efficiently solve symmetric,
+non-symmetric and cyclic tridiagonal systems with minimal storage.
+Note that the current implementations of these functions use a variant
+of Cholesky decomposition, so the tridiagonal matrix must be positive
+definite.  For non-positive definite matrices, the functions return the
+error code `GSL_ESING'.
+
+ -- Function: int gsl_linalg_solve_tridiag (const gsl_vector * DIAG,
+          const gsl_vector * E, const gsl_vector * F, const gsl_vector
+          * B, gsl_vector * X)
+     This function solves the general N-by-N system A x = b where A is
+     tridiagonal (N >= 2). The super-diagonal and sub-diagonal vectors
+     E and F must be one element shorter than the diagonal vector DIAG.
+     The form of A for the 4-by-4 case is shown below,
+
+          A = ( d_0 e_0  0   0  )
+              ( f_0 d_1 e_1  0  )
+              (  0  f_1 d_2 e_2 )
+              (  0   0  f_2 d_3 )
+
+
+ -- Function: int gsl_linalg_solve_symm_tridiag (const gsl_vector *
+          DIAG, const gsl_vector * E, const gsl_vector * B, gsl_vector
+          * X)
+     This function solves the general N-by-N system A x = b where A is
+     symmetric tridiagonal (N >= 2).  The off-diagonal vector E must be
+     one element shorter than the diagonal vector DIAG.  The form of A
+     for the 4-by-4 case is shown below,
+
+          A = ( d_0 e_0  0   0  )
+              ( e_0 d_1 e_1  0  )
+              (  0  e_1 d_2 e_2 )
+              (  0   0  e_2 d_3 )
+
+ -- Function: int gsl_linalg_solve_cyc_tridiag (const gsl_vector *
+          DIAG, const gsl_vector * E, const gsl_vector * F, const
+          gsl_vector * B, gsl_vector * X)
+     This function solves the general N-by-N system A x = b where A is
+     cyclic tridiagonal (N >= 3).  The cyclic super-diagonal and
+     sub-diagonal vectors E and F must have the same number of elements
+     as the diagonal vector DIAG.  The form of A for the 4-by-4 case is
+     shown below,
+
+          A = ( d_0 e_0  0  f_3 )
+              ( f_0 d_1 e_1  0  )
+              (  0  f_1 d_2 e_2 )
+              ( e_3  0  f_2 d_3 )
+
+ -- Function: int gsl_linalg_solve_symm_cyc_tridiag (const gsl_vector *
+          DIAG, const gsl_vector * E, const gsl_vector * B, gsl_vector
+          * X)
+     This function solves the general N-by-N system A x = b where A is
+     symmetric cyclic tridiagonal (N >= 3).  The cyclic off-diagonal
+     vector E must have the same number of elements as the diagonal
+     vector DIAG.  The form of A for the 4-by-4 case is shown below,
+
+          A = ( d_0 e_0  0  e_3 )
+              ( e_0 d_1 e_1  0  )
+              (  0  e_1 d_2 e_2 )
+              ( e_3  0  e_2 d_3 )
+
+\1f
+File: gsl-ref.info,  Node: Balancing,  Next: Linear Algebra Examples,  Prev: Tridiagonal Systems,  Up: Linear Algebra
+
+14.14 Balancing
+===============
+
+The process of balancing a matrix applies similarity transformations to
+make the rows and columns have comparable norms. This is useful, for
+example, to reduce roundoff errors in the solution of eigenvalue
+problems. Balancing a matrix A consists of replacing A with a similar
+matrix
+
+     A' = D^(-1) A D
+
+   where D is a diagonal matrix whose entries are powers of the
+floating point radix.
+
+ -- Function: int gsl_linalg_balance_matrix (gsl_matrix * A, gsl_vector
+          * D)
+     This function replaces the matrix A with its balanced counterpart
+     and stores the diagonal elements of the similarity transformation
+     into the vector D.
+
+\1f
+File: gsl-ref.info,  Node: Linear Algebra Examples,  Next: Linear Algebra References and Further Reading,  Prev: Balancing,  Up: Linear Algebra
+
+14.15 Examples
+==============
+
+The following program solves the linear system A x = b. The system to
+be solved is,
+
+     [ 0.18 0.60 0.57 0.96 ] [x0]   [1.0]
+     [ 0.41 0.24 0.99 0.58 ] [x1] = [2.0]
+     [ 0.14 0.30 0.97 0.66 ] [x2]   [3.0]
+     [ 0.51 0.13 0.19 0.85 ] [x3]   [4.0]
+
+and the solution is found using LU decomposition of the matrix A.
+
+     #include <stdio.h>
+     #include <gsl/gsl_linalg.h>
+
+     int
+     main (void)
+     {
+       double a_data[] = { 0.18, 0.60, 0.57, 0.96,
+                           0.41, 0.24, 0.99, 0.58,
+                           0.14, 0.30, 0.97, 0.66,
+                           0.51, 0.13, 0.19, 0.85 };
+
+       double b_data[] = { 1.0, 2.0, 3.0, 4.0 };
+
+       gsl_matrix_view m
+         = gsl_matrix_view_array (a_data, 4, 4);
+
+       gsl_vector_view b
+         = gsl_vector_view_array (b_data, 4);
+
+       gsl_vector *x = gsl_vector_alloc (4);
+
+       int s;
+
+       gsl_permutation * p = gsl_permutation_alloc (4);
+
+       gsl_linalg_LU_decomp (&m.matrix, p, &s);
+
+       gsl_linalg_LU_solve (&m.matrix, p, &b.vector, x);
+
+       printf ("x = \n");
+       gsl_vector_fprintf (stdout, x, "%g");
+
+       gsl_permutation_free (p);
+       gsl_vector_free (x);
+       return 0;
+     }
+
+Here is the output from the program,
+
+     x = -4.05205
+     -12.6056
+     1.66091
+     8.69377
+
+This can be verified by multiplying the solution x by the original
+matrix A using GNU OCTAVE,
+
+     octave> A = [ 0.18, 0.60, 0.57, 0.96;
+                   0.41, 0.24, 0.99, 0.58;
+                   0.14, 0.30, 0.97, 0.66;
+                   0.51, 0.13, 0.19, 0.85 ];
+
+     octave> x = [ -4.05205; -12.6056; 1.66091; 8.69377];
+
+     octave> A * x
+     ans =
+       1.0000
+       2.0000
+       3.0000
+       4.0000
+
+This reproduces the original right-hand side vector, b, in accordance
+with the equation A x = b.
+
+\1f
+File: gsl-ref.info,  Node: Linear Algebra References and Further Reading,  Prev: Linear Algebra Examples,  Up: Linear Algebra
+
+14.16 References and Further Reading
+====================================
+
+Further information on the algorithms described in this section can be
+found in the following book,
+
+     G. H. Golub, C. F. Van Loan, `Matrix Computations' (3rd Ed, 1996),
+     Johns Hopkins University Press, ISBN 0-8018-5414-8.
+
+The LAPACK library is described in the following manual,
+
+     `LAPACK Users' Guide' (Third Edition, 1999), Published by SIAM,
+     ISBN 0-89871-447-8.
+
+     `http://www.netlib.org/lapack'
+
+The LAPACK source code can be found at the website above, along with an
+online copy of the users guide.
+
+The Modified Golub-Reinsch algorithm is described in the following
+paper,
+
+     T.F. Chan, "An Improved Algorithm for Computing the Singular Value
+     Decomposition", `ACM Transactions on Mathematical Software', 8
+     (1982), pp 72-83.
+
+The Jacobi algorithm for singular value decomposition is described in
+the following papers,
+
+     J.C. Nash, "A one-sided transformation method for the singular
+     value decomposition and algebraic eigenproblem", `Computer
+     Journal', Volume 18, Number 1 (1975), p 74-76
+
+     J.C. Nash and S. Shlien "Simple algorithms for the partial singular
+     value decomposition", `Computer Journal', Volume 30 (1987), p
+     268-275.
+
+     James Demmel, Kres<imir Veselic', "Jacobi's Method is more
+     accurate than QR", `Lapack Working Note 15' (LAWN-15), October
+     1989. Available from netlib, `http://www.netlib.org/lapack/' in
+     the `lawns' or `lawnspdf' directories.
+
+\1f
+File: gsl-ref.info,  Node: Eigensystems,  Next: Fast Fourier Transforms,  Prev: Linear Algebra,  Up: Top
+
+15 Eigensystems
+***************
+
+This chapter describes functions for computing eigenvalues and
+eigenvectors of matrices.  There are routines for real symmetric, real
+nonsymmetric, complex hermitian, real generalized symmetric-definite,
+complex generalized hermitian-definite, and real generalized
+nonsymmetric eigensystems. Eigenvalues can be computed with or without
+eigenvectors.  The hermitian and real symmetric matrix algorithms are
+symmetric bidiagonalization followed by QR reduction. The nonsymmetric
+algorithm is the Francis QR double-shift.  The generalized nonsymmetric
+algorithm is the QZ method due to Moler and Stewart.
+
+   The functions described in this chapter are declared in the header
+file `gsl_eigen.h'.
+
+* Menu:
+
+* Real Symmetric Matrices::
+* Complex Hermitian Matrices::
+* Real Nonsymmetric Matrices::
+* Real Generalized Symmetric-Definite Eigensystems::
+* Complex Generalized Hermitian-Definite Eigensystems::
+* Real Generalized Nonsymmetric Eigensystems::
+* Sorting Eigenvalues and Eigenvectors::
+* Eigenvalue and Eigenvector Examples::
+* Eigenvalue and Eigenvector References::
+
+\1f
+File: gsl-ref.info,  Node: Real Symmetric Matrices,  Next: Complex Hermitian Matrices,  Up: Eigensystems
+
+15.1 Real Symmetric Matrices
+============================
+
+For real symmetric matrices, the library uses the symmetric
+bidiagonalization and QR reduction method.  This is described in Golub
+& van Loan, section 8.3.  The computed eigenvalues are accurate to an
+absolute accuracy of \epsilon ||A||_2, where \epsilon is the machine
+precision.
+
+ -- Function: gsl_eigen_symm_workspace * gsl_eigen_symm_alloc (const
+          size_t N)
+     This function allocates a workspace for computing eigenvalues of
+     N-by-N real symmetric matrices.  The size of the workspace is
+     O(2n).
+
+ -- Function: void gsl_eigen_symm_free (gsl_eigen_symm_workspace * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: int gsl_eigen_symm (gsl_matrix * A, gsl_vector * EVAL,
+          gsl_eigen_symm_workspace * W)
+     This function computes the eigenvalues of the real symmetric matrix
+     A.  Additional workspace of the appropriate size must be provided
+     in W.  The diagonal and lower triangular part of A are destroyed
+     during the computation, but the strict upper triangular part is
+     not referenced.  The eigenvalues are stored in the vector EVAL and
+     are unordered.
+
+ -- Function: gsl_eigen_symmv_workspace * gsl_eigen_symmv_alloc (const
+          size_t N)
+     This function allocates a workspace for computing eigenvalues and
+     eigenvectors of N-by-N real symmetric matrices.  The size of the
+     workspace is O(4n).
+
+ -- Function: void gsl_eigen_symmv_free (gsl_eigen_symmv_workspace * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: int gsl_eigen_symmv (gsl_matrix * A, gsl_vector * EVAL,
+          gsl_matrix * EVEC, gsl_eigen_symmv_workspace * W)
+     This function computes the eigenvalues and eigenvectors of the real
+     symmetric matrix A.  Additional workspace of the appropriate size
+     must be provided in W.  The diagonal and lower triangular part of
+     A are destroyed during the computation, but the strict upper
+     triangular part is not referenced.  The eigenvalues are stored in
+     the vector EVAL and are unordered.  The corresponding eigenvectors
+     are stored in the columns of the matrix EVEC.  For example, the
+     eigenvector in the first column corresponds to the first
+     eigenvalue.  The eigenvectors are guaranteed to be mutually
+     orthogonal and normalised to unit magnitude.
+
+\1f
+File: gsl-ref.info,  Node: Complex Hermitian Matrices,  Next: Real Nonsymmetric Matrices,  Prev: Real Symmetric Matrices,  Up: Eigensystems
+
+15.2 Complex Hermitian Matrices
+===============================
+
+For hermitian matrices, the library uses the complex form of the
+symmetric bidiagonalization and QR reduction method.
+
+ -- Function: gsl_eigen_herm_workspace * gsl_eigen_herm_alloc (const
+          size_t N)
+     This function allocates a workspace for computing eigenvalues of
+     N-by-N complex hermitian matrices.  The size of the workspace is
+     O(3n).
+
+ -- Function: void gsl_eigen_herm_free (gsl_eigen_herm_workspace * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: int gsl_eigen_herm (gsl_matrix_complex * A, gsl_vector *
+          EVAL, gsl_eigen_herm_workspace * W)
+     This function computes the eigenvalues of the complex hermitian
+     matrix A.  Additional workspace of the appropriate size must be
+     provided in W.  The diagonal and lower triangular part of A are
+     destroyed during the computation, but the strict upper triangular
+     part is not referenced.  The imaginary parts of the diagonal are
+     assumed to be zero and are not referenced. The eigenvalues are
+     stored in the vector EVAL and are unordered.
+
+ -- Function: gsl_eigen_hermv_workspace * gsl_eigen_hermv_alloc (const
+          size_t N)
+     This function allocates a workspace for computing eigenvalues and
+     eigenvectors of N-by-N complex hermitian matrices.  The size of
+     the workspace is O(5n).
+
+ -- Function: void gsl_eigen_hermv_free (gsl_eigen_hermv_workspace * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: int gsl_eigen_hermv (gsl_matrix_complex * A, gsl_vector *
+          EVAL, gsl_matrix_complex * EVEC, gsl_eigen_hermv_workspace *
+          W)
+     This function computes the eigenvalues and eigenvectors of the
+     complex hermitian matrix A.  Additional workspace of the
+     appropriate size must be provided in W.  The diagonal and lower
+     triangular part of A are destroyed during the computation, but the
+     strict upper triangular part is not referenced. The imaginary
+     parts of the diagonal are assumed to be zero and are not
+     referenced.  The eigenvalues are stored in the vector EVAL and are
+     unordered.  The corresponding complex eigenvectors are stored in
+     the columns of the matrix EVEC.  For example, the eigenvector in
+     the first column corresponds to the first eigenvalue.  The
+     eigenvectors are guaranteed to be mutually orthogonal and
+     normalised to unit magnitude.
+
+\1f
+File: gsl-ref.info,  Node: Real Nonsymmetric Matrices,  Next: Real Generalized Symmetric-Definite Eigensystems,  Prev: Complex Hermitian Matrices,  Up: Eigensystems
+
+15.3 Real Nonsymmetric Matrices
+===============================
+
+The solution of the real nonsymmetric eigensystem problem for a matrix
+A involves computing the Schur decomposition
+
+     A = Z T Z^T
+
+   where Z is an orthogonal matrix of Schur vectors and T, the Schur
+form, is quasi upper triangular with diagonal 1-by-1 blocks which are
+real eigenvalues of A, and diagonal 2-by-2 blocks whose eigenvalues are
+complex conjugate eigenvalues of A. The algorithm used is the
+double-shift Francis method.
+
+ -- Function: gsl_eigen_nonsymm_workspace * gsl_eigen_nonsymm_alloc
+          (const size_t N)
+     This function allocates a workspace for computing eigenvalues of
+     N-by-N real nonsymmetric matrices. The size of the workspace is
+     O(2n).
+
+ -- Function: void gsl_eigen_nonsymm_free (gsl_eigen_nonsymm_workspace
+          * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: void gsl_eigen_nonsymm_params (const int COMPUTE_T, const
+          int BALANCE, gsl_eigen_nonsymm_workspace * W)
+     This function sets some parameters which determine how the
+     eigenvalue problem is solved in subsequent calls to
+     `gsl_eigen_nonsymm'.
+
+     If COMPUTE_T is set to 1, the full Schur form T will be computed
+     by `gsl_eigen_nonsymm'. If it is set to 0, T will not be computed
+     (this is the default setting). Computing the full Schur form T
+     requires approximately 1.5-2 times the number of flops.
+
+     If BALANCE is set to 1, a balancing transformation is applied to
+     the matrix prior to computing eigenvalues. This transformation is
+     designed to make the rows and columns of the matrix have comparable
+     norms, and can result in more accurate eigenvalues for matrices
+     whose entries vary widely in magnitude. See *note Balancing:: for
+     more information. Note that the balancing transformation does not
+     preserve the orthogonality of the Schur vectors, so if you wish to
+     compute the Schur vectors with `gsl_eigen_nonsymm_Z' you will
+     obtain the Schur vectors of the balanced matrix instead of the
+     original matrix. The relationship will be
+
+          T = Q^t D^(-1) A D Q
+
+     where Q is the matrix of Schur vectors for the balanced matrix, and
+     D is the balancing transformation. Then `gsl_eigen_nonsymm_Z' will
+     compute a matrix Z which satisfies
+
+          T = Z^(-1) A Z
+
+     with Z = D Q. Note that Z will not be orthogonal. For this reason,
+     balancing is not performed by default.
+
+ -- Function: int gsl_eigen_nonsymm (gsl_matrix * A, gsl_vector_complex
+          * EVAL, gsl_eigen_nonsymm_workspace * W)
+     This function computes the eigenvalues of the real nonsymmetric
+     matrix A and stores them in the vector EVAL. If T is desired, it
+     is stored in the upper portion of A on output.  Otherwise, on
+     output, the diagonal of A will contain the 1-by-1 real eigenvalues
+     and 2-by-2 complex conjugate eigenvalue systems, and the rest of A
+     is destroyed. In rare cases, this function may fail to find all
+     eigenvalues. If this happens, an error code is returned and the
+     number of converged eigenvalues is stored in `w->n_evals'.  The
+     converged eigenvalues are stored in the beginning of EVAL.
+
+ -- Function: int gsl_eigen_nonsymm_Z (gsl_matrix * A,
+          gsl_vector_complex * EVAL, gsl_matrix * Z,
+          gsl_eigen_nonsymm_workspace * W)
+     This function is identical to `gsl_eigen_nonsymm' except that it
+     also computes the Schur vectors and stores them into Z.
+
+ -- Function: gsl_eigen_nonsymmv_workspace * gsl_eigen_nonsymmv_alloc
+          (const size_t N)
+     This function allocates a workspace for computing eigenvalues and
+     eigenvectors of N-by-N real nonsymmetric matrices. The size of the
+     workspace is O(5n).
+
+ -- Function: void gsl_eigen_nonsymmv_free
+          (gsl_eigen_nonsymmv_workspace * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: void gsl_eigen_nonsymmv_params (const int BALANCE,
+          gsl_eigen_nonsymm_workspace * W)
+     This function sets parameters which determine how the eigenvalue
+     problem is solved in subsequent calls to `gsl_eigen_nonsymmv'.  If
+     BALANCE is set to 1, a balancing transformation is applied to the
+     matrix. See `gsl_eigen_nonsymm_params' for more information.
+     Balancing is turned off by default since it does not preserve the
+     orthogonality of the Schur vectors.
+
+ -- Function: int gsl_eigen_nonsymmv (gsl_matrix * A,
+          gsl_vector_complex * EVAL, gsl_matrix_complex * EVEC,
+          gsl_eigen_nonsymmv_workspace * W)
+     This function computes eigenvalues and right eigenvectors of the
+     N-by-N real nonsymmetric matrix A. It first calls
+     `gsl_eigen_nonsymm' to compute the eigenvalues, Schur form T, and
+     Schur vectors. Then it finds eigenvectors of T and backtransforms
+     them using the Schur vectors. The Schur vectors are destroyed in
+     the process, but can be saved by using `gsl_eigen_nonsymmv_Z'. The
+     computed eigenvectors are normalized to have unit magnitude. On
+     output, the upper portion of A contains the Schur form T. If
+     `gsl_eigen_nonsymm' fails, no eigenvectors are computed, and an
+     error code is returned.
+
+ -- Function: int gsl_eigen_nonsymmv_Z (gsl_matrix * A,
+          gsl_vector_complex * EVAL, gsl_matrix_complex * EVEC,
+          gsl_matrix * Z, gsl_eigen_nonsymmv_workspace * W)
+     This function is identical to `gsl_eigen_nonsymmv' except that it
+     also saves the Schur vectors into Z.
+
+\1f
+File: gsl-ref.info,  Node: Real Generalized Symmetric-Definite Eigensystems,  Next: Complex Generalized Hermitian-Definite Eigensystems,  Prev: Real Nonsymmetric Matrices,  Up: Eigensystems
+
+15.4 Real Generalized Symmetric-Definite Eigensystems
+=====================================================
+
+The real generalized symmetric-definite eigenvalue problem is to find
+eigenvalues \lambda and eigenvectors x such that
+     A x = \lambda B x
+   where A and B are symmetric matrices, and B is positive-definite.
+This problem reduces to the standard symmetric eigenvalue problem by
+applying the Cholesky decomposition to B:
+                           A x = \lambda B x
+                           A x = \lambda L L^t x
+     ( L^{-1} A L^{-t} ) L^t x = \lambda L^t x
+   Therefore, the problem becomes C y = \lambda y where C = L^{-1} A
+L^{-t} is symmetric, and y = L^t x. The standard symmetric eigensolver
+can be applied to the matrix C.  The resulting eigenvectors are
+backtransformed to find the vectors of the original problem. The
+eigenvalues and eigenvectors of the generalized symmetric-definite
+eigenproblem are always real.
+
+ -- Function: gsl_eigen_gensymm_workspace * gsl_eigen_gensymm_alloc
+          (const size_t N)
+     This function allocates a workspace for computing eigenvalues of
+     N-by-N real generalized symmetric-definite eigensystems. The size
+     of the workspace is O(2n).
+
+ -- Function: void gsl_eigen_gensymm_free (gsl_eigen_gensymm_workspace
+          * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: int gsl_eigen_gensymm (gsl_matrix * A, gsl_matrix * B,
+          gsl_vector * EVAL, gsl_eigen_gensymm_workspace * W)
+     This function computes the eigenvalues of the real generalized
+     symmetric-definite matrix pair (A, B), and stores them in EVAL,
+     using the method outlined above. On output, B contains its
+     Cholesky decomposition and A is destroyed.
+
+ -- Function: gsl_eigen_gensymmv_workspace * gsl_eigen_gensymmv_alloc
+          (const size_t N)
+     This function allocates a workspace for computing eigenvalues and
+     eigenvectors of N-by-N real generalized symmetric-definite
+     eigensystems. The size of the workspace is O(4n).
+
+ -- Function: void gsl_eigen_gensymmv_free
+          (gsl_eigen_gensymmv_workspace * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: int gsl_eigen_gensymmv (gsl_matrix * A, gsl_matrix * B,
+          gsl_vector * EVAL, gsl_matrix * EVEC,
+          gsl_eigen_gensymmv_workspace * W)
+     This function computes the eigenvalues and eigenvectors of the real
+     generalized symmetric-definite matrix pair (A, B), and stores them
+     in EVAL and EVEC respectively. The computed eigenvectors are
+     normalized to have unit magnitude. On output, B contains its
+     Cholesky decomposition and A is destroyed.
+
+\1f
+File: gsl-ref.info,  Node: Complex Generalized Hermitian-Definite Eigensystems,  Next: Real Generalized Nonsymmetric Eigensystems,  Prev: Real Generalized Symmetric-Definite Eigensystems,  Up: Eigensystems
+
+15.5 Complex Generalized Hermitian-Definite Eigensystems
+========================================================
+
+The complex generalized hermitian-definite eigenvalue problem is to find
+eigenvalues \lambda and eigenvectors x such that
+     A x = \lambda B x
+   where A and B are hermitian matrices, and B is positive-definite.
+Similarly to the real case, this can be reduced to C y = \lambda y where
+C = L^{-1} A L^{-H} is hermitian, and y = L^H x. The standard hermitian
+eigensolver can be applied to the matrix C.  The resulting eigenvectors
+are backtransformed to find the vectors of the original problem. The
+eigenvalues of the generalized hermitian-definite eigenproblem are
+always real.
+
+ -- Function: gsl_eigen_genherm_workspace * gsl_eigen_genherm_alloc
+          (const size_t N)
+     This function allocates a workspace for computing eigenvalues of
+     N-by-N complex generalized hermitian-definite eigensystems. The
+     size of the workspace is O(3n).
+
+ -- Function: void gsl_eigen_genherm_free (gsl_eigen_genherm_workspace
+          * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: int gsl_eigen_genherm (gsl_matrix_complex * A,
+          gsl_matrix_complex * B, gsl_vector * EVAL,
+          gsl_eigen_genherm_workspace * W)
+     This function computes the eigenvalues of the complex generalized
+     hermitian-definite matrix pair (A, B), and stores them in EVAL,
+     using the method outlined above. On output, B contains its
+     Cholesky decomposition and A is destroyed.
+
+ -- Function: gsl_eigen_genhermv_workspace * gsl_eigen_genhermv_alloc
+          (const size_t N)
+     This function allocates a workspace for computing eigenvalues and
+     eigenvectors of N-by-N complex generalized hermitian-definite
+     eigensystems. The size of the workspace is O(5n).
+
+ -- Function: void gsl_eigen_genhermv_free
+          (gsl_eigen_genhermv_workspace * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: int gsl_eigen_genhermv (gsl_matrix_complex * A,
+          gsl_matrix_complex * B, gsl_vector * EVAL, gsl_matrix_complex
+          * EVEC, gsl_eigen_genhermv_workspace * W)
+     This function computes the eigenvalues and eigenvectors of the
+     complex generalized hermitian-definite matrix pair (A, B), and
+     stores them in EVAL and EVEC respectively. The computed
+     eigenvectors are normalized to have unit magnitude. On output, B
+     contains its Cholesky decomposition and A is destroyed.
+
+\1f
+File: gsl-ref.info,  Node: Real Generalized Nonsymmetric Eigensystems,  Next: Sorting Eigenvalues and Eigenvectors,  Prev: Complex Generalized Hermitian-Definite Eigensystems,  Up: Eigensystems
+
+15.6 Real Generalized Nonsymmetric Eigensystems
+===============================================
+
+Given two square matrices (A, B), the generalized nonsymmetric
+eigenvalue problem is to find eigenvalues \lambda and eigenvectors x
+such that
+     A x = \lambda B x
+   We may also define the problem as finding eigenvalues \mu and
+eigenvectors y such that
+     \mu A y = B y
+   Note that these two problems are equivalent (with \lambda = 1/\mu)
+if neither \lambda nor \mu is zero. If say, \lambda is zero, then it is
+still a well defined eigenproblem, but its alternate problem involving
+\mu is not. Therefore, to allow for zero (and infinite) eigenvalues,
+the problem which is actually solved is
+     \beta A x = \alpha B x
+   The eigensolver routines below will return two values \alpha and
+\beta and leave it to the user to perform the divisions \lambda =
+\alpha / \beta and \mu = \beta / \alpha.
+
+   If the determinant of the matrix pencil A - \lambda B is zero for
+all \lambda, the problem is said to be singular; otherwise it is called
+regular.  Singularity normally leads to some \alpha = \beta = 0 which
+means the eigenproblem is ill-conditioned and generally does not have
+well defined eigenvalue solutions. The routines below are intended for
+regular matrix pencils and could yield unpredictable results when
+applied to singular pencils.
+
+   The solution of the real generalized nonsymmetric eigensystem
+problem for a matrix pair (A, B) involves computing the generalized
+Schur decomposition
+     A = Q S Z^T
+     B = Q T Z^T
+   where Q and Z are orthogonal matrices of left and right Schur
+vectors respectively, and (S, T) is the generalized Schur form whose
+diagonal elements give the \alpha and \beta values. The algorithm used
+is the QZ method due to Moler and Stewart (see references).
+
+ -- Function: gsl_eigen_gen_workspace * gsl_eigen_gen_alloc (const
+          size_t N)
+     This function allocates a workspace for computing eigenvalues of
+     N-by-N real generalized nonsymmetric eigensystems. The size of the
+     workspace is O(n).
+
+ -- Function: void gsl_eigen_gen_free (gsl_eigen_gen_workspace * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: void gsl_eigen_gen_params (const int COMPUTE_S, const int
+          COMPUTE_T, const int BALANCE, gsl_eigen_gen_workspace * W)
+     This function sets some parameters which determine how the
+     eigenvalue problem is solved in subsequent calls to
+     `gsl_eigen_gen'.
+
+     If COMPUTE_S is set to 1, the full Schur form S will be computed
+     by `gsl_eigen_gen'. If it is set to 0, S will not be computed
+     (this is the default setting). S is a quasi upper triangular
+     matrix with 1-by-1 and 2-by-2 blocks on its diagonal. 1-by-1
+     blocks correspond to real eigenvalues, and 2-by-2 blocks
+     correspond to complex eigenvalues.
+
+     If COMPUTE_T is set to 1, the full Schur form T will be computed
+     by `gsl_eigen_gen'. If it is set to 0, T will not be computed
+     (this is the default setting). T is an upper triangular matrix
+     with non-negative elements on its diagonal.  Any 2-by-2 blocks in
+     S will correspond to a 2-by-2 diagonal block in T.
+
+     The BALANCE parameter is currently ignored, since generalized
+     balancing is not yet implemented.
+
+ -- Function: int gsl_eigen_gen (gsl_matrix * A, gsl_matrix * B,
+          gsl_vector_complex * ALPHA, gsl_vector * BETA,
+          gsl_eigen_gen_workspace * W)
+     This function computes the eigenvalues of the real generalized
+     nonsymmetric matrix pair (A, B), and stores them as pairs in
+     (ALPHA, BETA), where ALPHA is complex and BETA is real. If \beta_i
+     is non-zero, then \lambda = \alpha_i / \beta_i is an eigenvalue.
+     Likewise, if \alpha_i is non-zero, then \mu = \beta_i / \alpha_i
+     is an eigenvalue of the alternate problem \mu A y = B y. The
+     elements of BETA are normalized to be non-negative.
+
+     If S is desired, it is stored in A on output. If T is desired, it
+     is stored in B on output. The ordering of eigenvalues in (ALPHA,
+     BETA) follows the ordering of the diagonal blocks in the Schur
+     forms S and T. In rare cases, this function may fail to find all
+     eigenvalues. If this occurs, an error code is returned.
+
+ -- Function: int gsl_eigen_gen_QZ (gsl_matrix * A, gsl_matrix * B,
+          gsl_vector_complex * ALPHA, gsl_vector * BETA, gsl_matrix *
+          Q, gsl_matrix * Z, gsl_eigen_gen_workspace * W)
+     This function is identical to `gsl_eigen_gen' except that it also
+     computes the left and right Schur vectors and stores them into Q
+     and Z respectively.
+
+ -- Function: gsl_eigen_genv_workspace * gsl_eigen_genv_alloc (const
+          size_t N)
+     This function allocates a workspace for computing eigenvalues and
+     eigenvectors of N-by-N real generalized nonsymmetric eigensystems.
+     The size of the workspace is O(7n).
+
+ -- Function: void gsl_eigen_genv_free (gsl_eigen_genv_workspace * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: int gsl_eigen_genv (gsl_matrix * A, gsl_matrix * B,
+          gsl_vector_complex * ALPHA, gsl_vector * BETA,
+          gsl_matrix_complex * EVEC, gsl_eigen_genv_workspace * W)
+     This function computes eigenvalues and right eigenvectors of the
+     N-by-N real generalized nonsymmetric matrix pair (A, B). The
+     eigenvalues are stored in (ALPHA, BETA) and the eigenvectors are
+     stored in EVEC. It first calls `gsl_eigen_gen' to compute the
+     eigenvalues, Schur forms, and Schur vectors. Then it finds
+     eigenvectors of the Schur forms and backtransforms them using the
+     Schur vectors. The Schur vectors are destroyed in the process, but
+     can be saved by using `gsl_eigen_genv_QZ'. The computed
+     eigenvectors are normalized to have unit magnitude. On output, (A,
+     B) contains the generalized Schur form (S, T). If `gsl_eigen_gen'
+     fails, no eigenvectors are computed, and an error code is returned.
+
+ -- Function: int gsl_eigen_genv_QZ (gsl_matrix * A, gsl_matrix * B,
+          gsl_vector_complex * ALPHA, gsl_vector * BETA,
+          gsl_matrix_complex * EVEC, gsl_matrix * Q, gsl_matrix * Z,
+          gsl_eigen_genv_workspace * W)
+     This function is identical to `gsl_eigen_genv' except that it also
+     computes the left and right Schur vectors and stores them into Q
+     and Z respectively.
+
+\1f
+File: gsl-ref.info,  Node: Sorting Eigenvalues and Eigenvectors,  Next: Eigenvalue and Eigenvector Examples,  Prev: Real Generalized Nonsymmetric Eigensystems,  Up: Eigensystems
+
+15.7 Sorting Eigenvalues and Eigenvectors
+=========================================
+
+ -- Function: int gsl_eigen_symmv_sort (gsl_vector * EVAL, gsl_matrix *
+          EVEC, gsl_eigen_sort_t SORT_TYPE)
+     This function simultaneously sorts the eigenvalues stored in the
+     vector EVAL and the corresponding real eigenvectors stored in the
+     columns of the matrix EVEC into ascending or descending order
+     according to the value of the parameter SORT_TYPE,
+
+    `GSL_EIGEN_SORT_VAL_ASC'
+          ascending order in numerical value
+
+    `GSL_EIGEN_SORT_VAL_DESC'
+          descending order in numerical value
+
+    `GSL_EIGEN_SORT_ABS_ASC'
+          ascending order in magnitude
+
+    `GSL_EIGEN_SORT_ABS_DESC'
+          descending order in magnitude
+
+
+ -- Function: int gsl_eigen_hermv_sort (gsl_vector * EVAL,
+          gsl_matrix_complex * EVEC, gsl_eigen_sort_t SORT_TYPE)
+     This function simultaneously sorts the eigenvalues stored in the
+     vector EVAL and the corresponding complex eigenvectors stored in
+     the columns of the matrix EVEC into ascending or descending order
+     according to the value of the parameter SORT_TYPE as shown above.
+
+ -- Function: int gsl_eigen_nonsymmv_sort (gsl_vector_complex * EVAL,
+          gsl_matrix_complex * EVEC, gsl_eigen_sort_t SORT_TYPE)
+     This function simultaneously sorts the eigenvalues stored in the
+     vector EVAL and the corresponding complex eigenvectors stored in
+     the columns of the matrix EVEC into ascending or descending order
+     according to the value of the parameter SORT_TYPE as shown above.
+     Only `GSL_EIGEN_SORT_ABS_ASC' and `GSL_EIGEN_SORT_ABS_DESC' are
+     supported due to the eigenvalues being complex.
+
+ -- Function: int gsl_eigen_gensymmv_sort (gsl_vector * EVAL,
+          gsl_matrix * EVEC, gsl_eigen_sort_t SORT_TYPE)
+     This function simultaneously sorts the eigenvalues stored in the
+     vector EVAL and the corresponding real eigenvectors stored in the
+     columns of the matrix EVEC into ascending or descending order
+     according to the value of the parameter SORT_TYPE as shown above.
+
+ -- Function: int gsl_eigen_genhermv_sort (gsl_vector * EVAL,
+          gsl_matrix_complex * EVEC, gsl_eigen_sort_t SORT_TYPE)
+     This function simultaneously sorts the eigenvalues stored in the
+     vector EVAL and the corresponding complex eigenvectors stored in
+     the columns of the matrix EVEC into ascending or descending order
+     according to the value of the parameter SORT_TYPE as shown above.
+
+ -- Function: int gsl_eigen_genv_sort (gsl_vector_complex * ALPHA,
+          gsl_vector * BETA, gsl_matrix_complex * EVEC,
+          gsl_eigen_sort_t SORT_TYPE)
+     This function simultaneously sorts the eigenvalues stored in the
+     vectors (ALPHA, BETA) and the corresponding complex eigenvectors
+     stored in the columns of the matrix EVEC into ascending or
+     descending order according to the value of the parameter SORT_TYPE
+     as shown above. Only `GSL_EIGEN_SORT_ABS_ASC' and
+     `GSL_EIGEN_SORT_ABS_DESC' are supported due to the eigenvalues
+     being complex.
+
+\1f
+File: gsl-ref.info,  Node: Eigenvalue and Eigenvector Examples,  Next: Eigenvalue and Eigenvector References,  Prev: Sorting Eigenvalues and Eigenvectors,  Up: Eigensystems
+
+15.8 Examples
+=============
+
+The following program computes the eigenvalues and eigenvectors of the
+4-th order Hilbert matrix, H(i,j) = 1/(i + j + 1).
+
+     #include <stdio.h>
+     #include <gsl/gsl_math.h>
+     #include <gsl/gsl_eigen.h>
+
+     int
+     main (void)
+     {
+       double data[] = { 1.0  , 1/2.0, 1/3.0, 1/4.0,
+                         1/2.0, 1/3.0, 1/4.0, 1/5.0,
+                         1/3.0, 1/4.0, 1/5.0, 1/6.0,
+                         1/4.0, 1/5.0, 1/6.0, 1/7.0 };
+
+       gsl_matrix_view m
+         = gsl_matrix_view_array (data, 4, 4);
+
+       gsl_vector *eval = gsl_vector_alloc (4);
+       gsl_matrix *evec = gsl_matrix_alloc (4, 4);
+
+       gsl_eigen_symmv_workspace * w =
+         gsl_eigen_symmv_alloc (4);
+
+       gsl_eigen_symmv (&m.matrix, eval, evec, w);
+
+       gsl_eigen_symmv_free (w);
+
+       gsl_eigen_symmv_sort (eval, evec,
+                             GSL_EIGEN_SORT_ABS_ASC);
+
+       {
+         int i;
+
+         for (i = 0; i < 4; i++)
+           {
+             double eval_i
+                = gsl_vector_get (eval, i);
+             gsl_vector_view evec_i
+                = gsl_matrix_column (evec, i);
+
+             printf ("eigenvalue = %g\n", eval_i);
+             printf ("eigenvector = \n");
+             gsl_vector_fprintf (stdout,
+                                 &evec_i.vector, "%g");
+           }
+       }
+
+       gsl_vector_free (eval);
+       gsl_matrix_free (evec);
+
+       return 0;
+     }
+
+Here is the beginning of the output from the program,
+
+     $ ./a.out
+     eigenvalue = 9.67023e-05
+     eigenvector =
+     -0.0291933
+     0.328712
+     -0.791411
+     0.514553
+     ...
+
+This can be compared with the corresponding output from GNU OCTAVE,
+
+     octave> [v,d] = eig(hilb(4));
+     octave> diag(d)
+     ans =
+
+        9.6702e-05
+        6.7383e-03
+        1.6914e-01
+        1.5002e+00
+
+     octave> v
+     v =
+
+        0.029193   0.179186  -0.582076   0.792608
+       -0.328712  -0.741918   0.370502   0.451923
+        0.791411   0.100228   0.509579   0.322416
+       -0.514553   0.638283   0.514048   0.252161
+
+Note that the eigenvectors can differ by a change of sign, since the
+sign of an eigenvector is arbitrary.
+
+   The following program illustrates the use of the nonsymmetric
+eigensolver, by computing the eigenvalues and eigenvectors of the
+Vandermonde matrix V(x;i,j) = x_i^{n - j} with x = (-1,-2,3,4).
+
+     #include <stdio.h>
+     #include <gsl/gsl_math.h>
+     #include <gsl/gsl_eigen.h>
+
+     int
+     main (void)
+     {
+       double data[] = { -1.0, 1.0, -1.0, 1.0,
+                         -8.0, 4.0, -2.0, 1.0,
+                         27.0, 9.0, 3.0, 1.0,
+                         64.0, 16.0, 4.0, 1.0 };
+
+       gsl_matrix_view m
+         = gsl_matrix_view_array (data, 4, 4);
+
+       gsl_vector_complex *eval = gsl_vector_complex_alloc (4);
+       gsl_matrix_complex *evec = gsl_matrix_complex_alloc (4, 4);
+
+       gsl_eigen_nonsymmv_workspace * w =
+         gsl_eigen_nonsymmv_alloc (4);
+
+       gsl_eigen_nonsymmv (&m.matrix, eval, evec, w);
+
+       gsl_eigen_nonsymmv_free (w);
+
+       gsl_eigen_nonsymmv_sort (eval, evec,
+                                GSL_EIGEN_SORT_ABS_DESC);
+
+       {
+         int i, j;
+
+         for (i = 0; i < 4; i++)
+           {
+             gsl_complex eval_i
+                = gsl_vector_complex_get (eval, i);
+             gsl_vector_complex_view evec_i
+                = gsl_matrix_complex_column (evec, i);
+
+             printf ("eigenvalue = %g + %gi\n",
+                     GSL_REAL(eval_i), GSL_IMAG(eval_i));
+             printf ("eigenvector = \n");
+             for (j = 0; j < 4; ++j)
+               {
+                 gsl_complex z =
+                   gsl_vector_complex_get(&evec_i.vector, j);
+                 printf("%g + %gi\n", GSL_REAL(z), GSL_IMAG(z));
+               }
+           }
+       }
+
+       gsl_vector_complex_free(eval);
+       gsl_matrix_complex_free(evec);
+
+       return 0;
+     }
+
+Here is the beginning of the output from the program,
+
+     $ ./a.out
+     eigenvalue = -6.41391 + 0i
+     eigenvector =
+     -0.0998822 + 0i
+     -0.111251 + 0i
+     0.292501 + 0i
+     0.944505 + 0i
+     eigenvalue = 5.54555 + 3.08545i
+     eigenvector =
+     -0.043487 + -0.0076308i
+     0.0642377 + -0.142127i
+     -0.515253 + 0.0405118i
+     -0.840592 + -0.00148565i
+     ...
+
+This can be compared with the corresponding output from GNU OCTAVE,
+
+     octave> [v,d] = eig(vander([-1 -2 3 4]));
+     octave> diag(d)
+     ans =
+
+       -6.4139 + 0.0000i
+        5.5456 + 3.0854i
+        5.5456 - 3.0854i
+        2.3228 + 0.0000i
+
+     octave> v
+     v =
+
+      Columns 1 through 3:
+
+       -0.09988 + 0.00000i  -0.04350 - 0.00755i  -0.04350 + 0.00755i
+       -0.11125 + 0.00000i   0.06399 - 0.14224i   0.06399 + 0.14224i
+        0.29250 + 0.00000i  -0.51518 + 0.04142i  -0.51518 - 0.04142i
+        0.94451 + 0.00000i  -0.84059 + 0.00000i  -0.84059 - 0.00000i
+
+      Column 4:
+
+       -0.14493 + 0.00000i
+        0.35660 + 0.00000i
+        0.91937 + 0.00000i
+        0.08118 + 0.00000i
+   Note that the eigenvectors corresponding to the eigenvalue 5.54555 +
+3.08545i differ by the multiplicative constant 0.9999984 + 0.0017674i
+which is an arbitrary phase factor of magnitude 1.
+
+\1f
+File: gsl-ref.info,  Node: Eigenvalue and Eigenvector References,  Prev: Eigenvalue and Eigenvector Examples,  Up: Eigensystems
+
+15.9 References and Further Reading
+===================================
+
+Further information on the algorithms described in this section can be
+found in the following book,
+
+     G. H. Golub, C. F. Van Loan, `Matrix Computations' (3rd Ed, 1996),
+     Johns Hopkins University Press, ISBN 0-8018-5414-8.
+
+Further information on the generalized eigensystems QZ algorithm can be
+found in this paper,
+
+     C. Moler, G. Stewart, "An Algorithm for Generalized Matrix
+     Eigenvalue Problems", SIAM J. Numer. Anal., Vol 10, No 2, 1973.
+
+Eigensystem routines for very large matrices can be found in the
+Fortran library LAPACK. The LAPACK library is described in,
+
+     `LAPACK Users' Guide' (Third Edition, 1999), Published by SIAM,
+     ISBN 0-89871-447-8.
+
+     `http://www.netlib.org/lapack'
+
+The LAPACK source code can be found at the website above along with an
+online copy of the users guide.
+
+\1f
+File: gsl-ref.info,  Node: Fast Fourier Transforms,  Next: Numerical Integration,  Prev: Eigensystems,  Up: Top
+
+16 Fast Fourier Transforms (FFTs)
+*********************************
+
+This chapter describes functions for performing Fast Fourier Transforms
+(FFTs).  The library includes radix-2 routines (for lengths which are a
+power of two) and mixed-radix routines (which work for any length).  For
+efficiency there are separate versions of the routines for real data and
+for complex data.  The mixed-radix routines are a reimplementation of
+the FFTPACK library of Paul Swarztrauber.  Fortran code for FFTPACK is
+available on Netlib (FFTPACK also includes some routines for sine and
+cosine transforms but these are currently not available in GSL).  For
+details and derivations of the underlying algorithms consult the
+document `GSL FFT Algorithms' (*note FFT References and Further
+Reading::)
+
+* Menu:
+
+* Mathematical Definitions::
+* Overview of complex data FFTs::
+* Radix-2 FFT routines for complex data::
+* Mixed-radix FFT routines for complex data::
+* Overview of real data FFTs::
+* Radix-2 FFT routines for real data::
+* Mixed-radix FFT routines for real data::
+* FFT References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Mathematical Definitions,  Next: Overview of complex data FFTs,  Up: Fast Fourier Transforms
+
+16.1 Mathematical Definitions
+=============================
+
+Fast Fourier Transforms are efficient algorithms for calculating the
+discrete Fourier transform (DFT),
+
+     x_j = \sum_{k=0}^{n-1} z_k \exp(-2\pi i j k / n)
+
+   The DFT usually arises as an approximation to the continuous Fourier
+transform when functions are sampled at discrete intervals in space or
+time.  The naive evaluation of the discrete Fourier transform is a
+matrix-vector multiplication W\vec{z}. A general matrix-vector
+multiplication takes O(n^2) operations for n data-points.  Fast Fourier
+transform algorithms use a divide-and-conquer strategy to factorize the
+matrix W into smaller sub-matrices, corresponding to the integer
+factors of the length n.  If n can be factorized into a product of
+integers f_1 f_2 ... f_m then the DFT can be computed in O(n \sum f_i)
+operations.  For a radix-2 FFT this gives an operation count of O(n
+\log_2 n).
+
+   All the FFT functions offer three types of transform: forwards,
+inverse and backwards, based on the same mathematical definitions.  The
+definition of the "forward Fourier transform", x = FFT(z), is,
+
+     x_j = \sum_{k=0}^{n-1} z_k \exp(-2\pi i j k / n)
+
+and the definition of the "inverse Fourier transform", x = IFFT(z), is,
+
+     z_j = {1 \over n} \sum_{k=0}^{n-1} x_k \exp(2\pi i j k / n).
+
+The factor of 1/n makes this a true inverse.  For example, a call to
+`gsl_fft_complex_forward' followed by a call to
+`gsl_fft_complex_inverse' should return the original data (within
+numerical errors).
+
+   In general there are two possible choices for the sign of the
+exponential in the transform/ inverse-transform pair. GSL follows the
+same convention as FFTPACK, using a negative exponential for the forward
+transform.  The advantage of this convention is that the inverse
+transform recreates the original function with simple Fourier
+synthesis.  Numerical Recipes uses the opposite convention, a positive
+exponential in the forward transform.
+
+   The "backwards FFT" is simply our terminology for an unscaled
+version of the inverse FFT,
+
+     z^{backwards}_j = \sum_{k=0}^{n-1} x_k \exp(2\pi i j k / n).
+
+When the overall scale of the result is unimportant it is often
+convenient to use the backwards FFT instead of the inverse to save
+unnecessary divisions.
+
+\1f
+File: gsl-ref.info,  Node: Overview of complex data FFTs,  Next: Radix-2 FFT routines for complex data,  Prev: Mathematical Definitions,  Up: Fast Fourier Transforms
+
+16.2 Overview of complex data FFTs
+==================================
+
+The inputs and outputs for the complex FFT routines are "packed arrays"
+of floating point numbers.  In a packed array the real and imaginary
+parts of each complex number are placed in alternate neighboring
+elements.  For example, the following definition of a packed array of
+length 6,
+
+     double x[3*2];
+     gsl_complex_packed_array data = x;
+
+can be used to hold an array of three complex numbers, `z[3]', in the
+following way,
+
+     data[0] = Re(z[0])
+     data[1] = Im(z[0])
+     data[2] = Re(z[1])
+     data[3] = Im(z[1])
+     data[4] = Re(z[2])
+     data[5] = Im(z[2])
+
+The array indices for the data have the same ordering as those in the
+definition of the DFT--i.e. there are no index transformations or
+permutations of the data.
+
+   A "stride" parameter allows the user to perform transforms on the
+elements `z[stride*i]' instead of `z[i]'.  A stride greater than 1 can
+be used to take an in-place FFT of the column of a matrix. A stride of
+1 accesses the array without any additional spacing between elements.
+
+   To perform an FFT on a vector argument, such as `gsl_vector_complex
+* v', use the following definitions (or their equivalents) when calling
+the functions described in this chapter:
+
+     gsl_complex_packed_array data = v->data;
+     size_t stride = v->stride;
+     size_t n = v->size;
+
+   For physical applications it is important to remember that the index
+appearing in the DFT does not correspond directly to a physical
+frequency.  If the time-step of the DFT is \Delta then the
+frequency-domain includes both positive and negative frequencies,
+ranging from -1/(2\Delta) through 0 to +1/(2\Delta).  The positive
+frequencies are stored from the beginning of the array up to the
+middle, and the negative frequencies are stored backwards from the end
+of the array.
+
+   Here is a table which shows the layout of the array DATA, and the
+correspondence between the time-domain data z, and the frequency-domain
+data x.
+
+     index    z               x = FFT(z)
+
+     0        z(t = 0)        x(f = 0)
+     1        z(t = 1)        x(f = 1/(n Delta))
+     2        z(t = 2)        x(f = 2/(n Delta))
+     .        ........        ..................
+     n/2      z(t = n/2)      x(f = +1/(2 Delta),
+                                    -1/(2 Delta))
+     .        ........        ..................
+     n-3      z(t = n-3)      x(f = -3/(n Delta))
+     n-2      z(t = n-2)      x(f = -2/(n Delta))
+     n-1      z(t = n-1)      x(f = -1/(n Delta))
+
+When n is even the location n/2 contains the most positive and negative
+frequencies (+1/(2 \Delta), -1/(2 \Delta)) which are equivalent.  If n
+is odd then general structure of the table above still applies, but n/2
+does not appear.
+
+\1f
+File: gsl-ref.info,  Node: Radix-2 FFT routines for complex data,  Next: Mixed-radix FFT routines for complex data,  Prev: Overview of complex data FFTs,  Up: Fast Fourier Transforms
+
+16.3 Radix-2 FFT routines for complex data
+==========================================
+
+The radix-2 algorithms described in this section are simple and compact,
+although not necessarily the most efficient.  They use the Cooley-Tukey
+algorithm to compute in-place complex FFTs for lengths which are a power
+of 2--no additional storage is required.  The corresponding
+self-sorting mixed-radix routines offer better performance at the
+expense of requiring additional working space.
+
+   All the functions described in this section are declared in the
+header file `gsl_fft_complex.h'.
+
+ -- Function: int gsl_fft_complex_radix2_forward
+          (gsl_complex_packed_array DATA, size_t STRIDE, size_t N)
+ -- Function: int gsl_fft_complex_radix2_transform
+          (gsl_complex_packed_array DATA, size_t STRIDE, size_t N,
+          gsl_fft_direction SIGN)
+ -- Function: int gsl_fft_complex_radix2_backward
+          (gsl_complex_packed_array DATA, size_t STRIDE, size_t N)
+ -- Function: int gsl_fft_complex_radix2_inverse
+          (gsl_complex_packed_array DATA, size_t STRIDE, size_t N)
+     These functions compute forward, backward and inverse FFTs of
+     length N with stride STRIDE, on the packed complex array DATA
+     using an in-place radix-2 decimation-in-time algorithm.  The
+     length of the transform N is restricted to powers of two.  For the
+     `transform' version of the function the SIGN argument can be
+     either `forward' (-1) or `backward' (+1).
+
+     The functions return a value of `GSL_SUCCESS' if no errors were
+     detected, or `GSL_EDOM' if the length of the data N is not a power
+     of two.
+
+ -- Function: int gsl_fft_complex_radix2_dif_forward
+          (gsl_complex_packed_array DATA, size_t STRIDE, size_t N)
+ -- Function: int gsl_fft_complex_radix2_dif_transform
+          (gsl_complex_packed_array DATA, size_t STRIDE, size_t N,
+          gsl_fft_direction SIGN)
+ -- Function: int gsl_fft_complex_radix2_dif_backward
+          (gsl_complex_packed_array DATA, size_t STRIDE, size_t N)
+ -- Function: int gsl_fft_complex_radix2_dif_inverse
+          (gsl_complex_packed_array DATA, size_t STRIDE, size_t N)
+     These are decimation-in-frequency versions of the radix-2 FFT
+     functions.
+
+
+   Here is an example program which computes the FFT of a short pulse
+in a sample of length 128.  To make the resulting Fourier transform
+real the pulse is defined for equal positive and negative times (-10
+... 10), where the negative times wrap around the end of the array.
+
+     #include <stdio.h>
+     #include <math.h>
+     #include <gsl/gsl_errno.h>
+     #include <gsl/gsl_fft_complex.h>
+
+     #define REAL(z,i) ((z)[2*(i)])
+     #define IMAG(z,i) ((z)[2*(i)+1])
+
+     int
+     main (void)
+     {
+       int i; double data[2*128];
+
+       for (i = 0; i < 128; i++)
+         {
+            REAL(data,i) = 0.0; IMAG(data,i) = 0.0;
+         }
+
+       REAL(data,0) = 1.0;
+
+       for (i = 1; i <= 10; i++)
+         {
+            REAL(data,i) = REAL(data,128-i) = 1.0;
+         }
+
+       for (i = 0; i < 128; i++)
+         {
+           printf ("%d %e %e\n", i,
+                   REAL(data,i), IMAG(data,i));
+         }
+       printf ("\n");
+
+       gsl_fft_complex_radix2_forward (data, 1, 128);
+
+       for (i = 0; i < 128; i++)
+         {
+           printf ("%d %e %e\n", i,
+                   REAL(data,i)/sqrt(128),
+                   IMAG(data,i)/sqrt(128));
+         }
+
+       return 0;
+     }
+
+Note that we have assumed that the program is using the default error
+handler (which calls `abort' for any errors).  If you are not using a
+safe error handler you would need to check the return status of
+`gsl_fft_complex_radix2_forward'.
+
+   The transformed data is rescaled by 1/\sqrt n so that it fits on the
+same plot as the input.  Only the real part is shown, by the choice of
+the input data the imaginary part is zero.  Allowing for the
+wrap-around of negative times at t=128, and working in units of k/n,
+the DFT approximates the continuum Fourier transform, giving a
+modulated sine function.
+
+\1f
+File: gsl-ref.info,  Node: Mixed-radix FFT routines for complex data,  Next: Overview of real data FFTs,  Prev: Radix-2 FFT routines for complex data,  Up: Fast Fourier Transforms
+
+16.4 Mixed-radix FFT routines for complex data
+==============================================
+
+This section describes mixed-radix FFT algorithms for complex data.  The
+mixed-radix functions work for FFTs of any length.  They are a
+reimplementation of Paul Swarztrauber's Fortran FFTPACK library.  The
+theory is explained in the review article `Self-sorting Mixed-radix
+FFTs' by Clive Temperton.  The routines here use the same indexing
+scheme and basic algorithms as FFTPACK.
+
+   The mixed-radix algorithm is based on sub-transform modules--highly
+optimized small length FFTs which are combined to create larger FFTs.
+There are efficient modules for factors of 2, 3, 4, 5, 6 and 7.  The
+modules for the composite factors of 4 and 6 are faster than combining
+the modules for 2*2 and 2*3.
+
+   For factors which are not implemented as modules there is a
+fall-back to a general length-n module which uses Singleton's method for
+efficiently computing a DFT. This module is O(n^2), and slower than a
+dedicated module would be but works for any length n.  Of course,
+lengths which use the general length-n module will still be factorized
+as much as possible.  For example, a length of 143 will be factorized
+into 11*13.  Large prime factors are the worst case scenario, e.g. as
+found in n=2*3*99991, and should be avoided because their O(n^2)
+scaling will dominate the run-time (consult the document `GSL FFT
+Algorithms' included in the GSL distribution if you encounter this
+problem).
+
+   The mixed-radix initialization function
+`gsl_fft_complex_wavetable_alloc' returns the list of factors chosen by
+the library for a given length n.  It can be used to check how well the
+length has been factorized, and estimate the run-time.  To a first
+approximation the run-time scales as n \sum f_i, where the f_i are the
+factors of n.  For programs under user control you may wish to issue a
+warning that the transform will be slow when the length is poorly
+factorized.  If you frequently encounter data lengths which cannot be
+factorized using the existing small-prime modules consult `GSL FFT
+Algorithms' for details on adding support for other factors.
+
+   All the functions described in this section are declared in the
+header file `gsl_fft_complex.h'.
+
+ -- Function: gsl_fft_complex_wavetable *
+gsl_fft_complex_wavetable_alloc (size_t N)
+     This function prepares a trigonometric lookup table for a complex
+     FFT of length N. The function returns a pointer to the newly
+     allocated `gsl_fft_complex_wavetable' if no errors were detected,
+     and a null pointer in the case of error.  The length N is
+     factorized into a product of subtransforms, and the factors and
+     their trigonometric coefficients are stored in the wavetable. The
+     trigonometric coefficients are computed using direct calls to
+     `sin' and `cos', for accuracy.  Recursion relations could be used
+     to compute the lookup table faster, but if an application performs
+     many FFTs of the same length then this computation is a one-off
+     overhead which does not affect the final throughput.
+
+     The wavetable structure can be used repeatedly for any transform
+     of the same length.  The table is not modified by calls to any of
+     the other FFT functions.  The same wavetable can be used for both
+     forward and backward (or inverse) transforms of a given length.
+
+ -- Function: void gsl_fft_complex_wavetable_free
+          (gsl_fft_complex_wavetable * WAVETABLE)
+     This function frees the memory associated with the wavetable
+     WAVETABLE.  The wavetable can be freed if no further FFTs of the
+     same length will be needed.
+
+These functions operate on a `gsl_fft_complex_wavetable' structure
+which contains internal parameters for the FFT.  It is not necessary to
+set any of the components directly but it can sometimes be useful to
+examine them.  For example, the chosen factorization of the FFT length
+is given and can be used to provide an estimate of the run-time or
+numerical error. The wavetable structure is declared in the header file
+`gsl_fft_complex.h'.
+
+ -- Data Type: gsl_fft_complex_wavetable
+     This is a structure that holds the factorization and trigonometric
+     lookup tables for the mixed radix fft algorithm.  It has the
+     following components:
+
+    `size_t n'
+          This is the number of complex data points
+
+    `size_t nf'
+          This is the number of factors that the length `n' was
+          decomposed into.
+
+    `size_t factor[64]'
+          This is the array of factors.  Only the first `nf' elements
+          are used.
+
+    `gsl_complex * trig'
+          This is a pointer to a preallocated trigonometric lookup
+          table of `n' complex elements.
+
+    `gsl_complex * twiddle[64]'
+          This is an array of pointers into `trig', giving the twiddle
+          factors for each pass.
+
+The mixed radix algorithms require additional working space to hold the
+intermediate steps of the transform.
+
+ -- Function: gsl_fft_complex_workspace *
+gsl_fft_complex_workspace_alloc (size_t N)
+     This function allocates a workspace for a complex transform of
+     length N.
+
+ -- Function: void gsl_fft_complex_workspace_free
+          (gsl_fft_complex_workspace * WORKSPACE)
+     This function frees the memory associated with the workspace
+     WORKSPACE. The workspace can be freed if no further FFTs of the
+     same length will be needed.
+
+The following functions compute the transform,
+
+ -- Function: int gsl_fft_complex_forward (gsl_complex_packed_array
+          DATA, size_t STRIDE, size_t N, const
+          gsl_fft_complex_wavetable * WAVETABLE,
+          gsl_fft_complex_workspace * WORK)
+ -- Function: int gsl_fft_complex_transform (gsl_complex_packed_array
+          DATA, size_t STRIDE, size_t N, const
+          gsl_fft_complex_wavetable * WAVETABLE,
+          gsl_fft_complex_workspace * WORK, gsl_fft_direction SIGN)
+ -- Function: int gsl_fft_complex_backward (gsl_complex_packed_array
+          DATA, size_t STRIDE, size_t N, const
+          gsl_fft_complex_wavetable * WAVETABLE,
+          gsl_fft_complex_workspace * WORK)
+ -- Function: int gsl_fft_complex_inverse (gsl_complex_packed_array
+          DATA, size_t STRIDE, size_t N, const
+          gsl_fft_complex_wavetable * WAVETABLE,
+          gsl_fft_complex_workspace * WORK)
+     These functions compute forward, backward and inverse FFTs of
+     length N with stride STRIDE, on the packed complex array DATA,
+     using a mixed radix decimation-in-frequency algorithm.  There is
+     no restriction on the length N.  Efficient modules are provided
+     for subtransforms of length 2, 3, 4, 5, 6 and 7.  Any remaining
+     factors are computed with a slow, O(n^2), general-n module. The
+     caller must supply a WAVETABLE containing the trigonometric lookup
+     tables and a workspace WORK.  For the `transform' version of the
+     function the SIGN argument can be either `forward' (-1) or
+     `backward' (+1).
+
+     The functions return a value of `0' if no errors were detected. The
+     following `gsl_errno' conditions are defined for these functions:
+
+    `GSL_EDOM'
+          The length of the data N is not a positive integer (i.e. N is
+          zero).
+
+    `GSL_EINVAL'
+          The length of the data N and the length used to compute the
+          given WAVETABLE do not match.
+
+   Here is an example program which computes the FFT of a short pulse
+in a sample of length 630 (=2*3*3*5*7) using the mixed-radix algorithm.
+
+     #include <stdio.h>
+     #include <math.h>
+     #include <gsl/gsl_errno.h>
+     #include <gsl/gsl_fft_complex.h>
+
+     #define REAL(z,i) ((z)[2*(i)])
+     #define IMAG(z,i) ((z)[2*(i)+1])
+
+     int
+     main (void)
+     {
+       int i;
+       const int n = 630;
+       double data[2*n];
+
+       gsl_fft_complex_wavetable * wavetable;
+       gsl_fft_complex_workspace * workspace;
+
+       for (i = 0; i < n; i++)
+         {
+           REAL(data,i) = 0.0;
+           IMAG(data,i) = 0.0;
+         }
+
+       data[0] = 1.0;
+
+       for (i = 1; i <= 10; i++)
+         {
+           REAL(data,i) = REAL(data,n-i) = 1.0;
+         }
+
+       for (i = 0; i < n; i++)
+         {
+           printf ("%d: %e %e\n", i, REAL(data,i),
+                                     IMAG(data,i));
+         }
+       printf ("\n");
+
+       wavetable = gsl_fft_complex_wavetable_alloc (n);
+       workspace = gsl_fft_complex_workspace_alloc (n);
+
+       for (i = 0; i < wavetable->nf; i++)
+         {
+            printf ("# factor %d: %d\n", i,
+                    wavetable->factor[i]);
+         }
+
+       gsl_fft_complex_forward (data, 1, n,
+                                wavetable, workspace);
+
+       for (i = 0; i < n; i++)
+         {
+           printf ("%d: %e %e\n", i, REAL(data,i),
+                                     IMAG(data,i));
+         }
+
+       gsl_fft_complex_wavetable_free (wavetable);
+       gsl_fft_complex_workspace_free (workspace);
+       return 0;
+     }
+
+Note that we have assumed that the program is using the default `gsl'
+error handler (which calls `abort' for any errors).  If you are not
+using a safe error handler you would need to check the return status of
+all the `gsl' routines.
+
+\1f
+File: gsl-ref.info,  Node: Overview of real data FFTs,  Next: Radix-2 FFT routines for real data,  Prev: Mixed-radix FFT routines for complex data,  Up: Fast Fourier Transforms
+
+16.5 Overview of real data FFTs
+===============================
+
+The functions for real data are similar to those for complex data.
+However, there is an important difference between forward and inverse
+transforms.  The Fourier transform of a real sequence is not real.  It
+is a complex sequence with a special symmetry:
+
+     z_k = z_{n-k}^*
+
+A sequence with this symmetry is called "conjugate-complex" or
+"half-complex".  This different structure requires different storage
+layouts for the forward transform (from real to half-complex) and
+inverse transform (from half-complex back to real).  As a consequence
+the routines are divided into two sets: functions in `gsl_fft_real'
+which operate on real sequences and functions in `gsl_fft_halfcomplex'
+which operate on half-complex sequences.
+
+   Functions in `gsl_fft_real' compute the frequency coefficients of a
+real sequence.  The half-complex coefficients c of a real sequence x
+are given by Fourier analysis,
+
+     c_k = \sum_{j=0}^{n-1} x_j \exp(-2 \pi i j k /n)
+
+Functions in `gsl_fft_halfcomplex' compute inverse or backwards
+transforms.  They reconstruct real sequences by Fourier synthesis from
+their half-complex frequency coefficients, c,
+
+     x_j = {1 \over n} \sum_{k=0}^{n-1} c_k \exp(2 \pi i j k /n)
+
+The symmetry of the half-complex sequence implies that only half of the
+complex numbers in the output need to be stored.  The remaining half can
+be reconstructed using the half-complex symmetry condition. This works
+for all lengths, even and odd--when the length is even the middle value
+where k=n/2 is also real.  Thus only N real numbers are required to
+store the half-complex sequence, and the transform of a real sequence
+can be stored in the same size array as the original data.
+
+   The precise storage arrangements depend on the algorithm, and are
+different for radix-2 and mixed-radix routines.  The radix-2 function
+operates in-place, which constrains the locations where each element can
+be stored.  The restriction forces real and imaginary parts to be stored
+far apart.  The mixed-radix algorithm does not have this restriction,
+and it stores the real and imaginary parts of a given term in
+neighboring locations (which is desirable for better locality of memory
+accesses).
+
+\1f
+File: gsl-ref.info,  Node: Radix-2 FFT routines for real data,  Next: Mixed-radix FFT routines for real data,  Prev: Overview of real data FFTs,  Up: Fast Fourier Transforms
+
+16.6 Radix-2 FFT routines for real data
+=======================================
+
+This section describes radix-2 FFT algorithms for real data.  They use
+the Cooley-Tukey algorithm to compute in-place FFTs for lengths which
+are a power of 2.
+
+   The radix-2 FFT functions for real data are declared in the header
+files `gsl_fft_real.h'
+
+ -- Function: int gsl_fft_real_radix2_transform (double DATA[], size_t
+          STRIDE, size_t N)
+     This function computes an in-place radix-2 FFT of length N and
+     stride STRIDE on the real array DATA.  The output is a
+     half-complex sequence, which is stored in-place.  The arrangement
+     of the half-complex terms uses the following scheme: for k < n/2
+     the real part of the k-th term is stored in location k, and the
+     corresponding imaginary part is stored in location n-k.  Terms
+     with k > n/2 can be reconstructed using the symmetry z_k =
+     z^*_{n-k}.  The terms for k=0 and k=n/2 are both purely real, and
+     count as a special case.  Their real parts are stored in locations
+     0 and n/2 respectively, while their imaginary parts which are zero
+     are not stored.
+
+     The following table shows the correspondence between the output
+     DATA and the equivalent results obtained by considering the input
+     data as a complex sequence with zero imaginary part (assuming
+     STRIDE=1),
+
+          complex[0].real    =    data[0]
+          complex[0].imag    =    0
+          complex[1].real    =    data[1]
+          complex[1].imag    =    data[n-1]
+          ...............         ................
+          complex[k].real    =    data[k]
+          complex[k].imag    =    data[n-k]
+          ...............         ................
+          complex[n/2].real  =    data[n/2]
+          complex[n/2].imag  =    0
+          ...............         ................
+          complex[k'].real   =    data[k]        k' = n - k
+          complex[k'].imag   =   -data[n-k]
+          ...............         ................
+          complex[n-1].real  =    data[1]
+          complex[n-1].imag  =   -data[n-1]
+     Note that the output data can be converted into the full complex
+     sequence using the function `gsl_fft_halfcomplex_radix2_unpack'
+     described below.
+
+   The radix-2 FFT functions for halfcomplex data are declared in the
+header file `gsl_fft_halfcomplex.h'.
+
+ -- Function: int gsl_fft_halfcomplex_radix2_inverse (double DATA[],
+          size_t STRIDE, size_t N)
+ -- Function: int gsl_fft_halfcomplex_radix2_backward (double DATA[],
+          size_t STRIDE, size_t N)
+     These functions compute the inverse or backwards in-place radix-2
+     FFT of length N and stride STRIDE on the half-complex sequence
+     DATA stored according the output scheme used by
+     `gsl_fft_real_radix2'.  The result is a real array stored in
+     natural order.
+
+ -- Function: int gsl_fft_halfcomplex_radix2_unpack (const double
+          HALFCOMPLEX_COEFFICIENT[], gsl_complex_packed_array
+          COMPLEX_COEFFICIENT, size_t STRIDE, size_t N)
+     This function converts HALFCOMPLEX_COEFFICIENT, an array of
+     half-complex coefficients as returned by
+     `gsl_fft_real_radix2_transform', into an ordinary complex array,
+     COMPLEX_COEFFICIENT.  It fills in the complex array using the
+     symmetry z_k = z_{n-k}^* to reconstruct the redundant elements.
+     The algorithm for the conversion is,
+
+          complex_coefficient[0].real
+            = halfcomplex_coefficient[0];
+          complex_coefficient[0].imag
+            = 0.0;
+
+          for (i = 1; i < n - i; i++)
+            {
+              double hc_real
+                = halfcomplex_coefficient[i*stride];
+              double hc_imag
+                = halfcomplex_coefficient[(n-i)*stride];
+              complex_coefficient[i*stride].real = hc_real;
+              complex_coefficient[i*stride].imag = hc_imag;
+              complex_coefficient[(n - i)*stride].real = hc_real;
+              complex_coefficient[(n - i)*stride].imag = -hc_imag;
+            }
+
+          if (i == n - i)
+            {
+              complex_coefficient[i*stride].real
+                = halfcomplex_coefficient[(n - 1)*stride];
+              complex_coefficient[i*stride].imag
+                = 0.0;
+            }
+
+\1f
+File: gsl-ref.info,  Node: Mixed-radix FFT routines for real data,  Next: FFT References and Further Reading,  Prev: Radix-2 FFT routines for real data,  Up: Fast Fourier Transforms
+
+16.7 Mixed-radix FFT routines for real data
+===========================================
+
+This section describes mixed-radix FFT algorithms for real data.  The
+mixed-radix functions work for FFTs of any length.  They are a
+reimplementation of the real-FFT routines in the Fortran FFTPACK library
+by Paul Swarztrauber.  The theory behind the algorithm is explained in
+the article `Fast Mixed-Radix Real Fourier Transforms' by Clive
+Temperton.  The routines here use the same indexing scheme and basic
+algorithms as FFTPACK.
+
+   The functions use the FFTPACK storage convention for half-complex
+sequences.  In this convention the half-complex transform of a real
+sequence is stored with frequencies in increasing order, starting at
+zero, with the real and imaginary parts of each frequency in neighboring
+locations.  When a value is known to be real the imaginary part is not
+stored.  The imaginary part of the zero-frequency component is never
+stored.  It is known to be zero (since the zero frequency component is
+simply the sum of the input data (all real)).  For a sequence of even
+length the imaginary part of the frequency n/2 is not stored either,
+since the symmetry z_k = z_{n-k}^* implies that this is purely real too.
+
+   The storage scheme is best shown by some examples.  The table below
+shows the output for an odd-length sequence, n=5.  The two columns give
+the correspondence between the 5 values in the half-complex sequence
+returned by `gsl_fft_real_transform', HALFCOMPLEX[] and the values
+COMPLEX[] that would be returned if the same real input sequence were
+passed to `gsl_fft_complex_backward' as a complex sequence (with
+imaginary parts set to `0'),
+
+     complex[0].real  =  halfcomplex[0]
+     complex[0].imag  =  0
+     complex[1].real  =  halfcomplex[1]
+     complex[1].imag  =  halfcomplex[2]
+     complex[2].real  =  halfcomplex[3]
+     complex[2].imag  =  halfcomplex[4]
+     complex[3].real  =  halfcomplex[3]
+     complex[3].imag  = -halfcomplex[4]
+     complex[4].real  =  halfcomplex[1]
+     complex[4].imag  = -halfcomplex[2]
+
+The upper elements of the COMPLEX array, `complex[3]' and `complex[4]'
+are filled in using the symmetry condition.  The imaginary part of the
+zero-frequency term `complex[0].imag' is known to be zero by the
+symmetry.
+
+   The next table shows the output for an even-length sequence, n=6 In
+the even case there are two values which are purely real,
+
+     complex[0].real  =  halfcomplex[0]
+     complex[0].imag  =  0
+     complex[1].real  =  halfcomplex[1]
+     complex[1].imag  =  halfcomplex[2]
+     complex[2].real  =  halfcomplex[3]
+     complex[2].imag  =  halfcomplex[4]
+     complex[3].real  =  halfcomplex[5]
+     complex[3].imag  =  0
+     complex[4].real  =  halfcomplex[3]
+     complex[4].imag  = -halfcomplex[4]
+     complex[5].real  =  halfcomplex[1]
+     complex[5].imag  = -halfcomplex[2]
+
+The upper elements of the COMPLEX array, `complex[4]' and `complex[5]'
+are filled in using the symmetry condition.  Both `complex[0].imag' and
+`complex[3].imag' are known to be zero.
+
+   All these functions are declared in the header files
+`gsl_fft_real.h' and `gsl_fft_halfcomplex.h'.
+
+ -- Function: gsl_fft_real_wavetable * gsl_fft_real_wavetable_alloc
+          (size_t N)
+ -- Function: gsl_fft_halfcomplex_wavetable *
+gsl_fft_halfcomplex_wavetable_alloc (size_t N)
+     These functions prepare trigonometric lookup tables for an FFT of
+     size n real elements.  The functions return a pointer to the newly
+     allocated struct if no errors were detected, and a null pointer in
+     the case of error.  The length N is factorized into a product of
+     subtransforms, and the factors and their trigonometric
+     coefficients are stored in the wavetable. The trigonometric
+     coefficients are computed using direct calls to `sin' and `cos',
+     for accuracy.  Recursion relations could be used to compute the
+     lookup table faster, but if an application performs many FFTs of
+     the same length then computing the wavetable is a one-off overhead
+     which does not affect the final throughput.
+
+     The wavetable structure can be used repeatedly for any transform
+     of the same length.  The table is not modified by calls to any of
+     the other FFT functions.  The appropriate type of wavetable must
+     be used for forward real or inverse half-complex transforms.
+
+ -- Function: void gsl_fft_real_wavetable_free (gsl_fft_real_wavetable
+          * WAVETABLE)
+ -- Function: void gsl_fft_halfcomplex_wavetable_free
+          (gsl_fft_halfcomplex_wavetable * WAVETABLE)
+     These functions free the memory associated with the wavetable
+     WAVETABLE. The wavetable can be freed if no further FFTs of the
+     same length will be needed.
+
+The mixed radix algorithms require additional working space to hold the
+intermediate steps of the transform,
+
+ -- Function: gsl_fft_real_workspace * gsl_fft_real_workspace_alloc
+          (size_t N)
+     This function allocates a workspace for a real transform of length
+     N.  The same workspace can be used for both forward real and
+     inverse halfcomplex transforms.
+
+ -- Function: void gsl_fft_real_workspace_free (gsl_fft_real_workspace
+          * WORKSPACE)
+     This function frees the memory associated with the workspace
+     WORKSPACE. The workspace can be freed if no further FFTs of the
+     same length will be needed.
+
+The following functions compute the transforms of real and half-complex
+data,
+
+ -- Function: int gsl_fft_real_transform (double DATA[], size_t STRIDE,
+          size_t N, const gsl_fft_real_wavetable * WAVETABLE,
+          gsl_fft_real_workspace * WORK)
+ -- Function: int gsl_fft_halfcomplex_transform (double DATA[], size_t
+          STRIDE, size_t N, const gsl_fft_halfcomplex_wavetable *
+          WAVETABLE, gsl_fft_real_workspace * WORK)
+     These functions compute the FFT of DATA, a real or half-complex
+     array of length N, using a mixed radix decimation-in-frequency
+     algorithm.  For `gsl_fft_real_transform' DATA is an array of
+     time-ordered real data.  For `gsl_fft_halfcomplex_transform' DATA
+     contains Fourier coefficients in the half-complex ordering
+     described above.  There is no restriction on the length N.
+     Efficient modules are provided for subtransforms of length 2, 3, 4
+     and 5.  Any remaining factors are computed with a slow, O(n^2),
+     general-n module.  The caller must supply a WAVETABLE containing
+     trigonometric lookup tables and a workspace WORK.
+
+ -- Function: int gsl_fft_real_unpack (const double REAL_COEFFICIENT[],
+          gsl_complex_packed_array COMPLEX_COEFFICIENT, size_t STRIDE,
+          size_t N)
+     This function converts a single real array, REAL_COEFFICIENT into
+     an equivalent complex array, COMPLEX_COEFFICIENT, (with imaginary
+     part set to zero), suitable for `gsl_fft_complex' routines.  The
+     algorithm for the conversion is simply,
+
+          for (i = 0; i < n; i++)
+            {
+              complex_coefficient[i*stride].real
+                = real_coefficient[i*stride];
+              complex_coefficient[i*stride].imag
+                = 0.0;
+            }
+
+ -- Function: int gsl_fft_halfcomplex_unpack (const double
+          HALFCOMPLEX_COEFFICIENT[], gsl_complex_packed_array
+          COMPLEX_COEFFICIENT, size_t STRIDE, size_t N)
+     This function converts HALFCOMPLEX_COEFFICIENT, an array of
+     half-complex coefficients as returned by `gsl_fft_real_transform',
+     into an ordinary complex array, COMPLEX_COEFFICIENT.  It fills in
+     the complex array using the symmetry z_k = z_{n-k}^* to
+     reconstruct the redundant elements.  The algorithm for the
+     conversion is,
+
+          complex_coefficient[0].real
+            = halfcomplex_coefficient[0];
+          complex_coefficient[0].imag
+            = 0.0;
+
+          for (i = 1; i < n - i; i++)
+            {
+              double hc_real
+                = halfcomplex_coefficient[(2 * i - 1)*stride];
+              double hc_imag
+                = halfcomplex_coefficient[(2 * i)*stride];
+              complex_coefficient[i*stride].real = hc_real;
+              complex_coefficient[i*stride].imag = hc_imag;
+              complex_coefficient[(n - i)*stride].real = hc_real;
+              complex_coefficient[(n - i)*stride].imag = -hc_imag;
+            }
+
+          if (i == n - i)
+            {
+              complex_coefficient[i*stride].real
+                = halfcomplex_coefficient[(n - 1)*stride];
+              complex_coefficient[i*stride].imag
+                = 0.0;
+            }
+
+   Here is an example program using `gsl_fft_real_transform' and
+`gsl_fft_halfcomplex_inverse'.  It generates a real signal in the shape
+of a square pulse.  The pulse is Fourier transformed to frequency
+space, and all but the lowest ten frequency components are removed from
+the array of Fourier coefficients returned by `gsl_fft_real_transform'.
+
+   The remaining Fourier coefficients are transformed back to the
+time-domain, to give a filtered version of the square pulse.  Since
+Fourier coefficients are stored using the half-complex symmetry both
+positive and negative frequencies are removed and the final filtered
+signal is also real.
+
+     #include <stdio.h>
+     #include <math.h>
+     #include <gsl/gsl_errno.h>
+     #include <gsl/gsl_fft_real.h>
+     #include <gsl/gsl_fft_halfcomplex.h>
+
+     int
+     main (void)
+     {
+       int i, n = 100;
+       double data[n];
+
+       gsl_fft_real_wavetable * real;
+       gsl_fft_halfcomplex_wavetable * hc;
+       gsl_fft_real_workspace * work;
+
+       for (i = 0; i < n; i++)
+         {
+           data[i] = 0.0;
+         }
+
+       for (i = n / 3; i < 2 * n / 3; i++)
+         {
+           data[i] = 1.0;
+         }
+
+       for (i = 0; i < n; i++)
+         {
+           printf ("%d: %e\n", i, data[i]);
+         }
+       printf ("\n");
+
+       work = gsl_fft_real_workspace_alloc (n);
+       real = gsl_fft_real_wavetable_alloc (n);
+
+       gsl_fft_real_transform (data, 1, n,
+                               real, work);
+
+       gsl_fft_real_wavetable_free (real);
+
+       for (i = 11; i < n; i++)
+         {
+           data[i] = 0;
+         }
+
+       hc = gsl_fft_halfcomplex_wavetable_alloc (n);
+
+       gsl_fft_halfcomplex_inverse (data, 1, n,
+                                    hc, work);
+       gsl_fft_halfcomplex_wavetable_free (hc);
+
+       for (i = 0; i < n; i++)
+         {
+           printf ("%d: %e\n", i, data[i]);
+         }
+
+       gsl_fft_real_workspace_free (work);
+       return 0;
+     }
+
+\1f
+File: gsl-ref.info,  Node: FFT References and Further Reading,  Prev: Mixed-radix FFT routines for real data,  Up: Fast Fourier Transforms
+
+16.8 References and Further Reading
+===================================
+
+A good starting point for learning more about the FFT is the review
+article `Fast Fourier Transforms: A Tutorial Review and A State of the
+Art' by Duhamel and Vetterli,
+
+     P. Duhamel and M. Vetterli.  Fast Fourier transforms: A tutorial
+     review and a state of the art.  `Signal Processing', 19:259-299,
+     1990.
+
+To find out about the algorithms used in the GSL routines you may want
+to consult the document `GSL FFT Algorithms' (it is included in GSL, as
+`doc/fftalgorithms.tex').  This has general information on FFTs and
+explicit derivations of the implementation for each routine.  There are
+also references to the relevant literature.  For convenience some of
+the more important references are reproduced below.
+
+There are several introductory books on the FFT with example programs,
+such as `The Fast Fourier Transform' by Brigham and `DFT/FFT and
+Convolution Algorithms' by Burrus and Parks,
+
+     E. Oran Brigham.  `The Fast Fourier Transform'.  Prentice Hall,
+     1974.
+
+     C. S. Burrus and T. W. Parks.  `DFT/FFT and Convolution
+     Algorithms'.  Wiley, 1984.
+
+Both these introductory books cover the radix-2 FFT in some detail.
+The mixed-radix algorithm at the heart of the FFTPACK routines is
+reviewed in Clive Temperton's paper,
+
+     Clive Temperton.  Self-sorting mixed-radix fast Fourier transforms.
+     `Journal of Computational Physics', 52(1):1-23, 1983.
+
+The derivation of FFTs for real-valued data is explained in the
+following two articles,
+
+     Henrik V. Sorenson, Douglas L. Jones, Michael T. Heideman, and C.
+     Sidney Burrus.  Real-valued fast Fourier transform algorithms.
+     `IEEE Transactions on Acoustics, Speech, and Signal Processing',
+     ASSP-35(6):849-863, 1987.
+
+     Clive Temperton.  Fast mixed-radix real Fourier transforms.
+     `Journal of Computational Physics', 52:340-350, 1983.
+
+In 1979 the IEEE published a compendium of carefully-reviewed Fortran
+FFT programs in `Programs for Digital Signal Processing'.  It is a
+useful reference for implementations of many different FFT algorithms,
+
+     Digital Signal Processing Committee and IEEE Acoustics, Speech,
+     and Signal Processing Committee, editors.  `Programs for Digital
+     Signal Processing'.  IEEE Press, 1979.
+
+For large-scale FFT work we recommend the use of the dedicated FFTW
+library by Frigo and Johnson.  The FFTW library is self-optimizing--it
+automatically tunes itself for each hardware platform in order to
+achieve maximum performance.  It is available under the GNU GPL.
+
+     FFTW Website, `http://www.fftw.org/'
+
+The source code for FFTPACK is available from Netlib,
+
+     FFTPACK, `http://www.netlib.org/fftpack/'
+
+\1f
+File: gsl-ref.info,  Node: Numerical Integration,  Next: Random Number Generation,  Prev: Fast Fourier Transforms,  Up: Top
+
+17 Numerical Integration
+************************
+
+This chapter describes routines for performing numerical integration
+(quadrature) of a function in one dimension.  There are routines for
+adaptive and non-adaptive integration of general functions, with
+specialised routines for specific cases.  These include integration over
+infinite and semi-infinite ranges, singular integrals, including
+logarithmic singularities, computation of Cauchy principal values and
+oscillatory integrals.  The library reimplements the algorithms used in
+QUADPACK, a numerical integration package written by Piessens, de
+Doncker-Kapenga, Ueberhuber and Kahaner.  Fortran code for QUADPACK is
+available on Netlib.  Also included are non-adaptive, fixed-order
+Gauss-Legendre integration routines with high precision coefficients by
+Pavel Holoborodko.
+
+   The functions described in this chapter are declared in the header
+file `gsl_integration.h'.
+
+* Menu:
+
+* Numerical Integration Introduction::
+* QNG non-adaptive Gauss-Kronrod integration::
+* QAG adaptive integration::
+* QAGS adaptive integration with singularities::
+* QAGP adaptive integration with known singular points::
+* QAGI adaptive integration on infinite intervals::
+* QAWC adaptive integration for Cauchy principal values::
+* QAWS adaptive integration for singular functions::
+* QAWO adaptive integration for oscillatory functions::
+* QAWF adaptive integration for Fourier integrals::
+* CQUAD doubly-adaptive integration::
+* Fixed order Gauss-Legendre integration::
+* Numerical integration error codes::
+* Numerical integration examples::
+* Numerical integration References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Numerical Integration Introduction,  Next: QNG non-adaptive Gauss-Kronrod integration,  Up: Numerical Integration
+
+17.1 Introduction
+=================
+
+Each algorithm computes an approximation to a definite integral of the
+form,
+
+     I = \int_a^b f(x) w(x) dx
+
+where w(x) is a weight function (for general integrands w(x)=1).  The
+user provides absolute and relative error bounds (epsabs, epsrel) which
+specify the following accuracy requirement,
+
+     |RESULT - I|  <= max(epsabs, epsrel |I|)
+
+where RESULT is the numerical approximation obtained by the algorithm.
+The algorithms attempt to estimate the absolute error ABSERR = |RESULT
+- I| in such a way that the following inequality holds,
+
+     |RESULT - I| <= ABSERR <= max(epsabs, epsrel |I|)
+
+In short, the routines return the first approximation which has an
+absolute error smaller than epsabs or a relative error smaller than
+epsrel.
+
+   Note that this is an either-or constraint, not simultaneous.  To
+compute to a specified absolute error, set epsrel to zero.  To compute
+to a specified relative error, set epsabs to zero.  The routines will
+fail to converge if the error bounds are too stringent, but always
+return the best approximation obtained up to that stage.
+
+   The algorithms in QUADPACK use a naming convention based on the
+following letters,
+
+     `Q' - quadrature routine
+
+     `N' - non-adaptive integrator
+     `A' - adaptive integrator
+
+     `G' - general integrand (user-defined)
+     `W' - weight function with integrand
+
+     `S' - singularities can be more readily integrated
+     `P' - points of special difficulty can be supplied
+     `I' - infinite range of integration
+     `O' - oscillatory weight function, cos or sin
+     `F' - Fourier integral
+     `C' - Cauchy principal value
+
+The algorithms are built on pairs of quadrature rules, a higher order
+rule and a lower order rule.  The higher order rule is used to compute
+the best approximation to an integral over a small range.  The
+difference between the results of the higher order rule and the lower
+order rule gives an estimate of the error in the approximation.
+
+* Menu:
+
+* Integrands without weight functions::
+* Integrands with weight functions::
+* Integrands with singular weight functions::
+
+\1f
+File: gsl-ref.info,  Node: Integrands without weight functions,  Next: Integrands with weight functions,  Up: Numerical Integration Introduction
+
+17.1.1 Integrands without weight functions
+------------------------------------------
+
+The algorithms for general functions (without a weight function) are
+based on Gauss-Kronrod rules.
+
+   A Gauss-Kronrod rule begins with a classical Gaussian quadrature
+rule of order m.  This is extended with additional points between each
+of the abscissae to give a higher order Kronrod rule of order 2m+1.
+The Kronrod rule is efficient because it reuses existing function
+evaluations from the Gaussian rule.
+
+   The higher order Kronrod rule is used as the best approximation to
+the integral, and the difference between the two rules is used as an
+estimate of the error in the approximation.
+
+\1f
+File: gsl-ref.info,  Node: Integrands with weight functions,  Next: Integrands with singular weight functions,  Prev: Integrands without weight functions,  Up: Numerical Integration Introduction
+
+17.1.2 Integrands with weight functions
+---------------------------------------
+
+For integrands with weight functions the algorithms use Clenshaw-Curtis
+quadrature rules.
+
+   A Clenshaw-Curtis rule begins with an n-th order Chebyshev
+polynomial approximation to the integrand.  This polynomial can be
+integrated exactly to give an approximation to the integral of the
+original function.  The Chebyshev expansion can be extended to higher
+orders to improve the approximation and provide an estimate of the
+error.
+
+\1f
+File: gsl-ref.info,  Node: Integrands with singular weight functions,  Prev: Integrands with weight functions,  Up: Numerical Integration Introduction
+
+17.1.3 Integrands with singular weight functions
+------------------------------------------------
+
+The presence of singularities (or other behavior) in the integrand can
+cause slow convergence in the Chebyshev approximation.  The modified
+Clenshaw-Curtis rules used in QUADPACK separate out several common
+weight functions which cause slow convergence.
+
+   These weight functions are integrated analytically against the
+Chebyshev polynomials to precompute "modified Chebyshev moments".
+Combining the moments with the Chebyshev approximation to the function
+gives the desired integral.  The use of analytic integration for the
+singular part of the function allows exact cancellations and
+substantially improves the overall convergence behavior of the
+integration.
+
+\1f
+File: gsl-ref.info,  Node: QNG non-adaptive Gauss-Kronrod integration,  Next: QAG adaptive integration,  Prev: Numerical Integration Introduction,  Up: Numerical Integration
+
+17.2 QNG non-adaptive Gauss-Kronrod integration
+===============================================
+
+The QNG algorithm is a non-adaptive procedure which uses fixed
+Gauss-Kronrod-Patterson abscissae to sample the integrand at a maximum
+of 87 points.  It is provided for fast integration of smooth functions.
+
+ -- Function: int gsl_integration_qng (const gsl_function * F, double
+          A, double B, double EPSABS, double EPSREL, double * RESULT,
+          double * ABSERR, size_t * NEVAL)
+     This function applies the Gauss-Kronrod 10-point, 21-point,
+     43-point and 87-point integration rules in succession until an
+     estimate of the integral of f over (a,b) is achieved within the
+     desired absolute and relative error limits, EPSABS and EPSREL.  The
+     function returns the final approximation, RESULT, an estimate of
+     the absolute error, ABSERR and the number of function evaluations
+     used, NEVAL.  The Gauss-Kronrod rules are designed in such a way
+     that each rule uses all the results of its predecessors, in order
+     to minimize the total number of function evaluations.
+
+\1f
+File: gsl-ref.info,  Node: QAG adaptive integration,  Next: QAGS adaptive integration with singularities,  Prev: QNG non-adaptive Gauss-Kronrod integration,  Up: Numerical Integration
+
+17.3 QAG adaptive integration
+=============================
+
+The QAG algorithm is a simple adaptive integration procedure.  The
+integration region is divided into subintervals, and on each iteration
+the subinterval with the largest estimated error is bisected.  This
+reduces the overall error rapidly, as the subintervals become
+concentrated around local difficulties in the integrand.  These
+subintervals are managed by a `gsl_integration_workspace' struct, which
+handles the memory for the subinterval ranges, results and error
+estimates.
+
+ -- Function: gsl_integration_workspace *
+gsl_integration_workspace_alloc (size_t N)
+     This function allocates a workspace sufficient to hold N double
+     precision intervals, their integration results and error estimates.
+
+ -- Function: void gsl_integration_workspace_free
+          (gsl_integration_workspace * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: int gsl_integration_qag (const gsl_function * F, double
+          A, double B, double EPSABS, double EPSREL, size_t LIMIT, int
+          KEY, gsl_integration_workspace * WORKSPACE, double * RESULT,
+          double * ABSERR)
+     This function applies an integration rule adaptively until an
+     estimate of the integral of f over (a,b) is achieved within the
+     desired absolute and relative error limits, EPSABS and EPSREL.
+     The function returns the final approximation, RESULT, and an
+     estimate of the absolute error, ABSERR.  The integration rule is
+     determined by the value of KEY, which should be chosen from the
+     following symbolic names,
+
+          GSL_INTEG_GAUSS15  (key = 1)
+          GSL_INTEG_GAUSS21  (key = 2)
+          GSL_INTEG_GAUSS31  (key = 3)
+          GSL_INTEG_GAUSS41  (key = 4)
+          GSL_INTEG_GAUSS51  (key = 5)
+          GSL_INTEG_GAUSS61  (key = 6)
+
+     corresponding to the 15, 21, 31, 41, 51 and 61 point Gauss-Kronrod
+     rules.  The higher-order rules give better accuracy for smooth
+     functions, while lower-order rules save time when the function
+     contains local difficulties, such as discontinuities.
+
+     On each iteration the adaptive integration strategy bisects the
+     interval with the largest error estimate.  The subintervals and
+     their results are stored in the memory provided by WORKSPACE.  The
+     maximum number of subintervals is given by LIMIT, which may not
+     exceed the allocated size of the workspace.
+
+\1f
+File: gsl-ref.info,  Node: QAGS adaptive integration with singularities,  Next: QAGP adaptive integration with known singular points,  Prev: QAG adaptive integration,  Up: Numerical Integration
+
+17.4 QAGS adaptive integration with singularities
+=================================================
+
+The presence of an integrable singularity in the integration region
+causes an adaptive routine to concentrate new subintervals around the
+singularity.  As the subintervals decrease in size the successive
+approximations to the integral converge in a limiting fashion.  This
+approach to the limit can be accelerated using an extrapolation
+procedure.  The QAGS algorithm combines adaptive bisection with the Wynn
+epsilon-algorithm to speed up the integration of many types of
+integrable singularities.
+
+ -- Function: int gsl_integration_qags (const gsl_function * F, double
+          A, double B, double EPSABS, double EPSREL, size_t LIMIT,
+          gsl_integration_workspace * WORKSPACE, double * RESULT,
+          double * ABSERR)
+     This function applies the Gauss-Kronrod 21-point integration rule
+     adaptively until an estimate of the integral of f over (a,b) is
+     achieved within the desired absolute and relative error limits,
+     EPSABS and EPSREL.  The results are extrapolated using the
+     epsilon-algorithm, which accelerates the convergence of the
+     integral in the presence of discontinuities and integrable
+     singularities.  The function returns the final approximation from
+     the extrapolation, RESULT, and an estimate of the absolute error,
+     ABSERR.  The subintervals and their results are stored in the
+     memory provided by WORKSPACE.  The maximum number of subintervals
+     is given by LIMIT, which may not exceed the allocated size of the
+     workspace.
+
+
+\1f
+File: gsl-ref.info,  Node: QAGP adaptive integration with known singular points,  Next: QAGI adaptive integration on infinite intervals,  Prev: QAGS adaptive integration with singularities,  Up: Numerical Integration
+
+17.5 QAGP adaptive integration with known singular points
+=========================================================
+
+ -- Function: int gsl_integration_qagp (const gsl_function * F, double
+          * PTS, size_t NPTS, double EPSABS, double EPSREL, size_t
+          LIMIT, gsl_integration_workspace * WORKSPACE, double *
+          RESULT, double * ABSERR)
+     This function applies the adaptive integration algorithm QAGS
+     taking account of the user-supplied locations of singular points.
+     The array PTS of length NPTS should contain the endpoints of the
+     integration ranges defined by the integration region and locations
+     of the singularities.  For example, to integrate over the region
+     (a,b) with break-points at x_1, x_2, x_3 (where a < x_1 < x_2 <
+     x_3 < b) the following PTS array should be used
+
+          pts[0] = a
+          pts[1] = x_1
+          pts[2] = x_2
+          pts[3] = x_3
+          pts[4] = b
+
+     with NPTS = 5.
+
+     If you know the locations of the singular points in the integration
+     region then this routine will be faster than `QAGS'.
+
+
+\1f
+File: gsl-ref.info,  Node: QAGI adaptive integration on infinite intervals,  Next: QAWC adaptive integration for Cauchy principal values,  Prev: QAGP adaptive integration with known singular points,  Up: Numerical Integration
+
+17.6 QAGI adaptive integration on infinite intervals
+====================================================
+
+ -- Function: int gsl_integration_qagi (gsl_function * F, double
+          EPSABS, double EPSREL, size_t LIMIT,
+          gsl_integration_workspace * WORKSPACE, double * RESULT,
+          double * ABSERR)
+     This function computes the integral of the function F over the
+     infinite interval (-\infty,+\infty).  The integral is mapped onto
+     the semi-open interval (0,1] using the transformation x = (1-t)/t,
+
+          \int_{-\infty}^{+\infty} dx f(x) =
+               \int_0^1 dt (f((1-t)/t) + f((-1+t)/t))/t^2.
+
+     It is then integrated using the QAGS algorithm.  The normal
+     21-point Gauss-Kronrod rule of QAGS is replaced by a 15-point
+     rule, because the transformation can generate an integrable
+     singularity at the origin.  In this case a lower-order rule is
+     more efficient.
+
+ -- Function: int gsl_integration_qagiu (gsl_function * F, double A,
+          double EPSABS, double EPSREL, size_t LIMIT,
+          gsl_integration_workspace * WORKSPACE, double * RESULT,
+          double * ABSERR)
+     This function computes the integral of the function F over the
+     semi-infinite interval (a,+\infty).  The integral is mapped onto
+     the semi-open interval (0,1] using the transformation x = a +
+     (1-t)/t,
+
+          \int_{a}^{+\infty} dx f(x) =
+               \int_0^1 dt f(a + (1-t)/t)/t^2
+
+     and then integrated using the QAGS algorithm.
+
+ -- Function: int gsl_integration_qagil (gsl_function * F, double B,
+          double EPSABS, double EPSREL, size_t LIMIT,
+          gsl_integration_workspace * WORKSPACE, double * RESULT,
+          double * ABSERR)
+     This function computes the integral of the function F over the
+     semi-infinite interval (-\infty,b).  The integral is mapped onto
+     the semi-open interval (0,1] using the transformation x = b -
+     (1-t)/t,
+
+          \int_{-\infty}^{b} dx f(x) =
+               \int_0^1 dt f(b - (1-t)/t)/t^2
+
+     and then integrated using the QAGS algorithm.
+
+\1f
+File: gsl-ref.info,  Node: QAWC adaptive integration for Cauchy principal values,  Next: QAWS adaptive integration for singular functions,  Prev: QAGI adaptive integration on infinite intervals,  Up: Numerical Integration
+
+17.7 QAWC adaptive integration for Cauchy principal values
+==========================================================
+
+ -- Function: int gsl_integration_qawc (gsl_function * F, double A,
+          double B, double C, double EPSABS, double EPSREL, size_t
+          LIMIT, gsl_integration_workspace * WORKSPACE, double *
+          RESULT, double * ABSERR)
+     This function computes the Cauchy principal value of the integral
+     of f over (a,b), with a singularity at C,
+
+          I = \int_a^b dx f(x) / (x - c)
+
+     The adaptive bisection algorithm of QAG is used, with
+     modifications to ensure that subdivisions do not occur at the
+     singular point x = c.  When a subinterval contains the point x = c
+     or is close to it then a special 25-point modified Clenshaw-Curtis
+     rule is used to control the singularity.  Further away from the
+     singularity the algorithm uses an ordinary 15-point Gauss-Kronrod
+     integration rule.
+
+
+\1f
+File: gsl-ref.info,  Node: QAWS adaptive integration for singular functions,  Next: QAWO adaptive integration for oscillatory functions,  Prev: QAWC adaptive integration for Cauchy principal values,  Up: Numerical Integration
+
+17.8 QAWS adaptive integration for singular functions
+=====================================================
+
+The QAWS algorithm is designed for integrands with algebraic-logarithmic
+singularities at the end-points of an integration region.  In order to
+work efficiently the algorithm requires a precomputed table of
+Chebyshev moments.
+
+ -- Function: gsl_integration_qaws_table *
+gsl_integration_qaws_table_alloc (double ALPHA, double BETA, int MU,
+          int NU)
+     This function allocates space for a `gsl_integration_qaws_table'
+     struct describing a singular weight function W(x) with the
+     parameters (\alpha, \beta, \mu, \nu),
+
+          W(x) = (x-a)^alpha (b-x)^beta log^mu (x-a) log^nu (b-x)
+
+     where \alpha > -1, \beta > -1, and \mu = 0, 1, \nu = 0, 1.  The
+     weight function can take four different forms depending on the
+     values of \mu and \nu,
+
+          W(x) = (x-a)^alpha (b-x)^beta                   (mu = 0, nu = 0)
+          W(x) = (x-a)^alpha (b-x)^beta log(x-a)          (mu = 1, nu = 0)
+          W(x) = (x-a)^alpha (b-x)^beta log(b-x)          (mu = 0, nu = 1)
+          W(x) = (x-a)^alpha (b-x)^beta log(x-a) log(b-x) (mu = 1, nu = 1)
+
+     The singular points (a,b) do not have to be specified until the
+     integral is computed, where they are the endpoints of the
+     integration range.
+
+     The function returns a pointer to the newly allocated table
+     `gsl_integration_qaws_table' if no errors were detected, and 0 in
+     the case of error.
+
+ -- Function: int gsl_integration_qaws_table_set
+          (gsl_integration_qaws_table * T, double ALPHA, double BETA,
+          int MU, int NU)
+     This function modifies the parameters (\alpha, \beta, \mu, \nu) of
+     an existing `gsl_integration_qaws_table' struct T.
+
+ -- Function: void gsl_integration_qaws_table_free
+          (gsl_integration_qaws_table * T)
+     This function frees all the memory associated with the
+     `gsl_integration_qaws_table' struct T.
+
+ -- Function: int gsl_integration_qaws (gsl_function * F, const double
+          A, const double B, gsl_integration_qaws_table * T, const
+          double EPSABS, const double EPSREL, const size_t LIMIT,
+          gsl_integration_workspace * WORKSPACE, double * RESULT,
+          double * ABSERR)
+     This function computes the integral of the function f(x) over the
+     interval (a,b) with the singular weight function (x-a)^\alpha
+     (b-x)^\beta \log^\mu (x-a) \log^\nu (b-x).  The parameters of the
+     weight function (\alpha, \beta, \mu, \nu) are taken from the table
+     T.  The integral is,
+
+          I = \int_a^b dx f(x) (x-a)^alpha (b-x)^beta log^mu (x-a) log^nu (b-x).
+
+     The adaptive bisection algorithm of QAG is used.  When a
+     subinterval contains one of the endpoints then a special 25-point
+     modified Clenshaw-Curtis rule is used to control the
+     singularities.  For subintervals which do not include the
+     endpoints an ordinary 15-point Gauss-Kronrod integration rule is
+     used.
+
+
+\1f
+File: gsl-ref.info,  Node: QAWO adaptive integration for oscillatory functions,  Next: QAWF adaptive integration for Fourier integrals,  Prev: QAWS adaptive integration for singular functions,  Up: Numerical Integration
+
+17.9 QAWO adaptive integration for oscillatory functions
+========================================================
+
+The QAWO algorithm is designed for integrands with an oscillatory
+factor, \sin(\omega x) or \cos(\omega x).  In order to work efficiently
+the algorithm requires a table of Chebyshev moments which must be
+pre-computed with calls to the functions below.
+
+ -- Function: gsl_integration_qawo_table *
+gsl_integration_qawo_table_alloc (double OMEGA, double L, enum
+          gsl_integration_qawo_enum SINE, size_t N)
+     This function allocates space for a `gsl_integration_qawo_table'
+     struct and its associated workspace describing a sine or cosine
+     weight function W(x) with the parameters (\omega, L),
+
+          W(x) = sin(omega x)
+          W(x) = cos(omega x)
+
+     The parameter L must be the length of the interval over which the
+     function will be integrated L = b - a.  The choice of sine or
+     cosine is made with the parameter SINE which should be chosen from
+     one of the two following symbolic values:
+
+          GSL_INTEG_COSINE
+          GSL_INTEG_SINE
+
+     The `gsl_integration_qawo_table' is a table of the trigonometric
+     coefficients required in the integration process.  The parameter N
+     determines the number of levels of coefficients that are computed.
+     Each level corresponds to one bisection of the interval L, so that
+     N levels are sufficient for subintervals down to the length L/2^n.
+     The integration routine `gsl_integration_qawo' returns the error
+     `GSL_ETABLE' if the number of levels is insufficient for the
+     requested accuracy.
+
+
+ -- Function: int gsl_integration_qawo_table_set
+          (gsl_integration_qawo_table * T, double OMEGA, double L, enum
+          gsl_integration_qawo_enum SINE)
+     This function changes the parameters OMEGA, L and SINE of the
+     existing workspace T.
+
+ -- Function: int gsl_integration_qawo_table_set_length
+          (gsl_integration_qawo_table * T, double L)
+     This function allows the length parameter L of the workspace T to
+     be changed.
+
+ -- Function: void gsl_integration_qawo_table_free
+          (gsl_integration_qawo_table * T)
+     This function frees all the memory associated with the workspace T.
+
+ -- Function: int gsl_integration_qawo (gsl_function * F, const double
+          A, const double EPSABS, const double EPSREL, const size_t
+          LIMIT, gsl_integration_workspace * WORKSPACE,
+          gsl_integration_qawo_table * WF, double * RESULT, double *
+          ABSERR)
+     This function uses an adaptive algorithm to compute the integral of
+     f over (a,b) with the weight function \sin(\omega x) or
+     \cos(\omega x) defined by the table WF,
+
+          I = \int_a^b dx f(x) sin(omega x)
+          I = \int_a^b dx f(x) cos(omega x)
+
+     The results are extrapolated using the epsilon-algorithm to
+     accelerate the convergence of the integral.  The function returns
+     the final approximation from the extrapolation, RESULT, and an
+     estimate of the absolute error, ABSERR.  The subintervals and
+     their results are stored in the memory provided by WORKSPACE.  The
+     maximum number of subintervals is given by LIMIT, which may not
+     exceed the allocated size of the workspace.
+
+     Those subintervals with "large" widths d where d\omega > 4 are
+     computed using a 25-point Clenshaw-Curtis integration rule, which
+     handles the oscillatory behavior.  Subintervals with a "small"
+     widths where d\omega < 4 are computed using a 15-point
+     Gauss-Kronrod integration.
+
+
+\1f
+File: gsl-ref.info,  Node: QAWF adaptive integration for Fourier integrals,  Next: CQUAD doubly-adaptive integration,  Prev: QAWO adaptive integration for oscillatory functions,  Up: Numerical Integration
+
+17.10 QAWF adaptive integration for Fourier integrals
+=====================================================
+
+ -- Function: int gsl_integration_qawf (gsl_function * F, const double
+          A, const double EPSABS, const size_t LIMIT,
+          gsl_integration_workspace * WORKSPACE,
+          gsl_integration_workspace * CYCLE_WORKSPACE,
+          gsl_integration_qawo_table * WF, double * RESULT, double *
+          ABSERR)
+     This function attempts to compute a Fourier integral of the
+     function F over the semi-infinite interval [a,+\infty).
+
+          I = \int_a^{+\infty} dx f(x) sin(omega x)
+          I = \int_a^{+\infty} dx f(x) cos(omega x)
+
+     The parameter \omega and choice of \sin or \cos is taken from the
+     table WF (the length L can take any value, since it is overridden
+     by this function to a value appropriate for the Fourier
+     integration).  The integral is computed using the QAWO algorithm
+     over each of the subintervals,
+
+          C_1 = [a, a + c]
+          C_2 = [a + c, a + 2 c]
+          ... = ...
+          C_k = [a + (k-1) c, a + k c]
+
+     where c = (2 floor(|\omega|) + 1) \pi/|\omega|.  The width c is
+     chosen to cover an odd number of periods so that the contributions
+     from the intervals alternate in sign and are monotonically
+     decreasing when F is positive and monotonically decreasing.  The
+     sum of this sequence of contributions is accelerated using the
+     epsilon-algorithm.
+
+     This function works to an overall absolute tolerance of ABSERR.
+     The following strategy is used: on each interval C_k the algorithm
+     tries to achieve the tolerance
+
+          TOL_k = u_k abserr
+
+     where u_k = (1 - p)p^{k-1} and p = 9/10.  The sum of the geometric
+     series of contributions from each interval gives an overall
+     tolerance of ABSERR.
+
+     If the integration of a subinterval leads to difficulties then the
+     accuracy requirement for subsequent intervals is relaxed,
+
+          TOL_k = u_k max(abserr, max_{i<k}{E_i})
+
+     where E_k is the estimated error on the interval C_k.
+
+     The subintervals and their results are stored in the memory
+     provided by WORKSPACE.  The maximum number of subintervals is
+     given by LIMIT, which may not exceed the allocated size of the
+     workspace.  The integration over each subinterval uses the memory
+     provided by CYCLE_WORKSPACE as workspace for the QAWO algorithm.
+
+
+\1f
+File: gsl-ref.info,  Node: CQUAD doubly-adaptive integration,  Next: Fixed order Gauss-Legendre integration,  Prev: QAWF adaptive integration for Fourier integrals,  Up: Numerical Integration
+
+17.11 CQUAD doubly-adaptive integration
+=======================================
+
+CQUAD is a new doubly-adaptive general-purpose quadrature routine which
+can handle most types of singularities, non-numerical function values
+such as `Inf' or `NaN', as well as some divergent integrals. It
+generally requires more function evaluations than the integration
+routines in QUADPACK, yet fails less often for difficult integrands.
+
+   The underlying algorithm uses a doubly-adaptive scheme in which
+Clenshaw-Curtis quadrature rules of increasing degree are used to
+compute the integral in each interval. The L_2-norm of the difference
+between the underlying interpolatory polynomials of two successive
+rules is used as an error estimate. The interval is subdivided if the
+difference between two successive rules is too large or a rule of
+maximum degree has been reached.
+
+ -- Function: gsl_integration_cquad_workspace *
+gsl_integration_cquad_workspace_alloc (size_t N)
+     This function allocates a workspace sufficient to hold the data for
+     N intervals. The number N is not the maximum number of intervals
+     that will be evaluated. If the workspace is full, intervals with
+     smaller error estimates will be discarded. A minimum of 3
+     intervals is required and or most functions, a workspace of size
+     100 is sufficient.
+
+ -- Function: void gsl_integration_cquad_workspace_free
+          (gsl_integration_cquad_workspace * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: int gsl_integration_cquad (const gsl_function * F, double
+          A, double B, double EPSABS, double EPSREL,
+          gsl_integration_cquad_workspace * WORKSPACE, double * RESULT,
+          double * ABSERR, size_t * NEVALS)
+     This function computes the integral of f over (a,b) within the
+     desired absolute and relative error limits, EPSABS and EPSREL
+     using the CQUAD algorithm.  The function returns the final
+     approximation, RESULT, an estimate of the absolute error, ABSERR,
+     and the number of function evaluations required, NEVALS.
+
+     The CQUAD algorithm divides the integration region into
+     subintervals, and in each iteration, the subinterval with the
+     largest estimated error is processed.  The algorithm uses
+     Clenshaw-Curits quadrature rules of degree 4, 8, 16 and 32 over 5,
+     9, 17 and 33 nodes respectively. Each interval is initialized with
+     the lowest-degree rule. When an interval is processed, the
+     next-higher degree rule is evaluated and an error estimate is
+     computed based on the L_2-norm of the difference between the
+     underlying interpolating polynomials of both rules. If the
+     highest-degree rule has already been used, or the interpolatory
+     polynomials differ significantly, the interval is bisected.
+
+     The subintervals and their results are stored in the memory
+     provided by WORKSPACE. If the error estimate or the number of
+     function evaluations is not needed, the pointers ABSERR and NEVALS
+     can be set to `NULL'.
+
+\1f
+File: gsl-ref.info,  Node: Fixed order Gauss-Legendre integration,  Next: Numerical integration error codes,  Prev: CQUAD doubly-adaptive integration,  Up: Numerical Integration
+
+17.12 Gauss-Legendre integration
+================================
+
+The fixed-order Gauss-Legendre integration routines are provided for
+fast integration of smooth functions with known polynomial order.  The
+n-point Gauss-Legendre rule is exact for polynomials of order 2*n-1 or
+less.  For example, these rules are useful when integrating basis
+functions to form mass matrices for the Galerkin method.  Unlike other
+numerical integration routines within the library, these routines do
+not accept absolute or relative error bounds.
+
+ -- Function: gsl_integration_glfixed_table *
+gsl_integration_glfixed_table_alloc (size_t N)
+     This function determines the Gauss-Legendre abscissae and weights
+     necessary for an n-point fixed order integration scheme.  If
+     possible, high precision precomputed coefficients are used.  If
+     precomputed weights are not available, lower precision
+     coefficients are computed on the fly.
+
+ -- Function: double gsl_integration_glfixed (const gsl_function * F,
+          double A, double B, const gsl_integration_glfixed_table * T)
+     This function applies the Gauss-Legendre integration rule
+     contained in table T and returns the result.
+
+ -- Function: int gsl_integration_glfixed_point (double A, double B,
+          size_t I, double * XI, double * WI, const
+          gsl_integration_glfixed_table * T)
+     For I in [0, ..., t->n - 1], this function obtains the I-th
+     Gauss-Legendre point XI and weight WI on the interval [A,B].  The
+     points and weights are ordered by increasing point value.  A
+     function f may be integrated on [A,B] by summing wi * f(xi) over I.
+
+ -- Function: void gsl_integration_glfixed_table_free
+          (gsl_integration_glfixed_table * T)
+     This function frees the memory associated with the table T.
+
+\1f
+File: gsl-ref.info,  Node: Numerical integration error codes,  Next: Numerical integration examples,  Prev: Fixed order Gauss-Legendre integration,  Up: Numerical Integration
+
+17.13 Error codes
+=================
+
+In addition to the standard error codes for invalid arguments the
+functions can return the following values,
+
+`GSL_EMAXITER'
+     the maximum number of subdivisions was exceeded.
+
+`GSL_EROUND'
+     cannot reach tolerance because of roundoff error, or roundoff
+     error was detected in the extrapolation table.
+
+`GSL_ESING'
+     a non-integrable singularity or other bad integrand behavior was
+     found in the integration interval.
+
+`GSL_EDIVERGE'
+     the integral is divergent, or too slowly convergent to be
+     integrated numerically.
+
+\1f
+File: gsl-ref.info,  Node: Numerical integration examples,  Next: Numerical integration References and Further Reading,  Prev: Numerical integration error codes,  Up: Numerical Integration
+
+17.14 Examples
+==============
+
+The integrator `QAGS' will handle a large class of definite integrals.
+For example, consider the following integral, which has an
+algebraic-logarithmic singularity at the origin,
+
+     \int_0^1 x^{-1/2} log(x) dx = -4
+
+The program below computes this integral to a relative accuracy bound of
+`1e-7'.
+
+     #include <stdio.h>
+     #include <math.h>
+     #include <gsl/gsl_integration.h>
+
+     double f (double x, void * params) {
+       double alpha = *(double *) params;
+       double f = log(alpha*x) / sqrt(x);
+       return f;
+     }
+
+     int
+     main (void)
+     {
+       gsl_integration_workspace * w
+         = gsl_integration_workspace_alloc (1000);
+
+       double result, error;
+       double expected = -4.0;
+       double alpha = 1.0;
+
+       gsl_function F;
+       F.function = &f;
+       F.params = &alpha;
+
+       gsl_integration_qags (&F, 0, 1, 0, 1e-7, 1000,
+                             w, &result, &error);
+
+       printf ("result          = % .18f\n", result);
+       printf ("exact result    = % .18f\n", expected);
+       printf ("estimated error = % .18f\n", error);
+       printf ("actual error    = % .18f\n", result - expected);
+       printf ("intervals =  %d\n", w->size);
+
+       gsl_integration_workspace_free (w);
+
+       return 0;
+     }
+
+The results below show that the desired accuracy is achieved after 8
+subdivisions.
+
+     $ ./a.out
+     result          = -3.999999999999973799
+     exact result    = -4.000000000000000000
+     estimated error =  0.000000000000246025
+     actual error    =  0.000000000000026201
+     intervals =  8
+
+In fact, the extrapolation procedure used by `QAGS' produces an
+accuracy of almost twice as many digits.  The error estimate returned by
+the extrapolation procedure is larger than the actual error, giving a
+margin of safety of one order of magnitude.
+
+\1f
+File: gsl-ref.info,  Node: Numerical integration References and Further Reading,  Prev: Numerical integration examples,  Up: Numerical Integration
+
+17.15 References and Further Reading
+====================================
+
+The following book is the definitive reference for QUADPACK, and was
+written by the original authors.  It provides descriptions of the
+algorithms, program listings, test programs and examples.  It also
+includes useful advice on numerical integration and many references to
+the numerical integration literature used in developing QUADPACK.
+
+     R. Piessens, E. de Doncker-Kapenga, C.W. Ueberhuber, D.K. Kahaner.
+     `QUADPACK A subroutine package for automatic integration' Springer
+     Verlag, 1983.
+
+The CQUAD integration algorithm is described in the following paper:
+
+     P. Gonnet, "Increasing the Reliability of Adaptive Quadrature Using
+     Explicit Interpolants", `ACM Transactions on Mathematical
+     Software', Volume 37 (2010), Issue 3, Article 26.
+
+\1f
+File: gsl-ref.info,  Node: Random Number Generation,  Next: Quasi-Random Sequences,  Prev: Numerical Integration,  Up: Top
+
+18 Random Number Generation
+***************************
+
+The library provides a large collection of random number generators
+which can be accessed through a uniform interface.  Environment
+variables allow you to select different generators and seeds at runtime,
+so that you can easily switch between generators without needing to
+recompile your program.  Each instance of a generator keeps track of its
+own state, allowing the generators to be used in multi-threaded
+programs.  Additional functions are available for transforming uniform
+random numbers into samples from continuous or discrete probability
+distributions such as the Gaussian, log-normal or Poisson distributions.
+
+   These functions are declared in the header file `gsl_rng.h'.
+
+* Menu:
+
+* General comments on random numbers::
+* The Random Number Generator Interface::
+* Random number generator initialization::
+* Sampling from a random number generator::
+* Auxiliary random number generator functions::
+* Random number environment variables::
+* Copying random number generator state::
+* Reading and writing random number generator state::
+* Random number generator algorithms::
+* Unix random number generators::
+* Other random number generators::
+* Random Number Generator Performance::
+* Random Number Generator Examples::
+* Random Number References and Further Reading::
+* Random Number Acknowledgements::
+
+\1f
+File: gsl-ref.info,  Node: General comments on random numbers,  Next: The Random Number Generator Interface,  Up: Random Number Generation
+
+18.1 General comments on random numbers
+=======================================
+
+In 1988, Park and Miller wrote a paper entitled "Random number
+generators: good ones are hard to find." [Commun. ACM, 31, 1192-1201].
+Fortunately, some excellent random number generators are available,
+though poor ones are still in common use.  You may be happy with the
+system-supplied random number generator on your computer, but you should
+be aware that as computers get faster, requirements on random number
+generators increase.  Nowadays, a simulation that calls a random number
+generator millions of times can often finish before you can make it down
+the hall to the coffee machine and back.
+
+   A very nice review of random number generators was written by Pierre
+L'Ecuyer, as Chapter 4 of the book: Handbook on Simulation, Jerry Banks,
+ed. (Wiley, 1997).  The chapter is available in postscript from
+L'Ecuyer's ftp site (see references).  Knuth's volume on Seminumerical
+Algorithms (originally published in 1968) devotes 170 pages to random
+number generators, and has recently been updated in its 3rd edition
+(1997).  It is brilliant, a classic.  If you don't own it, you should
+stop reading right now, run to the nearest bookstore, and buy it.
+
+   A good random number generator will satisfy both theoretical and
+statistical properties.  Theoretical properties are often hard to obtain
+(they require real math!), but one prefers a random number generator
+with a long period, low serial correlation, and a tendency _not_ to
+"fall mainly on the planes."  Statistical tests are performed with
+numerical simulations.  Generally, a random number generator is used to
+estimate some quantity for which the theory of probability provides an
+exact answer.  Comparison to this exact answer provides a measure of
+"randomness".
+
+\1f
+File: gsl-ref.info,  Node: The Random Number Generator Interface,  Next: Random number generator initialization,  Prev: General comments on random numbers,  Up: Random Number Generation
+
+18.2 The Random Number Generator Interface
+==========================================
+
+It is important to remember that a random number generator is not a
+"real" function like sine or cosine.  Unlike real functions, successive
+calls to a random number generator yield different return values.  Of
+course that is just what you want for a random number generator, but to
+achieve this effect, the generator must keep track of some kind of
+"state" variable.  Sometimes this state is just an integer (sometimes
+just the value of the previously generated random number), but often it
+is more complicated than that and may involve a whole array of numbers,
+possibly with some indices thrown in.  To use the random number
+generators, you do not need to know the details of what comprises the
+state, and besides that varies from algorithm to algorithm.
+
+   The random number generator library uses two special structs,
+`gsl_rng_type' which holds static information about each type of
+generator and `gsl_rng' which describes an instance of a generator
+created from a given `gsl_rng_type'.
+
+   The functions described in this section are declared in the header
+file `gsl_rng.h'.
+
+\1f
+File: gsl-ref.info,  Node: Random number generator initialization,  Next: Sampling from a random number generator,  Prev: The Random Number Generator Interface,  Up: Random Number Generation
+
+18.3 Random number generator initialization
+===========================================
+
+ -- Function: gsl_rng * gsl_rng_alloc (const gsl_rng_type * T)
+     This function returns a pointer to a newly-created instance of a
+     random number generator of type T.  For example, the following
+     code creates an instance of the Tausworthe generator,
+
+          gsl_rng * r = gsl_rng_alloc (gsl_rng_taus);
+
+     If there is insufficient memory to create the generator then the
+     function returns a null pointer and the error handler is invoked
+     with an error code of `GSL_ENOMEM'.
+
+     The generator is automatically initialized with the default seed,
+     `gsl_rng_default_seed'.  This is zero by default but can be changed
+     either directly or by using the environment variable `GSL_RNG_SEED'
+     (*note Random number environment variables::).
+
+     The details of the available generator types are described later
+     in this chapter.
+
+ -- Function: void gsl_rng_set (const gsl_rng * R, unsigned long int S)
+     This function initializes (or `seeds') the random number
+     generator.  If the generator is seeded with the same value of S on
+     two different runs, the same stream of random numbers will be
+     generated by successive calls to the routines below.  If different
+     values of S >= 1 are supplied, then the generated streams of random
+     numbers should be completely different.  If the seed S is zero
+     then the standard seed from the original implementation is used
+     instead.  For example, the original Fortran source code for the
+     `ranlux' generator used a seed of 314159265, and so choosing S
+     equal to zero reproduces this when using `gsl_rng_ranlux'.
+
+     When using multiple seeds with the same generator, choose seed
+     values greater than zero to avoid collisions with the default
+     setting.
+
+     Note that the most generators only accept 32-bit seeds, with higher
+     values being reduced modulo 2^32.  For generators with smaller
+     ranges the maximum seed value will typically be lower.
+
+ -- Function: void gsl_rng_free (gsl_rng * R)
+     This function frees all the memory associated with the generator R.
+
+\1f
+File: gsl-ref.info,  Node: Sampling from a random number generator,  Next: Auxiliary random number generator functions,  Prev: Random number generator initialization,  Up: Random Number Generation
+
+18.4 Sampling from a random number generator
+============================================
+
+The following functions return uniformly distributed random numbers,
+either as integers or double precision floating point numbers.  Inline
+versions of these functions are used when `HAVE_INLINE' is defined.  To
+obtain non-uniform distributions *note Random Number Distributions::.
+
+ -- Function: unsigned long int gsl_rng_get (const gsl_rng * R)
+     This function returns a random integer from the generator R.  The
+     minimum and maximum values depend on the algorithm used, but all
+     integers in the range [MIN,MAX] are equally likely.  The values of
+     MIN and MAX can determined using the auxiliary functions
+     `gsl_rng_max (r)' and `gsl_rng_min (r)'.
+
+ -- Function: double gsl_rng_uniform (const gsl_rng * R)
+     This function returns a double precision floating point number
+     uniformly distributed in the range [0,1).  The range includes 0.0
+     but excludes 1.0.  The value is typically obtained by dividing the
+     result of `gsl_rng_get(r)' by `gsl_rng_max(r) + 1.0' in double
+     precision.  Some generators compute this ratio internally so that
+     they can provide floating point numbers with more than 32 bits of
+     randomness (the maximum number of bits that can be portably
+     represented in a single `unsigned long int').
+
+ -- Function: double gsl_rng_uniform_pos (const gsl_rng * R)
+     This function returns a positive double precision floating point
+     number uniformly distributed in the range (0,1), excluding both
+     0.0 and 1.0.  The number is obtained by sampling the generator
+     with the algorithm of `gsl_rng_uniform' until a non-zero value is
+     obtained.  You can use this function if you need to avoid a
+     singularity at 0.0.
+
+ -- Function: unsigned long int gsl_rng_uniform_int (const gsl_rng * R,
+          unsigned long int N)
+     This function returns a random integer from 0 to n-1 inclusive by
+     scaling down and/or discarding samples from the generator R.  All
+     integers in the range [0,n-1] are produced with equal probability.
+     For generators with a non-zero minimum value an offset is applied
+     so that zero is returned with the correct probability.
+
+     Note that this function is designed for sampling from ranges
+     smaller than the range of the underlying generator.  The parameter
+     N must be less than or equal to the range of the generator R.  If
+     N is larger than the range of the generator then the function
+     calls the error handler with an error code of `GSL_EINVAL' and
+     returns zero.
+
+     In particular, this function is not intended for generating the
+     full range of unsigned integer values [0,2^32-1]. Instead choose a
+     generator with the maximal integer range and zero minimum value,
+     such as `gsl_rng_ranlxd1', `gsl_rng_mt19937' or `gsl_rng_taus',
+     and sample it directly using `gsl_rng_get'.  The range of each
+     generator can be found using the auxiliary functions described in
+     the next section.
+
+\1f
+File: gsl-ref.info,  Node: Auxiliary random number generator functions,  Next: Random number environment variables,  Prev: Sampling from a random number generator,  Up: Random Number Generation
+
+18.5 Auxiliary random number generator functions
+================================================
+
+The following functions provide information about an existing
+generator.  You should use them in preference to hard-coding the
+generator parameters into your own code.
+
+ -- Function: const char * gsl_rng_name (const gsl_rng * R)
+     This function returns a pointer to the name of the generator.  For
+     example,
+
+          printf ("r is a '%s' generator\n",
+                  gsl_rng_name (r));
+
+     would print something like `r is a 'taus' generator'.
+
+ -- Function: unsigned long int gsl_rng_max (const gsl_rng * R)
+     `gsl_rng_max' returns the largest value that `gsl_rng_get' can
+     return.
+
+ -- Function: unsigned long int gsl_rng_min (const gsl_rng * R)
+     `gsl_rng_min' returns the smallest value that `gsl_rng_get' can
+     return.  Usually this value is zero.  There are some generators
+     with algorithms that cannot return zero, and for these generators
+     the minimum value is 1.
+
+ -- Function: void * gsl_rng_state (const gsl_rng * R)
+ -- Function: size_t gsl_rng_size (const gsl_rng * R)
+     These functions return a pointer to the state of generator R and
+     its size.  You can use this information to access the state
+     directly.  For example, the following code will write the state of
+     a generator to a stream,
+
+          void * state = gsl_rng_state (r);
+          size_t n = gsl_rng_size (r);
+          fwrite (state, n, 1, stream);
+
+ -- Function: const gsl_rng_type ** gsl_rng_types_setup (void)
+     This function returns a pointer to an array of all the available
+     generator types, terminated by a null pointer. The function should
+     be called once at the start of the program, if needed.  The
+     following code fragment shows how to iterate over the array of
+     generator types to print the names of the available algorithms,
+
+          const gsl_rng_type **t, **t0;
+
+          t0 = gsl_rng_types_setup ();
+
+          printf ("Available generators:\n");
+
+          for (t = t0; *t != 0; t++)
+            {
+              printf ("%s\n", (*t)->name);
+            }
+
+\1f
+File: gsl-ref.info,  Node: Random number environment variables,  Next: Copying random number generator state,  Prev: Auxiliary random number generator functions,  Up: Random Number Generation
+
+18.6 Random number environment variables
+========================================
+
+The library allows you to choose a default generator and seed from the
+environment variables `GSL_RNG_TYPE' and `GSL_RNG_SEED' and the
+function `gsl_rng_env_setup'.  This makes it easy try out different
+generators and seeds without having to recompile your program.
+
+ -- Function: const gsl_rng_type * gsl_rng_env_setup (void)
+     This function reads the environment variables `GSL_RNG_TYPE' and
+     `GSL_RNG_SEED' and uses their values to set the corresponding
+     library variables `gsl_rng_default' and `gsl_rng_default_seed'.
+     These global variables are defined as follows,
+
+          extern const gsl_rng_type *gsl_rng_default
+          extern unsigned long int gsl_rng_default_seed
+
+     The environment variable `GSL_RNG_TYPE' should be the name of a
+     generator, such as `taus' or `mt19937'.  The environment variable
+     `GSL_RNG_SEED' should contain the desired seed value.  It is
+     converted to an `unsigned long int' using the C library function
+     `strtoul'.
+
+     If you don't specify a generator for `GSL_RNG_TYPE' then
+     `gsl_rng_mt19937' is used as the default.  The initial value of
+     `gsl_rng_default_seed' is zero.
+
+
+Here is a short program which shows how to create a global generator
+using the environment variables `GSL_RNG_TYPE' and `GSL_RNG_SEED',
+
+     #include <stdio.h>
+     #include <gsl/gsl_rng.h>
+
+     gsl_rng * r;  /* global generator */
+
+     int
+     main (void)
+     {
+       const gsl_rng_type * T;
+
+       gsl_rng_env_setup();
+
+       T = gsl_rng_default;
+       r = gsl_rng_alloc (T);
+
+       printf ("generator type: %s\n", gsl_rng_name (r));
+       printf ("seed = %lu\n", gsl_rng_default_seed);
+       printf ("first value = %lu\n", gsl_rng_get (r));
+
+       gsl_rng_free (r);
+       return 0;
+     }
+
+Running the program without any environment variables uses the initial
+defaults, an `mt19937' generator with a seed of 0,
+
+     $ ./a.out
+     generator type: mt19937
+     seed = 0
+     first value = 4293858116
+
+By setting the two variables on the command line we can change the
+default generator and the seed,
+
+     $ GSL_RNG_TYPE="taus" GSL_RNG_SEED=123 ./a.out
+     GSL_RNG_TYPE=taus
+     GSL_RNG_SEED=123
+     generator type: taus
+     seed = 123
+     first value = 2720986350
+
+\1f
+File: gsl-ref.info,  Node: Copying random number generator state,  Next: Reading and writing random number generator state,  Prev: Random number environment variables,  Up: Random Number Generation
+
+18.7 Copying random number generator state
+==========================================
+
+The above methods do not expose the random number `state' which changes
+from call to call.  It is often useful to be able to save and restore
+the state.  To permit these practices, a few somewhat more advanced
+functions are supplied.  These include:
+
+ -- Function: int gsl_rng_memcpy (gsl_rng * DEST, const gsl_rng * SRC)
+     This function copies the random number generator SRC into the
+     pre-existing generator DEST, making DEST into an exact copy of
+     SRC.  The two generators must be of the same type.
+
+ -- Function: gsl_rng * gsl_rng_clone (const gsl_rng * R)
+     This function returns a pointer to a newly created generator which
+     is an exact copy of the generator R.
+
+\1f
+File: gsl-ref.info,  Node: Reading and writing random number generator state,  Next: Random number generator algorithms,  Prev: Copying random number generator state,  Up: Random Number Generation
+
+18.8 Reading and writing random number generator state
+======================================================
+
+The library provides functions for reading and writing the random
+number state to a file as binary data.
+
+ -- Function: int gsl_rng_fwrite (FILE * STREAM, const gsl_rng * R)
+     This function writes the random number state of the random number
+     generator R to the stream STREAM in binary format.  The return
+     value is 0 for success and `GSL_EFAILED' if there was a problem
+     writing to the file.  Since the data is written in the native
+     binary format it may not be portable between different
+     architectures.
+
+ -- Function: int gsl_rng_fread (FILE * STREAM, gsl_rng * R)
+     This function reads the random number state into the random number
+     generator R from the open stream STREAM in binary format.  The
+     random number generator R must be preinitialized with the correct
+     random number generator type since type information is not saved.
+     The return value is 0 for success and `GSL_EFAILED' if there was a
+     problem reading from the file.  The data is assumed to have been
+     written in the native binary format on the same architecture.
+
+\1f
+File: gsl-ref.info,  Node: Random number generator algorithms,  Next: Unix random number generators,  Prev: Reading and writing random number generator state,  Up: Random Number Generation
+
+18.9 Random number generator algorithms
+=======================================
+
+The functions described above make no reference to the actual algorithm
+used.  This is deliberate so that you can switch algorithms without
+having to change any of your application source code.  The library
+provides a large number of generators of different types, including
+simulation quality generators, generators provided for compatibility
+with other libraries and historical generators from the past.
+
+   The following generators are recommended for use in simulation.  They
+have extremely long periods, low correlation and pass most statistical
+tests.  For the most reliable source of uncorrelated numbers, the
+second-generation RANLUX generators have the strongest proof of
+randomness.
+
+ -- Generator: gsl_rng_mt19937
+     The MT19937 generator of Makoto Matsumoto and Takuji Nishimura is a
+     variant of the twisted generalized feedback shift-register
+     algorithm, and is known as the "Mersenne Twister" generator.  It
+     has a Mersenne prime period of 2^19937 - 1 (about 10^6000) and is
+     equi-distributed in 623 dimensions.  It has passed the DIEHARD
+     statistical tests.  It uses 624 words of state per generator and is
+     comparable in speed to the other generators.  The original
+     generator used a default seed of 4357 and choosing S equal to zero
+     in `gsl_rng_set' reproduces this.  Later versions switched to 5489
+     as the default seed, you can choose this explicitly via
+     `gsl_rng_set' instead if you require it.
+
+     For more information see,
+          Makoto Matsumoto and Takuji Nishimura, "Mersenne Twister: A
+          623-dimensionally equidistributed uniform pseudorandom number
+          generator". `ACM Transactions on Modeling and Computer
+          Simulation', Vol. 8, No. 1 (Jan. 1998), Pages 3-30
+
+     The generator `gsl_rng_mt19937' uses the second revision of the
+     seeding procedure published by the two authors above in 2002.  The
+     original seeding procedures could cause spurious artifacts for
+     some seed values. They are still available through the alternative
+     generators `gsl_rng_mt19937_1999' and `gsl_rng_mt19937_1998'.
+
+ -- Generator: gsl_rng_ranlxs0
+ -- Generator: gsl_rng_ranlxs1
+ -- Generator: gsl_rng_ranlxs2
+     The generator `ranlxs0' is a second-generation version of the
+     RANLUX algorithm of Lu"scher, which produces "luxury random
+     numbers".  This generator provides single precision output (24
+     bits) at three luxury levels `ranlxs0', `ranlxs1' and `ranlxs2',
+     in increasing order of strength.  It uses double-precision
+     floating point arithmetic internally and can be significantly
+     faster than the integer version of `ranlux', particularly on
+     64-bit architectures.  The period of the generator is about
+     10^171.  The algorithm has mathematically proven properties and
+     can provide truly decorrelated numbers at a known level of
+     randomness.  The higher luxury levels provide increased
+     decorrelation between samples as an additional safety margin.
+
+     Note that the range of allowed seeds for this generator is
+     [0,2^31-1]. Higher seed values are wrapped modulo 2^31.
+
+ -- Generator: gsl_rng_ranlxd1
+ -- Generator: gsl_rng_ranlxd2
+     These generators produce double precision output (48 bits) from the
+     RANLXS generator.  The library provides two luxury levels
+     `ranlxd1' and `ranlxd2', in increasing order of strength.
+
+ -- Generator: gsl_rng_ranlux
+ -- Generator: gsl_rng_ranlux389
+     The `ranlux' generator is an implementation of the original
+     algorithm developed by Lu"scher.  It uses a
+     lagged-fibonacci-with-skipping algorithm to produce "luxury random
+     numbers".  It is a 24-bit generator, originally designed for
+     single-precision IEEE floating point numbers.  This implementation
+     is based on integer arithmetic, while the second-generation
+     versions RANLXS and RANLXD described above provide floating-point
+     implementations which will be faster on many platforms.  The
+     period of the generator is about 10^171.  The algorithm has
+     mathematically proven properties and it can provide truly
+     decorrelated numbers at a known level of randomness.  The default
+     level of decorrelation recommended by Lu"scher is provided by
+     `gsl_rng_ranlux', while `gsl_rng_ranlux389' gives the highest
+     level of randomness, with all 24 bits decorrelated.  Both types of
+     generator use 24 words of state per generator.
+
+     For more information see,
+          M. Lu"scher, "A portable high-quality random number generator
+          for lattice field theory calculations", `Computer Physics
+          Communications', 79 (1994) 100-110.
+
+          F. James, "RANLUX: A Fortran implementation of the
+          high-quality pseudo-random number generator of Lu"scher",
+          `Computer Physics Communications', 79 (1994) 111-114
+
+ -- Generator: gsl_rng_cmrg
+     This is a combined multiple recursive generator by L'Ecuyer.  Its
+     sequence is,
+
+          z_n = (x_n - y_n) mod m_1
+
+     where the two underlying generators x_n and y_n are,
+
+          x_n = (a_1 x_{n-1} + a_2 x_{n-2} + a_3 x_{n-3}) mod m_1
+          y_n = (b_1 y_{n-1} + b_2 y_{n-2} + b_3 y_{n-3}) mod m_2
+
+     with coefficients a_1 = 0, a_2 = 63308, a_3 = -183326, b_1 = 86098,
+     b_2 = 0, b_3 = -539608, and moduli m_1 = 2^31 - 1 = 2147483647 and
+     m_2 = 2145483479.
+
+     The period of this generator is lcm(m_1^3-1, m_2^3-1), which is
+     approximately 2^185 (about 10^56).  It uses 6 words of state per
+     generator.  For more information see,
+
+          P. L'Ecuyer, "Combined Multiple Recursive Random Number
+          Generators", `Operations Research', 44, 5 (1996), 816-822.
+
+ -- Generator: gsl_rng_mrg
+     This is a fifth-order multiple recursive generator by L'Ecuyer,
+     Blouin and Coutre.  Its sequence is,
+
+          x_n = (a_1 x_{n-1} + a_5 x_{n-5}) mod m
+
+     with a_1 = 107374182, a_2 = a_3 = a_4 = 0, a_5 = 104480 and m =
+     2^31 - 1.
+
+     The period of this generator is about 10^46.  It uses 5 words of
+     state per generator.  More information can be found in the
+     following paper,
+          P. L'Ecuyer, F. Blouin, and R. Coutre, "A search for good
+          multiple recursive random number generators", `ACM
+          Transactions on Modeling and Computer Simulation' 3, 87-98
+          (1993).
+
+ -- Generator: gsl_rng_taus
+ -- Generator: gsl_rng_taus2
+     This is a maximally equidistributed combined Tausworthe generator
+     by L'Ecuyer.  The sequence is,
+
+          x_n = (s1_n ^^ s2_n ^^ s3_n)
+
+     where,
+
+          s1_{n+1} = (((s1_n&4294967294)<<12)^^(((s1_n<<13)^^s1_n)>>19))
+          s2_{n+1} = (((s2_n&4294967288)<< 4)^^(((s2_n<< 2)^^s2_n)>>25))
+          s3_{n+1} = (((s3_n&4294967280)<<17)^^(((s3_n<< 3)^^s3_n)>>11))
+
+     computed modulo 2^32.  In the formulas above ^^ denotes
+     "exclusive-or".  Note that the algorithm relies on the properties
+     of 32-bit unsigned integers and has been implemented using a
+     bitmask of `0xFFFFFFFF' to make it work on 64 bit machines.
+
+     The period of this generator is 2^88 (about 10^26).  It uses 3
+     words of state per generator.  For more information see,
+
+          P. L'Ecuyer, "Maximally Equidistributed Combined Tausworthe
+          Generators", `Mathematics of Computation', 65, 213 (1996),
+          203-213.
+
+     The generator `gsl_rng_taus2' uses the same algorithm as
+     `gsl_rng_taus' but with an improved seeding procedure described in
+     the paper,
+
+          P. L'Ecuyer, "Tables of Maximally Equidistributed Combined
+          LFSR Generators", `Mathematics of Computation', 68, 225
+          (1999), 261-269
+
+     The generator `gsl_rng_taus2' should now be used in preference to
+     `gsl_rng_taus'.
+
+ -- Generator: gsl_rng_gfsr4
+     The `gfsr4' generator is like a lagged-fibonacci generator, and
+     produces each number as an `xor''d sum of four previous values.
+
+          r_n = r_{n-A} ^^ r_{n-B} ^^ r_{n-C} ^^ r_{n-D}
+
+     Ziff (ref below) notes that "it is now widely known" that two-tap
+     registers (such as R250, which is described below) have serious
+     flaws, the most obvious one being the three-point correlation that
+     comes from the definition of the generator.  Nice mathematical
+     properties can be derived for GFSR's, and numerics bears out the
+     claim that 4-tap GFSR's with appropriately chosen offsets are as
+     random as can be measured, using the author's test.
+
+     This implementation uses the values suggested the example on p392
+     of Ziff's article: A=471, B=1586, C=6988, D=9689.
+
+     If the offsets are appropriately chosen (such as the one ones in
+     this implementation), then the sequence is said to be maximal;
+     that means that the period is 2^D - 1, where D is the longest lag.
+     (It is one less than 2^D because it is not permitted to have all
+     zeros in the `ra[]' array.)  For this implementation with D=9689
+     that works out to about 10^2917.
+
+     Note that the implementation of this generator using a 32-bit
+     integer amounts to 32 parallel implementations of one-bit
+     generators.  One consequence of this is that the period of this
+     32-bit generator is the same as for the one-bit generator.
+     Moreover, this independence means that all 32-bit patterns are
+     equally likely, and in particular that 0 is an allowed random
+     value.  (We are grateful to Heiko Bauke for clarifying for us these
+     properties of GFSR random number generators.)
+
+     For more information see,
+          Robert M. Ziff, "Four-tap shift-register-sequence
+          random-number generators", `Computers in Physics', 12(4),
+          Jul/Aug 1998, pp 385-392.
+
+\1f
+File: gsl-ref.info,  Node: Unix random number generators,  Next: Other random number generators,  Prev: Random number generator algorithms,  Up: Random Number Generation
+
+18.10 Unix random number generators
+===================================
+
+The standard Unix random number generators `rand', `random' and
+`rand48' are provided as part of GSL. Although these generators are
+widely available individually often they aren't all available on the
+same platform.  This makes it difficult to write portable code using
+them and so we have included the complete set of Unix generators in GSL
+for convenience.  Note that these generators don't produce high-quality
+randomness and aren't suitable for work requiring accurate statistics.
+However, if you won't be measuring statistical quantities and just want
+to introduce some variation into your program then these generators are
+quite acceptable.
+
+ -- Generator: gsl_rng_rand
+     This is the BSD `rand' generator.  Its sequence is
+
+          x_{n+1} = (a x_n + c) mod m
+
+     with a = 1103515245, c = 12345 and m = 2^31.  The seed specifies
+     the initial value, x_1.  The period of this generator is 2^31, and
+     it uses 1 word of storage per generator.
+
+ -- Generator: gsl_rng_random_bsd
+ -- Generator: gsl_rng_random_libc5
+ -- Generator: gsl_rng_random_glibc2
+     These generators implement the `random' family of functions, a set
+     of linear feedback shift register generators originally used in BSD
+     Unix.  There are several versions of `random' in use today: the
+     original BSD version (e.g. on SunOS4), a libc5 version (found on
+     older GNU/Linux systems) and a glibc2 version.  Each version uses a
+     different seeding procedure, and thus produces different sequences.
+
+     The original BSD routines accepted a variable length buffer for the
+     generator state, with longer buffers providing higher-quality
+     randomness.  The `random' function implemented algorithms for
+     buffer lengths of 8, 32, 64, 128 and 256 bytes, and the algorithm
+     with the largest length that would fit into the user-supplied
+     buffer was used.  To support these algorithms additional
+     generators are available with the following names,
+
+          gsl_rng_random8_bsd
+          gsl_rng_random32_bsd
+          gsl_rng_random64_bsd
+          gsl_rng_random128_bsd
+          gsl_rng_random256_bsd
+
+     where the numeric suffix indicates the buffer length.  The
+     original BSD `random' function used a 128-byte default buffer and
+     so `gsl_rng_random_bsd' has been made equivalent to
+     `gsl_rng_random128_bsd'.  Corresponding versions of the `libc5'
+     and `glibc2' generators are also available, with the names
+     `gsl_rng_random8_libc5', `gsl_rng_random8_glibc2', etc.
+
+ -- Generator: gsl_rng_rand48
+     This is the Unix `rand48' generator.  Its sequence is
+
+          x_{n+1} = (a x_n + c) mod m
+
+     defined on 48-bit unsigned integers with a = 25214903917, c = 11
+     and m = 2^48.  The seed specifies the upper 32 bits of the initial
+     value, x_1, with the lower 16 bits set to `0x330E'.  The function
+     `gsl_rng_get' returns the upper 32 bits from each term of the
+     sequence.  This does not have a direct parallel in the original
+     `rand48' functions, but forcing the result to type `long int'
+     reproduces the output of `mrand48'.  The function
+     `gsl_rng_uniform' uses the full 48 bits of internal state to return
+     the double precision number x_n/m, which is equivalent to the
+     function `drand48'.  Note that some versions of the GNU C Library
+     contained a bug in `mrand48' function which caused it to produce
+     different results (only the lower 16-bits of the return value were
+     set).
+
+\1f
+File: gsl-ref.info,  Node: Other random number generators,  Next: Random Number Generator Performance,  Prev: Unix random number generators,  Up: Random Number Generation
+
+18.11 Other random number generators
+====================================
+
+The generators in this section are provided for compatibility with
+existing libraries.  If you are converting an existing program to use
+GSL then you can select these generators to check your new
+implementation against the original one, using the same random number
+generator.  After verifying that your new program reproduces the
+original results you can then switch to a higher-quality generator.
+
+   Note that most of the generators in this section are based on single
+linear congruence relations, which are the least sophisticated type of
+generator.  In particular, linear congruences have poor properties when
+used with a non-prime modulus, as several of these routines do (e.g.
+with a power of two modulus, 2^31 or 2^32).  This leads to periodicity
+in the least significant bits of each number, with only the higher bits
+having any randomness.  Thus if you want to produce a random bitstream
+it is best to avoid using the least significant bits.
+
+ -- Generator: gsl_rng_ranf
+     This is the CRAY random number generator `RANF'.  Its sequence is
+
+          x_{n+1} = (a x_n) mod m
+
+     defined on 48-bit unsigned integers with a = 44485709377909 and m
+     = 2^48.  The seed specifies the lower 32 bits of the initial value,
+     x_1, with the lowest bit set to prevent the seed taking an even
+     value.  The upper 16 bits of x_1 are set to 0. A consequence of
+     this procedure is that the pairs of seeds 2 and 3, 4 and 5, etc.
+     produce the same sequences.
+
+     The generator compatible with the CRAY MATHLIB routine RANF. It
+     produces double precision floating point numbers which should be
+     identical to those from the original RANF.
+
+     There is a subtlety in the implementation of the seeding.  The
+     initial state is reversed through one step, by multiplying by the
+     modular inverse of a mod m.  This is done for compatibility with
+     the original CRAY implementation.
+
+     Note that you can only seed the generator with integers up to
+     2^32, while the original CRAY implementation uses non-portable
+     wide integers which can cover all 2^48 states of the generator.
+
+     The function `gsl_rng_get' returns the upper 32 bits from each term
+     of the sequence.  The function `gsl_rng_uniform' uses the full 48
+     bits to return the double precision number x_n/m.
+
+     The period of this generator is 2^46.
+
+ -- Generator: gsl_rng_ranmar
+     This is the RANMAR lagged-fibonacci generator of Marsaglia, Zaman
+     and Tsang.  It is a 24-bit generator, originally designed for
+     single-precision IEEE floating point numbers.  It was included in
+     the CERNLIB high-energy physics library.
+
+ -- Generator: gsl_rng_r250
+     This is the shift-register generator of Kirkpatrick and Stoll.  The
+     sequence is based on the recurrence
+
+          x_n = x_{n-103} ^^ x_{n-250}
+
+     where ^^ denotes "exclusive-or", defined on 32-bit words.  The
+     period of this generator is about 2^250 and it uses 250 words of
+     state per generator.
+
+     For more information see,
+          S. Kirkpatrick and E. Stoll, "A very fast shift-register
+          sequence random number generator", `Journal of Computational
+          Physics', 40, 517-526 (1981)
+
+ -- Generator: gsl_rng_tt800
+     This is an earlier version of the twisted generalized feedback
+     shift-register generator, and has been superseded by the
+     development of MT19937.  However, it is still an acceptable
+     generator in its own right.  It has a period of 2^800 and uses 33
+     words of storage per generator.
+
+     For more information see,
+          Makoto Matsumoto and Yoshiharu Kurita, "Twisted GFSR
+          Generators II", `ACM Transactions on Modelling and Computer
+          Simulation', Vol. 4, No. 3, 1994, pages 254-266.
+
+ -- Generator: gsl_rng_vax
+     This is the VAX generator `MTH$RANDOM'.  Its sequence is,
+
+          x_{n+1} = (a x_n + c) mod m
+
+     with a = 69069, c = 1 and m = 2^32.  The seed specifies the
+     initial value, x_1.  The period of this generator is 2^32 and it
+     uses 1 word of storage per generator.
+
+ -- Generator: gsl_rng_transputer
+     This is the random number generator from the INMOS Transputer
+     Development system.  Its sequence is,
+
+          x_{n+1} = (a x_n) mod m
+
+     with a = 1664525 and m = 2^32.  The seed specifies the initial
+     value, x_1.
+
+ -- Generator: gsl_rng_randu
+     This is the IBM `RANDU' generator.  Its sequence is
+
+          x_{n+1} = (a x_n) mod m
+
+     with a = 65539 and m = 2^31.  The seed specifies the initial value,
+     x_1.  The period of this generator was only 2^29.  It has become a
+     textbook example of a poor generator.
+
+ -- Generator: gsl_rng_minstd
+     This is Park and Miller's "minimal standard" MINSTD generator, a
+     simple linear congruence which takes care to avoid the major
+     pitfalls of such algorithms.  Its sequence is,
+
+          x_{n+1} = (a x_n) mod m
+
+     with a = 16807 and m = 2^31 - 1 = 2147483647.  The seed specifies
+     the initial value, x_1.  The period of this generator is about
+     2^31.
+
+     This generator is used in the IMSL Library (subroutine RNUN) and in
+     MATLAB (the RAND function).  It is also sometimes known by the
+     acronym "GGL" (I'm not sure what that stands for).
+
+     For more information see,
+          Park and Miller, "Random Number Generators: Good ones are
+          hard to find", `Communications of the ACM', October 1988,
+          Volume 31, No 10, pages 1192-1201.
+
+ -- Generator: gsl_rng_uni
+ -- Generator: gsl_rng_uni32
+     This is a reimplementation of the 16-bit SLATEC random number
+     generator RUNIF. A generalization of the generator to 32 bits is
+     provided by `gsl_rng_uni32'.  The original source code is
+     available from NETLIB.
+
+ -- Generator: gsl_rng_slatec
+     This is the SLATEC random number generator RAND. It is ancient.
+     The original source code is available from NETLIB.
+
+ -- Generator: gsl_rng_zuf
+     This is the ZUFALL lagged Fibonacci series generator of Peterson.
+     Its sequence is,
+
+          t = u_{n-273} + u_{n-607}
+          u_n  = t - floor(t)
+
+     The original source code is available from NETLIB.  For more
+     information see,
+          W. Petersen, "Lagged Fibonacci Random Number Generators for
+          the NEC SX-3", `International Journal of High Speed
+          Computing' (1994).
+
+ -- Generator: gsl_rng_knuthran2
+     This is a second-order multiple recursive generator described by
+     Knuth in `Seminumerical Algorithms', 3rd Ed., page 108.  Its
+     sequence is,
+
+          x_n = (a_1 x_{n-1} + a_2 x_{n-2}) mod m
+
+     with a_1 = 271828183, a_2 = 314159269, and m = 2^31 - 1.
+
+ -- Generator: gsl_rng_knuthran2002
+ -- Generator: gsl_rng_knuthran
+     This is a second-order multiple recursive generator described by
+     Knuth in `Seminumerical Algorithms', 3rd Ed., Section 3.6.  Knuth
+     provides its C code.  The updated routine `gsl_rng_knuthran2002'
+     is from the revised 9th printing and corrects some weaknesses in
+     the earlier version, which is implemented as `gsl_rng_knuthran'.
+
+ -- Generator: gsl_rng_borosh13
+ -- Generator: gsl_rng_fishman18
+ -- Generator: gsl_rng_fishman20
+ -- Generator: gsl_rng_lecuyer21
+ -- Generator: gsl_rng_waterman14
+     These multiplicative generators are taken from Knuth's
+     `Seminumerical Algorithms', 3rd Ed., pages 106-108. Their sequence
+     is,
+
+          x_{n+1} = (a x_n) mod m
+
+     where the seed specifies the initial value, x_1.  The parameters a
+     and m are as follows, Borosh-Niederreiter: a = 1812433253, m =
+     2^32, Fishman18: a = 62089911, m = 2^31 - 1, Fishman20: a = 48271,
+     m = 2^31 - 1, L'Ecuyer: a = 40692, m = 2^31 - 249, Waterman: a =
+     1566083941, m = 2^32.
+
+ -- Generator: gsl_rng_fishman2x
+     This is the L'Ecuyer-Fishman random number generator. It is taken
+     from Knuth's `Seminumerical Algorithms', 3rd Ed., page 108. Its
+     sequence is,
+
+          z_{n+1} = (x_n - y_n) mod m
+
+     with m = 2^31 - 1.  x_n and y_n are given by the `fishman20' and
+     `lecuyer21' algorithms.  The seed specifies the initial value, x_1.
+
+
+ -- Generator: gsl_rng_coveyou
+     This is the Coveyou random number generator. It is taken from
+     Knuth's `Seminumerical Algorithms', 3rd Ed., Section 3.2.2. Its
+     sequence is,
+
+          x_{n+1} = (x_n (x_n + 1)) mod m
+
+     with m = 2^32.  The seed specifies the initial value, x_1.
+
+\1f
+File: gsl-ref.info,  Node: Random Number Generator Performance,  Next: Random Number Generator Examples,  Prev: Other random number generators,  Up: Random Number Generation
+
+18.12 Performance
+=================
+
+The following table shows the relative performance of a selection the
+available random number generators.  The fastest simulation quality
+generators are `taus', `gfsr4' and `mt19937'.  The generators which
+offer the best mathematically-proven quality are those based on the
+RANLUX algorithm.
+
+     1754 k ints/sec,    870 k doubles/sec, taus
+     1613 k ints/sec,    855 k doubles/sec, gfsr4
+     1370 k ints/sec,    769 k doubles/sec, mt19937
+      565 k ints/sec,    571 k doubles/sec, ranlxs0
+      400 k ints/sec,    405 k doubles/sec, ranlxs1
+      490 k ints/sec,    389 k doubles/sec, mrg
+      407 k ints/sec,    297 k doubles/sec, ranlux
+      243 k ints/sec,    254 k doubles/sec, ranlxd1
+      251 k ints/sec,    253 k doubles/sec, ranlxs2
+      238 k ints/sec,    215 k doubles/sec, cmrg
+      247 k ints/sec,    198 k doubles/sec, ranlux389
+      141 k ints/sec,    140 k doubles/sec, ranlxd2
+
+\1f
+File: gsl-ref.info,  Node: Random Number Generator Examples,  Next: Random Number References and Further Reading,  Prev: Random Number Generator Performance,  Up: Random Number Generation
+
+18.13 Examples
+==============
+
+The following program demonstrates the use of a random number generator
+to produce uniform random numbers in the range [0.0, 1.0),
+
+     #include <stdio.h>
+     #include <gsl/gsl_rng.h>
+
+     int
+     main (void)
+     {
+       const gsl_rng_type * T;
+       gsl_rng * r;
+
+       int i, n = 10;
+
+       gsl_rng_env_setup();
+
+       T = gsl_rng_default;
+       r = gsl_rng_alloc (T);
+
+       for (i = 0; i < n; i++)
+         {
+           double u = gsl_rng_uniform (r);
+           printf ("%.5f\n", u);
+         }
+
+       gsl_rng_free (r);
+
+       return 0;
+     }
+
+Here is the output of the program,
+
+     $ ./a.out
+     0.99974
+     0.16291
+     0.28262
+     0.94720
+     0.23166
+     0.48497
+     0.95748
+     0.74431
+     0.54004
+     0.73995
+
+The numbers depend on the seed used by the generator.  The default seed
+can be changed with the `GSL_RNG_SEED' environment variable to produce
+a different stream of numbers.  The generator itself can be changed
+using the environment variable `GSL_RNG_TYPE'.  Here is the output of
+the program using a seed value of 123 and the multiple-recursive
+generator `mrg',
+
+     $ GSL_RNG_SEED=123 GSL_RNG_TYPE=mrg ./a.out
+     GSL_RNG_TYPE=mrg
+     GSL_RNG_SEED=123
+     0.33050
+     0.86631
+     0.32982
+     0.67620
+     0.53391
+     0.06457
+     0.16847
+     0.70229
+     0.04371
+     0.86374
+
+\1f
+File: gsl-ref.info,  Node: Random Number References and Further Reading,  Next: Random Number Acknowledgements,  Prev: Random Number Generator Examples,  Up: Random Number Generation
+
+18.14 References and Further Reading
+====================================
+
+The subject of random number generation and testing is reviewed
+extensively in Knuth's `Seminumerical Algorithms'.
+
+     Donald E. Knuth, `The Art of Computer Programming: Seminumerical
+     Algorithms' (Vol 2, 3rd Ed, 1997), Addison-Wesley, ISBN 0201896842.
+
+Further information is available in the review paper written by Pierre
+L'Ecuyer,
+
+     P. L'Ecuyer, "Random Number Generation", Chapter 4 of the Handbook
+     on Simulation, Jerry Banks Ed., Wiley, 1998, 93-137.
+
+     `http://www.iro.umontreal.ca/~lecuyer/papers.html' in the file
+     `handsim.ps'.
+
+The source code for the DIEHARD random number generator tests is also
+available online,
+
+     `DIEHARD source code' G. Marsaglia,
+
+     `http://stat.fsu.edu/pub/diehard/'
+
+A comprehensive set of random number generator tests is available from
+NIST,
+
+     NIST Special Publication 800-22, "A Statistical Test Suite for the
+     Validation of Random Number Generators and Pseudo Random Number
+     Generators for Cryptographic Applications".
+
+     `http://csrc.nist.gov/rng/'
+
+\1f
+File: gsl-ref.info,  Node: Random Number Acknowledgements,  Prev: Random Number References and Further Reading,  Up: Random Number Generation
+
+18.15 Acknowledgements
+======================
+
+Thanks to Makoto Matsumoto, Takuji Nishimura and Yoshiharu Kurita for
+making the source code to their generators (MT19937, MM&TN; TT800,
+MM&YK) available under the GNU General Public License.  Thanks to Martin
+Lu"scher for providing notes and source code for the RANLXS and RANLXD
+generators.
+
+\1f
+File: gsl-ref.info,  Node: Quasi-Random Sequences,  Next: Random Number Distributions,  Prev: Random Number Generation,  Up: Top
+
+19 Quasi-Random Sequences
+*************************
+
+This chapter describes functions for generating quasi-random sequences
+in arbitrary dimensions.  A quasi-random sequence progressively covers a
+d-dimensional space with a set of points that are uniformly
+distributed.  Quasi-random sequences are also known as low-discrepancy
+sequences.  The quasi-random sequence generators use an interface that
+is similar to the interface for random number generators, except that
+seeding is not required--each generator produces a single sequence.
+
+   The functions described in this section are declared in the header
+file `gsl_qrng.h'.
+
+* Menu:
+
+* Quasi-random number generator initialization::
+* Sampling from a quasi-random number generator::
+* Auxiliary quasi-random number generator functions::
+* Saving and resorting quasi-random number generator state::
+* Quasi-random number generator algorithms::
+* Quasi-random number generator examples::
+* Quasi-random number references::
+
+\1f
+File: gsl-ref.info,  Node: Quasi-random number generator initialization,  Next: Sampling from a quasi-random number generator,  Up: Quasi-Random Sequences
+
+19.1 Quasi-random number generator initialization
+=================================================
+
+ -- Function: gsl_qrng * gsl_qrng_alloc (const gsl_qrng_type * T,
+          unsigned int D)
+     This function returns a pointer to a newly-created instance of a
+     quasi-random sequence generator of type T and dimension D.  If
+     there is insufficient memory to create the generator then the
+     function returns a null pointer and the error handler is invoked
+     with an error code of `GSL_ENOMEM'.
+
+ -- Function: void gsl_qrng_free (gsl_qrng * Q)
+     This function frees all the memory associated with the generator Q.
+
+ -- Function: void gsl_qrng_init (gsl_qrng * Q)
+     This function reinitializes the generator Q to its starting point.
+     Note that quasi-random sequences do not use a seed and always
+     produce the same set of values.
+
+\1f
+File: gsl-ref.info,  Node: Sampling from a quasi-random number generator,  Next: Auxiliary quasi-random number generator functions,  Prev: Quasi-random number generator initialization,  Up: Quasi-Random Sequences
+
+19.2 Sampling from a quasi-random number generator
+==================================================
+
+ -- Function: int gsl_qrng_get (const gsl_qrng * Q, double X[])
+     This function stores the next point from the sequence generator Q
+     in the array X.  The space available for X must match the
+     dimension of the generator.  The point X will lie in the range 0 <
+     x_i < 1 for each x_i.  An inline version of this function is used
+     when `HAVE_INLINE' is defined.
+
+\1f
+File: gsl-ref.info,  Node: Auxiliary quasi-random number generator functions,  Next: Saving and resorting quasi-random number generator state,  Prev: Sampling from a quasi-random number generator,  Up: Quasi-Random Sequences
+
+19.3 Auxiliary quasi-random number generator functions
+======================================================
+
+ -- Function: const char * gsl_qrng_name (const gsl_qrng * Q)
+     This function returns a pointer to the name of the generator.
+
+ -- Function: size_t gsl_qrng_size (const gsl_qrng * Q)
+ -- Function: void * gsl_qrng_state (const gsl_qrng * Q)
+     These functions return a pointer to the state of generator R and
+     its size.  You can use this information to access the state
+     directly.  For example, the following code will write the state of
+     a generator to a stream,
+
+          void * state = gsl_qrng_state (q);
+          size_t n = gsl_qrng_size (q);
+          fwrite (state, n, 1, stream);
+
+\1f
+File: gsl-ref.info,  Node: Saving and resorting quasi-random number generator state,  Next: Quasi-random number generator algorithms,  Prev: Auxiliary quasi-random number generator functions,  Up: Quasi-Random Sequences
+
+19.4 Saving and resorting quasi-random number generator state
+=============================================================
+
+ -- Function: int gsl_qrng_memcpy (gsl_qrng * DEST, const gsl_qrng *
+          SRC)
+     This function copies the quasi-random sequence generator SRC into
+     the pre-existing generator DEST, making DEST into an exact copy of
+     SRC.  The two generators must be of the same type.
+
+ -- Function: gsl_qrng * gsl_qrng_clone (const gsl_qrng * Q)
+     This function returns a pointer to a newly created generator which
+     is an exact copy of the generator Q.
+
+\1f
+File: gsl-ref.info,  Node: Quasi-random number generator algorithms,  Next: Quasi-random number generator examples,  Prev: Saving and resorting quasi-random number generator state,  Up: Quasi-Random Sequences
+
+19.5 Quasi-random number generator algorithms
+=============================================
+
+The following quasi-random sequence algorithms are available,
+
+ -- Generator: gsl_qrng_niederreiter_2
+     This generator uses the algorithm described in Bratley, Fox,
+     Niederreiter, `ACM Trans. Model. Comp. Sim.' 2, 195 (1992). It is
+     valid up to 12 dimensions.
+
+ -- Generator: gsl_qrng_sobol
+     This generator uses the Sobol sequence described in Antonov,
+     Saleev, `USSR Comput. Maths. Math. Phys.' 19, 252 (1980). It is
+     valid up to 40 dimensions.
+
+ -- Generator: gsl_qrng_halton
+ -- Generator: gsl_qrng_reversehalton
+     These generators use the Halton and reverse Halton sequences
+     described in J.H. Halton, `Numerische Mathematik' 2, 84-90 (1960)
+     and B. Vandewoestyne and R. Cools `Computational and Applied
+     Mathematics' 189, 1&2, 341-361 (2006).  They are valid up to 1229
+     dimensions.
+
+\1f
+File: gsl-ref.info,  Node: Quasi-random number generator examples,  Next: Quasi-random number references,  Prev: Quasi-random number generator algorithms,  Up: Quasi-Random Sequences
+
+19.6 Examples
+=============
+
+The following program prints the first 1024 points of the 2-dimensional
+Sobol sequence.
+
+     #include <stdio.h>
+     #include <gsl/gsl_qrng.h>
+
+     int
+     main (void)
+     {
+       int i;
+       gsl_qrng * q = gsl_qrng_alloc (gsl_qrng_sobol, 2);
+
+       for (i = 0; i < 1024; i++)
+         {
+           double v[2];
+           gsl_qrng_get (q, v);
+           printf ("%.5f %.5f\n", v[0], v[1]);
+         }
+
+       gsl_qrng_free (q);
+       return 0;
+     }
+
+Here is the output from the program,
+
+     $ ./a.out
+     0.50000 0.50000
+     0.75000 0.25000
+     0.25000 0.75000
+     0.37500 0.37500
+     0.87500 0.87500
+     0.62500 0.12500
+     0.12500 0.62500
+     ....
+
+It can be seen that successive points progressively fill-in the spaces
+between previous points.
+
+\1f
+File: gsl-ref.info,  Node: Quasi-random number references,  Prev: Quasi-random number generator examples,  Up: Quasi-Random Sequences
+
+19.7 References
+===============
+
+The implementations of the quasi-random sequence routines are based on
+the algorithms described in the following paper,
+
+     P. Bratley and B.L. Fox and H. Niederreiter, "Algorithm 738:
+     Programs to Generate Niederreiter's Low-discrepancy Sequences",
+     `ACM Transactions on Mathematical Software', Vol. 20, No. 4,
+     December, 1994, p. 494-495.
+
+\1f
+File: gsl-ref.info,  Node: Random Number Distributions,  Next: Statistics,  Prev: Quasi-Random Sequences,  Up: Top
+
+20 Random Number Distributions
+******************************
+
+This chapter describes functions for generating random variates and
+computing their probability distributions.  Samples from the
+distributions described in this chapter can be obtained using any of the
+random number generators in the library as an underlying source of
+randomness.
+
+   In the simplest cases a non-uniform distribution can be obtained
+analytically from the uniform distribution of a random number generator
+by applying an appropriate transformation.  This method uses one call to
+the random number generator.  More complicated distributions are created
+by the "acceptance-rejection" method, which compares the desired
+distribution against a distribution which is similar and known
+analytically.  This usually requires several samples from the generator.
+
+   The library also provides cumulative distribution functions and
+inverse cumulative distribution functions, sometimes referred to as
+quantile functions.  The cumulative distribution functions and their
+inverses are computed separately for the upper and lower tails of the
+distribution, allowing full accuracy to be retained for small results.
+
+   The functions for random variates and probability density functions
+described in this section are declared in `gsl_randist.h'.  The
+corresponding cumulative distribution functions are declared in
+`gsl_cdf.h'.
+
+   Note that the discrete random variate functions always return a
+value of type `unsigned int', and on most platforms this has a maximum
+value of 2^32-1 ~=~ 4.29e9. They should only be called with a safe
+range of parameters (where there is a negligible probability of a
+variate exceeding this limit) to prevent incorrect results due to
+overflow.
+
+* Menu:
+
+* Random Number Distribution Introduction::
+* The Gaussian Distribution::
+* The Gaussian Tail Distribution::
+* The Bivariate Gaussian Distribution::
+* The Exponential Distribution::
+* The Laplace Distribution::
+* The Exponential Power Distribution::
+* The Cauchy Distribution::
+* The Rayleigh Distribution::
+* The Rayleigh Tail Distribution::
+* The Landau Distribution::
+* The Levy alpha-Stable Distributions::
+* The Levy skew alpha-Stable Distribution::
+* The Gamma Distribution::
+* The Flat (Uniform) Distribution::
+* The Lognormal Distribution::
+* The Chi-squared Distribution::
+* The F-distribution::
+* The t-distribution::
+* The Beta Distribution::
+* The Logistic Distribution::
+* The Pareto Distribution::
+* Spherical Vector Distributions::
+* The Weibull Distribution::
+* The Type-1 Gumbel Distribution::
+* The Type-2 Gumbel Distribution::
+* The Dirichlet Distribution::
+* General Discrete Distributions::
+* The Poisson Distribution::
+* The Bernoulli Distribution::
+* The Binomial Distribution::
+* The Multinomial Distribution::
+* The Negative Binomial Distribution::
+* The Pascal Distribution::
+* The Geometric Distribution::
+* The Hypergeometric Distribution::
+* The Logarithmic Distribution::
+* Shuffling and Sampling::
+* Random Number Distribution Examples::
+* Random Number Distribution References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Random Number Distribution Introduction,  Next: The Gaussian Distribution,  Up: Random Number Distributions
+
+20.1 Introduction
+=================
+
+Continuous random number distributions are defined by a probability
+density function, p(x), such that the probability of x occurring in the
+infinitesimal range x to x+dx is p dx.
+
+   The cumulative distribution function for the lower tail P(x) is
+defined by the integral,
+
+     P(x) = \int_{-\infty}^{x} dx' p(x')
+
+and gives the probability of a variate taking a value less than x.
+
+   The cumulative distribution function for the upper tail Q(x) is
+defined by the integral,
+
+     Q(x) = \int_{x}^{+\infty} dx' p(x')
+
+and gives the probability of a variate taking a value greater than x.
+
+   The upper and lower cumulative distribution functions are related by
+P(x) + Q(x) = 1 and satisfy 0 <= P(x) <= 1, 0 <= Q(x) <= 1.
+
+   The inverse cumulative distributions, x=P^{-1}(P) and x=Q^{-1}(Q)
+give the values of x which correspond to a specific value of P or Q.
+They can be used to find confidence limits from probability values.
+
+   For discrete distributions the probability of sampling the integer
+value k is given by p(k), where \sum_k p(k) = 1.  The cumulative
+distribution for the lower tail P(k) of a discrete distribution is
+defined as,
+
+     P(k) = \sum_{i <= k} p(i)
+
+where the sum is over the allowed range of the distribution less than
+or equal to k.
+
+   The cumulative distribution for the upper tail of a discrete
+distribution Q(k) is defined as
+
+     Q(k) = \sum_{i > k} p(i)
+
+giving the sum of probabilities for all values greater than k.  These
+two definitions satisfy the identity P(k)+Q(k)=1.
+
+   If the range of the distribution is 1 to n inclusive then P(n)=1,
+Q(n)=0 while P(1) = p(1), Q(1)=1-p(1).
+
+\1f
+File: gsl-ref.info,  Node: The Gaussian Distribution,  Next: The Gaussian Tail Distribution,  Prev: Random Number Distribution Introduction,  Up: Random Number Distributions
+
+20.2 The Gaussian Distribution
+==============================
+
+ -- Function: double gsl_ran_gaussian (const gsl_rng * R, double SIGMA)
+     This function returns a Gaussian random variate, with mean zero and
+     standard deviation SIGMA.  The probability distribution for
+     Gaussian random variates is,
+
+          p(x) dx = {1 \over \sqrt{2 \pi \sigma^2}} \exp (-x^2 / 2\sigma^2) dx
+
+     for x in the range -\infty to +\infty.  Use the transformation z =
+     \mu + x on the numbers returned by `gsl_ran_gaussian' to obtain a
+     Gaussian distribution with mean \mu.  This function uses the
+     Box-Muller algorithm which requires two calls to the random number
+     generator R.
+
+ -- Function: double gsl_ran_gaussian_pdf (double X, double SIGMA)
+     This function computes the probability density p(x) at X for a
+     Gaussian distribution with standard deviation SIGMA, using the
+     formula given above.
+
+
+ -- Function: double gsl_ran_gaussian_ziggurat (const gsl_rng * R,
+          double SIGMA)
+ -- Function: double gsl_ran_gaussian_ratio_method (const gsl_rng * R,
+          double SIGMA)
+     This function computes a Gaussian random variate using the
+     alternative Marsaglia-Tsang ziggurat and Kinderman-Monahan-Leva
+     ratio methods.  The Ziggurat algorithm is the fastest available
+     algorithm in most cases.
+
+ -- Function: double gsl_ran_ugaussian (const gsl_rng * R)
+ -- Function: double gsl_ran_ugaussian_pdf (double X)
+ -- Function: double gsl_ran_ugaussian_ratio_method (const gsl_rng * R)
+     These functions compute results for the unit Gaussian
+     distribution.  They are equivalent to the functions above with a
+     standard deviation of one, SIGMA = 1.
+
+ -- Function: double gsl_cdf_gaussian_P (double X, double SIGMA)
+ -- Function: double gsl_cdf_gaussian_Q (double X, double SIGMA)
+ -- Function: double gsl_cdf_gaussian_Pinv (double P, double SIGMA)
+ -- Function: double gsl_cdf_gaussian_Qinv (double Q, double SIGMA)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the Gaussian distribution with
+     standard deviation SIGMA.
+
+ -- Function: double gsl_cdf_ugaussian_P (double X)
+ -- Function: double gsl_cdf_ugaussian_Q (double X)
+ -- Function: double gsl_cdf_ugaussian_Pinv (double P)
+ -- Function: double gsl_cdf_ugaussian_Qinv (double Q)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the unit Gaussian distribution.
+
+\1f
+File: gsl-ref.info,  Node: The Gaussian Tail Distribution,  Next: The Bivariate Gaussian Distribution,  Prev: The Gaussian Distribution,  Up: Random Number Distributions
+
+20.3 The Gaussian Tail Distribution
+===================================
+
+ -- Function: double gsl_ran_gaussian_tail (const gsl_rng * R, double
+          A, double SIGMA)
+     This function provides random variates from the upper tail of a
+     Gaussian distribution with standard deviation SIGMA.  The values
+     returned are larger than the lower limit A, which must be
+     positive.  The method is based on Marsaglia's famous
+     rectangle-wedge-tail algorithm (Ann.  Math. Stat. 32, 894-899
+     (1961)), with this aspect explained in Knuth, v2, 3rd ed, p139,586
+     (exercise 11).
+
+     The probability distribution for Gaussian tail random variates is,
+
+          p(x) dx = {1 \over N(a;\sigma) \sqrt{2 \pi \sigma^2}} \exp (- x^2/(2 \sigma^2)) dx
+
+     for x > a where N(a;\sigma) is the normalization constant,
+
+          N(a;\sigma) = (1/2) erfc(a / sqrt(2 sigma^2)).
+
+
+ -- Function: double gsl_ran_gaussian_tail_pdf (double X, double A,
+          double SIGMA)
+     This function computes the probability density p(x) at X for a
+     Gaussian tail distribution with standard deviation SIGMA and lower
+     limit A, using the formula given above.
+
+
+ -- Function: double gsl_ran_ugaussian_tail (const gsl_rng * R, double
+          A)
+ -- Function: double gsl_ran_ugaussian_tail_pdf (double X, double A)
+     These functions compute results for the tail of a unit Gaussian
+     distribution.  They are equivalent to the functions above with a
+     standard deviation of one, SIGMA = 1.
+
+\1f
+File: gsl-ref.info,  Node: The Bivariate Gaussian Distribution,  Next: The Exponential Distribution,  Prev: The Gaussian Tail Distribution,  Up: Random Number Distributions
+
+20.4 The Bivariate Gaussian Distribution
+========================================
+
+ -- Function: void gsl_ran_bivariate_gaussian (const gsl_rng * R,
+          double SIGMA_X, double SIGMA_Y, double RHO, double * X,
+          double * Y)
+     This function generates a pair of correlated Gaussian variates,
+     with mean zero, correlation coefficient RHO and standard deviations
+     SIGMA_X and SIGMA_Y in the x and y directions.  The probability
+     distribution for bivariate Gaussian random variates is,
+
+          p(x,y) dx dy = {1 \over 2 \pi \sigma_x \sigma_y \sqrt{1-\rho^2}} \exp (-(x^2/\sigma_x^2 + y^2/\sigma_y^2 - 2 \rho x y/(\sigma_x\sigma_y))/2(1-\rho^2)) dx dy
+
+     for x,y in the range -\infty to +\infty.  The correlation
+     coefficient RHO should lie between 1 and -1.
+
+ -- Function: double gsl_ran_bivariate_gaussian_pdf (double X, double
+          Y, double SIGMA_X, double SIGMA_Y, double RHO)
+     This function computes the probability density p(x,y) at (X,Y) for
+     a bivariate Gaussian distribution with standard deviations
+     SIGMA_X, SIGMA_Y and correlation coefficient RHO, using the
+     formula given above.
+
+
+\1f
+File: gsl-ref.info,  Node: The Exponential Distribution,  Next: The Laplace Distribution,  Prev: The Bivariate Gaussian Distribution,  Up: Random Number Distributions
+
+20.5 The Exponential Distribution
+=================================
+
+ -- Function: double gsl_ran_exponential (const gsl_rng * R, double MU)
+     This function returns a random variate from the exponential
+     distribution with mean MU. The distribution is,
+
+          p(x) dx = {1 \over \mu} \exp(-x/\mu) dx
+
+     for x >= 0.
+
+ -- Function: double gsl_ran_exponential_pdf (double X, double MU)
+     This function computes the probability density p(x) at X for an
+     exponential distribution with mean MU, using the formula given
+     above.
+
+
+ -- Function: double gsl_cdf_exponential_P (double X, double MU)
+ -- Function: double gsl_cdf_exponential_Q (double X, double MU)
+ -- Function: double gsl_cdf_exponential_Pinv (double P, double MU)
+ -- Function: double gsl_cdf_exponential_Qinv (double Q, double MU)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the exponential distribution
+     with mean MU.
+
+\1f
+File: gsl-ref.info,  Node: The Laplace Distribution,  Next: The Exponential Power Distribution,  Prev: The Exponential Distribution,  Up: Random Number Distributions
+
+20.6 The Laplace Distribution
+=============================
+
+ -- Function: double gsl_ran_laplace (const gsl_rng * R, double A)
+     This function returns a random variate from the Laplace
+     distribution with width A.  The distribution is,
+
+          p(x) dx = {1 \over 2 a}  \exp(-|x/a|) dx
+
+     for -\infty < x < \infty.
+
+ -- Function: double gsl_ran_laplace_pdf (double X, double A)
+     This function computes the probability density p(x) at X for a
+     Laplace distribution with width A, using the formula given above.
+
+
+ -- Function: double gsl_cdf_laplace_P (double X, double A)
+ -- Function: double gsl_cdf_laplace_Q (double X, double A)
+ -- Function: double gsl_cdf_laplace_Pinv (double P, double A)
+ -- Function: double gsl_cdf_laplace_Qinv (double Q, double A)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the Laplace distribution with
+     width A.
+
+\1f
+File: gsl-ref.info,  Node: The Exponential Power Distribution,  Next: The Cauchy Distribution,  Prev: The Laplace Distribution,  Up: Random Number Distributions
+
+20.7 The Exponential Power Distribution
+=======================================
+
+ -- Function: double gsl_ran_exppow (const gsl_rng * R, double A,
+          double B)
+     This function returns a random variate from the exponential power
+     distribution with scale parameter A and exponent B.  The
+     distribution is,
+
+          p(x) dx = {1 \over 2 a \Gamma(1+1/b)} \exp(-|x/a|^b) dx
+
+     for x >= 0.  For b = 1 this reduces to the Laplace distribution.
+     For b = 2 it has the same form as a Gaussian distribution, but
+     with a = \sqrt{2} \sigma.
+
+ -- Function: double gsl_ran_exppow_pdf (double X, double A, double B)
+     This function computes the probability density p(x) at X for an
+     exponential power distribution with scale parameter A and exponent
+     B, using the formula given above.
+
+
+ -- Function: double gsl_cdf_exppow_P (double X, double A, double B)
+ -- Function: double gsl_cdf_exppow_Q (double X, double A, double B)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) for the exponential power distribution with parameters
+     A and B.
+
+\1f
+File: gsl-ref.info,  Node: The Cauchy Distribution,  Next: The Rayleigh Distribution,  Prev: The Exponential Power Distribution,  Up: Random Number Distributions
+
+20.8 The Cauchy Distribution
+============================
+
+ -- Function: double gsl_ran_cauchy (const gsl_rng * R, double A)
+     This function returns a random variate from the Cauchy
+     distribution with scale parameter A.  The probability distribution
+     for Cauchy random variates is,
+
+          p(x) dx = {1 \over a\pi (1 + (x/a)^2) } dx
+
+     for x in the range -\infty to +\infty.  The Cauchy distribution is
+     also known as the Lorentz distribution.
+
+ -- Function: double gsl_ran_cauchy_pdf (double X, double A)
+     This function computes the probability density p(x) at X for a
+     Cauchy distribution with scale parameter A, using the formula
+     given above.
+
+
+ -- Function: double gsl_cdf_cauchy_P (double X, double A)
+ -- Function: double gsl_cdf_cauchy_Q (double X, double A)
+ -- Function: double gsl_cdf_cauchy_Pinv (double P, double A)
+ -- Function: double gsl_cdf_cauchy_Qinv (double Q, double A)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the Cauchy distribution with
+     scale parameter A.
+
+\1f
+File: gsl-ref.info,  Node: The Rayleigh Distribution,  Next: The Rayleigh Tail Distribution,  Prev: The Cauchy Distribution,  Up: Random Number Distributions
+
+20.9 The Rayleigh Distribution
+==============================
+
+ -- Function: double gsl_ran_rayleigh (const gsl_rng * R, double SIGMA)
+     This function returns a random variate from the Rayleigh
+     distribution with scale parameter SIGMA.  The distribution is,
+
+          p(x) dx = {x \over \sigma^2} \exp(- x^2/(2 \sigma^2)) dx
+
+     for x > 0.
+
+ -- Function: double gsl_ran_rayleigh_pdf (double X, double SIGMA)
+     This function computes the probability density p(x) at X for a
+     Rayleigh distribution with scale parameter SIGMA, using the
+     formula given above.
+
+
+ -- Function: double gsl_cdf_rayleigh_P (double X, double SIGMA)
+ -- Function: double gsl_cdf_rayleigh_Q (double X, double SIGMA)
+ -- Function: double gsl_cdf_rayleigh_Pinv (double P, double SIGMA)
+ -- Function: double gsl_cdf_rayleigh_Qinv (double Q, double SIGMA)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the Rayleigh distribution with
+     scale parameter SIGMA.
+
+\1f
+File: gsl-ref.info,  Node: The Rayleigh Tail Distribution,  Next: The Landau Distribution,  Prev: The Rayleigh Distribution,  Up: Random Number Distributions
+
+20.10 The Rayleigh Tail Distribution
+====================================
+
+ -- Function: double gsl_ran_rayleigh_tail (const gsl_rng * R, double
+          A, double SIGMA)
+     This function returns a random variate from the tail of the
+     Rayleigh distribution with scale parameter SIGMA and a lower limit
+     of A.  The distribution is,
+
+          p(x) dx = {x \over \sigma^2} \exp ((a^2 - x^2) /(2 \sigma^2)) dx
+
+     for x > a.
+
+ -- Function: double gsl_ran_rayleigh_tail_pdf (double X, double A,
+          double SIGMA)
+     This function computes the probability density p(x) at X for a
+     Rayleigh tail distribution with scale parameter SIGMA and lower
+     limit A, using the formula given above.
+
+
+\1f
+File: gsl-ref.info,  Node: The Landau Distribution,  Next: The Levy alpha-Stable Distributions,  Prev: The Rayleigh Tail Distribution,  Up: Random Number Distributions
+
+20.11 The Landau Distribution
+=============================
+
+ -- Function: double gsl_ran_landau (const gsl_rng * R)
+     This function returns a random variate from the Landau
+     distribution.  The probability distribution for Landau random
+     variates is defined analytically by the complex integral,
+
+          p(x) = (1/(2 \pi i)) \int_{c-i\infty}^{c+i\infty} ds exp(s log(s) + x s)
+     For numerical purposes it is more convenient to use the following
+     equivalent form of the integral,
+
+          p(x) = (1/\pi) \int_0^\infty dt \exp(-t \log(t) - x t) \sin(\pi t).
+
+ -- Function: double gsl_ran_landau_pdf (double X)
+     This function computes the probability density p(x) at X for the
+     Landau distribution using an approximation to the formula given
+     above.
+
+
+\1f
+File: gsl-ref.info,  Node: The Levy alpha-Stable Distributions,  Next: The Levy skew alpha-Stable Distribution,  Prev: The Landau Distribution,  Up: Random Number Distributions
+
+20.12 The Levy alpha-Stable Distributions
+=========================================
+
+ -- Function: double gsl_ran_levy (const gsl_rng * R, double C, double
+          ALPHA)
+     This function returns a random variate from the Levy symmetric
+     stable distribution with scale C and exponent ALPHA.  The symmetric
+     stable probability distribution is defined by a Fourier transform,
+
+          p(x) = {1 \over 2 \pi} \int_{-\infty}^{+\infty} dt \exp(-it x - |c t|^alpha)
+
+     There is no explicit solution for the form of p(x) and the library
+     does not define a corresponding `pdf' function.  For \alpha = 1
+     the distribution reduces to the Cauchy distribution.  For \alpha =
+     2 it is a Gaussian distribution with \sigma = \sqrt{2} c.  For
+     \alpha < 1 the tails of the distribution become extremely wide.
+
+     The algorithm only works for 0 < alpha <= 2.
+
+
+\1f
+File: gsl-ref.info,  Node: The Levy skew alpha-Stable Distribution,  Next: The Gamma Distribution,  Prev: The Levy alpha-Stable Distributions,  Up: Random Number Distributions
+
+20.13 The Levy skew alpha-Stable Distribution
+=============================================
+
+ -- Function: double gsl_ran_levy_skew (const gsl_rng * R, double C,
+          double ALPHA, double BETA)
+     This function returns a random variate from the Levy skew stable
+     distribution with scale C, exponent ALPHA and skewness parameter
+     BETA.  The skewness parameter must lie in the range [-1,1].  The
+     Levy skew stable probability distribution is defined by a Fourier
+     transform,
+
+          p(x) = {1 \over 2 \pi} \int_{-\infty}^{+\infty} dt \exp(-it x - |c t|^alpha (1-i beta sign(t) tan(pi alpha/2)))
+
+     When \alpha = 1 the term \tan(\pi \alpha/2) is replaced by
+     -(2/\pi)\log|t|.  There is no explicit solution for the form of
+     p(x) and the library does not define a corresponding `pdf'
+     function.  For \alpha = 2 the distribution reduces to a Gaussian
+     distribution with \sigma = \sqrt{2} c and the skewness parameter
+     has no effect.  For \alpha < 1 the tails of the distribution
+     become extremely wide.  The symmetric distribution corresponds to
+     \beta = 0.
+
+     The algorithm only works for 0 < alpha <= 2.
+
+   The Levy alpha-stable distributions have the property that if N
+alpha-stable variates are drawn from the distribution p(c, \alpha,
+\beta) then the sum Y = X_1 + X_2 + \dots + X_N will also be
+distributed as an alpha-stable variate, p(N^(1/\alpha) c, \alpha,
+\beta).
+
+
+\1f
+File: gsl-ref.info,  Node: The Gamma Distribution,  Next: The Flat (Uniform) Distribution,  Prev: The Levy skew alpha-Stable Distribution,  Up: Random Number Distributions
+
+20.14 The Gamma Distribution
+============================
+
+ -- Function: double gsl_ran_gamma (const gsl_rng * R, double A, double
+          B)
+     This function returns a random variate from the gamma
+     distribution.  The distribution function is,
+
+          p(x) dx = {1 \over \Gamma(a) b^a} x^{a-1} e^{-x/b} dx
+
+     for x > 0.
+
+     The gamma distribution with an integer parameter A is known as the
+     Erlang distribution.
+
+     The variates are computed using the Marsaglia-Tsang fast gamma
+     method.  This function for this method was previously called
+     `gsl_ran_gamma_mt' and can still be accessed using this name.
+
+ -- Function: double gsl_ran_gamma_knuth (const gsl_rng * R, double A,
+          double B)
+     This function returns a gamma variate using the algorithms from
+     Knuth (vol 2).
+
+ -- Function: double gsl_ran_gamma_pdf (double X, double A, double B)
+     This function computes the probability density p(x) at X for a
+     gamma distribution with parameters A and B, using the formula
+     given above.
+
+
+ -- Function: double gsl_cdf_gamma_P (double X, double A, double B)
+ -- Function: double gsl_cdf_gamma_Q (double X, double A, double B)
+ -- Function: double gsl_cdf_gamma_Pinv (double P, double A, double B)
+ -- Function: double gsl_cdf_gamma_Qinv (double Q, double A, double B)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the gamma distribution with
+     parameters A and B.
+
+\1f
+File: gsl-ref.info,  Node: The Flat (Uniform) Distribution,  Next: The Lognormal Distribution,  Prev: The Gamma Distribution,  Up: Random Number Distributions
+
+20.15 The Flat (Uniform) Distribution
+=====================================
+
+ -- Function: double gsl_ran_flat (const gsl_rng * R, double A, double
+          B)
+     This function returns a random variate from the flat (uniform)
+     distribution from A to B. The distribution is,
+
+          p(x) dx = {1 \over (b-a)} dx
+
+     if a <= x < b and 0 otherwise.
+
+ -- Function: double gsl_ran_flat_pdf (double X, double A, double B)
+     This function computes the probability density p(x) at X for a
+     uniform distribution from A to B, using the formula given above.
+
+
+ -- Function: double gsl_cdf_flat_P (double X, double A, double B)
+ -- Function: double gsl_cdf_flat_Q (double X, double A, double B)
+ -- Function: double gsl_cdf_flat_Pinv (double P, double A, double B)
+ -- Function: double gsl_cdf_flat_Qinv (double Q, double A, double B)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for a uniform distribution from A to
+     B.
+
+\1f
+File: gsl-ref.info,  Node: The Lognormal Distribution,  Next: The Chi-squared Distribution,  Prev: The Flat (Uniform) Distribution,  Up: Random Number Distributions
+
+20.16 The Lognormal Distribution
+================================
+
+ -- Function: double gsl_ran_lognormal (const gsl_rng * R, double ZETA,
+          double SIGMA)
+     This function returns a random variate from the lognormal
+     distribution.  The distribution function is,
+
+          p(x) dx = {1 \over x \sqrt{2 \pi \sigma^2} } \exp(-(\ln(x) - \zeta)^2/2 \sigma^2) dx
+
+     for x > 0.
+
+ -- Function: double gsl_ran_lognormal_pdf (double X, double ZETA,
+          double SIGMA)
+     This function computes the probability density p(x) at X for a
+     lognormal distribution with parameters ZETA and SIGMA, using the
+     formula given above.
+
+
+ -- Function: double gsl_cdf_lognormal_P (double X, double ZETA, double
+          SIGMA)
+ -- Function: double gsl_cdf_lognormal_Q (double X, double ZETA, double
+          SIGMA)
+ -- Function: double gsl_cdf_lognormal_Pinv (double P, double ZETA,
+          double SIGMA)
+ -- Function: double gsl_cdf_lognormal_Qinv (double Q, double ZETA,
+          double SIGMA)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the lognormal distribution with
+     parameters ZETA and SIGMA.
+
+\1f
+File: gsl-ref.info,  Node: The Chi-squared Distribution,  Next: The F-distribution,  Prev: The Lognormal Distribution,  Up: Random Number Distributions
+
+20.17 The Chi-squared Distribution
+==================================
+
+The chi-squared distribution arises in statistics.  If Y_i are n
+independent Gaussian random variates with unit variance then the
+sum-of-squares,
+
+     X_i = \sum_i Y_i^2
+
+has a chi-squared distribution with n degrees of freedom.
+
+ -- Function: double gsl_ran_chisq (const gsl_rng * R, double NU)
+     This function returns a random variate from the chi-squared
+     distribution with NU degrees of freedom. The distribution function
+     is,
+
+          p(x) dx = {1 \over 2 \Gamma(\nu/2) } (x/2)^{\nu/2 - 1} \exp(-x/2) dx
+
+     for x >= 0.
+
+ -- Function: double gsl_ran_chisq_pdf (double X, double NU)
+     This function computes the probability density p(x) at X for a
+     chi-squared distribution with NU degrees of freedom, using the
+     formula given above.
+
+
+ -- Function: double gsl_cdf_chisq_P (double X, double NU)
+ -- Function: double gsl_cdf_chisq_Q (double X, double NU)
+ -- Function: double gsl_cdf_chisq_Pinv (double P, double NU)
+ -- Function: double gsl_cdf_chisq_Qinv (double Q, double NU)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the chi-squared distribution
+     with NU degrees of freedom.
+
+\1f
+File: gsl-ref.info,  Node: The F-distribution,  Next: The t-distribution,  Prev: The Chi-squared Distribution,  Up: Random Number Distributions
+
+20.18 The F-distribution
+========================
+
+The F-distribution arises in statistics.  If Y_1 and Y_2 are
+chi-squared deviates with \nu_1 and \nu_2 degrees of freedom then the
+ratio,
+
+     X = { (Y_1 / \nu_1) \over (Y_2 / \nu_2) }
+
+has an F-distribution F(x;\nu_1,\nu_2).
+
+ -- Function: double gsl_ran_fdist (const gsl_rng * R, double NU1,
+          double NU2)
+     This function returns a random variate from the F-distribution
+     with degrees of freedom NU1 and NU2. The distribution function is,
+
+          p(x) dx =
+             { \Gamma((\nu_1 + \nu_2)/2)
+                  \over \Gamma(\nu_1/2) \Gamma(\nu_2/2) }
+             \nu_1^{\nu_1/2} \nu_2^{\nu_2/2}
+             x^{\nu_1/2 - 1} (\nu_2 + \nu_1 x)^{-\nu_1/2 -\nu_2/2}
+
+     for x >= 0.
+
+ -- Function: double gsl_ran_fdist_pdf (double X, double NU1, double
+          NU2)
+     This function computes the probability density p(x) at X for an
+     F-distribution with NU1 and NU2 degrees of freedom, using the
+     formula given above.
+
+
+ -- Function: double gsl_cdf_fdist_P (double X, double NU1, double NU2)
+ -- Function: double gsl_cdf_fdist_Q (double X, double NU1, double NU2)
+ -- Function: double gsl_cdf_fdist_Pinv (double P, double NU1, double
+          NU2)
+ -- Function: double gsl_cdf_fdist_Qinv (double Q, double NU1, double
+          NU2)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the F-distribution with NU1 and
+     NU2 degrees of freedom.
+
+\1f
+File: gsl-ref.info,  Node: The t-distribution,  Next: The Beta Distribution,  Prev: The F-distribution,  Up: Random Number Distributions
+
+20.19 The t-distribution
+========================
+
+The t-distribution arises in statistics.  If Y_1 has a normal
+distribution and Y_2 has a chi-squared distribution with \nu degrees of
+freedom then the ratio,
+
+     X = { Y_1 \over \sqrt{Y_2 / \nu} }
+
+has a t-distribution t(x;\nu) with \nu degrees of freedom.
+
+ -- Function: double gsl_ran_tdist (const gsl_rng * R, double NU)
+     This function returns a random variate from the t-distribution.
+     The distribution function is,
+
+          p(x) dx = {\Gamma((\nu + 1)/2) \over \sqrt{\pi \nu} \Gamma(\nu/2)}
+             (1 + x^2/\nu)^{-(\nu + 1)/2} dx
+
+     for -\infty < x < +\infty.
+
+ -- Function: double gsl_ran_tdist_pdf (double X, double NU)
+     This function computes the probability density p(x) at X for a
+     t-distribution with NU degrees of freedom, using the formula given
+     above.
+
+
+ -- Function: double gsl_cdf_tdist_P (double X, double NU)
+ -- Function: double gsl_cdf_tdist_Q (double X, double NU)
+ -- Function: double gsl_cdf_tdist_Pinv (double P, double NU)
+ -- Function: double gsl_cdf_tdist_Qinv (double Q, double NU)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the t-distribution with NU
+     degrees of freedom.
+
+\1f
+File: gsl-ref.info,  Node: The Beta Distribution,  Next: The Logistic Distribution,  Prev: The t-distribution,  Up: Random Number Distributions
+
+20.20 The Beta Distribution
+===========================
+
+ -- Function: double gsl_ran_beta (const gsl_rng * R, double A, double
+          B)
+     This function returns a random variate from the beta distribution.
+     The distribution function is,
+
+          p(x) dx = {\Gamma(a+b) \over \Gamma(a) \Gamma(b)} x^{a-1} (1-x)^{b-1} dx
+
+     for 0 <= x <= 1.
+
+ -- Function: double gsl_ran_beta_pdf (double X, double A, double B)
+     This function computes the probability density p(x) at X for a
+     beta distribution with parameters A and B, using the formula given
+     above.
+
+
+ -- Function: double gsl_cdf_beta_P (double X, double A, double B)
+ -- Function: double gsl_cdf_beta_Q (double X, double A, double B)
+ -- Function: double gsl_cdf_beta_Pinv (double P, double A, double B)
+ -- Function: double gsl_cdf_beta_Qinv (double Q, double A, double B)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the beta distribution with
+     parameters A and B.
+
+\1f
+File: gsl-ref.info,  Node: The Logistic Distribution,  Next: The Pareto Distribution,  Prev: The Beta Distribution,  Up: Random Number Distributions
+
+20.21 The Logistic Distribution
+===============================
+
+ -- Function: double gsl_ran_logistic (const gsl_rng * R, double A)
+     This function returns a random variate from the logistic
+     distribution.  The distribution function is,
+
+          p(x) dx = { \exp(-x/a) \over a (1 + \exp(-x/a))^2 } dx
+
+     for -\infty < x < +\infty.
+
+ -- Function: double gsl_ran_logistic_pdf (double X, double A)
+     This function computes the probability density p(x) at X for a
+     logistic distribution with scale parameter A, using the formula
+     given above.
+
+
+ -- Function: double gsl_cdf_logistic_P (double X, double A)
+ -- Function: double gsl_cdf_logistic_Q (double X, double A)
+ -- Function: double gsl_cdf_logistic_Pinv (double P, double A)
+ -- Function: double gsl_cdf_logistic_Qinv (double Q, double A)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the logistic distribution with
+     scale parameter A.
+
+\1f
+File: gsl-ref.info,  Node: The Pareto Distribution,  Next: Spherical Vector Distributions,  Prev: The Logistic Distribution,  Up: Random Number Distributions
+
+20.22 The Pareto Distribution
+=============================
+
+ -- Function: double gsl_ran_pareto (const gsl_rng * R, double A,
+          double B)
+     This function returns a random variate from the Pareto
+     distribution of order A.  The distribution function is,
+
+          p(x) dx = (a/b) / (x/b)^{a+1} dx
+
+     for x >= b.
+
+ -- Function: double gsl_ran_pareto_pdf (double X, double A, double B)
+     This function computes the probability density p(x) at X for a
+     Pareto distribution with exponent A and scale B, using the formula
+     given above.
+
+
+ -- Function: double gsl_cdf_pareto_P (double X, double A, double B)
+ -- Function: double gsl_cdf_pareto_Q (double X, double A, double B)
+ -- Function: double gsl_cdf_pareto_Pinv (double P, double A, double B)
+ -- Function: double gsl_cdf_pareto_Qinv (double Q, double A, double B)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the Pareto distribution with
+     exponent A and scale B.
+

diff --git a/util/X86LINUX64/share/info/gsl-ref.info-3 b/util/X86LINUX64/share/info/gsl-ref.info-3
new file mode 100644 (file)
index 0000000..4a0f177
--- /dev/null
+++ b/util/X86LINUX64/share/info/gsl-ref.info-3
@@ -0,0 +1,7407 @@
+This is gsl-ref.info, produced by makeinfo version 4.13 from
+gsl-ref.texi.
+
+INFO-DIR-SECTION Software libraries
+START-INFO-DIR-ENTRY
+* gsl-ref: (gsl-ref).                   GNU Scientific Library - Reference
+END-INFO-DIR-ENTRY
+
+   Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004,
+2005, 2006, 2007, 2008, 2009, 2010, 2011 The GSL Team.
+
+   Permission is granted to copy, distribute and/or modify this document
+under the terms of the GNU Free Documentation License, Version 1.3 or
+any later version published by the Free Software Foundation; with the
+Invariant Sections being "GNU General Public License" and "Free Software
+Needs Free Documentation", the Front-Cover text being "A GNU Manual",
+and with the Back-Cover Text being (a) (see below).  A copy of the
+license is included in the section entitled "GNU Free Documentation
+License".
+
+   (a) The Back-Cover Text is: "You have the freedom to copy and modify
+this GNU Manual."
+
+\1f
+File: gsl-ref.info,  Node: Spherical Vector Distributions,  Next: The Weibull Distribution,  Prev: The Pareto Distribution,  Up: Random Number Distributions
+
+20.23 Spherical Vector Distributions
+====================================
+
+The spherical distributions generate random vectors, located on a
+spherical surface.  They can be used as random directions, for example
+in the steps of a random walk.
+
+ -- Function: void gsl_ran_dir_2d (const gsl_rng * R, double * X,
+          double * Y)
+ -- Function: void gsl_ran_dir_2d_trig_method (const gsl_rng * R,
+          double * X, double * Y)
+     This function returns a random direction vector v = (X,Y) in two
+     dimensions.  The vector is normalized such that |v|^2 = x^2 + y^2
+     = 1.  The obvious way to do this is to take a uniform random
+     number between 0 and 2\pi and let X and Y be the sine and cosine
+     respectively.  Two trig functions would have been expensive in the
+     old days, but with modern hardware implementations, this is
+     sometimes the fastest way to go.  This is the case for the Pentium
+     (but not the case for the Sun Sparcstation).  One can avoid the
+     trig evaluations by choosing X and Y in the interior of a unit
+     circle (choose them at random from the interior of the enclosing
+     square, and then reject those that are outside the unit circle),
+     and then dividing by \sqrt{x^2 + y^2}.  A much cleverer approach,
+     attributed to von Neumann (See Knuth, v2, 3rd ed, p140, exercise
+     23), requires neither trig nor a square root.  In this approach, U
+     and V are chosen at random from the interior of a unit circle, and
+     then x=(u^2-v^2)/(u^2+v^2) and y=2uv/(u^2+v^2).
+
+ -- Function: void gsl_ran_dir_3d (const gsl_rng * R, double * X,
+          double * Y, double * Z)
+     This function returns a random direction vector v = (X,Y,Z) in
+     three dimensions.  The vector is normalized such that |v|^2 = x^2
+     + y^2 + z^2 = 1.  The method employed is due to Robert E. Knop
+     (CACM 13, 326 (1970)), and explained in Knuth, v2, 3rd ed, p136.
+     It uses the surprising fact that the distribution projected along
+     any axis is actually uniform (this is only true for 3 dimensions).
+
+ -- Function: void gsl_ran_dir_nd (const gsl_rng * R, size_t N, double
+          * X)
+     This function returns a random direction vector v =
+     (x_1,x_2,...,x_n) in N dimensions.  The vector is normalized such
+     that |v|^2 = x_1^2 + x_2^2 + ... + x_n^2 = 1.  The method uses the
+     fact that a multivariate Gaussian distribution is spherically
+     symmetric.  Each component is generated to have a Gaussian
+     distribution, and then the components are normalized.  The method
+     is described by Knuth, v2, 3rd ed, p135-136, and attributed to G.
+     W. Brown, Modern Mathematics for the Engineer (1956).
+
+\1f
+File: gsl-ref.info,  Node: The Weibull Distribution,  Next: The Type-1 Gumbel Distribution,  Prev: Spherical Vector Distributions,  Up: Random Number Distributions
+
+20.24 The Weibull Distribution
+==============================
+
+ -- Function: double gsl_ran_weibull (const gsl_rng * R, double A,
+          double B)
+     This function returns a random variate from the Weibull
+     distribution.  The distribution function is,
+
+          p(x) dx = {b \over a^b} x^{b-1}  \exp(-(x/a)^b) dx
+
+     for x >= 0.
+
+ -- Function: double gsl_ran_weibull_pdf (double X, double A, double B)
+     This function computes the probability density p(x) at X for a
+     Weibull distribution with scale A and exponent B, using the
+     formula given above.
+
+
+ -- Function: double gsl_cdf_weibull_P (double X, double A, double B)
+ -- Function: double gsl_cdf_weibull_Q (double X, double A, double B)
+ -- Function: double gsl_cdf_weibull_Pinv (double P, double A, double B)
+ -- Function: double gsl_cdf_weibull_Qinv (double Q, double A, double B)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the Weibull distribution with
+     scale A and exponent B.
+
+\1f
+File: gsl-ref.info,  Node: The Type-1 Gumbel Distribution,  Next: The Type-2 Gumbel Distribution,  Prev: The Weibull Distribution,  Up: Random Number Distributions
+
+20.25 The Type-1 Gumbel Distribution
+====================================
+
+ -- Function: double gsl_ran_gumbel1 (const gsl_rng * R, double A,
+          double B)
+     This function returns  a random variate from the Type-1 Gumbel
+     distribution.  The Type-1 Gumbel distribution function is,
+
+          p(x) dx = a b \exp(-(b \exp(-ax) + ax)) dx
+
+     for -\infty < x < \infty.
+
+ -- Function: double gsl_ran_gumbel1_pdf (double X, double A, double B)
+     This function computes the probability density p(x) at X for a
+     Type-1 Gumbel distribution with parameters A and B, using the
+     formula given above.
+
+
+ -- Function: double gsl_cdf_gumbel1_P (double X, double A, double B)
+ -- Function: double gsl_cdf_gumbel1_Q (double X, double A, double B)
+ -- Function: double gsl_cdf_gumbel1_Pinv (double P, double A, double B)
+ -- Function: double gsl_cdf_gumbel1_Qinv (double Q, double A, double B)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the Type-1 Gumbel distribution
+     with parameters A and B.
+
+\1f
+File: gsl-ref.info,  Node: The Type-2 Gumbel Distribution,  Next: The Dirichlet Distribution,  Prev: The Type-1 Gumbel Distribution,  Up: Random Number Distributions
+
+20.26 The Type-2 Gumbel Distribution
+====================================
+
+ -- Function: double gsl_ran_gumbel2 (const gsl_rng * R, double A,
+          double B)
+     This function returns a random variate from the Type-2 Gumbel
+     distribution.  The Type-2 Gumbel distribution function is,
+
+          p(x) dx = a b x^{-a-1} \exp(-b x^{-a}) dx
+
+     for 0 < x < \infty.
+
+ -- Function: double gsl_ran_gumbel2_pdf (double X, double A, double B)
+     This function computes the probability density p(x) at X for a
+     Type-2 Gumbel distribution with parameters A and B, using the
+     formula given above.
+
+
+ -- Function: double gsl_cdf_gumbel2_P (double X, double A, double B)
+ -- Function: double gsl_cdf_gumbel2_Q (double X, double A, double B)
+ -- Function: double gsl_cdf_gumbel2_Pinv (double P, double A, double B)
+ -- Function: double gsl_cdf_gumbel2_Qinv (double Q, double A, double B)
+     These functions compute the cumulative distribution functions
+     P(x), Q(x) and their inverses for the Type-2 Gumbel distribution
+     with parameters A and B.
+
+\1f
+File: gsl-ref.info,  Node: The Dirichlet Distribution,  Next: General Discrete Distributions,  Prev: The Type-2 Gumbel Distribution,  Up: Random Number Distributions
+
+20.27 The Dirichlet Distribution
+================================
+
+ -- Function: void gsl_ran_dirichlet (const gsl_rng * R, size_t K,
+          const double ALPHA[], double THETA[])
+     This function returns an array of K random variates from a
+     Dirichlet distribution of order K-1. The distribution function is
+
+          p(\theta_1, ..., \theta_K) d\theta_1 ... d\theta_K =
+            (1/Z) \prod_{i=1}^K \theta_i^{\alpha_i - 1} \delta(1 -\sum_{i=1}^K \theta_i) d\theta_1 ... d\theta_K
+
+     for theta_i >= 0 and alpha_i > 0.  The delta function ensures that
+     \sum \theta_i = 1.  The normalization factor Z is
+
+          Z = {\prod_{i=1}^K \Gamma(\alpha_i)} / {\Gamma( \sum_{i=1}^K \alpha_i)}
+
+     The random variates are generated by sampling K values from gamma
+     distributions with parameters a=alpha_i, b=1, and renormalizing.
+     See A.M. Law, W.D. Kelton, `Simulation Modeling and Analysis'
+     (1991).
+
+ -- Function: double gsl_ran_dirichlet_pdf (size_t K, const double
+          ALPHA[], const double THETA[])
+     This function computes the probability density p(\theta_1, ... ,
+     \theta_K) at THETA[K] for a Dirichlet distribution with parameters
+     ALPHA[K], using the formula given above.
+
+ -- Function: double gsl_ran_dirichlet_lnpdf (size_t K, const double
+          ALPHA[], const double THETA[])
+     This function computes the logarithm of the probability density
+     p(\theta_1, ... , \theta_K) for a Dirichlet distribution with
+     parameters ALPHA[K].
+
+\1f
+File: gsl-ref.info,  Node: General Discrete Distributions,  Next: The Poisson Distribution,  Prev: The Dirichlet Distribution,  Up: Random Number Distributions
+
+20.28 General Discrete Distributions
+====================================
+
+Given K discrete events with different probabilities P[k], produce a
+random value k consistent with its probability.
+
+   The obvious way to do this is to preprocess the probability list by
+generating a cumulative probability array with K+1 elements:
+
+       C[0] = 0
+     C[k+1] = C[k]+P[k].
+
+Note that this construction produces C[K]=1.  Now choose a uniform
+deviate u between 0 and 1, and find the value of k such that C[k] <= u
+< C[k+1].  Although this in principle requires of order \log K steps per
+random number generation, they are fast steps, and if you use something
+like \lfloor uK \rfloor as a starting point, you can often do pretty
+well.
+
+   But faster methods have been devised.  Again, the idea is to
+preprocess the probability list, and save the result in some form of
+lookup table; then the individual calls for a random discrete event can
+go rapidly.  An approach invented by G. Marsaglia (Generating discrete
+random variables in a computer, Comm ACM 6, 37-38 (1963)) is very
+clever, and readers interested in examples of good algorithm design are
+directed to this short and well-written paper.  Unfortunately, for
+large K, Marsaglia's lookup table can be quite large.
+
+   A much better approach is due to Alastair J. Walker (An efficient
+method for generating discrete random variables with general
+distributions, ACM Trans on Mathematical Software 3, 253-256 (1977);
+see also Knuth, v2, 3rd ed, p120-121,139).  This requires two lookup
+tables, one floating point and one integer, but both only of size K.
+After preprocessing, the random numbers are generated in O(1) time,
+even for large K.  The preprocessing suggested by Walker requires
+O(K^2) effort, but that is not actually necessary, and the
+implementation provided here only takes O(K) effort.  In general, more
+preprocessing leads to faster generation of the individual random
+numbers, but a diminishing return is reached pretty early.  Knuth points
+out that the optimal preprocessing is combinatorially difficult for
+large K.
+
+   This method can be used to speed up some of the discrete random
+number generators below, such as the binomial distribution.  To use it
+for something like the Poisson Distribution, a modification would have
+to be made, since it only takes a finite set of K outcomes.
+
+ -- Function: gsl_ran_discrete_t * gsl_ran_discrete_preproc (size_t K,
+          const double * P)
+     This function returns a pointer to a structure that contains the
+     lookup table for the discrete random number generator.  The array
+     P[] contains the probabilities of the discrete events; these array
+     elements must all be positive, but they needn't add up to one (so
+     you can think of them more generally as "weights")--the
+     preprocessor will normalize appropriately.  This return value is
+     used as an argument for the `gsl_ran_discrete' function below.
+
+ -- Function: size_t gsl_ran_discrete (const gsl_rng * R, const
+          gsl_ran_discrete_t * G)
+     After the preprocessor, above, has been called, you use this
+     function to get the discrete random numbers.
+
+ -- Function: double gsl_ran_discrete_pdf (size_t K, const
+          gsl_ran_discrete_t * G)
+     Returns the probability P[k] of observing the variable K.  Since
+     P[k] is not stored as part of the lookup table, it must be
+     recomputed; this computation takes O(K), so if K is large and you
+     care about the original array P[k] used to create the lookup
+     table, then you should just keep this original array P[k] around.
+
+ -- Function: void gsl_ran_discrete_free (gsl_ran_discrete_t * G)
+     De-allocates the lookup table pointed to by G.
+
+\1f
+File: gsl-ref.info,  Node: The Poisson Distribution,  Next: The Bernoulli Distribution,  Prev: General Discrete Distributions,  Up: Random Number Distributions
+
+20.29 The Poisson Distribution
+==============================
+
+ -- Function: unsigned int gsl_ran_poisson (const gsl_rng * R, double
+          MU)
+     This function returns a random integer from the Poisson
+     distribution with mean MU.  The probability distribution for
+     Poisson variates is,
+
+          p(k) = {\mu^k \over k!} \exp(-\mu)
+
+     for k >= 0.
+
+ -- Function: double gsl_ran_poisson_pdf (unsigned int K, double MU)
+     This function computes the probability p(k) of obtaining  K from a
+     Poisson distribution with mean MU, using the formula given above.
+
+
+ -- Function: double gsl_cdf_poisson_P (unsigned int K, double MU)
+ -- Function: double gsl_cdf_poisson_Q (unsigned int K, double MU)
+     These functions compute the cumulative distribution functions
+     P(k), Q(k) for the Poisson distribution with parameter MU.
+
+\1f
+File: gsl-ref.info,  Node: The Bernoulli Distribution,  Next: The Binomial Distribution,  Prev: The Poisson Distribution,  Up: Random Number Distributions
+
+20.30 The Bernoulli Distribution
+================================
+
+ -- Function: unsigned int gsl_ran_bernoulli (const gsl_rng * R, double
+          P)
+     This function returns either 0 or 1, the result of a Bernoulli
+     trial with probability P.  The probability distribution for a
+     Bernoulli trial is,
+
+          p(0) = 1 - p
+          p(1) = p
+
+
+ -- Function: double gsl_ran_bernoulli_pdf (unsigned int K, double P)
+     This function computes the probability p(k) of obtaining K from a
+     Bernoulli distribution with probability parameter P, using the
+     formula given above.
+
+
+\1f
+File: gsl-ref.info,  Node: The Binomial Distribution,  Next: The Multinomial Distribution,  Prev: The Bernoulli Distribution,  Up: Random Number Distributions
+
+20.31 The Binomial Distribution
+===============================
+
+ -- Function: unsigned int gsl_ran_binomial (const gsl_rng * R, double
+          P, unsigned int N)
+     This function returns a random integer from the binomial
+     distribution, the number of successes in N independent trials with
+     probability P.  The probability distribution for binomial variates
+     is,
+
+          p(k) = {n! \over k! (n-k)! } p^k (1-p)^{n-k}
+
+     for 0 <= k <= n.
+
+ -- Function: double gsl_ran_binomial_pdf (unsigned int K, double P,
+          unsigned int N)
+     This function computes the probability p(k) of obtaining K from a
+     binomial distribution with parameters P and N, using the formula
+     given above.
+
+
+ -- Function: double gsl_cdf_binomial_P (unsigned int K, double P,
+          unsigned int N)
+ -- Function: double gsl_cdf_binomial_Q (unsigned int K, double P,
+          unsigned int N)
+     These functions compute the cumulative distribution functions
+     P(k), Q(k)  for the binomial distribution with parameters P and N.
+
+\1f
+File: gsl-ref.info,  Node: The Multinomial Distribution,  Next: The Negative Binomial Distribution,  Prev: The Binomial Distribution,  Up: Random Number Distributions
+
+20.32 The Multinomial Distribution
+==================================
+
+ -- Function: void gsl_ran_multinomial (const gsl_rng * R, size_t K,
+          unsigned int N, const double P[], unsigned int N[])
+     This function computes a random sample N[] from the multinomial
+     distribution formed by N trials from an underlying distribution
+     P[K]. The distribution function for N[] is,
+
+          P(n_1, n_2, ..., n_K) =
+            (N!/(n_1! n_2! ... n_K!)) p_1^n_1 p_2^n_2 ... p_K^n_K
+
+     where (n_1, n_2, ..., n_K) are nonnegative integers with
+     sum_{k=1}^K n_k = N, and (p_1, p_2, ..., p_K) is a probability
+     distribution with \sum p_i = 1.  If the array P[K] is not
+     normalized then its entries will be treated as weights and
+     normalized appropriately.  The arrays N[] and P[] must both be of
+     length K.
+
+     Random variates are generated using the conditional binomial
+     method (see C.S. Davis, `The computer generation of multinomial
+     random variates', Comp. Stat. Data Anal. 16 (1993) 205-217 for
+     details).
+
+ -- Function: double gsl_ran_multinomial_pdf (size_t K, const double
+          P[], const unsigned int N[])
+     This function computes the probability P(n_1, n_2, ..., n_K) of
+     sampling N[K] from a multinomial distribution with parameters
+     P[K], using the formula given above.
+
+ -- Function: double gsl_ran_multinomial_lnpdf (size_t K, const double
+          P[], const unsigned int N[])
+     This function returns the logarithm of the probability for the
+     multinomial distribution P(n_1, n_2, ..., n_K) with parameters
+     P[K].
+
+\1f
+File: gsl-ref.info,  Node: The Negative Binomial Distribution,  Next: The Pascal Distribution,  Prev: The Multinomial Distribution,  Up: Random Number Distributions
+
+20.33 The Negative Binomial Distribution
+========================================
+
+ -- Function: unsigned int gsl_ran_negative_binomial (const gsl_rng *
+          R, double P, double N)
+     This function returns a random integer from the negative binomial
+     distribution, the number of failures occurring before N successes
+     in independent trials with probability P of success.  The
+     probability distribution for negative binomial variates is,
+
+          p(k) = {\Gamma(n + k) \over \Gamma(k+1) \Gamma(n) } p^n (1-p)^k
+
+     Note that n is not required to be an integer.
+
+ -- Function: double gsl_ran_negative_binomial_pdf (unsigned int K,
+          double P, double N)
+     This function computes the probability p(k) of obtaining K from a
+     negative binomial distribution with parameters P and N, using the
+     formula given above.
+
+
+ -- Function: double gsl_cdf_negative_binomial_P (unsigned int K,
+          double P, double N)
+ -- Function: double gsl_cdf_negative_binomial_Q (unsigned int K,
+          double P, double N)
+     These functions compute the cumulative distribution functions
+     P(k), Q(k) for the negative binomial distribution with parameters
+     P and N.
+
+\1f
+File: gsl-ref.info,  Node: The Pascal Distribution,  Next: The Geometric Distribution,  Prev: The Negative Binomial Distribution,  Up: Random Number Distributions
+
+20.34 The Pascal Distribution
+=============================
+
+ -- Function: unsigned int gsl_ran_pascal (const gsl_rng * R, double P,
+          unsigned int N)
+     This function returns a random integer from the Pascal
+     distribution.  The Pascal distribution is simply a negative
+     binomial distribution with an integer value of n.
+
+          p(k) = {(n + k - 1)! \over k! (n - 1)! } p^n (1-p)^k
+
+     for k >= 0
+
+ -- Function: double gsl_ran_pascal_pdf (unsigned int K, double P,
+          unsigned int N)
+     This function computes the probability p(k) of obtaining K from a
+     Pascal distribution with parameters P and N, using the formula
+     given above.
+
+
+ -- Function: double gsl_cdf_pascal_P (unsigned int K, double P,
+          unsigned int N)
+ -- Function: double gsl_cdf_pascal_Q (unsigned int K, double P,
+          unsigned int N)
+     These functions compute the cumulative distribution functions
+     P(k), Q(k) for the Pascal distribution with parameters P and N.
+
+\1f
+File: gsl-ref.info,  Node: The Geometric Distribution,  Next: The Hypergeometric Distribution,  Prev: The Pascal Distribution,  Up: Random Number Distributions
+
+20.35 The Geometric Distribution
+================================
+
+ -- Function: unsigned int gsl_ran_geometric (const gsl_rng * R, double
+          P)
+     This function returns a random integer from the geometric
+     distribution, the number of independent trials with probability P
+     until the first success.  The probability distribution for
+     geometric variates is,
+
+          p(k) =  p (1-p)^(k-1)
+
+     for k >= 1.  Note that the distribution begins with k=1 with this
+     definition.  There is another convention in which the exponent k-1
+     is replaced by k.
+
+ -- Function: double gsl_ran_geometric_pdf (unsigned int K, double P)
+     This function computes the probability p(k) of obtaining K from a
+     geometric distribution with probability parameter P, using the
+     formula given above.
+
+
+ -- Function: double gsl_cdf_geometric_P (unsigned int K, double P)
+ -- Function: double gsl_cdf_geometric_Q (unsigned int K, double P)
+     These functions compute the cumulative distribution functions
+     P(k), Q(k) for the geometric distribution with parameter P.
+
+\1f
+File: gsl-ref.info,  Node: The Hypergeometric Distribution,  Next: The Logarithmic Distribution,  Prev: The Geometric Distribution,  Up: Random Number Distributions
+
+20.36 The Hypergeometric Distribution
+=====================================
+
+ -- Function: unsigned int gsl_ran_hypergeometric (const gsl_rng * R,
+          unsigned int N1, unsigned int N2, unsigned int T)
+     This function returns a random integer from the hypergeometric
+     distribution.  The probability distribution for hypergeometric
+     random variates is,
+
+          p(k) =  C(n_1, k) C(n_2, t - k) / C(n_1 + n_2, t)
+
+     where C(a,b) = a!/(b!(a-b)!) and t <= n_1 + n_2.  The domain of k
+     is max(0,t-n_2), ..., min(t,n_1).
+
+     If a population contains n_1 elements of "type 1" and n_2 elements
+     of "type 2" then the hypergeometric distribution gives the
+     probability of obtaining k elements of "type 1" in t samples from
+     the population without replacement.
+
+ -- Function: double gsl_ran_hypergeometric_pdf (unsigned int K,
+          unsigned int N1, unsigned int N2, unsigned int T)
+     This function computes the probability p(k) of obtaining K from a
+     hypergeometric distribution with parameters N1, N2, T, using the
+     formula given above.
+
+
+ -- Function: double gsl_cdf_hypergeometric_P (unsigned int K, unsigned
+          int N1, unsigned int N2, unsigned int T)
+ -- Function: double gsl_cdf_hypergeometric_Q (unsigned int K, unsigned
+          int N1, unsigned int N2, unsigned int T)
+     These functions compute the cumulative distribution functions
+     P(k), Q(k) for the hypergeometric distribution with parameters N1,
+     N2 and T.
+
+\1f
+File: gsl-ref.info,  Node: The Logarithmic Distribution,  Next: Shuffling and Sampling,  Prev: The Hypergeometric Distribution,  Up: Random Number Distributions
+
+20.37 The Logarithmic Distribution
+==================================
+
+ -- Function: unsigned int gsl_ran_logarithmic (const gsl_rng * R,
+          double P)
+     This function returns a random integer from the logarithmic
+     distribution.  The probability distribution for logarithmic random
+     variates is,
+
+          p(k) = {-1 \over \log(1-p)} {(p^k \over k)}
+
+     for k >= 1.
+
+ -- Function: double gsl_ran_logarithmic_pdf (unsigned int K, double P)
+     This function computes the probability p(k) of obtaining K from a
+     logarithmic distribution with probability parameter P, using the
+     formula given above.
+
+
+\1f
+File: gsl-ref.info,  Node: Shuffling and Sampling,  Next: Random Number Distribution Examples,  Prev: The Logarithmic Distribution,  Up: Random Number Distributions
+
+20.38 Shuffling and Sampling
+============================
+
+The following functions allow the shuffling and sampling of a set of
+objects.  The algorithms rely on a random number generator as a source
+of randomness and a poor quality generator can lead to correlations in
+the output.  In particular it is important to avoid generators with a
+short period.  For more information see Knuth, v2, 3rd ed, Section
+3.4.2, "Random Sampling and Shuffling".
+
+ -- Function: void gsl_ran_shuffle (const gsl_rng * R, void * BASE,
+          size_t N, size_t SIZE)
+     This function randomly shuffles the order of N objects, each of
+     size SIZE, stored in the array BASE[0..N-1].  The output of the
+     random number generator R is used to produce the permutation.  The
+     algorithm generates all possible n!  permutations with equal
+     probability, assuming a perfect source of random numbers.
+
+     The following code shows how to shuffle the numbers from 0 to 51,
+
+          int a[52];
+
+          for (i = 0; i < 52; i++)
+            {
+              a[i] = i;
+            }
+
+          gsl_ran_shuffle (r, a, 52, sizeof (int));
+
+
+ -- Function: int gsl_ran_choose (const gsl_rng * R, void * DEST,
+          size_t K, void * SRC, size_t N, size_t SIZE)
+     This function fills the array DEST[k] with K objects taken
+     randomly from the N elements of the array SRC[0..N-1].  The
+     objects are each of size SIZE.  The output of the random number
+     generator R is used to make the selection.  The algorithm ensures
+     all possible samples are equally likely, assuming a perfect source
+     of randomness.
+
+     The objects are sampled _without_ replacement, thus each object can
+     only appear once in DEST[k].  It is required that K be less than
+     or equal to `n'.  The objects in DEST will be in the same relative
+     order as those in SRC.  You will need to call `gsl_ran_shuffle(r,
+     dest, n, size)' if you want to randomize the order.
+
+     The following code shows how to select a random sample of three
+     unique numbers from the set 0 to 99,
+
+          double a[3], b[100];
+
+          for (i = 0; i < 100; i++)
+            {
+              b[i] = (double) i;
+            }
+
+          gsl_ran_choose (r, a, 3, b, 100, sizeof (double));
+
+
+ -- Function: void gsl_ran_sample (const gsl_rng * R, void * DEST,
+          size_t K, void * SRC, size_t N, size_t SIZE)
+     This function is like `gsl_ran_choose' but samples K items from
+     the original array of N items SRC with replacement, so the same
+     object can appear more than once in the output sequence DEST.
+     There is no requirement that K be less than N in this case.
+
+\1f
+File: gsl-ref.info,  Node: Random Number Distribution Examples,  Next: Random Number Distribution References and Further Reading,  Prev: Shuffling and Sampling,  Up: Random Number Distributions
+
+20.39 Examples
+==============
+
+The following program demonstrates the use of a random number generator
+to produce variates from a distribution.  It prints 10 samples from the
+Poisson distribution with a mean of 3.
+
+     #include <stdio.h>
+     #include <gsl/gsl_rng.h>
+     #include <gsl/gsl_randist.h>
+
+     int
+     main (void)
+     {
+       const gsl_rng_type * T;
+       gsl_rng * r;
+
+       int i, n = 10;
+       double mu = 3.0;
+
+       /* create a generator chosen by the
+          environment variable GSL_RNG_TYPE */
+
+       gsl_rng_env_setup();
+
+       T = gsl_rng_default;
+       r = gsl_rng_alloc (T);
+
+       /* print n random variates chosen from
+          the poisson distribution with mean
+          parameter mu */
+
+       for (i = 0; i < n; i++)
+         {
+           unsigned int k = gsl_ran_poisson (r, mu);
+           printf (" %u", k);
+         }
+
+       printf ("\n");
+       gsl_rng_free (r);
+       return 0;
+     }
+
+If the library and header files are installed under `/usr/local' (the
+default location) then the program can be compiled with these options,
+
+     $ gcc -Wall demo.c -lgsl -lgslcblas -lm
+
+Here is the output of the program,
+
+     $ ./a.out
+      2 5 5 2 1 0 3 4 1 1
+
+The variates depend on the seed used by the generator.  The seed for the
+default generator type `gsl_rng_default' can be changed with the
+`GSL_RNG_SEED' environment variable to produce a different stream of
+variates,
+
+     $ GSL_RNG_SEED=123 ./a.out
+     GSL_RNG_SEED=123
+      4 5 6 3 3 1 4 2 5 5
+
+The following program generates a random walk in two dimensions.
+
+     #include <stdio.h>
+     #include <gsl/gsl_rng.h>
+     #include <gsl/gsl_randist.h>
+
+     int
+     main (void)
+     {
+       int i;
+       double x = 0, y = 0, dx, dy;
+
+       const gsl_rng_type * T;
+       gsl_rng * r;
+
+       gsl_rng_env_setup();
+       T = gsl_rng_default;
+       r = gsl_rng_alloc (T);
+
+       printf ("%g %g\n", x, y);
+
+       for (i = 0; i < 10; i++)
+         {
+           gsl_ran_dir_2d (r, &dx, &dy);
+           x += dx; y += dy;
+           printf ("%g %g\n", x, y);
+         }
+
+       gsl_rng_free (r);
+       return 0;
+     }
+
+Here is some output from the program, four 10-step random walks from
+the origin,
+
+   The following program computes the upper and lower cumulative
+distribution functions for the standard normal distribution at x=2.
+
+     #include <stdio.h>
+     #include <gsl/gsl_cdf.h>
+
+     int
+     main (void)
+     {
+       double P, Q;
+       double x = 2.0;
+
+       P = gsl_cdf_ugaussian_P (x);
+       printf ("prob(x < %f) = %f\n", x, P);
+
+       Q = gsl_cdf_ugaussian_Q (x);
+       printf ("prob(x > %f) = %f\n", x, Q);
+
+       x = gsl_cdf_ugaussian_Pinv (P);
+       printf ("Pinv(%f) = %f\n", P, x);
+
+       x = gsl_cdf_ugaussian_Qinv (Q);
+       printf ("Qinv(%f) = %f\n", Q, x);
+
+       return 0;
+     }
+
+Here is the output of the program,
+
+     prob(x < 2.000000) = 0.977250
+     prob(x > 2.000000) = 0.022750
+     Pinv(0.977250) = 2.000000
+     Qinv(0.022750) = 2.000000
+
+\1f
+File: gsl-ref.info,  Node: Random Number Distribution References and Further Reading,  Prev: Random Number Distribution Examples,  Up: Random Number Distributions
+
+20.40 References and Further Reading
+====================================
+
+For an encyclopaedic coverage of the subject readers are advised to
+consult the book `Non-Uniform Random Variate Generation' by Luc
+Devroye.  It covers every imaginable distribution and provides hundreds
+of algorithms.
+
+     Luc Devroye, `Non-Uniform Random Variate Generation',
+     Springer-Verlag, ISBN 0-387-96305-7.  Available online at
+     `http://cg.scs.carleton.ca/~luc/rnbookindex.html'.
+
+The subject of random variate generation is also reviewed by Knuth, who
+describes algorithms for all the major distributions.
+
+     Donald E. Knuth, `The Art of Computer Programming: Seminumerical
+     Algorithms' (Vol 2, 3rd Ed, 1997), Addison-Wesley, ISBN 0201896842.
+
+The Particle Data Group provides a short review of techniques for
+generating distributions of random numbers in the "Monte Carlo" section
+of its Annual Review of Particle Physics.
+
+     `Review of Particle Properties' R.M. Barnett et al., Physical
+     Review D54, 1 (1996) `http://pdg.lbl.gov/'.
+
+The Review of Particle Physics is available online in postscript and pdf
+format.
+
+An overview of methods used to compute cumulative distribution functions
+can be found in `Statistical Computing' by W.J. Kennedy and J.E.
+Gentle. Another general reference is `Elements of Statistical
+Computing' by R.A. Thisted.
+
+     William E. Kennedy and James E. Gentle, `Statistical Computing'
+     (1980), Marcel Dekker, ISBN 0-8247-6898-1.
+
+     Ronald A. Thisted, `Elements of Statistical Computing' (1988),
+     Chapman & Hall, ISBN 0-412-01371-1.
+
+The cumulative distribution functions for the Gaussian distribution are
+based on the following papers,
+
+     `Rational Chebyshev Approximations Using Linear Equations', W.J.
+     Cody, W. Fraser, J.F. Hart. Numerische Mathematik 12, 242-251
+     (1968).
+
+     `Rational Chebyshev Approximations for the Error Function', W.J.
+     Cody. Mathematics of Computation 23, n107, 631-637 (July 1969).
+
+\1f
+File: gsl-ref.info,  Node: Statistics,  Next: Histograms,  Prev: Random Number Distributions,  Up: Top
+
+21 Statistics
+*************
+
+This chapter describes the statistical functions in the library.  The
+basic statistical functions include routines to compute the mean,
+variance and standard deviation.  More advanced functions allow you to
+calculate absolute deviations, skewness, and kurtosis as well as the
+median and arbitrary percentiles.  The algorithms use recurrence
+relations to compute average quantities in a stable way, without large
+intermediate values that might overflow.
+
+   The functions are available in versions for datasets in the standard
+floating-point and integer types.  The versions for double precision
+floating-point data have the prefix `gsl_stats' and are declared in the
+header file `gsl_statistics_double.h'.  The versions for integer data
+have the prefix `gsl_stats_int' and are declared in the header file
+`gsl_statistics_int.h'.   All the functions operate on C arrays with a
+STRIDE parameter specifying the spacing between elements.
+
+* Menu:
+
+* Mean and standard deviation and variance::
+* Absolute deviation::
+* Higher moments (skewness and kurtosis)::
+* Autocorrelation::
+* Covariance::
+* Correlation::
+* Weighted Samples::
+* Maximum and Minimum values::
+* Median and Percentiles::
+* Example statistical programs::
+* Statistics References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Mean and standard deviation and variance,  Next: Absolute deviation,  Up: Statistics
+
+21.1 Mean, Standard Deviation and Variance
+==========================================
+
+ -- Function: double gsl_stats_mean (const double DATA[], size_t
+          STRIDE, size_t N)
+     This function returns the arithmetic mean of DATA, a dataset of
+     length N with stride STRIDE.  The arithmetic mean, or "sample
+     mean", is denoted by \Hat\mu and defined as,
+
+          \Hat\mu = (1/N) \sum x_i
+
+     where x_i are the elements of the dataset DATA.  For samples drawn
+     from a gaussian distribution the variance of \Hat\mu is \sigma^2 /
+     N.
+
+ -- Function: double gsl_stats_variance (const double DATA[], size_t
+          STRIDE, size_t N)
+     This function returns the estimated, or "sample", variance of
+     DATA, a dataset of length N with stride STRIDE.  The estimated
+     variance is denoted by \Hat\sigma^2 and is defined by,
+
+          \Hat\sigma^2 = (1/(N-1)) \sum (x_i - \Hat\mu)^2
+
+     where x_i are the elements of the dataset DATA.  Note that the
+     normalization factor of 1/(N-1) results from the derivation of
+     \Hat\sigma^2 as an unbiased estimator of the population variance
+     \sigma^2.  For samples drawn from a Gaussian distribution the
+     variance of \Hat\sigma^2 itself is 2 \sigma^4 / N.
+
+     This function computes the mean via a call to `gsl_stats_mean'.  If
+     you have already computed the mean then you can pass it directly to
+     `gsl_stats_variance_m'.
+
+ -- Function: double gsl_stats_variance_m (const double DATA[], size_t
+          STRIDE, size_t N, double MEAN)
+     This function returns the sample variance of DATA relative to the
+     given value of MEAN.  The function is computed with \Hat\mu
+     replaced by the value of MEAN that you supply,
+
+          \Hat\sigma^2 = (1/(N-1)) \sum (x_i - mean)^2
+
+ -- Function: double gsl_stats_sd (const double DATA[], size_t STRIDE,
+          size_t N)
+ -- Function: double gsl_stats_sd_m (const double DATA[], size_t
+          STRIDE, size_t N, double MEAN)
+     The standard deviation is defined as the square root of the
+     variance.  These functions return the square root of the
+     corresponding variance functions above.
+
+ -- Function: double gsl_stats_tss (const double DATA[], size_t STRIDE,
+          size_t N)
+ -- Function: double gsl_stats_tss_m (const double DATA[], size_t
+          STRIDE, size_t N, double MEAN)
+     These functions return the total sum of squares (TSS) of DATA about
+     the mean.  For `gsl_stats_tss_m' the user-supplied value of MEAN
+     is used, and for `gsl_stats_tss' it is computed using
+     `gsl_stats_mean'.
+
+          TSS =  \sum (x_i - mean)^2
+
+ -- Function: double gsl_stats_variance_with_fixed_mean (const double
+          DATA[], size_t STRIDE, size_t N, double MEAN)
+     This function computes an unbiased estimate of the variance of
+     DATA when the population mean MEAN of the underlying distribution
+     is known _a priori_.  In this case the estimator for the variance
+     uses the factor 1/N and the sample mean \Hat\mu is replaced by the
+     known population mean \mu,
+
+          \Hat\sigma^2 = (1/N) \sum (x_i - \mu)^2
+
+ -- Function: double gsl_stats_sd_with_fixed_mean (const double DATA[],
+          size_t STRIDE, size_t N, double MEAN)
+     This function calculates the standard deviation of DATA for a
+     fixed population mean MEAN.  The result is the square root of the
+     corresponding variance function.
+
+\1f
+File: gsl-ref.info,  Node: Absolute deviation,  Next: Higher moments (skewness and kurtosis),  Prev: Mean and standard deviation and variance,  Up: Statistics
+
+21.2 Absolute deviation
+=======================
+
+ -- Function: double gsl_stats_absdev (const double DATA[], size_t
+          STRIDE, size_t N)
+     This function computes the absolute deviation from the mean of
+     DATA, a dataset of length N with stride STRIDE.  The absolute
+     deviation from the mean is defined as,
+
+          absdev  = (1/N) \sum |x_i - \Hat\mu|
+
+     where x_i are the elements of the dataset DATA.  The absolute
+     deviation from the mean provides a more robust measure of the
+     width of a distribution than the variance.  This function computes
+     the mean of DATA via a call to `gsl_stats_mean'.
+
+ -- Function: double gsl_stats_absdev_m (const double DATA[], size_t
+          STRIDE, size_t N, double MEAN)
+     This function computes the absolute deviation of the dataset DATA
+     relative to the given value of MEAN,
+
+          absdev  = (1/N) \sum |x_i - mean|
+
+     This function is useful if you have already computed the mean of
+     DATA (and want to avoid recomputing it), or wish to calculate the
+     absolute deviation relative to another value (such as zero, or the
+     median).
+
+\1f
+File: gsl-ref.info,  Node: Higher moments (skewness and kurtosis),  Next: Autocorrelation,  Prev: Absolute deviation,  Up: Statistics
+
+21.3 Higher moments (skewness and kurtosis)
+===========================================
+
+ -- Function: double gsl_stats_skew (const double DATA[], size_t
+          STRIDE, size_t N)
+     This function computes the skewness of DATA, a dataset of length N
+     with stride STRIDE.  The skewness is defined as,
+
+          skew = (1/N) \sum ((x_i - \Hat\mu)/\Hat\sigma)^3
+
+     where x_i are the elements of the dataset DATA.  The skewness
+     measures the asymmetry of the tails of a distribution.
+
+     The function computes the mean and estimated standard deviation of
+     DATA via calls to `gsl_stats_mean' and `gsl_stats_sd'.
+
+ -- Function: double gsl_stats_skew_m_sd (const double DATA[], size_t
+          STRIDE, size_t N, double MEAN, double SD)
+     This function computes the skewness of the dataset DATA using the
+     given values of the mean MEAN and standard deviation SD,
+
+          skew = (1/N) \sum ((x_i - mean)/sd)^3
+
+     These functions are useful if you have already computed the mean
+     and standard deviation of DATA and want to avoid recomputing them.
+
+ -- Function: double gsl_stats_kurtosis (const double DATA[], size_t
+          STRIDE, size_t N)
+     This function computes the kurtosis of DATA, a dataset of length N
+     with stride STRIDE.  The kurtosis is defined as,
+
+          kurtosis = ((1/N) \sum ((x_i - \Hat\mu)/\Hat\sigma)^4)  - 3
+
+     The kurtosis measures how sharply peaked a distribution is,
+     relative to its width.  The kurtosis is normalized to zero for a
+     Gaussian distribution.
+
+ -- Function: double gsl_stats_kurtosis_m_sd (const double DATA[],
+          size_t STRIDE, size_t N, double MEAN, double SD)
+     This function computes the kurtosis of the dataset DATA using the
+     given values of the mean MEAN and standard deviation SD,
+
+          kurtosis = ((1/N) \sum ((x_i - mean)/sd)^4) - 3
+
+     This function is useful if you have already computed the mean and
+     standard deviation of DATA and want to avoid recomputing them.
+
+\1f
+File: gsl-ref.info,  Node: Autocorrelation,  Next: Covariance,  Prev: Higher moments (skewness and kurtosis),  Up: Statistics
+
+21.4 Autocorrelation
+====================
+
+ -- Function: double gsl_stats_lag1_autocorrelation (const double
+          DATA[], const size_t STRIDE, const size_t N)
+     This function computes the lag-1 autocorrelation of the dataset
+     DATA.
+
+          a_1 = {\sum_{i = 1}^{n} (x_{i} - \Hat\mu) (x_{i-1} - \Hat\mu)
+                 \over
+                 \sum_{i = 1}^{n} (x_{i} - \Hat\mu) (x_{i} - \Hat\mu)}
+
+ -- Function: double gsl_stats_lag1_autocorrelation_m (const double
+          DATA[], const size_t STRIDE, const size_t N, const double
+          MEAN)
+     This function computes the lag-1 autocorrelation of the dataset
+     DATA using the given value of the mean MEAN.
+
+
+\1f
+File: gsl-ref.info,  Node: Covariance,  Next: Correlation,  Prev: Autocorrelation,  Up: Statistics
+
+21.5 Covariance
+===============
+
+ -- Function: double gsl_stats_covariance (const double DATA1[], const
+          size_t STRIDE1, const double DATA2[], const size_t STRIDE2,
+          const size_t N)
+     This function computes the covariance of the datasets DATA1 and
+     DATA2 which must both be of the same length N.
+
+          covar = (1/(n - 1)) \sum_{i = 1}^{n} (x_i - \Hat x) (y_i - \Hat y)
+
+ -- Function: double gsl_stats_covariance_m (const double DATA1[],
+          const size_t STRIDE1, const double DATA2[], const size_t
+          STRIDE2, const size_t N, const double MEAN1, const double
+          MEAN2)
+     This function computes the covariance of the datasets DATA1 and
+     DATA2 using the given values of the means, MEAN1 and MEAN2.  This
+     is useful if you have already computed the means of DATA1 and
+     DATA2 and want to avoid recomputing them.
+
+\1f
+File: gsl-ref.info,  Node: Correlation,  Next: Weighted Samples,  Prev: Covariance,  Up: Statistics
+
+21.6 Correlation
+================
+
+ -- Function: double gsl_stats_correlation (const double DATA1[], const
+          size_t STRIDE1, const double DATA2[], const size_t STRIDE2,
+          const size_t N)
+     This function efficiently computes the Pearson correlation
+     coefficient between the datasets DATA1 and DATA2 which must both
+     be of the same length N.
+          r = cov(x, y) / (\Hat\sigma_x \Hat\sigma_y)
+            = {1/(n-1) \sum (x_i - \Hat x) (y_i - \Hat y)
+               \over
+               \sqrt{1/(n-1) \sum (x_i - \Hat x)^2} \sqrt{1/(n-1) \sum (y_i - \Hat y)^2}
+              }
+
+\1f
+File: gsl-ref.info,  Node: Weighted Samples,  Next: Maximum and Minimum values,  Prev: Correlation,  Up: Statistics
+
+21.7 Weighted Samples
+=====================
+
+The functions described in this section allow the computation of
+statistics for weighted samples.  The functions accept an array of
+samples, x_i, with associated weights, w_i.  Each sample x_i is
+considered as having been drawn from a Gaussian distribution with
+variance \sigma_i^2.  The sample weight w_i is defined as the
+reciprocal of this variance, w_i = 1/\sigma_i^2.  Setting a weight to
+zero corresponds to removing a sample from a dataset.
+
+ -- Function: double gsl_stats_wmean (const double W[], size_t WSTRIDE,
+          const double DATA[], size_t STRIDE, size_t N)
+     This function returns the weighted mean of the dataset DATA with
+     stride STRIDE and length N, using the set of weights W with stride
+     WSTRIDE and length N.  The weighted mean is defined as,
+
+          \Hat\mu = (\sum w_i x_i) / (\sum w_i)
+
+ -- Function: double gsl_stats_wvariance (const double W[], size_t
+          WSTRIDE, const double DATA[], size_t STRIDE, size_t N)
+     This function returns the estimated variance of the dataset DATA
+     with stride STRIDE and length N, using the set of weights W with
+     stride WSTRIDE and length N.  The estimated variance of a weighted
+     dataset is calculated as,
+
+          \Hat\sigma^2 = ((\sum w_i)/((\sum w_i)^2 - \sum (w_i^2)))
+                          \sum w_i (x_i - \Hat\mu)^2
+
+     Note that this expression reduces to an unweighted variance with
+     the familiar 1/(N-1) factor when there are N equal non-zero
+     weights.
+
+ -- Function: double gsl_stats_wvariance_m (const double W[], size_t
+          WSTRIDE, const double DATA[], size_t STRIDE, size_t N, double
+          WMEAN)
+     This function returns the estimated variance of the weighted
+     dataset DATA using the given weighted mean WMEAN.
+
+ -- Function: double gsl_stats_wsd (const double W[], size_t WSTRIDE,
+          const double DATA[], size_t STRIDE, size_t N)
+     The standard deviation is defined as the square root of the
+     variance.  This function returns the square root of the
+     corresponding variance function `gsl_stats_wvariance' above.
+
+ -- Function: double gsl_stats_wsd_m (const double W[], size_t WSTRIDE,
+          const double DATA[], size_t STRIDE, size_t N, double WMEAN)
+     This function returns the square root of the corresponding variance
+     function `gsl_stats_wvariance_m' above.
+
+ -- Function: double gsl_stats_wvariance_with_fixed_mean (const double
+          W[], size_t WSTRIDE, const double DATA[], size_t STRIDE,
+          size_t N, const double MEAN)
+     This function computes an unbiased estimate of the variance of the
+     weighted dataset DATA when the population mean MEAN of the
+     underlying distribution is known _a priori_.  In this case the
+     estimator for the variance replaces the sample mean \Hat\mu by the
+     known population mean \mu,
+
+          \Hat\sigma^2 = (\sum w_i (x_i - \mu)^2) / (\sum w_i)
+
+ -- Function: double gsl_stats_wsd_with_fixed_mean (const double W[],
+          size_t WSTRIDE, const double DATA[], size_t STRIDE, size_t N,
+          const double MEAN)
+     The standard deviation is defined as the square root of the
+     variance.  This function returns the square root of the
+     corresponding variance function above.
+
+ -- Function: double gsl_stats_wtss (const double W[], const size_t
+          WSTRIDE, const double DATA[], size_t STRIDE, size_t N)
+ -- Function: double gsl_stats_wtss_m (const double W[], const size_t
+          WSTRIDE, const double DATA[], size_t STRIDE, size_t N, double
+          WMEAN)
+     These functions return the weighted total sum of squares (TSS) of
+     DATA about the weighted mean.  For `gsl_stats_wtss_m' the
+     user-supplied value of WMEAN is used, and for `gsl_stats_wtss' it
+     is computed using `gsl_stats_wmean'.
+
+          TSS =  \sum w_i (x_i - wmean)^2
+
+ -- Function: double gsl_stats_wabsdev (const double W[], size_t
+          WSTRIDE, const double DATA[], size_t STRIDE, size_t N)
+     This function computes the weighted absolute deviation from the
+     weighted mean of DATA.  The absolute deviation from the mean is
+     defined as,
+
+          absdev = (\sum w_i |x_i - \Hat\mu|) / (\sum w_i)
+
+ -- Function: double gsl_stats_wabsdev_m (const double W[], size_t
+          WSTRIDE, const double DATA[], size_t STRIDE, size_t N, double
+          WMEAN)
+     This function computes the absolute deviation of the weighted
+     dataset DATA about the given weighted mean WMEAN.
+
+ -- Function: double gsl_stats_wskew (const double W[], size_t WSTRIDE,
+          const double DATA[], size_t STRIDE, size_t N)
+     This function computes the weighted skewness of the dataset DATA.
+
+          skew = (\sum w_i ((x_i - \Hat x)/\Hat \sigma)^3) / (\sum w_i)
+
+ -- Function: double gsl_stats_wskew_m_sd (const double W[], size_t
+          WSTRIDE, const double DATA[], size_t STRIDE, size_t N, double
+          WMEAN, double WSD)
+     This function computes the weighted skewness of the dataset DATA
+     using the given values of the weighted mean and weighted standard
+     deviation, WMEAN and WSD.
+
+ -- Function: double gsl_stats_wkurtosis (const double W[], size_t
+          WSTRIDE, const double DATA[], size_t STRIDE, size_t N)
+     This function computes the weighted kurtosis of the dataset DATA.
+
+          kurtosis = ((\sum w_i ((x_i - \Hat x)/\Hat \sigma)^4) / (\sum w_i)) - 3
+
+ -- Function: double gsl_stats_wkurtosis_m_sd (const double W[], size_t
+          WSTRIDE, const double DATA[], size_t STRIDE, size_t N, double
+          WMEAN, double WSD)
+     This function computes the weighted kurtosis of the dataset DATA
+     using the given values of the weighted mean and weighted standard
+     deviation, WMEAN and WSD.
+
+\1f
+File: gsl-ref.info,  Node: Maximum and Minimum values,  Next: Median and Percentiles,  Prev: Weighted Samples,  Up: Statistics
+
+21.8 Maximum and Minimum values
+===============================
+
+The following functions find the maximum and minimum values of a
+dataset (or their indices).  If the data contains `NaN's then a `NaN'
+will be returned, since the maximum or minimum value is undefined.  For
+functions which return an index, the location of the first `NaN' in the
+array is returned.
+
+ -- Function: double gsl_stats_max (const double DATA[], size_t STRIDE,
+          size_t N)
+     This function returns the maximum value in DATA, a dataset of
+     length N with stride STRIDE.  The maximum value is defined as the
+     value of the element x_i which satisfies x_i >= x_j for all j.
+
+     If you want instead to find the element with the largest absolute
+     magnitude you will need to apply `fabs' or `abs' to your data
+     before calling this function.
+
+ -- Function: double gsl_stats_min (const double DATA[], size_t STRIDE,
+          size_t N)
+     This function returns the minimum value in DATA, a dataset of
+     length N with stride STRIDE.  The minimum value is defined as the
+     value of the element x_i which satisfies x_i <= x_j for all j.
+
+     If you want instead to find the element with the smallest absolute
+     magnitude you will need to apply `fabs' or `abs' to your data
+     before calling this function.
+
+ -- Function: void gsl_stats_minmax (double * MIN, double * MAX, const
+          double DATA[], size_t STRIDE, size_t N)
+     This function finds both the minimum and maximum values MIN, MAX
+     in DATA in a single pass.
+
+ -- Function: size_t gsl_stats_max_index (const double DATA[], size_t
+          STRIDE, size_t N)
+     This function returns the index of the maximum value in DATA, a
+     dataset of length N with stride STRIDE.  The maximum value is
+     defined as the value of the element x_i which satisfies x_i >= x_j
+     for all j.  When there are several equal maximum elements then the
+     first one is chosen.
+
+ -- Function: size_t gsl_stats_min_index (const double DATA[], size_t
+          STRIDE, size_t N)
+     This function returns the index of the minimum value in DATA, a
+     dataset of length N with stride STRIDE.  The minimum value is
+     defined as the value of the element x_i which satisfies x_i >= x_j
+     for all j.  When there are several equal minimum elements then the
+     first one is chosen.
+
+ -- Function: void gsl_stats_minmax_index (size_t * MIN_INDEX, size_t *
+          MAX_INDEX, const double DATA[], size_t STRIDE, size_t N)
+     This function returns the indexes MIN_INDEX, MAX_INDEX of the
+     minimum and maximum values in DATA in a single pass.
+
+\1f
+File: gsl-ref.info,  Node: Median and Percentiles,  Next: Example statistical programs,  Prev: Maximum and Minimum values,  Up: Statistics
+
+21.9 Median and Percentiles
+===========================
+
+The median and percentile functions described in this section operate on
+sorted data.  For convenience we use "quantiles", measured on a scale
+of 0 to 1, instead of percentiles (which use a scale of 0 to 100).
+
+ -- Function: double gsl_stats_median_from_sorted_data (const double
+          SORTED_DATA[], size_t STRIDE, size_t N)
+     This function returns the median value of SORTED_DATA, a dataset
+     of length N with stride STRIDE.  The elements of the array must be
+     in ascending numerical order.  There are no checks to see whether
+     the data are sorted, so the function `gsl_sort' should always be
+     used first.
+
+     When the dataset has an odd number of elements the median is the
+     value of element (n-1)/2.  When the dataset has an even number of
+     elements the median is the mean of the two nearest middle values,
+     elements (n-1)/2 and n/2.  Since the algorithm for computing the
+     median involves interpolation this function always returns a
+     floating-point number, even for integer data types.
+
+ -- Function: double gsl_stats_quantile_from_sorted_data (const double
+          SORTED_DATA[], size_t STRIDE, size_t N, double F)
+     This function returns a quantile value of SORTED_DATA, a
+     double-precision array of length N with stride STRIDE.  The
+     elements of the array must be in ascending numerical order.  The
+     quantile is determined by the F, a fraction between 0 and 1.  For
+     example, to compute the value of the 75th percentile F should have
+     the value 0.75.
+
+     There are no checks to see whether the data are sorted, so the
+     function `gsl_sort' should always be used first.
+
+     The quantile is found by interpolation, using the formula
+
+          quantile = (1 - \delta) x_i + \delta x_{i+1}
+
+     where i is `floor'((n - 1)f) and \delta is (n-1)f - i.
+
+     Thus the minimum value of the array (`data[0*stride]') is given by
+     F equal to zero, the maximum value (`data[(n-1)*stride]') is given
+     by F equal to one and the median value is given by F equal to 0.5.
+     Since the algorithm for computing quantiles involves interpolation
+     this function always returns a floating-point number, even for
+     integer data types.
+
+\1f
+File: gsl-ref.info,  Node: Example statistical programs,  Next: Statistics References and Further Reading,  Prev: Median and Percentiles,  Up: Statistics
+
+21.10 Examples
+==============
+
+Here is a basic example of how to use the statistical functions:
+
+     #include <stdio.h>
+     #include <gsl/gsl_statistics.h>
+
+     int
+     main(void)
+     {
+       double data[5] = {17.2, 18.1, 16.5, 18.3, 12.6};
+       double mean, variance, largest, smallest;
+
+       mean     = gsl_stats_mean(data, 1, 5);
+       variance = gsl_stats_variance(data, 1, 5);
+       largest  = gsl_stats_max(data, 1, 5);
+       smallest = gsl_stats_min(data, 1, 5);
+
+       printf ("The dataset is %g, %g, %g, %g, %g\n",
+              data[0], data[1], data[2], data[3], data[4]);
+
+       printf ("The sample mean is %g\n", mean);
+       printf ("The estimated variance is %g\n", variance);
+       printf ("The largest value is %g\n", largest);
+       printf ("The smallest value is %g\n", smallest);
+       return 0;
+     }
+
+   The program should produce the following output,
+
+     The dataset is 17.2, 18.1, 16.5, 18.3, 12.6
+     The sample mean is 16.54
+     The estimated variance is 5.373
+     The largest value is 18.3
+     The smallest value is 12.6
+
+   Here is an example using sorted data,
+
+     #include <stdio.h>
+     #include <gsl/gsl_sort.h>
+     #include <gsl/gsl_statistics.h>
+
+     int
+     main(void)
+     {
+       double data[5] = {17.2, 18.1, 16.5, 18.3, 12.6};
+       double median, upperq, lowerq;
+
+       printf ("Original dataset:  %g, %g, %g, %g, %g\n",
+              data[0], data[1], data[2], data[3], data[4]);
+
+       gsl_sort (data, 1, 5);
+
+       printf ("Sorted dataset: %g, %g, %g, %g, %g\n",
+              data[0], data[1], data[2], data[3], data[4]);
+
+       median
+         = gsl_stats_median_from_sorted_data (data,
+                                              1, 5);
+
+       upperq
+         = gsl_stats_quantile_from_sorted_data (data,
+                                                1, 5,
+                                                0.75);
+       lowerq
+         = gsl_stats_quantile_from_sorted_data (data,
+                                                1, 5,
+                                                0.25);
+
+       printf ("The median is %g\n", median);
+       printf ("The upper quartile is %g\n", upperq);
+       printf ("The lower quartile is %g\n", lowerq);
+       return 0;
+     }
+
+   This program should produce the following output,
+
+     Original dataset: 17.2, 18.1, 16.5, 18.3, 12.6
+     Sorted dataset: 12.6, 16.5, 17.2, 18.1, 18.3
+     The median is 17.2
+     The upper quartile is 18.1
+     The lower quartile is 16.5
+
+\1f
+File: gsl-ref.info,  Node: Statistics References and Further Reading,  Prev: Example statistical programs,  Up: Statistics
+
+21.11 References and Further Reading
+====================================
+
+The standard reference for almost any topic in statistics is the
+multi-volume `Advanced Theory of Statistics' by Kendall and Stuart.
+
+     Maurice Kendall, Alan Stuart, and J. Keith Ord.  `The Advanced
+     Theory of Statistics' (multiple volumes) reprinted as `Kendall's
+     Advanced Theory of Statistics'.  Wiley, ISBN 047023380X.
+
+Many statistical concepts can be more easily understood by a Bayesian
+approach.  The following book by Gelman, Carlin, Stern and Rubin gives a
+comprehensive coverage of the subject.
+
+     Andrew Gelman, John B. Carlin, Hal S. Stern, Donald B. Rubin.
+     `Bayesian Data Analysis'.  Chapman & Hall, ISBN 0412039915.
+
+For physicists the Particle Data Group provides useful reviews of
+Probability and Statistics in the "Mathematical Tools" section of its
+Annual Review of Particle Physics.
+
+     `Review of Particle Properties' R.M. Barnett et al., Physical
+     Review D54, 1 (1996)
+
+The Review of Particle Physics is available online at the website
+`http://pdg.lbl.gov/'.
+
+\1f
+File: gsl-ref.info,  Node: Histograms,  Next: N-tuples,  Prev: Statistics,  Up: Top
+
+22 Histograms
+*************
+
+This chapter describes functions for creating histograms.  Histograms
+provide a convenient way of summarizing the distribution of a set of
+data. A histogram consists of a set of "bins" which count the number of
+events falling into a given range of a continuous variable x.  In GSL
+the bins of a histogram contain floating-point numbers, so they can be
+used to record both integer and non-integer distributions.  The bins
+can use arbitrary sets of ranges (uniformly spaced bins are the
+default).  Both one and two-dimensional histograms are supported.
+
+   Once a histogram has been created it can also be converted into a
+probability distribution function.  The library provides efficient
+routines for selecting random samples from probability distributions.
+This can be useful for generating simulations based on real data.
+
+   The functions are declared in the header files `gsl_histogram.h' and
+`gsl_histogram2d.h'.
+
+* Menu:
+
+* The histogram struct::
+* Histogram allocation::
+* Copying Histograms::
+* Updating and accessing histogram elements::
+* Searching histogram ranges::
+* Histogram Statistics::
+* Histogram Operations::
+* Reading and writing histograms::
+* Resampling from histograms::
+* The histogram probability distribution struct::
+* Example programs for histograms::
+* Two dimensional histograms::
+* The 2D histogram struct::
+* 2D Histogram allocation::
+* Copying 2D Histograms::
+* Updating and accessing 2D histogram elements::
+* Searching 2D histogram ranges::
+* 2D Histogram Statistics::
+* 2D Histogram Operations::
+* Reading and writing 2D histograms::
+* Resampling from 2D histograms::
+* Example programs for 2D histograms::
+
+\1f
+File: gsl-ref.info,  Node: The histogram struct,  Next: Histogram allocation,  Up: Histograms
+
+22.1 The histogram struct
+=========================
+
+A histogram is defined by the following struct,
+
+ -- Data Type: gsl_histogram
+    `size_t n'
+          This is the number of histogram bins
+
+    `double * range'
+          The ranges of the bins are stored in an array of N+1 elements
+          pointed to by RANGE.
+
+    `double * bin'
+          The counts for each bin are stored in an array of N elements
+          pointed to by BIN.  The bins are floating-point numbers, so
+          you can increment them by non-integer values if necessary.
+
+The range for BIN[i] is given by RANGE[i] to RANGE[i+1].  For n bins
+there are n+1 entries in the array RANGE.  Each bin is inclusive at the
+lower end and exclusive at the upper end.  Mathematically this means
+that the bins are defined by the following inequality,
+     bin[i] corresponds to range[i] <= x < range[i+1]
+
+Here is a diagram of the correspondence between ranges and bins on the
+number-line for x,
+
+
+          [ bin[0] )[ bin[1] )[ bin[2] )[ bin[3] )[ bin[4] )
+       ---|---------|---------|---------|---------|---------|---  x
+        r[0]      r[1]      r[2]      r[3]      r[4]      r[5]
+
+In this picture the values of the RANGE array are denoted by r.  On the
+left-hand side of each bin the square bracket `[' denotes an inclusive
+lower bound (r <= x), and the round parentheses `)' on the right-hand
+side denote an exclusive upper bound (x < r).  Thus any samples which
+fall on the upper end of the histogram are excluded.  If you want to
+include this value for the last bin you will need to add an extra bin
+to your histogram.
+
+   The `gsl_histogram' struct and its associated functions are defined
+in the header file `gsl_histogram.h'.
+
+\1f
+File: gsl-ref.info,  Node: Histogram allocation,  Next: Copying Histograms,  Prev: The histogram struct,  Up: Histograms
+
+22.2 Histogram allocation
+=========================
+
+The functions for allocating memory to a histogram follow the style of
+`malloc' and `free'.  In addition they also perform their own error
+checking.  If there is insufficient memory available to allocate a
+histogram then the functions call the error handler (with an error
+number of `GSL_ENOMEM') in addition to returning a null pointer.  Thus
+if you use the library error handler to abort your program then it
+isn't necessary to check every histogram `alloc'.
+
+ -- Function: gsl_histogram * gsl_histogram_alloc (size_t N)
+     This function allocates memory for a histogram with N bins, and
+     returns a pointer to a newly created `gsl_histogram' struct.  If
+     insufficient memory is available a null pointer is returned and the
+     error handler is invoked with an error code of `GSL_ENOMEM'. The
+     bins and ranges are not initialized, and should be prepared using
+     one of the range-setting functions below in order to make the
+     histogram ready for use.
+
+ -- Function: int gsl_histogram_set_ranges (gsl_histogram * H, const
+          double RANGE[], size_t SIZE)
+     This function sets the ranges of the existing histogram H using
+     the array RANGE of size SIZE.  The values of the histogram bins
+     are reset to zero.  The `range' array should contain the desired
+     bin limits.  The ranges can be arbitrary, subject to the
+     restriction that they are monotonically increasing.
+
+     The following example shows how to create a histogram with
+     logarithmic bins with ranges [1,10), [10,100) and [100,1000).
+
+          gsl_histogram * h = gsl_histogram_alloc (3);
+
+          /* bin[0] covers the range 1 <= x < 10 */
+          /* bin[1] covers the range 10 <= x < 100 */
+          /* bin[2] covers the range 100 <= x < 1000 */
+
+          double range[4] = { 1.0, 10.0, 100.0, 1000.0 };
+
+          gsl_histogram_set_ranges (h, range, 4);
+
+     Note that the size of the RANGE array should be defined to be one
+     element bigger than the number of bins.  The additional element is
+     required for the upper value of the final bin.
+
+ -- Function: int gsl_histogram_set_ranges_uniform (gsl_histogram * H,
+          double XMIN, double XMAX)
+     This function sets the ranges of the existing histogram H to cover
+     the range XMIN to XMAX uniformly.  The values of the histogram
+     bins are reset to zero.  The bin ranges are shown in the table
+     below,
+          bin[0] corresponds to xmin <= x < xmin + d
+          bin[1] corresponds to xmin + d <= x < xmin + 2 d
+          ......
+          bin[n-1] corresponds to xmin + (n-1)d <= x < xmax
+
+     where d is the bin spacing, d = (xmax-xmin)/n.
+
+ -- Function: void gsl_histogram_free (gsl_histogram * H)
+     This function frees the histogram H and all of the memory
+     associated with it.
+
+\1f
+File: gsl-ref.info,  Node: Copying Histograms,  Next: Updating and accessing histogram elements,  Prev: Histogram allocation,  Up: Histograms
+
+22.3 Copying Histograms
+=======================
+
+ -- Function: int gsl_histogram_memcpy (gsl_histogram * DEST, const
+          gsl_histogram * SRC)
+     This function copies the histogram SRC into the pre-existing
+     histogram DEST, making DEST into an exact copy of SRC.  The two
+     histograms must be of the same size.
+
+ -- Function: gsl_histogram * gsl_histogram_clone (const gsl_histogram
+          * SRC)
+     This function returns a pointer to a newly created histogram which
+     is an exact copy of the histogram SRC.
+
+\1f
+File: gsl-ref.info,  Node: Updating and accessing histogram elements,  Next: Searching histogram ranges,  Prev: Copying Histograms,  Up: Histograms
+
+22.4 Updating and accessing histogram elements
+==============================================
+
+There are two ways to access histogram bins, either by specifying an x
+coordinate or by using the bin-index directly.  The functions for
+accessing the histogram through x coordinates use a binary search to
+identify the bin which covers the appropriate range.
+
+ -- Function: int gsl_histogram_increment (gsl_histogram * H, double X)
+     This function updates the histogram H by adding one (1.0) to the
+     bin whose range contains the coordinate X.
+
+     If X lies in the valid range of the histogram then the function
+     returns zero to indicate success.  If X is less than the lower
+     limit of the histogram then the function returns `GSL_EDOM', and
+     none of bins are modified.  Similarly, if the value of X is greater
+     than or equal to the upper limit of the histogram then the function
+     returns `GSL_EDOM', and none of the bins are modified.  The error
+     handler is not called, however, since it is often necessary to
+     compute histograms for a small range of a larger dataset, ignoring
+     the values outside the range of interest.
+
+ -- Function: int gsl_histogram_accumulate (gsl_histogram * H, double
+          X, double WEIGHT)
+     This function is similar to `gsl_histogram_increment' but increases
+     the value of the appropriate bin in the histogram H by the
+     floating-point number WEIGHT.
+
+ -- Function: double gsl_histogram_get (const gsl_histogram * H, size_t
+          I)
+     This function returns the contents of the I-th bin of the histogram
+     H.  If I lies outside the valid range of indices for the histogram
+     then the error handler is called with an error code of `GSL_EDOM'
+     and the function returns 0.
+
+ -- Function: int gsl_histogram_get_range (const gsl_histogram * H,
+          size_t I, double * LOWER, double * UPPER)
+     This function finds the upper and lower range limits of the I-th
+     bin of the histogram H.  If the index I is valid then the
+     corresponding range limits are stored in LOWER and UPPER.  The
+     lower limit is inclusive (i.e. events with this coordinate are
+     included in the bin) and the upper limit is exclusive (i.e. events
+     with the coordinate of the upper limit are excluded and fall in the
+     neighboring higher bin, if it exists).  The function returns 0 to
+     indicate success.  If I lies outside the valid range of indices for
+     the histogram then the error handler is called and the function
+     returns an error code of `GSL_EDOM'.
+
+ -- Function: double gsl_histogram_max (const gsl_histogram * H)
+ -- Function: double gsl_histogram_min (const gsl_histogram * H)
+ -- Function: size_t gsl_histogram_bins (const gsl_histogram * H)
+     These functions return the maximum upper and minimum lower range
+     limits and the number of bins of the histogram H.  They provide a
+     way of determining these values without accessing the
+     `gsl_histogram' struct directly.
+
+ -- Function: void gsl_histogram_reset (gsl_histogram * H)
+     This function resets all the bins in the histogram H to zero.
+
+\1f
+File: gsl-ref.info,  Node: Searching histogram ranges,  Next: Histogram Statistics,  Prev: Updating and accessing histogram elements,  Up: Histograms
+
+22.5 Searching histogram ranges
+===============================
+
+The following functions are used by the access and update routines to
+locate the bin which corresponds to a given x coordinate.
+
+ -- Function: int gsl_histogram_find (const gsl_histogram * H, double
+          X, size_t * I)
+     This function finds and sets the index I to the bin number which
+     covers the coordinate X in the histogram H.  The bin is located
+     using a binary search. The search includes an optimization for
+     histograms with uniform range, and will return the correct bin
+     immediately in this case.  If X is found in the range of the
+     histogram then the function sets the index I and returns
+     `GSL_SUCCESS'.  If X lies outside the valid range of the histogram
+     then the function returns `GSL_EDOM' and the error handler is
+     invoked.
+
+\1f
+File: gsl-ref.info,  Node: Histogram Statistics,  Next: Histogram Operations,  Prev: Searching histogram ranges,  Up: Histograms
+
+22.6 Histogram Statistics
+=========================
+
+ -- Function: double gsl_histogram_max_val (const gsl_histogram * H)
+     This function returns the maximum value contained in the histogram
+     bins.
+
+ -- Function: size_t gsl_histogram_max_bin (const gsl_histogram * H)
+     This function returns the index of the bin containing the maximum
+     value. In the case where several bins contain the same maximum
+     value the smallest index is returned.
+
+ -- Function: double gsl_histogram_min_val (const gsl_histogram * H)
+     This function returns the minimum value contained in the histogram
+     bins.
+
+ -- Function: size_t gsl_histogram_min_bin (const gsl_histogram * H)
+     This function returns the index of the bin containing the minimum
+     value. In the case where several bins contain the same maximum
+     value the smallest index is returned.
+
+ -- Function: double gsl_histogram_mean (const gsl_histogram * H)
+     This function returns the mean of the histogrammed variable, where
+     the histogram is regarded as a probability distribution. Negative
+     bin values are ignored for the purposes of this calculation.  The
+     accuracy of the result is limited by the bin width.
+
+ -- Function: double gsl_histogram_sigma (const gsl_histogram * H)
+     This function returns the standard deviation of the histogrammed
+     variable, where the histogram is regarded as a probability
+     distribution. Negative bin values are ignored for the purposes of
+     this calculation. The accuracy of the result is limited by the bin
+     width.
+
+ -- Function: double gsl_histogram_sum (const gsl_histogram * H)
+     This function returns the sum of all bin values. Negative bin
+     values are included in the sum.
+
+\1f
+File: gsl-ref.info,  Node: Histogram Operations,  Next: Reading and writing histograms,  Prev: Histogram Statistics,  Up: Histograms
+
+22.7 Histogram Operations
+=========================
+
+ -- Function: int gsl_histogram_equal_bins_p (const gsl_histogram * H1,
+          const gsl_histogram * H2)
+     This function returns 1 if the all of the individual bin ranges of
+     the two histograms are identical, and 0 otherwise.
+
+ -- Function: int gsl_histogram_add (gsl_histogram * H1, const
+          gsl_histogram * H2)
+     This function adds the contents of the bins in histogram H2 to the
+     corresponding bins of histogram H1,  i.e. h'_1(i) = h_1(i) +
+     h_2(i).  The two histograms must have identical bin ranges.
+
+ -- Function: int gsl_histogram_sub (gsl_histogram * H1, const
+          gsl_histogram * H2)
+     This function subtracts the contents of the bins in histogram H2
+     from the corresponding bins of histogram H1, i.e. h'_1(i) = h_1(i)
+     - h_2(i).  The two histograms must have identical bin ranges.
+
+ -- Function: int gsl_histogram_mul (gsl_histogram * H1, const
+          gsl_histogram * H2)
+     This function multiplies the contents of the bins of histogram H1
+     by the contents of the corresponding bins in histogram H2, i.e.
+     h'_1(i) = h_1(i) * h_2(i).  The two histograms must have identical
+     bin ranges.
+
+ -- Function: int gsl_histogram_div (gsl_histogram * H1, const
+          gsl_histogram * H2)
+     This function divides the contents of the bins of histogram H1 by
+     the contents of the corresponding bins in histogram H2, i.e.
+     h'_1(i) = h_1(i) / h_2(i).  The two histograms must have identical
+     bin ranges.
+
+ -- Function: int gsl_histogram_scale (gsl_histogram * H, double SCALE)
+     This function multiplies the contents of the bins of histogram H
+     by the constant SCALE, i.e. h'_1(i) = h_1(i) * scale.
+
+ -- Function: int gsl_histogram_shift (gsl_histogram * H, double OFFSET)
+     This function shifts the contents of the bins of histogram H by
+     the constant OFFSET, i.e. h'_1(i) = h_1(i) + offset.
+
+\1f
+File: gsl-ref.info,  Node: Reading and writing histograms,  Next: Resampling from histograms,  Prev: Histogram Operations,  Up: Histograms
+
+22.8 Reading and writing histograms
+===================================
+
+The library provides functions for reading and writing histograms to a
+file as binary data or formatted text.
+
+ -- Function: int gsl_histogram_fwrite (FILE * STREAM, const
+          gsl_histogram * H)
+     This function writes the ranges and bins of the histogram H to the
+     stream STREAM in binary format.  The return value is 0 for success
+     and `GSL_EFAILED' if there was a problem writing to the file.
+     Since the data is written in the native binary format it may not
+     be portable between different architectures.
+
+ -- Function: int gsl_histogram_fread (FILE * STREAM, gsl_histogram * H)
+     This function reads into the histogram H from the open stream
+     STREAM in binary format.  The histogram H must be preallocated
+     with the correct size since the function uses the number of bins
+     in H to determine how many bytes to read.  The return value is 0
+     for success and `GSL_EFAILED' if there was a problem reading from
+     the file.  The data is assumed to have been written in the native
+     binary format on the same architecture.
+
+ -- Function: int gsl_histogram_fprintf (FILE * STREAM, const
+          gsl_histogram * H, const char * RANGE_FORMAT, const char *
+          BIN_FORMAT)
+     This function writes the ranges and bins of the histogram H
+     line-by-line to the stream STREAM using the format specifiers
+     RANGE_FORMAT and BIN_FORMAT.  These should be one of the `%g',
+     `%e' or `%f' formats for floating point numbers.  The function
+     returns 0 for success and `GSL_EFAILED' if there was a problem
+     writing to the file.  The histogram output is formatted in three
+     columns, and the columns are separated by spaces, like this,
+
+          range[0] range[1] bin[0]
+          range[1] range[2] bin[1]
+          range[2] range[3] bin[2]
+          ....
+          range[n-1] range[n] bin[n-1]
+
+     The values of the ranges are formatted using RANGE_FORMAT and the
+     value of the bins are formatted using BIN_FORMAT.  Each line
+     contains the lower and upper limit of the range of the bins and the
+     value of the bin itself.  Since the upper limit of one bin is the
+     lower limit of the next there is duplication of these values
+     between lines but this allows the histogram to be manipulated with
+     line-oriented tools.
+
+ -- Function: int gsl_histogram_fscanf (FILE * STREAM, gsl_histogram *
+          H)
+     This function reads formatted data from the stream STREAM into the
+     histogram H.  The data is assumed to be in the three-column format
+     used by `gsl_histogram_fprintf'.  The histogram H must be
+     preallocated with the correct length since the function uses the
+     size of H to determine how many numbers to read.  The function
+     returns 0 for success and `GSL_EFAILED' if there was a problem
+     reading from the file.
+
+\1f
+File: gsl-ref.info,  Node: Resampling from histograms,  Next: The histogram probability distribution struct,  Prev: Reading and writing histograms,  Up: Histograms
+
+22.9 Resampling from histograms
+===============================
+
+A histogram made by counting events can be regarded as a measurement of
+a probability distribution.  Allowing for statistical error, the height
+of each bin represents the probability of an event where the value of x
+falls in the range of that bin.  The probability distribution function
+has the one-dimensional form p(x)dx where,
+
+     p(x) = n_i/ (N w_i)
+
+In this equation n_i is the number of events in the bin which contains
+x, w_i is the width of the bin and N is the total number of events.
+The distribution of events within each bin is assumed to be uniform.
+
+\1f
+File: gsl-ref.info,  Node: The histogram probability distribution struct,  Next: Example programs for histograms,  Prev: Resampling from histograms,  Up: Histograms
+
+22.10 The histogram probability distribution struct
+===================================================
+
+The probability distribution function for a histogram consists of a set
+of "bins" which measure the probability of an event falling into a
+given range of a continuous variable x. A probability distribution
+function is defined by the following struct, which actually stores the
+cumulative probability distribution function.  This is the natural
+quantity for generating samples via the inverse transform method,
+because there is a one-to-one mapping between the cumulative
+probability distribution and the range [0,1].  It can be shown that by
+taking a uniform random number in this range and finding its
+corresponding coordinate in the cumulative probability distribution we
+obtain samples with the desired probability distribution.
+
+ -- Data Type: gsl_histogram_pdf
+    `size_t n'
+          This is the number of bins used to approximate the probability
+          distribution function.
+
+    `double * range'
+          The ranges of the bins are stored in an array of N+1 elements
+          pointed to by RANGE.
+
+    `double * sum'
+          The cumulative probability for the bins is stored in an array
+          of N elements pointed to by SUM.
+
+The following functions allow you to create a `gsl_histogram_pdf'
+struct which represents this probability distribution and generate
+random samples from it.
+
+ -- Function: gsl_histogram_pdf * gsl_histogram_pdf_alloc (size_t N)
+     This function allocates memory for a probability distribution with
+     N bins and returns a pointer to a newly initialized
+     `gsl_histogram_pdf' struct. If insufficient memory is available a
+     null pointer is returned and the error handler is invoked with an
+     error code of `GSL_ENOMEM'.
+
+ -- Function: int gsl_histogram_pdf_init (gsl_histogram_pdf * P, const
+          gsl_histogram * H)
+     This function initializes the probability distribution P with the
+     contents of the histogram H. If any of the bins of H are negative
+     then the error handler is invoked with an error code of `GSL_EDOM'
+     because a probability distribution cannot contain negative values.
+
+ -- Function: void gsl_histogram_pdf_free (gsl_histogram_pdf * P)
+     This function frees the probability distribution function P and
+     all of the memory associated with it.
+
+ -- Function: double gsl_histogram_pdf_sample (const gsl_histogram_pdf
+          * P, double R)
+     This function uses R, a uniform random number between zero and
+     one, to compute a single random sample from the probability
+     distribution P.  The algorithm used to compute the sample s is
+     given by the following formula,
+
+          s = range[i] + delta * (range[i+1] - range[i])
+
+     where i is the index which satisfies sum[i] <=  r < sum[i+1] and
+     delta is (r - sum[i])/(sum[i+1] - sum[i]).
+
+\1f
+File: gsl-ref.info,  Node: Example programs for histograms,  Next: Two dimensional histograms,  Prev: The histogram probability distribution struct,  Up: Histograms
+
+22.11 Example programs for histograms
+=====================================
+
+The following program shows how to make a simple histogram of a column
+of numerical data supplied on `stdin'.  The program takes three
+arguments, specifying the upper and lower bounds of the histogram and
+the number of bins.  It then reads numbers from `stdin', one line at a
+time, and adds them to the histogram.  When there is no more data to
+read it prints out the accumulated histogram using
+`gsl_histogram_fprintf'.
+
+     #include <stdio.h>
+     #include <stdlib.h>
+     #include <gsl/gsl_histogram.h>
+
+     int
+     main (int argc, char **argv)
+     {
+       double a, b;
+       size_t n;
+
+       if (argc != 4)
+         {
+           printf ("Usage: gsl-histogram xmin xmax n\n"
+                   "Computes a histogram of the data "
+                   "on stdin using n bins from xmin "
+                   "to xmax\n");
+           exit (0);
+         }
+
+       a = atof (argv[1]);
+       b = atof (argv[2]);
+       n = atoi (argv[3]);
+
+       {
+         double x;
+         gsl_histogram * h = gsl_histogram_alloc (n);
+         gsl_histogram_set_ranges_uniform (h, a, b);
+
+         while (fscanf (stdin, "%lg", &x) == 1)
+           {
+             gsl_histogram_increment (h, x);
+           }
+         gsl_histogram_fprintf (stdout, h, "%g", "%g");
+         gsl_histogram_free (h);
+       }
+       exit (0);
+     }
+
+Here is an example of the program in use.  We generate 10000 random
+samples from a Cauchy distribution with a width of 30 and histogram
+them over the range -100 to 100, using 200 bins.
+
+     $ gsl-randist 0 10000 cauchy 30
+        | gsl-histogram -100 100 200 > histogram.dat
+
+A plot of the resulting histogram shows the familiar shape of the
+Cauchy distribution and the fluctuations caused by the finite sample
+size.
+
+     $ awk '{print $1, $3 ; print $2, $3}' histogram.dat
+        | graph -T X
+
+\1f
+File: gsl-ref.info,  Node: Two dimensional histograms,  Next: The 2D histogram struct,  Prev: Example programs for histograms,  Up: Histograms
+
+22.12 Two dimensional histograms
+================================
+
+A two dimensional histogram consists of a set of "bins" which count the
+number of events falling in a given area of the (x,y) plane.  The
+simplest way to use a two dimensional histogram is to record
+two-dimensional position information, n(x,y).  Another possibility is
+to form a "joint distribution" by recording related variables.  For
+example a detector might record both the position of an event (x) and
+the amount of energy it deposited E.  These could be histogrammed as
+the joint distribution n(x,E).
+
+\1f
+File: gsl-ref.info,  Node: The 2D histogram struct,  Next: 2D Histogram allocation,  Prev: Two dimensional histograms,  Up: Histograms
+
+22.13 The 2D histogram struct
+=============================
+
+Two dimensional histograms are defined by the following struct,
+
+ -- Data Type: gsl_histogram2d
+    `size_t nx, ny'
+          This is the number of histogram bins in the x and y
+          directions.
+
+    `double * xrange'
+          The ranges of the bins in the x-direction are stored in an
+          array of NX + 1 elements pointed to by XRANGE.
+
+    `double * yrange'
+          The ranges of the bins in the y-direction are stored in an
+          array of NY + 1 elements pointed to by YRANGE.
+
+    `double * bin'
+          The counts for each bin are stored in an array pointed to by
+          BIN.  The bins are floating-point numbers, so you can
+          increment them by non-integer values if necessary.  The array
+          BIN stores the two dimensional array of bins in a single
+          block of memory according to the mapping `bin(i,j)' = `bin[i
+          * ny + j]'.
+
+The range for `bin(i,j)' is given by `xrange[i]' to `xrange[i+1]' in
+the x-direction and `yrange[j]' to `yrange[j+1]' in the y-direction.
+Each bin is inclusive at the lower end and exclusive at the upper end.
+Mathematically this means that the bins are defined by the following
+inequality,
+     bin(i,j) corresponds to xrange[i] <= x < xrange[i+1]
+                         and yrange[j] <= y < yrange[j+1]
+
+Note that any samples which fall on the upper sides of the histogram are
+excluded.  If you want to include these values for the side bins you
+will need to add an extra row or column to your histogram.
+
+   The `gsl_histogram2d' struct and its associated functions are
+defined in the header file `gsl_histogram2d.h'.
+
+\1f
+File: gsl-ref.info,  Node: 2D Histogram allocation,  Next: Copying 2D Histograms,  Prev: The 2D histogram struct,  Up: Histograms
+
+22.14 2D Histogram allocation
+=============================
+
+The functions for allocating memory to a 2D histogram follow the style
+of `malloc' and `free'.  In addition they also perform their own error
+checking.  If there is insufficient memory available to allocate a
+histogram then the functions call the error handler (with an error
+number of `GSL_ENOMEM') in addition to returning a null pointer.  Thus
+if you use the library error handler to abort your program then it
+isn't necessary to check every 2D histogram `alloc'.
+
+ -- Function: gsl_histogram2d * gsl_histogram2d_alloc (size_t NX,
+          size_t NY)
+     This function allocates memory for a two-dimensional histogram with
+     NX bins in the x direction and NY bins in the y direction.  The
+     function returns a pointer to a newly created `gsl_histogram2d'
+     struct. If insufficient memory is available a null pointer is
+     returned and the error handler is invoked with an error code of
+     `GSL_ENOMEM'. The bins and ranges must be initialized with one of
+     the functions below before the histogram is ready for use.
+
+ -- Function: int gsl_histogram2d_set_ranges (gsl_histogram2d * H,
+          const double XRANGE[], size_t XSIZE, const double YRANGE[],
+          size_t YSIZE)
+     This function sets the ranges of the existing histogram H using
+     the arrays XRANGE and YRANGE of size XSIZE and YSIZE respectively.
+     The values of the histogram bins are reset to zero.
+
+ -- Function: int gsl_histogram2d_set_ranges_uniform (gsl_histogram2d *
+          H, double XMIN, double XMAX, double YMIN, double YMAX)
+     This function sets the ranges of the existing histogram H to cover
+     the ranges XMIN to XMAX and YMIN to YMAX uniformly.  The values of
+     the histogram bins are reset to zero.
+
+ -- Function: void gsl_histogram2d_free (gsl_histogram2d * H)
+     This function frees the 2D histogram H and all of the memory
+     associated with it.
+
+\1f
+File: gsl-ref.info,  Node: Copying 2D Histograms,  Next: Updating and accessing 2D histogram elements,  Prev: 2D Histogram allocation,  Up: Histograms
+
+22.15 Copying 2D Histograms
+===========================
+
+ -- Function: int gsl_histogram2d_memcpy (gsl_histogram2d * DEST, const
+          gsl_histogram2d * SRC)
+     This function copies the histogram SRC into the pre-existing
+     histogram DEST, making DEST into an exact copy of SRC.  The two
+     histograms must be of the same size.
+
+ -- Function: gsl_histogram2d * gsl_histogram2d_clone (const
+          gsl_histogram2d * SRC)
+     This function returns a pointer to a newly created histogram which
+     is an exact copy of the histogram SRC.
+
+\1f
+File: gsl-ref.info,  Node: Updating and accessing 2D histogram elements,  Next: Searching 2D histogram ranges,  Prev: Copying 2D Histograms,  Up: Histograms
+
+22.16 Updating and accessing 2D histogram elements
+==================================================
+
+You can access the bins of a two-dimensional histogram either by
+specifying a pair of (x,y) coordinates or by using the bin indices
+(i,j) directly.  The functions for accessing the histogram through
+(x,y) coordinates use binary searches in the x and y directions to
+identify the bin which covers the appropriate range.
+
+ -- Function: int gsl_histogram2d_increment (gsl_histogram2d * H,
+          double X, double Y)
+     This function updates the histogram H by adding one (1.0) to the
+     bin whose x and y ranges contain the coordinates (X,Y).
+
+     If the point (x,y) lies inside the valid ranges of the histogram
+     then the function returns zero to indicate success.  If (x,y) lies
+     outside the limits of the histogram then the function returns
+     `GSL_EDOM', and none of the bins are modified.  The error handler
+     is not called, since it is often necessary to compute histograms
+     for a small range of a larger dataset, ignoring any coordinates
+     outside the range of interest.
+
+ -- Function: int gsl_histogram2d_accumulate (gsl_histogram2d * H,
+          double X, double Y, double WEIGHT)
+     This function is similar to `gsl_histogram2d_increment' but
+     increases the value of the appropriate bin in the histogram H by
+     the floating-point number WEIGHT.
+
+ -- Function: double gsl_histogram2d_get (const gsl_histogram2d * H,
+          size_t I, size_t J)
+     This function returns the contents of the (I,J)-th bin of the
+     histogram H.  If (I,J) lies outside the valid range of indices for
+     the histogram then the error handler is called with an error code
+     of `GSL_EDOM' and the function returns 0.
+
+ -- Function: int gsl_histogram2d_get_xrange (const gsl_histogram2d *
+          H, size_t I, double * XLOWER, double * XUPPER)
+ -- Function: int gsl_histogram2d_get_yrange (const gsl_histogram2d *
+          H, size_t J, double * YLOWER, double * YUPPER)
+     These functions find the upper and lower range limits of the I-th
+     and J-th bins in the x and y directions of the histogram H.  The
+     range limits are stored in XLOWER and XUPPER or YLOWER and YUPPER.
+     The lower limits are inclusive (i.e. events with these coordinates
+     are included in the bin) and the upper limits are exclusive (i.e.
+     events with the value of the upper limit are not included and fall
+     in the neighboring higher bin, if it exists).  The functions
+     return 0 to indicate success.  If I or J lies outside the valid
+     range of indices for the histogram then the error handler is
+     called with an error code of `GSL_EDOM'.
+
+ -- Function: double gsl_histogram2d_xmax (const gsl_histogram2d * H)
+ -- Function: double gsl_histogram2d_xmin (const gsl_histogram2d * H)
+ -- Function: size_t gsl_histogram2d_nx (const gsl_histogram2d * H)
+ -- Function: double gsl_histogram2d_ymax (const gsl_histogram2d * H)
+ -- Function: double gsl_histogram2d_ymin (const gsl_histogram2d * H)
+ -- Function: size_t gsl_histogram2d_ny (const gsl_histogram2d * H)
+     These functions return the maximum upper and minimum lower range
+     limits and the number of bins for the x and y directions of the
+     histogram H.  They provide a way of determining these values
+     without accessing the `gsl_histogram2d' struct directly.
+
+ -- Function: void gsl_histogram2d_reset (gsl_histogram2d * H)
+     This function resets all the bins of the histogram H to zero.
+
+\1f
+File: gsl-ref.info,  Node: Searching 2D histogram ranges,  Next: 2D Histogram Statistics,  Prev: Updating and accessing 2D histogram elements,  Up: Histograms
+
+22.17 Searching 2D histogram ranges
+===================================
+
+The following functions are used by the access and update routines to
+locate the bin which corresponds to a given (x,y) coordinate.
+
+ -- Function: int gsl_histogram2d_find (const gsl_histogram2d * H,
+          double X, double Y, size_t * I, size_t * J)
+     This function finds and sets the indices I and J to the to the bin
+     which covers the coordinates (X,Y). The bin is located using a
+     binary search.  The search includes an optimization for histograms
+     with uniform ranges, and will return the correct bin immediately
+     in this case. If (x,y) is found then the function sets the indices
+     (I,J) and returns `GSL_SUCCESS'.  If (x,y) lies outside the valid
+     range of the histogram then the function returns `GSL_EDOM' and
+     the error handler is invoked.
+
+\1f
+File: gsl-ref.info,  Node: 2D Histogram Statistics,  Next: 2D Histogram Operations,  Prev: Searching 2D histogram ranges,  Up: Histograms
+
+22.18 2D Histogram Statistics
+=============================
+
+ -- Function: double gsl_histogram2d_max_val (const gsl_histogram2d * H)
+     This function returns the maximum value contained in the histogram
+     bins.
+
+ -- Function: void gsl_histogram2d_max_bin (const gsl_histogram2d * H,
+          size_t * I, size_t * J)
+     This function finds the indices of the bin containing the maximum
+     value in the histogram H and stores the result in (I,J). In the
+     case where several bins contain the same maximum value the first
+     bin found is returned.
+
+ -- Function: double gsl_histogram2d_min_val (const gsl_histogram2d * H)
+     This function returns the minimum value contained in the histogram
+     bins.
+
+ -- Function: void gsl_histogram2d_min_bin (const gsl_histogram2d * H,
+          size_t * I, size_t * J)
+     This function finds the indices of the bin containing the minimum
+     value in the histogram H and stores the result in (I,J). In the
+     case where several bins contain the same maximum value the first
+     bin found is returned.
+
+ -- Function: double gsl_histogram2d_xmean (const gsl_histogram2d * H)
+     This function returns the mean of the histogrammed x variable,
+     where the histogram is regarded as a probability distribution.
+     Negative bin values are ignored for the purposes of this
+     calculation.
+
+ -- Function: double gsl_histogram2d_ymean (const gsl_histogram2d * H)
+     This function returns the mean of the histogrammed y variable,
+     where the histogram is regarded as a probability distribution.
+     Negative bin values are ignored for the purposes of this
+     calculation.
+
+ -- Function: double gsl_histogram2d_xsigma (const gsl_histogram2d * H)
+     This function returns the standard deviation of the histogrammed x
+     variable, where the histogram is regarded as a probability
+     distribution. Negative bin values are ignored for the purposes of
+     this calculation.
+
+ -- Function: double gsl_histogram2d_ysigma (const gsl_histogram2d * H)
+     This function returns the standard deviation of the histogrammed y
+     variable, where the histogram is regarded as a probability
+     distribution. Negative bin values are ignored for the purposes of
+     this calculation.
+
+ -- Function: double gsl_histogram2d_cov (const gsl_histogram2d * H)
+     This function returns the covariance of the histogrammed x and y
+     variables, where the histogram is regarded as a probability
+     distribution. Negative bin values are ignored for the purposes of
+     this calculation.
+
+ -- Function: double gsl_histogram2d_sum (const gsl_histogram2d * H)
+     This function returns the sum of all bin values. Negative bin
+     values are included in the sum.
+
+\1f
+File: gsl-ref.info,  Node: 2D Histogram Operations,  Next: Reading and writing 2D histograms,  Prev: 2D Histogram Statistics,  Up: Histograms
+
+22.19 2D Histogram Operations
+=============================
+
+ -- Function: int gsl_histogram2d_equal_bins_p (const gsl_histogram2d *
+          H1, const gsl_histogram2d * H2)
+     This function returns 1 if all the individual bin ranges of the two
+     histograms are identical, and 0 otherwise.
+
+ -- Function: int gsl_histogram2d_add (gsl_histogram2d * H1, const
+          gsl_histogram2d * H2)
+     This function adds the contents of the bins in histogram H2 to the
+     corresponding bins of histogram H1, i.e. h'_1(i,j) = h_1(i,j) +
+     h_2(i,j).  The two histograms must have identical bin ranges.
+
+ -- Function: int gsl_histogram2d_sub (gsl_histogram2d * H1, const
+          gsl_histogram2d * H2)
+     This function subtracts the contents of the bins in histogram H2
+     from the corresponding bins of histogram H1, i.e. h'_1(i,j) =
+     h_1(i,j) - h_2(i,j).  The two histograms must have identical bin
+     ranges.
+
+ -- Function: int gsl_histogram2d_mul (gsl_histogram2d * H1, const
+          gsl_histogram2d * H2)
+     This function multiplies the contents of the bins of histogram H1
+     by the contents of the corresponding bins in histogram H2, i.e.
+     h'_1(i,j) = h_1(i,j) * h_2(i,j).  The two histograms must have
+     identical bin ranges.
+
+ -- Function: int gsl_histogram2d_div (gsl_histogram2d * H1, const
+          gsl_histogram2d * H2)
+     This function divides the contents of the bins of histogram H1 by
+     the contents of the corresponding bins in histogram H2, i.e.
+     h'_1(i,j) = h_1(i,j) / h_2(i,j).  The two histograms must have
+     identical bin ranges.
+
+ -- Function: int gsl_histogram2d_scale (gsl_histogram2d * H, double
+          SCALE)
+     This function multiplies the contents of the bins of histogram H
+     by the constant SCALE, i.e. h'_1(i,j) = h_1(i,j) scale.
+
+ -- Function: int gsl_histogram2d_shift (gsl_histogram2d * H, double
+          OFFSET)
+     This function shifts the contents of the bins of histogram H by
+     the constant OFFSET, i.e. h'_1(i,j) = h_1(i,j) + offset.
+
+\1f
+File: gsl-ref.info,  Node: Reading and writing 2D histograms,  Next: Resampling from 2D histograms,  Prev: 2D Histogram Operations,  Up: Histograms
+
+22.20 Reading and writing 2D histograms
+=======================================
+
+The library provides functions for reading and writing two dimensional
+histograms to a file as binary data or formatted text.
+
+ -- Function: int gsl_histogram2d_fwrite (FILE * STREAM, const
+          gsl_histogram2d * H)
+     This function writes the ranges and bins of the histogram H to the
+     stream STREAM in binary format.  The return value is 0 for success
+     and `GSL_EFAILED' if there was a problem writing to the file.
+     Since the data is written in the native binary format it may not
+     be portable between different architectures.
+
+ -- Function: int gsl_histogram2d_fread (FILE * STREAM, gsl_histogram2d
+          * H)
+     This function reads into the histogram H from the stream STREAM in
+     binary format.  The histogram H must be preallocated with the
+     correct size since the function uses the number of x and y bins in
+     H to determine how many bytes to read.  The return value is 0 for
+     success and `GSL_EFAILED' if there was a problem reading from the
+     file.  The data is assumed to have been written in the native
+     binary format on the same architecture.
+
+ -- Function: int gsl_histogram2d_fprintf (FILE * STREAM, const
+          gsl_histogram2d * H, const char * RANGE_FORMAT, const char *
+          BIN_FORMAT)
+     This function writes the ranges and bins of the histogram H
+     line-by-line to the stream STREAM using the format specifiers
+     RANGE_FORMAT and BIN_FORMAT.  These should be one of the `%g',
+     `%e' or `%f' formats for floating point numbers.  The function
+     returns 0 for success and `GSL_EFAILED' if there was a problem
+     writing to the file.  The histogram output is formatted in five
+     columns, and the columns are separated by spaces, like this,
+
+          xrange[0] xrange[1] yrange[0] yrange[1] bin(0,0)
+          xrange[0] xrange[1] yrange[1] yrange[2] bin(0,1)
+          xrange[0] xrange[1] yrange[2] yrange[3] bin(0,2)
+          ....
+          xrange[0] xrange[1] yrange[ny-1] yrange[ny] bin(0,ny-1)
+
+          xrange[1] xrange[2] yrange[0] yrange[1] bin(1,0)
+          xrange[1] xrange[2] yrange[1] yrange[2] bin(1,1)
+          xrange[1] xrange[2] yrange[1] yrange[2] bin(1,2)
+          ....
+          xrange[1] xrange[2] yrange[ny-1] yrange[ny] bin(1,ny-1)
+
+          ....
+
+          xrange[nx-1] xrange[nx] yrange[0] yrange[1] bin(nx-1,0)
+          xrange[nx-1] xrange[nx] yrange[1] yrange[2] bin(nx-1,1)
+          xrange[nx-1] xrange[nx] yrange[1] yrange[2] bin(nx-1,2)
+          ....
+          xrange[nx-1] xrange[nx] yrange[ny-1] yrange[ny] bin(nx-1,ny-1)
+
+     Each line contains the lower and upper limits of the bin and the
+     contents of the bin.  Since the upper limits of the each bin are
+     the lower limits of the neighboring bins there is duplication of
+     these values but this allows the histogram to be manipulated with
+     line-oriented tools.
+
+ -- Function: int gsl_histogram2d_fscanf (FILE * STREAM,
+          gsl_histogram2d * H)
+     This function reads formatted data from the stream STREAM into the
+     histogram H.  The data is assumed to be in the five-column format
+     used by `gsl_histogram2d_fprintf'.  The histogram H must be
+     preallocated with the correct lengths since the function uses the
+     sizes of H to determine how many numbers to read.  The function
+     returns 0 for success and `GSL_EFAILED' if there was a problem
+     reading from the file.
+
+\1f
+File: gsl-ref.info,  Node: Resampling from 2D histograms,  Next: Example programs for 2D histograms,  Prev: Reading and writing 2D histograms,  Up: Histograms
+
+22.21 Resampling from 2D histograms
+===================================
+
+As in the one-dimensional case, a two-dimensional histogram made by
+counting events can be regarded as a measurement of a probability
+distribution.  Allowing for statistical error, the height of each bin
+represents the probability of an event where (x,y) falls in the range
+of that bin.  For a two-dimensional histogram the probability
+distribution takes the form p(x,y) dx dy where,
+
+     p(x,y) = n_{ij}/ (N A_{ij})
+
+In this equation n_{ij} is the number of events in the bin which
+contains (x,y), A_{ij} is the area of the bin and N is the total number
+of events.  The distribution of events within each bin is assumed to be
+uniform.
+
+ -- Data Type: gsl_histogram2d_pdf
+    `size_t nx, ny'
+          This is the number of histogram bins used to approximate the
+          probability distribution function in the x and y directions.
+
+    `double * xrange'
+          The ranges of the bins in the x-direction are stored in an
+          array of NX + 1 elements pointed to by XRANGE.
+
+    `double * yrange'
+          The ranges of the bins in the y-direction are stored in an
+          array of NY + 1 pointed to by YRANGE.
+
+    `double * sum'
+          The cumulative probability for the bins is stored in an array
+          of NX*NY elements pointed to by SUM.
+
+The following functions allow you to create a `gsl_histogram2d_pdf'
+struct which represents a two dimensional probability distribution and
+generate random samples from it.
+
+ -- Function: gsl_histogram2d_pdf * gsl_histogram2d_pdf_alloc (size_t
+          NX, size_t NY)
+     This function allocates memory for a two-dimensional probability
+     distribution of size NX-by-NY and returns a pointer to a newly
+     initialized `gsl_histogram2d_pdf' struct. If insufficient memory
+     is available a null pointer is returned and the error handler is
+     invoked with an error code of `GSL_ENOMEM'.
+
+ -- Function: int gsl_histogram2d_pdf_init (gsl_histogram2d_pdf * P,
+          const gsl_histogram2d * H)
+     This function initializes the two-dimensional probability
+     distribution calculated P from the histogram H.  If any of the
+     bins of H are negative then the error handler is invoked with an
+     error code of `GSL_EDOM' because a probability distribution cannot
+     contain negative values.
+
+ -- Function: void gsl_histogram2d_pdf_free (gsl_histogram2d_pdf * P)
+     This function frees the two-dimensional probability distribution
+     function P and all of the memory associated with it.
+
+ -- Function: int gsl_histogram2d_pdf_sample (const gsl_histogram2d_pdf
+          * P, double R1, double R2, double * X, double * Y)
+     This function uses two uniform random numbers between zero and one,
+     R1 and R2, to compute a single random sample from the
+     two-dimensional probability distribution P.
+
+\1f
+File: gsl-ref.info,  Node: Example programs for 2D histograms,  Prev: Resampling from 2D histograms,  Up: Histograms
+
+22.22 Example programs for 2D histograms
+========================================
+
+This program demonstrates two features of two-dimensional histograms.
+First a 10-by-10 two-dimensional histogram is created with x and y
+running from 0 to 1.  Then a few sample points are added to the
+histogram, at (0.3,0.3) with a height of 1, at (0.8,0.1) with a height
+of 5 and at (0.7,0.9) with a height of 0.5.  This histogram with three
+events is used to generate a random sample of 1000 simulated events,
+which are printed out.
+
+     #include <stdio.h>
+     #include <gsl/gsl_rng.h>
+     #include <gsl/gsl_histogram2d.h>
+
+     int
+     main (void)
+     {
+       const gsl_rng_type * T;
+       gsl_rng * r;
+
+       gsl_histogram2d * h = gsl_histogram2d_alloc (10, 10);
+
+       gsl_histogram2d_set_ranges_uniform (h,
+                                           0.0, 1.0,
+                                           0.0, 1.0);
+
+       gsl_histogram2d_accumulate (h, 0.3, 0.3, 1);
+       gsl_histogram2d_accumulate (h, 0.8, 0.1, 5);
+       gsl_histogram2d_accumulate (h, 0.7, 0.9, 0.5);
+
+       gsl_rng_env_setup ();
+
+       T = gsl_rng_default;
+       r = gsl_rng_alloc (T);
+
+       {
+         int i;
+         gsl_histogram2d_pdf * p
+           = gsl_histogram2d_pdf_alloc (h->nx, h->ny);
+
+         gsl_histogram2d_pdf_init (p, h);
+
+         for (i = 0; i < 1000; i++) {
+           double x, y;
+           double u = gsl_rng_uniform (r);
+           double v = gsl_rng_uniform (r);
+
+           gsl_histogram2d_pdf_sample (p, u, v, &x, &y);
+
+           printf ("%g %g\n", x, y);
+         }
+
+         gsl_histogram2d_pdf_free (p);
+       }
+
+       gsl_histogram2d_free (h);
+       gsl_rng_free (r);
+
+       return 0;
+     }
+
+
+\1f
+File: gsl-ref.info,  Node: N-tuples,  Next: Monte Carlo Integration,  Prev: Histograms,  Up: Top
+
+23 N-tuples
+***********
+
+This chapter describes functions for creating and manipulating
+"ntuples", sets of values associated with events.  The ntuples are
+stored in files. Their values can be extracted in any combination and
+"booked" in a histogram using a selection function.
+
+   The values to be stored are held in a user-defined data structure,
+and an ntuple is created associating this data structure with a file.
+The values are then written to the file (normally inside a loop) using
+the ntuple functions described below.
+
+   A histogram can be created from ntuple data by providing a selection
+function and a value function.  The selection function specifies whether
+an event should be included in the subset to be analyzed or not. The
+value function computes the entry to be added to the histogram for each
+event.
+
+   All the ntuple functions are defined in the header file
+`gsl_ntuple.h'
+
+* Menu:
+
+* The ntuple struct::
+* Creating ntuples::
+* Opening an existing ntuple file::
+* Writing ntuples::
+* Reading ntuples ::
+* Closing an ntuple file::
+* Histogramming ntuple values::
+* Example ntuple programs::
+* Ntuple References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: The ntuple struct,  Next: Creating ntuples,  Up: N-tuples
+
+23.1 The ntuple struct
+======================
+
+Ntuples are manipulated using the `gsl_ntuple' struct. This struct
+contains information on the file where the ntuple data is stored, a
+pointer to the current ntuple data row and the size of the user-defined
+ntuple data struct.
+
+     typedef struct {
+         FILE * file;
+         void * ntuple_data;
+         size_t size;
+     } gsl_ntuple;
+
+\1f
+File: gsl-ref.info,  Node: Creating ntuples,  Next: Opening an existing ntuple file,  Prev: The ntuple struct,  Up: N-tuples
+
+23.2 Creating ntuples
+=====================
+
+ -- Function: gsl_ntuple * gsl_ntuple_create (char * FILENAME, void *
+          NTUPLE_DATA, size_t SIZE)
+     This function creates a new write-only ntuple file FILENAME for
+     ntuples of size SIZE and returns a pointer to the newly created
+     ntuple struct.  Any existing file with the same name is truncated
+     to zero length and overwritten.  A pointer to memory for the
+     current ntuple row NTUPLE_DATA must be supplied--this is used to
+     copy ntuples in and out of the file.
+
+\1f
+File: gsl-ref.info,  Node: Opening an existing ntuple file,  Next: Writing ntuples,  Prev: Creating ntuples,  Up: N-tuples
+
+23.3 Opening an existing ntuple file
+====================================
+
+ -- Function: gsl_ntuple * gsl_ntuple_open (char * FILENAME, void *
+          NTUPLE_DATA, size_t SIZE)
+     This function opens an existing ntuple file FILENAME for reading
+     and returns a pointer to a corresponding ntuple struct. The
+     ntuples in the file must have size SIZE.  A pointer to memory for
+     the current ntuple row NTUPLE_DATA must be supplied--this is used
+     to copy ntuples in and out of the file.
+
+\1f
+File: gsl-ref.info,  Node: Writing ntuples,  Next: Reading ntuples,  Prev: Opening an existing ntuple file,  Up: N-tuples
+
+23.4 Writing ntuples
+====================
+
+ -- Function: int gsl_ntuple_write (gsl_ntuple * NTUPLE)
+     This function writes the current ntuple NTUPLE->NTUPLE_DATA of
+     size NTUPLE->SIZE to the corresponding file.
+
+ -- Function: int gsl_ntuple_bookdata (gsl_ntuple * NTUPLE)
+     This function is a synonym for `gsl_ntuple_write'.
+
+\1f
+File: gsl-ref.info,  Node: Reading ntuples,  Next: Closing an ntuple file,  Prev: Writing ntuples,  Up: N-tuples
+
+23.5 Reading ntuples
+====================
+
+ -- Function: int gsl_ntuple_read (gsl_ntuple * NTUPLE)
+     This function reads the current row of the ntuple file for NTUPLE
+     and stores the values in NTUPLE->DATA.
+
+\1f
+File: gsl-ref.info,  Node: Closing an ntuple file,  Next: Histogramming ntuple values,  Prev: Reading ntuples,  Up: N-tuples
+
+23.6 Closing an ntuple file
+===========================
+
+ -- Function: int gsl_ntuple_close (gsl_ntuple * NTUPLE)
+     This function closes the ntuple file NTUPLE and frees its
+     associated allocated memory.
+
+\1f
+File: gsl-ref.info,  Node: Histogramming ntuple values,  Next: Example ntuple programs,  Prev: Closing an ntuple file,  Up: N-tuples
+
+23.7 Histogramming ntuple values
+================================
+
+Once an ntuple has been created its contents can be histogrammed in
+various ways using the function `gsl_ntuple_project'.  Two user-defined
+functions must be provided, a function to select events and a function
+to compute scalar values. The selection function and the value function
+both accept the ntuple row as a first argument and other parameters as
+a second argument.
+
+   The "selection function" determines which ntuple rows are selected
+for histogramming.  It is defined by the following struct,
+
+     typedef struct {
+       int (* function) (void * ntuple_data, void * params);
+       void * params;
+     } gsl_ntuple_select_fn;
+
+The struct component FUNCTION should return a non-zero value for each
+ntuple row that is to be included in the histogram.
+
+   The "value function" computes scalar values for those ntuple rows
+selected by the selection function,
+
+     typedef struct {
+       double (* function) (void * ntuple_data, void * params);
+       void * params;
+     } gsl_ntuple_value_fn;
+
+In this case the struct component FUNCTION should return the value to
+be added to the histogram for the ntuple row.
+
+ -- Function: int gsl_ntuple_project (gsl_histogram * H, gsl_ntuple *
+          NTUPLE, gsl_ntuple_value_fn * VALUE_FUNC,
+          gsl_ntuple_select_fn * SELECT_FUNC)
+     This function updates the histogram H from the ntuple NTUPLE using
+     the functions VALUE_FUNC and SELECT_FUNC. For each ntuple row
+     where the selection function SELECT_FUNC is non-zero the
+     corresponding value of that row is computed using the function
+     VALUE_FUNC and added to the histogram.  Those ntuple rows where
+     SELECT_FUNC returns zero are ignored.  New entries are added to
+     the histogram, so subsequent calls can be used to accumulate
+     further data in the same histogram.
+
+\1f
+File: gsl-ref.info,  Node: Example ntuple programs,  Next: Ntuple References and Further Reading,  Prev: Histogramming ntuple values,  Up: N-tuples
+
+23.8 Examples
+=============
+
+The following example programs demonstrate the use of ntuples in
+managing a large dataset.  The first program creates a set of 10,000
+simulated "events", each with 3 associated values (x,y,z).  These are
+generated from a Gaussian distribution with unit variance, for
+demonstration purposes, and written to the ntuple file `test.dat'.
+
+     #include <gsl/gsl_ntuple.h>
+     #include <gsl/gsl_rng.h>
+     #include <gsl/gsl_randist.h>
+
+     struct data
+     {
+       double x;
+       double y;
+       double z;
+     };
+
+     int
+     main (void)
+     {
+       const gsl_rng_type * T;
+       gsl_rng * r;
+
+       struct data ntuple_row;
+       int i;
+
+       gsl_ntuple *ntuple
+         = gsl_ntuple_create ("test.dat", &ntuple_row,
+                              sizeof (ntuple_row));
+
+       gsl_rng_env_setup ();
+
+       T = gsl_rng_default;
+       r = gsl_rng_alloc (T);
+
+       for (i = 0; i < 10000; i++)
+         {
+           ntuple_row.x = gsl_ran_ugaussian (r);
+           ntuple_row.y = gsl_ran_ugaussian (r);
+           ntuple_row.z = gsl_ran_ugaussian (r);
+
+           gsl_ntuple_write (ntuple);
+         }
+
+       gsl_ntuple_close (ntuple);
+       gsl_rng_free (r);
+
+       return 0;
+     }
+
+The next program analyses the ntuple data in the file `test.dat'.  The
+analysis procedure is to compute the squared-magnitude of each event,
+E^2=x^2+y^2+z^2, and select only those which exceed a lower limit of
+1.5.  The selected events are then histogrammed using their E^2 values.
+
+     #include <math.h>
+     #include <gsl/gsl_ntuple.h>
+     #include <gsl/gsl_histogram.h>
+
+     struct data
+     {
+       double x;
+       double y;
+       double z;
+     };
+
+     int sel_func (void *ntuple_data, void *params);
+     double val_func (void *ntuple_data, void *params);
+
+     int
+     main (void)
+     {
+       struct data ntuple_row;
+
+       gsl_ntuple *ntuple
+         = gsl_ntuple_open ("test.dat", &ntuple_row,
+                            sizeof (ntuple_row));
+       double lower = 1.5;
+
+       gsl_ntuple_select_fn S;
+       gsl_ntuple_value_fn V;
+
+       gsl_histogram *h = gsl_histogram_alloc (100);
+       gsl_histogram_set_ranges_uniform(h, 0.0, 10.0);
+
+       S.function = &sel_func;
+       S.params = &lower;
+
+       V.function = &val_func;
+       V.params = 0;
+
+       gsl_ntuple_project (h, ntuple, &V, &S);
+       gsl_histogram_fprintf (stdout, h, "%f", "%f");
+       gsl_histogram_free (h);
+       gsl_ntuple_close (ntuple);
+
+       return 0;
+     }
+
+     int
+     sel_func (void *ntuple_data, void *params)
+     {
+       struct data * data = (struct data *) ntuple_data;
+       double x, y, z, E2, scale;
+       scale = *(double *) params;
+
+       x = data->x;
+       y = data->y;
+       z = data->z;
+
+       E2 = x * x + y * y + z * z;
+
+       return E2 > scale;
+     }
+
+     double
+     val_func (void *ntuple_data, void *params)
+     {
+       struct data * data = (struct data *) ntuple_data;
+       double x, y, z;
+
+       x = data->x;
+       y = data->y;
+       z = data->z;
+
+       return x * x + y * y + z * z;
+     }
+
+   The following plot shows the distribution of the selected events.
+Note the cut-off at the lower bound.
+
+\1f
+File: gsl-ref.info,  Node: Ntuple References and Further Reading,  Prev: Example ntuple programs,  Up: N-tuples
+
+23.9 References and Further Reading
+===================================
+
+Further information on the use of ntuples can be found in the
+documentation for the CERN packages PAW and HBOOK (available online).
+
+\1f
+File: gsl-ref.info,  Node: Monte Carlo Integration,  Next: Simulated Annealing,  Prev: N-tuples,  Up: Top
+
+24 Monte Carlo Integration
+**************************
+
+This chapter describes routines for multidimensional Monte Carlo
+integration.  These include the traditional Monte Carlo method and
+adaptive algorithms such as VEGAS and MISER which use importance
+sampling and stratified sampling techniques. Each algorithm computes an
+estimate of a multidimensional definite integral of the form,
+
+     I = \int_xl^xu dx \int_yl^yu  dy ...  f(x, y, ...)
+
+over a hypercubic region ((x_l,x_u), (y_l,y_u), ...) using a fixed
+number of function calls.  The routines also provide a statistical
+estimate of the error on the result.  This error estimate should be
+taken as a guide rather than as a strict error bound--random sampling
+of the region may not uncover all the important features of the
+function, resulting in an underestimate of the error.
+
+   The functions are defined in separate header files for each routine,
+`gsl_monte_plain.h', `gsl_monte_miser.h' and `gsl_monte_vegas.h'.
+
+* Menu:
+
+* Monte Carlo Interface::
+* PLAIN Monte Carlo::
+* MISER::
+* VEGAS::
+* Monte Carlo Examples::
+* Monte Carlo Integration References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Monte Carlo Interface,  Next: PLAIN Monte Carlo,  Up: Monte Carlo Integration
+
+24.1 Interface
+==============
+
+All of the Monte Carlo integration routines use the same general form of
+interface.  There is an allocator to allocate memory for control
+variables and workspace, a routine to initialize those control
+variables, the integrator itself, and a function to free the space when
+done.
+
+   Each integration function requires a random number generator to be
+supplied, and returns an estimate of the integral and its standard
+deviation.  The accuracy of the result is determined by the number of
+function calls specified by the user.  If a known level of accuracy is
+required this can be achieved by calling the integrator several times
+and averaging the individual results until the desired accuracy is
+obtained.
+
+   Random sample points used within the Monte Carlo routines are always
+chosen strictly within the integration region, so that endpoint
+singularities are automatically avoided.
+
+   The function to be integrated has its own datatype, defined in the
+header file `gsl_monte.h'.
+
+ -- Data Type: gsl_monte_function
+     This data type defines a general function with parameters for Monte
+     Carlo integration.
+
+    `double (* f) (double * X, size_t DIM, void * PARAMS)'
+          this function should return the value f(x,params) for the
+          argument X and parameters PARAMS, where X is an array of size
+          DIM giving the coordinates of the point where the function is
+          to be evaluated.
+
+    `size_t dim'
+          the number of dimensions for X.
+
+    `void * params'
+          a pointer to the parameters of the function.
+
+Here is an example for a quadratic function in two dimensions,
+
+     f(x,y) = a x^2 + b x y + c y^2
+
+with a = 3, b = 2, c = 1.  The following code defines a
+`gsl_monte_function' `F' which you could pass to an integrator:
+
+     struct my_f_params { double a; double b; double c; };
+
+     double
+     my_f (double x[], size_t dim, void * p) {
+        struct my_f_params * fp = (struct my_f_params *)p;
+
+        if (dim != 2)
+           {
+             fprintf (stderr, "error: dim != 2");
+             abort ();
+           }
+
+        return  fp->a * x[0] * x[0]
+                  + fp->b * x[0] * x[1]
+                    + fp->c * x[1] * x[1];
+     }
+
+     gsl_monte_function F;
+     struct my_f_params params = { 3.0, 2.0, 1.0 };
+
+     F.f = &my_f;
+     F.dim = 2;
+     F.params = &params;
+
+The function f(x) can be evaluated using the following macro,
+
+     #define GSL_MONTE_FN_EVAL(F,x)
+         (*((F)->f))(x,(F)->dim,(F)->params)
+
+\1f
+File: gsl-ref.info,  Node: PLAIN Monte Carlo,  Next: MISER,  Prev: Monte Carlo Interface,  Up: Monte Carlo Integration
+
+24.2 PLAIN Monte Carlo
+======================
+
+The plain Monte Carlo algorithm samples points randomly from the
+integration region to estimate the integral and its error.  Using this
+algorithm the estimate of the integral E(f; N) for N randomly
+distributed points x_i is given by,
+
+     E(f; N) = =  V <f> = (V / N) \sum_i^N f(x_i)
+
+where V is the volume of the integration region.  The error on this
+estimate \sigma(E;N) is calculated from the estimated variance of the
+mean,
+
+     \sigma^2 (E; N) = (V^2 / N^2) \sum_i^N (f(x_i) -  <f>)^2.
+
+For large N this variance decreases asymptotically as \Var(f)/N, where
+\Var(f) is the true variance of the function over the integration
+region.  The error estimate itself should decrease as
+\sigma(f)/\sqrt{N}.  The familiar law of errors decreasing as
+1/\sqrt{N} applies--to reduce the error by a factor of 10 requires a
+100-fold increase in the number of sample points.
+
+   The functions described in this section are declared in the header
+file `gsl_monte_plain.h'.
+
+ -- Function: gsl_monte_plain_state * gsl_monte_plain_alloc (size_t DIM)
+     This function allocates and initializes a workspace for Monte Carlo
+     integration in DIM dimensions.
+
+ -- Function: int gsl_monte_plain_init (gsl_monte_plain_state* S)
+     This function initializes a previously allocated integration state.
+     This allows an existing workspace to be reused for different
+     integrations.
+
+ -- Function: int gsl_monte_plain_integrate (gsl_monte_function * F,
+          const double XL[], const double XU[], size_t DIM, size_t
+          CALLS, gsl_rng * R, gsl_monte_plain_state * S, double *
+          RESULT, double * ABSERR)
+     This routines uses the plain Monte Carlo algorithm to integrate the
+     function F over the DIM-dimensional hypercubic region defined by
+     the lower and upper limits in the arrays XL and XU, each of size
+     DIM.  The integration uses a fixed number of function calls CALLS,
+     and obtains random sampling points using the random number
+     generator R. A previously allocated workspace S must be supplied.
+     The result of the integration is returned in RESULT, with an
+     estimated absolute error ABSERR.
+
+ -- Function: void gsl_monte_plain_free (gsl_monte_plain_state * S)
+     This function frees the memory associated with the integrator state
+     S.
+
+\1f
+File: gsl-ref.info,  Node: MISER,  Next: VEGAS,  Prev: PLAIN Monte Carlo,  Up: Monte Carlo Integration
+
+24.3 MISER
+==========
+
+The MISER algorithm of Press and Farrar is based on recursive
+stratified sampling.  This technique aims to reduce the overall
+integration error by concentrating integration points in the regions of
+highest variance.
+
+   The idea of stratified sampling begins with the observation that for
+two disjoint regions a and b with Monte Carlo estimates of the integral
+E_a(f) and E_b(f) and variances \sigma_a^2(f) and \sigma_b^2(f), the
+variance \Var(f) of the combined estimate E(f) = (1/2) (E_a(f) + E_b(f))
+is given by,
+
+     \Var(f) = (\sigma_a^2(f) / 4 N_a) + (\sigma_b^2(f) / 4 N_b).
+
+It can be shown that this variance is minimized by distributing the
+points such that,
+
+     N_a / (N_a + N_b) = \sigma_a / (\sigma_a + \sigma_b).
+
+Hence the smallest error estimate is obtained by allocating sample
+points in proportion to the standard deviation of the function in each
+sub-region.
+
+   The MISER algorithm proceeds by bisecting the integration region
+along one coordinate axis to give two sub-regions at each step.  The
+direction is chosen by examining all d possible bisections and
+selecting the one which will minimize the combined variance of the two
+sub-regions.  The variance in the sub-regions is estimated by sampling
+with a fraction of the total number of points available to the current
+step.  The same procedure is then repeated recursively for each of the
+two half-spaces from the best bisection. The remaining sample points are
+allocated to the sub-regions using the formula for N_a and N_b.  This
+recursive allocation of integration points continues down to a
+user-specified depth where each sub-region is integrated using a plain
+Monte Carlo estimate.  These individual values and their error
+estimates are then combined upwards to give an overall result and an
+estimate of its error.
+
+   The functions described in this section are declared in the header
+file `gsl_monte_miser.h'.
+
+ -- Function: gsl_monte_miser_state * gsl_monte_miser_alloc (size_t DIM)
+     This function allocates and initializes a workspace for Monte Carlo
+     integration in DIM dimensions.  The workspace is used to maintain
+     the state of the integration.
+
+ -- Function: int gsl_monte_miser_init (gsl_monte_miser_state* S)
+     This function initializes a previously allocated integration state.
+     This allows an existing workspace to be reused for different
+     integrations.
+
+ -- Function: int gsl_monte_miser_integrate (gsl_monte_function * F,
+          const double XL[], const double XU[], size_t DIM, size_t
+          CALLS, gsl_rng * R, gsl_monte_miser_state * S, double *
+          RESULT, double * ABSERR)
+     This routines uses the MISER Monte Carlo algorithm to integrate the
+     function F over the DIM-dimensional hypercubic region defined by
+     the lower and upper limits in the arrays XL and XU, each of size
+     DIM.  The integration uses a fixed number of function calls CALLS,
+     and obtains random sampling points using the random number
+     generator R. A previously allocated workspace S must be supplied.
+     The result of the integration is returned in RESULT, with an
+     estimated absolute error ABSERR.
+
+ -- Function: void gsl_monte_miser_free (gsl_monte_miser_state * S)
+     This function frees the memory associated with the integrator state
+     S.
+
+   The MISER algorithm has several configurable parameters which can be
+changed using the following two functions.(1)
+
+ -- Function: void gsl_monte_miser_params_get (const
+          gsl_monte_miser_state * S, gsl_monte_miser_params * PARAMS)
+     This function copies the parameters of the integrator state into
+     the user-supplied PARAMS structure.
+
+ -- Function: void gsl_monte_miser_params_set (gsl_monte_miser_state *
+          S, const gsl_monte_miser_params * PARAMS)
+     This function sets the integrator parameters based on values
+     provided in the PARAMS structure.
+
+   Typically the values of the parameters are first read using
+`gsl_monte_miser_params_get', the necessary changes are made to the
+fields of the PARAMS structure, and the values are copied back into the
+integrator state using `gsl_monte_miser_params_set'.  The functions use
+the `gsl_monte_miser_params' structure which contains the following
+fields:
+
+ -- Variable: double estimate_frac
+     This parameter specifies the fraction of the currently available
+     number of function calls which are allocated to estimating the
+     variance at each recursive step. The default value is 0.1.
+
+ -- Variable: size_t min_calls
+     This parameter specifies the minimum number of function calls
+     required for each estimate of the variance. If the number of
+     function calls allocated to the estimate using ESTIMATE_FRAC falls
+     below MIN_CALLS then MIN_CALLS are used instead.  This ensures
+     that each estimate maintains a reasonable level of accuracy.  The
+     default value of MIN_CALLS is `16 * dim'.
+
+ -- Variable: size_t min_calls_per_bisection
+     This parameter specifies the minimum number of function calls
+     required to proceed with a bisection step.  When a recursive step
+     has fewer calls available than MIN_CALLS_PER_BISECTION it performs
+     a plain Monte Carlo estimate of the current sub-region and
+     terminates its branch of the recursion.  The default value of this
+     parameter is `32 * min_calls'.
+
+ -- Variable: double alpha
+     This parameter controls how the estimated variances for the two
+     sub-regions of a bisection are combined when allocating points.
+     With recursive sampling the overall variance should scale better
+     than 1/N, since the values from the sub-regions will be obtained
+     using a procedure which explicitly minimizes their variance.  To
+     accommodate this behavior the MISER algorithm allows the total
+     variance to depend on a scaling parameter \alpha,
+
+          \Var(f) = {\sigma_a \over N_a^\alpha} + {\sigma_b \over N_b^\alpha}.
+
+     The authors of the original paper describing MISER recommend the
+     value \alpha = 2 as a good choice, obtained from numerical
+     experiments, and this is used as the default value in this
+     implementation.
+
+ -- Variable: double dither
+     This parameter introduces a random fractional variation of size
+     DITHER into each bisection, which can be used to break the
+     symmetry of integrands which are concentrated near the exact
+     center of the hypercubic integration region.  The default value of
+     dither is zero, so no variation is introduced. If needed, a
+     typical value of DITHER is 0.1.
+
+   ---------- Footnotes ----------
+
+   (1) The previous method of accessing these fields directly through
+the `gsl_monte_miser_state' struct is now deprecated.
+
+\1f
+File: gsl-ref.info,  Node: VEGAS,  Next: Monte Carlo Examples,  Prev: MISER,  Up: Monte Carlo Integration
+
+24.4 VEGAS
+==========
+
+The VEGAS algorithm of Lepage is based on importance sampling.  It
+samples points from the probability distribution described by the
+function |f|, so that the points are concentrated in the regions that
+make the largest contribution to the integral.
+
+   In general, if the Monte Carlo integral of f is sampled with points
+distributed according to a probability distribution described by the
+function g, we obtain an estimate E_g(f; N),
+
+     E_g(f; N) = E(f/g; N)
+
+with a corresponding variance,
+
+     \Var_g(f; N) = \Var(f/g; N).
+
+If the probability distribution is chosen as g = |f|/I(|f|) then it can
+be shown that the variance V_g(f; N) vanishes, and the error in the
+estimate will be zero.  In practice it is not possible to sample from
+the exact distribution g for an arbitrary function, so importance
+sampling algorithms aim to produce efficient approximations to the
+desired distribution.
+
+   The VEGAS algorithm approximates the exact distribution by making a
+number of passes over the integration region while histogramming the
+function f. Each histogram is used to define a sampling distribution
+for the next pass.  Asymptotically this procedure converges to the
+desired distribution. In order to avoid the number of histogram bins
+growing like K^d the probability distribution is approximated by a
+separable function: g(x_1, x_2, ...) = g_1(x_1) g_2(x_2) ...  so that
+the number of bins required is only Kd.  This is equivalent to locating
+the peaks of the function from the projections of the integrand onto
+the coordinate axes.  The efficiency of VEGAS depends on the validity
+of this assumption.  It is most efficient when the peaks of the
+integrand are well-localized.  If an integrand can be rewritten in a
+form which is approximately separable this will increase the efficiency
+of integration with VEGAS.
+
+   VEGAS incorporates a number of additional features, and combines both
+stratified sampling and importance sampling.  The integration region is
+divided into a number of "boxes", with each box getting a fixed number
+of points (the goal is 2).  Each box can then have a fractional number
+of bins, but if the ratio of bins-per-box is less than two, Vegas
+switches to a kind variance reduction (rather than importance sampling).
+
+ -- Function: gsl_monte_vegas_state * gsl_monte_vegas_alloc (size_t DIM)
+     This function allocates and initializes a workspace for Monte Carlo
+     integration in DIM dimensions.  The workspace is used to maintain
+     the state of the integration.
+
+ -- Function: int gsl_monte_vegas_init (gsl_monte_vegas_state* S)
+     This function initializes a previously allocated integration state.
+     This allows an existing workspace to be reused for different
+     integrations.
+
+ -- Function: int gsl_monte_vegas_integrate (gsl_monte_function * F,
+          double XL[], double XU[], size_t DIM, size_t CALLS, gsl_rng *
+          R, gsl_monte_vegas_state * S, double * RESULT, double *
+          ABSERR)
+     This routines uses the VEGAS Monte Carlo algorithm to integrate the
+     function F over the DIM-dimensional hypercubic region defined by
+     the lower and upper limits in the arrays XL and XU, each of size
+     DIM.  The integration uses a fixed number of function calls CALLS,
+     and obtains random sampling points using the random number
+     generator R. A previously allocated workspace S must be supplied.
+     The result of the integration is returned in RESULT, with an
+     estimated absolute error ABSERR.  The result and its error
+     estimate are based on a weighted average of independent samples.
+     The chi-squared per degree of freedom for the weighted average is
+     returned via the state struct component, S->CHISQ, and must be
+     consistent with 1 for the weighted average to be reliable.
+
+ -- Function: void gsl_monte_vegas_free (gsl_monte_vegas_state * S)
+     This function frees the memory associated with the integrator state
+     S.
+
+   The VEGAS algorithm computes a number of independent estimates of the
+integral internally, according to the `iterations' parameter described
+below, and returns their weighted average.  Random sampling of the
+integrand can occasionally produce an estimate where the error is zero,
+particularly if the function is constant in some regions. An estimate
+with zero error causes the weighted average to break down and must be
+handled separately. In the original Fortran implementations of VEGAS
+the error estimate is made non-zero by substituting a small value
+(typically `1e-30').  The implementation in GSL differs from this and
+avoids the use of an arbitrary constant--it either assigns the value a
+weight which is the average weight of the preceding estimates or
+discards it according to the following procedure,
+
+current estimate has zero error, weighted average has finite error
+     The current estimate is assigned a weight which is the average
+     weight of the preceding estimates.
+
+current estimate has finite error, previous estimates had zero error
+     The previous estimates are discarded and the weighted averaging
+     procedure begins with the current estimate.
+
+current estimate has zero error, previous estimates had zero error
+     The estimates are averaged using the arithmetic mean, but no error
+     is computed.
+
+   The convergence of the algorithm can be tested using the overall
+chi-squared value of the results, which is available from the following
+function:
+
+ -- Function: double gsl_monte_vegas_chisq (const gsl_monte_vegas_state
+          * S)
+     This function returns the chi-squared per degree of freedom for the
+     weighted estimate of the integral.  The returned value should be
+     close to 1.  A value which differs significantly from 1 indicates
+     that the values from different iterations are inconsistent.  In
+     this case the weighted error will be under-estimated, and further
+     iterations of the algorithm are needed to obtain reliable results.
+
+ -- Function: void gsl_monte_vegas_runval (const gsl_monte_vegas_state
+          * S, double * RESULT, double * SIGMA)
+     This function returns the raw (unaveraged) values of the integral
+     RESULT and its error SIGMA from the most recent iteration of the
+     algorithm.
+
+   The VEGAS algorithm is highly configurable. Several parameters can
+be changed using the following two functions.
+
+ -- Function: void gsl_monte_vegas_params_get (const
+          gsl_monte_vegas_state * S, gsl_monte_vegas_params * PARAMS)
+     This function copies the parameters of the integrator state into
+     the user-supplied PARAMS structure.
+
+ -- Function: void gsl_monte_vegas_params_set (gsl_monte_vegas_state *
+          S, const gsl_monte_vegas_params * PARAMS)
+     This function sets the integrator parameters based on values
+     provided in the PARAMS structure.
+
+   Typically the values of the parameters are first read using
+`gsl_monte_vegas_params_get', the necessary changes are made to the
+fields of the PARAMS structure, and the values are copied back into the
+integrator state using `gsl_monte_vegas_params_set'.  The functions use
+the `gsl_monte_vegas_params' structure which contains the following
+fields:
+
+ -- Variable: double alpha
+     The parameter `alpha' controls the stiffness of the rebinning
+     algorithm.  It is typically set between one and two. A value of
+     zero prevents rebinning of the grid.  The default value is 1.5.
+
+ -- Variable: size_t iterations
+     The number of iterations to perform for each call to the routine.
+     The default value is 5 iterations.
+
+ -- Variable: int stage
+     Setting this determines the "stage" of the calculation.  Normally,
+     `stage = 0' which begins with a new uniform grid and empty weighted
+     average.  Calling VEGAS with `stage = 1' retains the grid from the
+     previous run but discards the weighted average, so that one can
+     "tune" the grid using a relatively small number of points and then
+     do a large run with `stage = 1' on the optimized grid.  Setting
+     `stage = 2' keeps the grid and the weighted average from the
+     previous run, but may increase (or decrease) the number of
+     histogram bins in the grid depending on the number of calls
+     available.  Choosing `stage = 3' enters at the main loop, so that
+     nothing is changed, and is equivalent to performing additional
+     iterations in a previous call.
+
+ -- Variable: int mode
+     The possible choices are `GSL_VEGAS_MODE_IMPORTANCE',
+     `GSL_VEGAS_MODE_STRATIFIED', `GSL_VEGAS_MODE_IMPORTANCE_ONLY'.
+     This determines whether VEGAS will use importance sampling or
+     stratified sampling, or whether it can pick on its own.  In low
+     dimensions VEGAS uses strict stratified sampling (more precisely,
+     stratified sampling is chosen if there are fewer than 2 bins per
+     box).
+
+ -- Variable: int verbose
+ -- Variable: FILE * ostream
+     These parameters set the level of information printed by VEGAS. All
+     information is written to the stream OSTREAM.  The default setting
+     of VERBOSE is `-1', which turns off all output.  A VERBOSE value
+     of `0' prints summary information about the weighted average and
+     final result, while a value of `1' also displays the grid
+     coordinates.  A value of `2' prints information from the rebinning
+     procedure for each iteration.
+
+   The above fields and the CHISQ value can also be accessed directly
+in the `gsl_monte_vegas_state' but such use is deprecated.
+
+\1f
+File: gsl-ref.info,  Node: Monte Carlo Examples,  Next: Monte Carlo Integration References and Further Reading,  Prev: VEGAS,  Up: Monte Carlo Integration
+
+24.5 Examples
+=============
+
+The example program below uses the Monte Carlo routines to estimate the
+value of the following 3-dimensional integral from the theory of random
+walks,
+
+     I = \int_{-pi}^{+pi} {dk_x/(2 pi)}
+         \int_{-pi}^{+pi} {dk_y/(2 pi)}
+         \int_{-pi}^{+pi} {dk_z/(2 pi)}
+          1 / (1 - cos(k_x)cos(k_y)cos(k_z)).
+
+The analytic value of this integral can be shown to be I =
+\Gamma(1/4)^4/(4 \pi^3) = 1.393203929685676859....  The integral gives
+the mean time spent at the origin by a random walk on a body-centered
+cubic lattice in three dimensions.
+
+   For simplicity we will compute the integral over the region (0,0,0)
+to (\pi,\pi,\pi) and multiply by 8 to obtain the full result.  The
+integral is slowly varying in the middle of the region but has
+integrable singularities at the corners (0,0,0), (0,\pi,\pi),
+(\pi,0,\pi) and (\pi,\pi,0).  The Monte Carlo routines only select
+points which are strictly within the integration region and so no
+special measures are needed to avoid these singularities.
+
+     #include <stdlib.h>
+     #include <gsl/gsl_math.h>
+     #include <gsl/gsl_monte.h>
+     #include <gsl/gsl_monte_plain.h>
+     #include <gsl/gsl_monte_miser.h>
+     #include <gsl/gsl_monte_vegas.h>
+
+     /* Computation of the integral,
+
+           I = int (dx dy dz)/(2pi)^3  1/(1-cos(x)cos(y)cos(z))
+
+        over (-pi,-pi,-pi) to (+pi, +pi, +pi).  The exact answer
+        is Gamma(1/4)^4/(4 pi^3).  This example is taken from
+        C.Itzykson, J.M.Drouffe, "Statistical Field Theory -
+        Volume 1", Section 1.1, p21, which cites the original
+        paper M.L.Glasser, I.J.Zucker, Proc.Natl.Acad.Sci.USA 74
+        1800 (1977) */
+
+     /* For simplicity we compute the integral over the region
+        (0,0,0) -> (pi,pi,pi) and multiply by 8 */
+
+     double exact = 1.3932039296856768591842462603255;
+
+     double
+     g (double *k, size_t dim, void *params)
+     {
+       double A = 1.0 / (M_PI * M_PI * M_PI);
+       return A / (1.0 - cos (k[0]) * cos (k[1]) * cos (k[2]));
+     }
+
+     void
+     display_results (char *title, double result, double error)
+     {
+       printf ("%s ==================\n", title);
+       printf ("result = % .6f\n", result);
+       printf ("sigma  = % .6f\n", error);
+       printf ("exact  = % .6f\n", exact);
+       printf ("error  = % .6f = %.2g sigma\n", result - exact,
+               fabs (result - exact) / error);
+     }
+
+     int
+     main (void)
+     {
+       double res, err;
+
+       double xl[3] = { 0, 0, 0 };
+       double xu[3] = { M_PI, M_PI, M_PI };
+
+       const gsl_rng_type *T;
+       gsl_rng *r;
+
+       gsl_monte_function G = { &g, 3, 0 };
+
+       size_t calls = 500000;
+
+       gsl_rng_env_setup ();
+
+       T = gsl_rng_default;
+       r = gsl_rng_alloc (T);
+
+       {
+         gsl_monte_plain_state *s = gsl_monte_plain_alloc (3);
+         gsl_monte_plain_integrate (&G, xl, xu, 3, calls, r, s,
+                                    &res, &err);
+         gsl_monte_plain_free (s);
+
+         display_results ("plain", res, err);
+       }
+
+       {
+         gsl_monte_miser_state *s = gsl_monte_miser_alloc (3);
+         gsl_monte_miser_integrate (&G, xl, xu, 3, calls, r, s,
+                                    &res, &err);
+         gsl_monte_miser_free (s);
+
+         display_results ("miser", res, err);
+       }
+
+       {
+         gsl_monte_vegas_state *s = gsl_monte_vegas_alloc (3);
+
+         gsl_monte_vegas_integrate (&G, xl, xu, 3, 10000, r, s,
+                                    &res, &err);
+         display_results ("vegas warm-up", res, err);
+
+         printf ("converging...\n");
+
+         do
+           {
+             gsl_monte_vegas_integrate (&G, xl, xu, 3, calls/5, r, s,
+                                        &res, &err);
+             printf ("result = % .6f sigma = % .6f "
+                     "chisq/dof = %.1f\n", res, err, gsl_monte_vegas_chisq (s));
+           }
+         while (fabs (gsl_monte_vegas_chisq (s) - 1.0) > 0.5);
+
+         display_results ("vegas final", res, err);
+
+         gsl_monte_vegas_free (s);
+       }
+
+       gsl_rng_free (r);
+
+       return 0;
+     }
+
+With 500,000 function calls the plain Monte Carlo algorithm achieves a
+fractional error of 1%.  The estimated error `sigma' is roughly
+consistent with the actual error-the computed result differs from the
+true result by about 1.4 standard deviations,
+
+     plain ==================
+     result =  1.412209
+     sigma  =  0.013436
+     exact  =  1.393204
+     error  =  0.019005 = 1.4 sigma
+
+The MISER algorithm reduces the error by a factor of four, and also
+correctly estimates the error,
+
+     miser ==================
+     result =  1.391322
+     sigma  =  0.003461
+     exact  =  1.393204
+     error  = -0.001882 = 0.54 sigma
+
+In the case of the VEGAS algorithm the program uses an initial warm-up
+run of 10,000 function calls to prepare, or "warm up", the grid.  This
+is followed by a main run with five iterations of 100,000 function
+calls. The chi-squared per degree of freedom for the five iterations are
+checked for consistency with 1, and the run is repeated if the results
+have not converged. In this case the estimates are consistent on the
+first pass.
+
+     vegas warm-up ==================
+     result =  1.392673
+     sigma  =  0.003410
+     exact  =  1.393204
+     error  = -0.000531 = 0.16 sigma
+     converging...
+     result =  1.393281 sigma =  0.000362 chisq/dof = 1.5
+     vegas final ==================
+     result =  1.393281
+     sigma  =  0.000362
+     exact  =  1.393204
+     error  =  0.000077 = 0.21 sigma
+
+If the value of `chisq' had differed significantly from 1 it would
+indicate inconsistent results, with a correspondingly underestimated
+error.  The final estimate from VEGAS (using a similar number of
+function calls) is significantly more accurate than the other two
+algorithms.
+
+\1f
+File: gsl-ref.info,  Node: Monte Carlo Integration References and Further Reading,  Prev: Monte Carlo Examples,  Up: Monte Carlo Integration
+
+24.6 References and Further Reading
+===================================
+
+The MISER algorithm is described in the following article by Press and
+Farrar,
+
+     W.H. Press, G.R. Farrar, `Recursive Stratified Sampling for
+     Multidimensional Monte Carlo Integration', Computers in Physics,
+     v4 (1990), pp190-195.
+
+The VEGAS algorithm is described in the following papers,
+
+     G.P. Lepage, `A New Algorithm for Adaptive Multidimensional
+     Integration', Journal of Computational Physics 27, 192-203, (1978)
+
+     G.P. Lepage, `VEGAS: An Adaptive Multi-dimensional Integration
+     Program', Cornell preprint CLNS 80-447, March 1980
+
+\1f
+File: gsl-ref.info,  Node: Simulated Annealing,  Next: Ordinary Differential Equations,  Prev: Monte Carlo Integration,  Up: Top
+
+25 Simulated Annealing
+**********************
+
+Stochastic search techniques are used when the structure of a space is
+not well understood or is not smooth, so that techniques like Newton's
+method (which requires calculating Jacobian derivative matrices) cannot
+be used. In particular, these techniques are frequently used to solve
+combinatorial optimization problems, such as the traveling salesman
+problem.
+
+   The goal is to find a point in the space at which a real valued
+"energy function" (or "cost function") is minimized.  Simulated
+annealing is a minimization technique which has given good results in
+avoiding local minima; it is based on the idea of taking a random walk
+through the space at successively lower temperatures, where the
+probability of taking a step is given by a Boltzmann distribution.
+
+   The functions described in this chapter are declared in the header
+file `gsl_siman.h'.
+
+* Menu:
+
+* Simulated Annealing algorithm::
+* Simulated Annealing functions::
+* Examples with Simulated Annealing::
+* Simulated Annealing References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Simulated Annealing algorithm,  Next: Simulated Annealing functions,  Up: Simulated Annealing
+
+25.1 Simulated Annealing algorithm
+==================================
+
+The simulated annealing algorithm takes random walks through the problem
+space, looking for points with low energies; in these random walks, the
+probability of taking a step is determined by the Boltzmann
+distribution,
+
+     p = e^{-(E_{i+1} - E_i)/(kT)}
+
+if E_{i+1} > E_i, and p = 1 when E_{i+1} <= E_i.
+
+   In other words, a step will occur if the new energy is lower.  If
+the new energy is higher, the transition can still occur, and its
+likelihood is proportional to the temperature T and inversely
+proportional to the energy difference E_{i+1} - E_i.
+
+   The temperature T is initially set to a high value, and a random
+walk is carried out at that temperature.  Then the temperature is
+lowered very slightly according to a "cooling schedule", for example: T
+-> T/mu_T where \mu_T is slightly greater than 1.  
+
+   The slight probability of taking a step that gives higher energy is
+what allows simulated annealing to frequently get out of local minima.
+
+\1f
+File: gsl-ref.info,  Node: Simulated Annealing functions,  Next: Examples with Simulated Annealing,  Prev: Simulated Annealing algorithm,  Up: Simulated Annealing
+
+25.2 Simulated Annealing functions
+==================================
+
+ -- Function: void gsl_siman_solve (const gsl_rng * R, void * X0_P,
+          gsl_siman_Efunc_t EF, gsl_siman_step_t TAKE_STEP,
+          gsl_siman_metric_t DISTANCE, gsl_siman_print_t
+          PRINT_POSITION, gsl_siman_copy_t COPYFUNC,
+          gsl_siman_copy_construct_t COPY_CONSTRUCTOR,
+          gsl_siman_destroy_t DESTRUCTOR, size_t ELEMENT_SIZE,
+          gsl_siman_params_t PARAMS)
+     This function performs a simulated annealing search through a given
+     space.  The space is specified by providing the functions EF and
+     DISTANCE.  The simulated annealing steps are generated using the
+     random number generator R and the function TAKE_STEP.
+
+     The starting configuration of the system should be given by X0_P.
+     The routine offers two modes for updating configurations, a
+     fixed-size mode and a variable-size mode.  In the fixed-size mode
+     the configuration is stored as a single block of memory of size
+     ELEMENT_SIZE.  Copies of this configuration are created, copied
+     and destroyed internally using the standard library functions
+     `malloc', `memcpy' and `free'.  The function pointers COPYFUNC,
+     COPY_CONSTRUCTOR and DESTRUCTOR should be null pointers in
+     fixed-size mode.  In the variable-size mode the functions
+     COPYFUNC, COPY_CONSTRUCTOR and DESTRUCTOR are used to create, copy
+     and destroy configurations internally.  The variable ELEMENT_SIZE
+     should be zero in the variable-size mode.
+
+     The PARAMS structure (described below) controls the run by
+     providing the temperature schedule and other tunable parameters to
+     the algorithm.
+
+     On exit the best result achieved during the search is placed in
+     `*X0_P'.  If the annealing process has been successful this should
+     be a good approximation to the optimal point in the space.
+
+     If the function pointer PRINT_POSITION is not null, a debugging
+     log will be printed to `stdout' with the following columns:
+
+          #-iter  #-evals  temperature  position  energy  best_energy
+
+     and the output of the function PRINT_POSITION itself.  If
+     PRINT_POSITION is null then no information is printed.
+
+The simulated annealing routines require several user-specified
+functions to define the configuration space and energy function.  The
+prototypes for these functions are given below.
+
+ -- Data Type: gsl_siman_Efunc_t
+     This function type should return the energy of a configuration XP.
+
+          double (*gsl_siman_Efunc_t) (void *xp)
+
+ -- Data Type: gsl_siman_step_t
+     This function type should modify the configuration XP using a
+     random step taken from the generator R, up to a maximum distance of
+     STEP_SIZE.
+
+          void (*gsl_siman_step_t) (const gsl_rng *r, void *xp,
+                                    double step_size)
+
+ -- Data Type: gsl_siman_metric_t
+     This function type should return the distance between two
+     configurations XP and YP.
+
+          double (*gsl_siman_metric_t) (void *xp, void *yp)
+
+ -- Data Type: gsl_siman_print_t
+     This function type should print the contents of the configuration
+     XP.
+
+          void (*gsl_siman_print_t) (void *xp)
+
+ -- Data Type: gsl_siman_copy_t
+     This function type should copy the configuration SOURCE into DEST.
+
+          void (*gsl_siman_copy_t) (void *source, void *dest)
+
+ -- Data Type: gsl_siman_copy_construct_t
+     This function type should create a new copy of the configuration
+     XP.
+
+          void * (*gsl_siman_copy_construct_t) (void *xp)
+
+ -- Data Type: gsl_siman_destroy_t
+     This function type should destroy the configuration XP, freeing its
+     memory.
+
+          void (*gsl_siman_destroy_t) (void *xp)
+
+ -- Data Type: gsl_siman_params_t
+     These are the parameters that control a run of `gsl_siman_solve'.
+     This structure contains all the information needed to control the
+     search, beyond the energy function, the step function and the
+     initial guess.
+
+    `int n_tries'
+          The number of points to try for each step.
+
+    `int iters_fixed_T'
+          The number of iterations at each temperature.
+
+    `double step_size'
+          The maximum step size in the random walk.
+
+    `double k, t_initial, mu_t, t_min'
+          The parameters of the Boltzmann distribution and cooling
+          schedule.
+
+\1f
+File: gsl-ref.info,  Node: Examples with Simulated Annealing,  Next: Simulated Annealing References and Further Reading,  Prev: Simulated Annealing functions,  Up: Simulated Annealing
+
+25.3 Examples
+=============
+
+The simulated annealing package is clumsy, and it has to be because it
+is written in C, for C callers, and tries to be polymorphic at the same
+time.  But here we provide some examples which can be pasted into your
+application with little change and should make things easier.
+
+* Menu:
+
+* Trivial example::
+* Traveling Salesman Problem::
+
+\1f
+File: gsl-ref.info,  Node: Trivial example,  Next: Traveling Salesman Problem,  Up: Examples with Simulated Annealing
+
+25.3.1 Trivial example
+----------------------
+
+The first example, in one dimensional Cartesian space, sets up an energy
+function which is a damped sine wave; this has many local minima, but
+only one global minimum, somewhere between 1.0 and 1.5.  The initial
+guess given is 15.5, which is several local minima away from the global
+minimum.
+
+     #include <math.h>
+     #include <stdlib.h>
+     #include <string.h>
+     #include <gsl/gsl_siman.h>
+
+     /* set up parameters for this simulated annealing run */
+
+     /* how many points do we try before stepping */
+     #define N_TRIES 200
+
+     /* how many iterations for each T? */
+     #define ITERS_FIXED_T 1000
+
+     /* max step size in random walk */
+     #define STEP_SIZE 1.0
+
+     /* Boltzmann constant */
+     #define K 1.0
+
+     /* initial temperature */
+     #define T_INITIAL 0.008
+
+     /* damping factor for temperature */
+     #define MU_T 1.003
+     #define T_MIN 2.0e-6
+
+     gsl_siman_params_t params
+       = {N_TRIES, ITERS_FIXED_T, STEP_SIZE,
+          K, T_INITIAL, MU_T, T_MIN};
+
+     /* now some functions to test in one dimension */
+     double E1(void *xp)
+     {
+       double x = * ((double *) xp);
+
+       return exp(-pow((x-1.0),2.0))*sin(8*x);
+     }
+
+     double M1(void *xp, void *yp)
+     {
+       double x = *((double *) xp);
+       double y = *((double *) yp);
+
+       return fabs(x - y);
+     }
+
+     void S1(const gsl_rng * r, void *xp, double step_size)
+     {
+       double old_x = *((double *) xp);
+       double new_x;
+
+       double u = gsl_rng_uniform(r);
+       new_x = u * 2 * step_size - step_size + old_x;
+
+       memcpy(xp, &new_x, sizeof(new_x));
+     }
+
+     void P1(void *xp)
+     {
+       printf ("%12g", *((double *) xp));
+     }
+
+     int
+     main(int argc, char *argv[])
+     {
+       const gsl_rng_type * T;
+       gsl_rng * r;
+
+       double x_initial = 15.5;
+
+       gsl_rng_env_setup();
+
+       T = gsl_rng_default;
+       r = gsl_rng_alloc(T);
+
+       gsl_siman_solve(r, &x_initial, E1, S1, M1, P1,
+                       NULL, NULL, NULL,
+                       sizeof(double), params);
+
+       gsl_rng_free (r);
+       return 0;
+     }
+
+   Here are a couple of plots that are generated by running
+`siman_test' in the following way:
+
+     $ ./siman_test | awk '!/^#/ {print $1, $4}'
+      | graph -y 1.34 1.4 -W0 -X generation -Y position
+      | plot -Tps > siman-test.eps
+     $ ./siman_test | awk '!/^#/ {print $1, $5}'
+      | graph -y -0.88 -0.83 -W0 -X generation -Y energy
+      | plot -Tps > siman-energy.eps
+
+\1f
+File: gsl-ref.info,  Node: Traveling Salesman Problem,  Prev: Trivial example,  Up: Examples with Simulated Annealing
+
+25.3.2 Traveling Salesman Problem
+---------------------------------
+
+The TSP ("Traveling Salesman Problem") is the classic combinatorial
+optimization problem.  I have provided a very simple version of it,
+based on the coordinates of twelve cities in the southwestern United
+States.  This should maybe be called the "Flying Salesman Problem",
+since I am using the great-circle distance between cities, rather than
+the driving distance.  Also: I assume the earth is a sphere, so I don't
+use geoid distances.
+
+   The `gsl_siman_solve' routine finds a route which is 3490.62
+Kilometers long; this is confirmed by an exhaustive search of all
+possible routes with the same initial city.
+
+   The full code can be found in `siman/siman_tsp.c', but I include
+here some plots generated in the following way:
+
+     $ ./siman_tsp > tsp.output
+     $ grep -v "^#" tsp.output
+      | awk '{print $1, $NF}'
+      | graph -y 3300 6500 -W0 -X generation -Y distance
+         -L "TSP - 12 southwest cities"
+      | plot -Tps > 12-cities.eps
+     $ grep initial_city_coord tsp.output
+       | awk '{print $2, $3}'
+       | graph -X "longitude (- means west)" -Y "latitude"
+          -L "TSP - initial-order" -f 0.03 -S 1 0.1
+       | plot -Tps > initial-route.eps
+     $ grep final_city_coord tsp.output
+       | awk '{print $2, $3}'
+       | graph -X "longitude (- means west)" -Y "latitude"
+          -L "TSP - final-order" -f 0.03 -S 1 0.1
+       | plot -Tps > final-route.eps
+
+This is the output showing the initial order of the cities; longitude is
+negative, since it is west and I want the plot to look like a map.
+
+     # initial coordinates of cities (longitude and latitude)
+     ###initial_city_coord: -105.95 35.68 Santa Fe
+     ###initial_city_coord: -112.07 33.54 Phoenix
+     ###initial_city_coord: -106.62 35.12 Albuquerque
+     ###initial_city_coord: -103.2 34.41 Clovis
+     ###initial_city_coord: -107.87 37.29 Durango
+     ###initial_city_coord: -96.77 32.79 Dallas
+     ###initial_city_coord: -105.92 35.77 Tesuque
+     ###initial_city_coord: -107.84 35.15 Grants
+     ###initial_city_coord: -106.28 35.89 Los Alamos
+     ###initial_city_coord: -106.76 32.34 Las Cruces
+     ###initial_city_coord: -108.58 37.35 Cortez
+     ###initial_city_coord: -108.74 35.52 Gallup
+     ###initial_city_coord: -105.95 35.68 Santa Fe
+
+   The optimal route turns out to be:
+
+     # final coordinates of cities (longitude and latitude)
+     ###final_city_coord: -105.95 35.68 Santa Fe
+     ###final_city_coord: -103.2 34.41 Clovis
+     ###final_city_coord: -96.77 32.79 Dallas
+     ###final_city_coord: -106.76 32.34 Las Cruces
+     ###final_city_coord: -112.07 33.54 Phoenix
+     ###final_city_coord: -108.74 35.52 Gallup
+     ###final_city_coord: -108.58 37.35 Cortez
+     ###final_city_coord: -107.87 37.29 Durango
+     ###final_city_coord: -107.84 35.15 Grants
+     ###final_city_coord: -106.62 35.12 Albuquerque
+     ###final_city_coord: -106.28 35.89 Los Alamos
+     ###final_city_coord: -105.92 35.77 Tesuque
+     ###final_city_coord: -105.95 35.68 Santa Fe
+
+Here's a plot of the cost function (energy) versus generation (point in
+the calculation at which a new temperature is set) for this problem:
+
+\1f
+File: gsl-ref.info,  Node: Simulated Annealing References and Further Reading,  Prev: Examples with Simulated Annealing,  Up: Simulated Annealing
+
+25.4 References and Further Reading
+===================================
+
+Further information is available in the following book,
+
+     `Modern Heuristic Techniques for Combinatorial Problems', Colin R.
+     Reeves (ed.), McGraw-Hill, 1995 (ISBN 0-07-709239-2).
+
+\1f
+File: gsl-ref.info,  Node: Ordinary Differential Equations,  Next: Interpolation,  Prev: Simulated Annealing,  Up: Top
+
+26 Ordinary Differential Equations
+**********************************
+
+This chapter describes functions for solving ordinary differential
+equation (ODE) initial value problems.  The library provides a variety
+of low-level methods, such as Runge-Kutta and Bulirsch-Stoer routines,
+and higher-level components for adaptive step-size control. The
+components can be combined by the user to achieve the desired solution,
+with full access to any intermediate steps. A driver object can be used
+as a high level wrapper for easy use of low level functions.
+
+   These functions are declared in the header file `gsl_odeiv2.h'.
+This is a new interface in version 1.15 and uses the prefix
+`gsl_odeiv2' for all functions.  It is recommended over the previous
+`gsl_odeiv' implementation defined in `gsl_odeiv.h' The old interface
+has been retained under the original name for backwards compatibility.
+
+* Menu:
+
+* Defining the ODE System::
+* Stepping Functions::
+* Adaptive Step-size Control::
+* Evolution::
+* Driver::
+* ODE Example programs::
+* ODE References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Defining the ODE System,  Next: Stepping Functions,  Up: Ordinary Differential Equations
+
+26.1 Defining the ODE System
+============================
+
+The routines solve the general n-dimensional first-order system,
+
+     dy_i(t)/dt = f_i(t, y_1(t), ..., y_n(t))
+
+for i = 1, \dots, n.  The stepping functions rely on the vector of
+derivatives f_i and the Jacobian matrix, J_{ij} = df_i(t,y(t)) / dy_j.
+A system of equations is defined using the `gsl_odeiv2_system' datatype.
+
+ -- Data Type: gsl_odeiv2_system
+     This data type defines a general ODE system with arbitrary
+     parameters.
+
+    `int (* function) (double t, const double y[], double dydt[], void * params)'
+          This function should store the vector elements
+          f_i(t,y,params) in the array DYDT, for arguments (T,Y) and
+          parameters PARAMS.
+
+          The function should return `GSL_SUCCESS' if the calculation
+          was completed successfully. Any other return value indicates
+          an error. A special return value `GSL_EBADFUNC' causes
+          `gsl_odeiv2' routines to immediately stop and return. The
+          user must call an appropriate reset function (e.g.
+          `gsl_odeiv2_driver_reset' or `gsl_odeiv2_step_reset') before
+          continuing. Use return values distinct from standard GSL
+          error codes to distinguish your function as the source of the
+          error.
+
+    `int (* jacobian) (double t, const double y[], double * dfdy, double dfdt[], void * params);'
+          This function should store the vector of derivative elements
+          in the array DFDT and the Jacobian matrix J_{ij} in the array
+          DFDY, regarded as a row-ordered matrix `J(i,j) = dfdy[i *
+          dimension + j]' where `dimension' is the dimension of the
+          system.
+
+          Not all of the stepper algorithms of `gsl_odeiv2' make use of
+          the Jacobian matrix, so it may not be necessary to provide
+          this function (the `jacobian' element of the struct can be
+          replaced by a null pointer for those algorithms).
+
+          The function should return `GSL_SUCCESS' if the calculation
+          was completed successfully. Any other return value indicates
+          an error. A special return value `GSL_EBADFUNC' causes
+          `gsl_odeiv2' routines to immediately stop and return. The
+          user must call an appropriate reset function (e.g.
+          `gsl_odeiv2_driver_reset' or `gsl_odeiv2_step_reset') before
+          continuing. Use return values distinct from standard GSL
+          error codes to distinguish your function as the source of the
+          error.
+
+    `size_t dimension;'
+          This is the dimension of the system of equations.
+
+    `void * params'
+          This is a pointer to the arbitrary parameters of the system.
+
+\1f
+File: gsl-ref.info,  Node: Stepping Functions,  Next: Adaptive Step-size Control,  Prev: Defining the ODE System,  Up: Ordinary Differential Equations
+
+26.2 Stepping Functions
+=======================
+
+The lowest level components are the "stepping functions" which advance
+a solution from time t to t+h for a fixed step-size h and estimate the
+resulting local error.
+
+ -- Function: gsl_odeiv2_step * gsl_odeiv2_step_alloc (const
+          gsl_odeiv2_step_type * T, size_t DIM)
+     This function returns a pointer to a newly allocated instance of a
+     stepping function of type T for a system of DIM dimensions. Please
+     note that if you use a stepper method that requires access to a
+     driver object, it is advisable to use a driver allocation method,
+     which automatically allocates a stepper, too.
+
+ -- Function: int gsl_odeiv2_step_reset (gsl_odeiv2_step * S)
+     This function resets the stepping function S.  It should be used
+     whenever the next use of S will not be a continuation of a
+     previous step.
+
+ -- Function: void gsl_odeiv2_step_free (gsl_odeiv2_step * S)
+     This function frees all the memory associated with the stepping
+     function S.
+
+ -- Function: const char * gsl_odeiv2_step_name (const gsl_odeiv2_step
+          * S)
+     This function returns a pointer to the name of the stepping
+     function.  For example,
+
+          printf ("step method is '%s'\n",
+                   gsl_odeiv2_step_name (s));
+
+     would print something like `step method is 'rkf45''.
+
+ -- Function: unsigned int gsl_odeiv2_step_order (const gsl_odeiv2_step
+          * S)
+     This function returns the order of the stepping function on the
+     previous step. The order can vary if the stepping function itself
+     is adaptive.
+
+ -- Function: int gsl_odeiv2_step_set_driver (gsl_odeiv2_step * S,
+          const gsl_odeiv2_driver * D)
+     This function sets a pointer of the driver object D for stepper S,
+     to allow the stepper to access control (and evolve) object through
+     the driver object. This is a requirement for some steppers, to get
+     the desired error level for internal iteration of stepper.
+     Allocation of a driver object calls this function automatically.
+
+ -- Function: int gsl_odeiv2_step_apply (gsl_odeiv2_step * S, double T,
+          double H, double Y[], double YERR[], const double DYDT_IN[],
+          double DYDT_OUT[], const gsl_odeiv2_system * SYS)
+     This function applies the stepping function S to the system of
+     equations defined by SYS, using the step-size H to advance the
+     system from time T and state Y to time T+H.  The new state of the
+     system is stored in Y on output, with an estimate of the absolute
+     error in each component stored in YERR.  If the argument DYDT_IN
+     is not null it should point an array containing the derivatives
+     for the system at time T on input. This is optional as the
+     derivatives will be computed internally if they are not provided,
+     but allows the reuse of existing derivative information.  On
+     output the new derivatives of the system at time T+H will be
+     stored in DYDT_OUT if it is not null.
+
+     The stepping function returns `GSL_FAILURE' if it is unable to
+     compute the requested step. Also, if the user-supplied functions
+     defined in the system SYS return a status other than `GSL_SUCCESS'
+     the step will be aborted. In that case, the elements of Y will be
+     restored to their pre-step values and the error code from the
+     user-supplied function will be returned. Failure may be due to a
+     singularity in the system or too large step-size H. In that case
+     the step should be attempted again with a smaller step-size, e.g.
+     H/2.
+
+     If the driver object is not appropriately set via
+     `gsl_odeiv2_step_set_driver' for those steppers that need it, the
+     stepping function returns `GSL_EFAULT'. If the user-supplied
+     functions defined in the system SYS returns `GSL_EBADFUNC', the
+     function returns immediately with the same return code. In this
+     case the user must call `gsl_odeiv2_step_reset' before calling
+     this function again.
+
+
+   The following algorithms are available,
+
+ -- Step Type: gsl_odeiv2_step_rk2
+     Explicit embedded Runge-Kutta (2, 3) method.
+
+ -- Step Type: gsl_odeiv2_step_rk4
+     Explicit 4th order (classical) Runge-Kutta. Error estimation is
+     carried out by the step doubling method. For more efficient
+     estimate of the error, use the embedded methods described below.
+
+ -- Step Type: gsl_odeiv2_step_rkf45
+     Explicit embedded Runge-Kutta-Fehlberg (4, 5) method.  This method
+     is a good general-purpose integrator.
+
+ -- Step Type: gsl_odeiv2_step_rkck
+     Explicit embedded Runge-Kutta Cash-Karp (4, 5) method.
+
+ -- Step Type: gsl_odeiv2_step_rk8pd
+     Explicit embedded Runge-Kutta Prince-Dormand (8, 9) method.
+
+ -- Step Type: gsl_odeiv2_step_rk1imp
+     Implicit Gaussian first order Runge-Kutta. Also known as implicit
+     Euler or backward Euler method. Error estimation is carried out by
+     the step doubling method. This algorithm requires the Jacobian and
+     access to the driver object via `gsl_odeiv2_step_set_driver'.
+
+ -- Step Type: gsl_odeiv2_step_rk2imp
+     Implicit Gaussian second order Runge-Kutta. Also known as implicit
+     mid-point rule. Error estimation is carried out by the step
+     doubling method. This stepper requires the Jacobian and access to
+     the driver object via `gsl_odeiv2_step_set_driver'.
+
+ -- Step Type: gsl_odeiv2_step_rk4imp
+     Implicit Gaussian 4th order Runge-Kutta. Error estimation is
+     carried out by the step doubling method. This algorithm requires
+     the Jacobian and access to the driver object via
+     `gsl_odeiv2_step_set_driver'.
+
+ -- Step Type: gsl_odeiv2_step_bsimp
+     Implicit Bulirsch-Stoer method of Bader and Deuflhard. The method
+     is generally suitable for stiff problems. This stepper requires the
+     Jacobian.
+
+ -- Step Type: gsl_odeiv2_step_msadams
+     A variable-coefficient linear multistep Adams method in Nordsieck
+     form. This stepper uses explicit Adams-Bashforth (predictor) and
+     implicit Adams-Moulton (corrector) methods in P(EC)^m functional
+     iteration mode. Method order varies dynamically between 1 and 12.
+     This stepper requires the access to the driver object via
+     `gsl_odeiv2_step_set_driver'.
+
+ -- Step Type: gsl_odeiv2_step_msbdf
+     A variable-coefficient linear multistep backward differentiation
+     formula (BDF) method in Nordsieck form. This stepper uses the
+     explicit BDF formula as predictor and implicit BDF formula as
+     corrector. A modified Newton iteration method is used to solve the
+     system of non-linear equations. Method order varies dynamically
+     between 1 and 5. The method is generally suitable for stiff
+     problems. This stepper requires the Jacobian and the access to the
+     driver object via `gsl_odeiv2_step_set_driver'.
+
+\1f
+File: gsl-ref.info,  Node: Adaptive Step-size Control,  Next: Evolution,  Prev: Stepping Functions,  Up: Ordinary Differential Equations
+
+26.3 Adaptive Step-size Control
+===============================
+
+The control function examines the proposed change to the solution
+produced by a stepping function and attempts to determine the optimal
+step-size for a user-specified level of error.
+
+ -- Function: gsl_odeiv2_control * gsl_odeiv2_control_standard_new
+          (double EPS_ABS, double EPS_REL, double A_Y, double A_DYDT)
+     The standard control object is a four parameter heuristic based on
+     absolute and relative errors EPS_ABS and EPS_REL, and scaling
+     factors A_Y and A_DYDT for the system state y(t) and derivatives
+     y'(t) respectively.
+
+     The step-size adjustment procedure for this method begins by
+     computing the desired error level D_i for each component,
+
+          D_i = eps_abs + eps_rel * (a_y |y_i| + a_dydt h |y\prime_i|)
+
+     and comparing it with the observed error E_i = |yerr_i|.  If the
+     observed error E exceeds the desired error level D by more than
+     10% for any component then the method reduces the step-size by an
+     appropriate factor,
+
+          h_new = h_old * S * (E/D)^(-1/q)
+
+     where q is the consistency order of the method (e.g. q=4 for 4(5)
+     embedded RK), and S is a safety factor of 0.9. The ratio E/D is
+     taken to be the maximum of the ratios E_i/D_i.
+
+     If the observed error E is less than 50% of the desired error
+     level D for the maximum ratio E_i/D_i then the algorithm takes the
+     opportunity to increase the step-size to bring the error in line
+     with the desired level,
+
+          h_new = h_old * S * (E/D)^(-1/(q+1))
+
+     This encompasses all the standard error scaling methods. To avoid
+     uncontrolled changes in the stepsize, the overall scaling factor is
+     limited to the range 1/5 to 5.
+
+ -- Function: gsl_odeiv2_control * gsl_odeiv2_control_y_new (double
+          EPS_ABS, double EPS_REL)
+     This function creates a new control object which will keep the
+     local error on each step within an absolute error of EPS_ABS and
+     relative error of EPS_REL with respect to the solution y_i(t).
+     This is equivalent to the standard control object with A_Y=1 and
+     A_DYDT=0.
+
+ -- Function: gsl_odeiv2_control * gsl_odeiv2_control_yp_new (double
+          EPS_ABS, double EPS_REL)
+     This function creates a new control object which will keep the
+     local error on each step within an absolute error of EPS_ABS and
+     relative error of EPS_REL with respect to the derivatives of the
+     solution y'_i(t).  This is equivalent to the standard control
+     object with A_Y=0 and A_DYDT=1.
+
+ -- Function: gsl_odeiv2_control * gsl_odeiv2_control_scaled_new
+          (double EPS_ABS, double EPS_REL, double A_Y, double A_DYDT,
+          const double SCALE_ABS[], size_t DIM)
+     This function creates a new control object which uses the same
+     algorithm as `gsl_odeiv2_control_standard_new' but with an
+     absolute error which is scaled for each component by the array
+     SCALE_ABS.  The formula for D_i for this control object is,
+
+          D_i = eps_abs * s_i + eps_rel * (a_y |y_i| + a_dydt h |y\prime_i|)
+
+     where s_i is the i-th component of the array SCALE_ABS.  The same
+     error control heuristic is used by the Matlab ODE suite.
+
+ -- Function: gsl_odeiv2_control * gsl_odeiv2_control_alloc (const
+          gsl_odeiv2_control_type * T)
+     This function returns a pointer to a newly allocated instance of a
+     control function of type T.  This function is only needed for
+     defining new types of control functions.  For most purposes the
+     standard control functions described above should be sufficient.
+
+ -- Function: int gsl_odeiv2_control_init (gsl_odeiv2_control * C,
+          double EPS_ABS, double EPS_REL, double A_Y, double A_DYDT)
+     This function initializes the control function C with the
+     parameters EPS_ABS (absolute error), EPS_REL (relative error), A_Y
+     (scaling factor for y) and A_DYDT (scaling factor for derivatives).
+
+ -- Function: void gsl_odeiv2_control_free (gsl_odeiv2_control * C)
+     This function frees all the memory associated with the control
+     function C.
+
+ -- Function: int gsl_odeiv2_control_hadjust (gsl_odeiv2_control * C,
+          gsl_odeiv2_step * S, const double Y[], const double YERR[],
+          const double DYDT[], double * H)
+     This function adjusts the step-size H using the control function
+     C, and the current values of Y, YERR and DYDT.  The stepping
+     function STEP is also needed to determine the order of the method.
+     If the error in the y-values YERR is found to be too large then
+     the step-size H is reduced and the function returns
+     `GSL_ODEIV_HADJ_DEC'.  If the error is sufficiently small then H
+     may be increased and `GSL_ODEIV_HADJ_INC' is returned.  The
+     function returns `GSL_ODEIV_HADJ_NIL' if the step-size is
+     unchanged.  The goal of the function is to estimate the largest
+     step-size which satisfies the user-specified accuracy requirements
+     for the current point.
+
+ -- Function: const char * gsl_odeiv2_control_name (const
+          gsl_odeiv2_control * C)
+     This function returns a pointer to the name of the control
+     function.  For example,
+
+          printf ("control method is '%s'\n",
+                  gsl_odeiv2_control_name (c));
+
+     would print something like `control method is 'standard''
+
+ -- Function: int gsl_odeiv2_control_errlevel (gsl_odeiv2_control * C,
+          const double Y, const double DYDT, const double H, const
+          size_t IND, double * ERRLEV)
+     This function calculates the desired error level of the INDth
+     component to ERRLEV. It requires the value (Y) and value of the
+     derivative (DYDT) of the component, and the current step size H.
+
+ -- Function: int gsl_odeiv2_control_set_driver (gsl_odeiv2_control *
+          C, const gsl_odeiv2_driver * D)
+     This function sets a pointer of the driver object D for control
+     object C.
+
+\1f
+File: gsl-ref.info,  Node: Evolution,  Next: Driver,  Prev: Adaptive Step-size Control,  Up: Ordinary Differential Equations
+
+26.4 Evolution
+==============
+
+The evolution function combines the results of a stepping function and
+control function to reliably advance the solution forward one step
+using an acceptable step-size.
+
+ -- Function: gsl_odeiv2_evolve * gsl_odeiv2_evolve_alloc (size_t DIM)
+     This function returns a pointer to a newly allocated instance of an
+     evolution function for a system of DIM dimensions.
+
+ -- Function: int gsl_odeiv2_evolve_apply (gsl_odeiv2_evolve * E,
+          gsl_odeiv2_control * CON, gsl_odeiv2_step * STEP, const
+          gsl_odeiv2_system * SYS, double * T, double T1, double * H,
+          double Y[])
+     This function advances the system (E, SYS) from time T and
+     position Y using the stepping function STEP.  The new time and
+     position are stored in T and Y on output.
+
+     The initial step-size is taken as H. The control function CON is
+     applied to check whether the local error estimated by the stepping
+     function STEP using step-size H exceeds the required error
+     tolerance. If the error is too high, the step is retried by
+     calling STEP with a decreased step-size. This process is continued
+     until an acceptable step-size is found. An estimate of the local
+     error for the step can be obtained from the components of the
+     array `E->yerr[]'.
+
+     If the user-supplied functions defined in the system SYS returns
+     `GSL_EBADFUNC', the function returns immediately with the same
+     return code. In this case the user must call
+     `gsl_odeiv2_step_reset' and `gsl_odeiv2_evolve_reset' before
+     calling this function again.
+
+     Otherwise, if the user-supplied functions defined in the system
+     SYS or the stepping function STEP return a status other than
+     `GSL_SUCCESS', the step is retried with a decreased step-size. If
+     the step-size decreases below machine precision, a status of
+     `GSL_FAILURE' is returned if the user functions returned
+     `GSL_SUCCESS'. Otherwise the value returned by user function is
+     returned. If no acceptable step can be made, T and Y will be
+     restored to their pre-step values and H contains the final
+     attempted step-size.
+
+     If the step is successful the function returns a suggested
+     step-size for the next step in H. The maximum time T1 is guaranteed
+     not to be exceeded by the time-step. On the final time-step the
+     value of T will be set to T1 exactly.
+
+ -- Function: int gsl_odeiv2_evolve_apply_fixed_step (gsl_odeiv2_evolve
+          * E, gsl_odeiv2_control * CON, gsl_odeiv2_step * STEP, const
+          gsl_odeiv2_system * SYS, double * T, const double H, double
+          Y[])
+     This function advances the ODE-system (E, SYS, CON) from time T
+     and position Y using the stepping function STEP by a specified
+     step size H. If the local error estimated by the stepping function
+     exceeds the desired error level, the step is not taken and the
+     function returns `GSL_FAILURE'. Otherwise the value returned by
+     user function is returned.
+
+ -- Function: int gsl_odeiv2_evolve_reset (gsl_odeiv2_evolve * E)
+     This function resets the evolution function E.  It should be used
+     whenever the next use of E will not be a continuation of a
+     previous step.
+
+ -- Function: void gsl_odeiv2_evolve_free (gsl_odeiv2_evolve * E)
+     This function frees all the memory associated with the evolution
+     function E.
+
+ -- Function: int gsl_odeiv2_evolve_set_driver (gsl_odeiv2_evolve * E,
+          const gsl_odeiv2_driver * D)
+     This function sets a pointer of the driver object D for evolve
+     object E.
+
+   If a system has discontinuous changes in the derivatives at known
+points, it is advisable to evolve the system between each discontinuity
+in sequence.  For example, if a step-change in an external driving
+force occurs at times t_a, t_b and t_c then evolution should be carried
+out over the ranges (t_0,t_a), (t_a,t_b), (t_b,t_c), and (t_c,t_1)
+separately and not directly over the range (t_0,t_1).
+
+\1f
+File: gsl-ref.info,  Node: Driver,  Next: ODE Example programs,  Prev: Evolution,  Up: Ordinary Differential Equations
+
+26.5 Driver
+===========
+
+The driver object is a high level wrapper that combines the evolution,
+control and stepper objects for easy use.
+
+ -- Function: gsl_odeiv2_driver * gsl_odeiv2_driver_alloc_y_new (const
+          gsl_odeiv2_system * SYS, const gsl_odeiv2_step_type * T,
+          const double HSTART, const double EPSABS, const double EPSREL)
+ -- Function: gsl_odeiv2_driver * gsl_odeiv2_driver_alloc_yp_new (const
+          gsl_odeiv2_system * SYS, const gsl_odeiv2_step_type * T,
+          const double HSTART, const double EPSABS, const double EPSREL)
+ -- Function: gsl_odeiv2_driver * gsl_odeiv2_driver_alloc_standard_new
+          (const gsl_odeiv2_system * SYS, const gsl_odeiv2_step_type *
+          T, const double HSTART, const double EPSABS, const double
+          EPSREL, const double A_Y, const double A_DYDT)
+ -- Function: gsl_odeiv2_driver * gsl_odeiv2_driver_alloc_scaled_new
+          (const gsl_odeiv2_system * SYS, const gsl_odeiv2_step_type *
+          T, const double HSTART, const double EPSABS, const double
+          EPSREL, const double A_Y, const double A_DYDT, const double
+          SCALE_ABS[])
+     These functions return a pointer to a newly allocated instance of a
+     driver object. The functions automatically allocate and initialise
+     the evolve, control and stepper objects for ODE system SYS using
+     stepper type T. The initial step size is given in HSTART. The rest
+     of the arguments follow the syntax and semantics of the control
+     functions with same name (`gsl_odeiv2_control_*_new').
+
+ -- Function: int gsl_odeiv2_driver_set_hmin (gsl_odeiv2_driver * d,
+          const double hmin)
+     The function sets a minimum for allowed step size HMIN for driver
+     D. Default value is 0.
+
+ -- Function: int gsl_odeiv2_driver_set_hmax (gsl_odeiv2_driver * d,
+          const double hmax)
+     The function sets a maximum for allowed step size HMAX for driver
+     D. Default value is `GSL_DBL_MAX'.
+
+ -- Function: int gsl_odeiv2_driver_set_nmax (gsl_odeiv2_driver * d,
+          const unsigned long int nmax)
+     The function sets a maximum for allowed number of steps NMAX for
+     driver D. Default value of 0 sets no limit for steps.
+
+ -- Function: int gsl_odeiv2_driver_apply (gsl_odeiv2_driver * D,
+          double * T, const double T1, double Y[])
+     This function evolves the driver system D from T to T1. Initially
+     vector Y should contain the values of dependent variables at point
+     T. If the function is unable to complete the calculation, an error
+     code from `gsl_odeiv2_evolve_apply' is returned, and T and Y
+     contain the values from last successful step.
+
+     If maximum number of steps is reached, a value of `GSL_EMAXITER'
+     is returned. If the step size drops below minimum value, the
+     function returns with `GSL_ENOPROG'. If the user-supplied functions
+     defined in the system SYS returns `GSL_EBADFUNC', the function
+     returns immediately with the same return code. In this case the
+     user must call `gsl_odeiv2_driver_reset' before calling this
+     function again.
+
+ -- Function: int gsl_odeiv2_driver_apply_fixed_step (gsl_odeiv2_driver
+          * D, double * T, const double H, const unsigned long int N,
+          double Y[])
+     This function evolves the driver system D from T with N steps of
+     size H. If the function is unable to complete the calculation, an
+     error code from `gsl_odeiv2_evolve_apply_fixed_step' is returned,
+     and T and Y contain the values from last successful step.
+
+ -- Function: int gsl_odeiv2_driver_reset (gsl_odeiv2_driver * d)
+     This function resets the evolution and stepper objects.
+
+ -- Function: int gsl_odeiv2_driver_free (gsl_odeiv2_driver * d)
+     This function frees the driver object, and the related evolution,
+     stepper and control objects.
+
+\1f
+File: gsl-ref.info,  Node: ODE Example programs,  Next: ODE References and Further Reading,  Prev: Driver,  Up: Ordinary Differential Equations
+
+26.6 Examples
+=============
+
+The following program solves the second-order nonlinear Van der Pol
+oscillator equation,
+
+     x\prime\prime(t) + \mu x\prime(t) (x(t)^2 - 1) + x(t) = 0
+
+This can be converted into a first order system suitable for use with
+the routines described in this chapter by introducing a separate
+variable for the velocity, y = x'(t),
+
+     x\prime = y
+     y\prime = -x + \mu y (1-x^2)
+
+The program begins by defining functions for these derivatives and
+their Jacobian. The main function uses driver level functions to solve
+the problem. The program evolves the solution from (y, y\prime) = (1,
+0) at t=0 to t=100.  The step-size h is automatically adjusted by the
+controller to maintain an absolute accuracy of 10^{-6} in the function
+values Y.  The loop in the example prints the solution at the points
+t_i = 1, 2, \dots, 100.
+
+     #include <stdio.h>
+     #include <gsl/gsl_errno.h>
+     #include <gsl/gsl_matrix.h>
+     #include <gsl/gsl_odeiv2.h>
+
+     int
+     func (double t, const double y[], double f[],
+           void *params)
+     {
+       double mu = *(double *)params;
+       f[0] = y[1];
+       f[1] = -y[0] - mu*y[1]*(y[0]*y[0] - 1);
+       return GSL_SUCCESS;
+     }
+
+     int
+     jac (double t, const double y[], double *dfdy,
+          double dfdt[], void *params)
+     {
+       double mu = *(double *)params;
+       gsl_matrix_view dfdy_mat
+         = gsl_matrix_view_array (dfdy, 2, 2);
+       gsl_matrix * m = &dfdy_mat.matrix;
+       gsl_matrix_set (m, 0, 0, 0.0);
+       gsl_matrix_set (m, 0, 1, 1.0);
+       gsl_matrix_set (m, 1, 0, -2.0*mu*y[0]*y[1] - 1.0);
+       gsl_matrix_set (m, 1, 1, -mu*(y[0]*y[0] - 1.0));
+       dfdt[0] = 0.0;
+       dfdt[1] = 0.0;
+       return GSL_SUCCESS;
+     }
+
+     int
+     main (void)
+     {
+       double mu = 10;
+       gsl_odeiv2_system sys = {func, jac, 2, &mu};
+
+       gsl_odeiv2_driver * d =
+         gsl_odeiv2_driver_alloc_y_new (&sys, gsl_odeiv2_step_rk8pd,
+                                 1e-6, 1e-6, 0.0);
+       int i;
+       double t = 0.0, t1 = 100.0;
+       double y[2] = { 1.0, 0.0 };
+
+       for (i = 1; i <= 100; i++)
+         {
+           double ti = i * t1 / 100.0;
+           int status = gsl_odeiv2_driver_apply (d, &t, ti, y);
+
+           if (status != GSL_SUCCESS)
+       {
+         printf ("error, return value=%d\n", status);
+         break;
+       }
+
+           printf ("%.5e %.5e %.5e\n", t, y[0], y[1]);
+         }
+
+       gsl_odeiv2_driver_free (d);
+       return 0;
+     }
+
+The user can work with the lower level functions directly, as in the
+following example. In this case an intermediate result is printed after
+each successful step instead of equidistant time points.
+
+     int
+     main (void)
+     {
+       const gsl_odeiv2_step_type * T
+         = gsl_odeiv2_step_rk8pd;
+
+       gsl_odeiv2_step * s
+         = gsl_odeiv2_step_alloc (T, 2);
+       gsl_odeiv2_control * c
+         = gsl_odeiv2_control_y_new (1e-6, 0.0);
+       gsl_odeiv2_evolve * e
+         = gsl_odeiv2_evolve_alloc (2);
+
+       double mu = 10;
+       gsl_odeiv2_system sys = {func, jac, 2, &mu};
+
+       double t = 0.0, t1 = 100.0;
+       double h = 1e-6;
+       double y[2] = { 1.0, 0.0 };
+
+       while (t < t1)
+         {
+           int status = gsl_odeiv2_evolve_apply (e, c, s,
+                                                &sys,
+                                                &t, t1,
+                                                &h, y);
+
+           if (status != GSL_SUCCESS)
+               break;
+
+           printf ("%.5e %.5e %.5e\n", t, y[0], y[1]);
+         }
+
+       gsl_odeiv2_evolve_free (e);
+       gsl_odeiv2_control_free (c);
+       gsl_odeiv2_step_free (s);
+       return 0;
+     }
+
+For functions with multiple parameters, the appropriate information can
+be passed in through the PARAMS argument in `gsl_odeiv2_system'
+definition (MU in this example) by using a pointer to a struct.
+
+It is also possible to work with a non-adaptive integrator, using only
+the stepping function itself, `gsl_odeiv2_driver_apply_fixed_step' or
+`gsl_odeiv2_evolve_apply_fixed_step'. The following program uses the
+driver level function, with fourth-order Runge-Kutta stepping function
+with a fixed stepsize of 0.001.
+
+     int
+     main (void)
+     {
+       double mu = 10;
+       gsl_odeiv2_system sys = { func, jac, 2, &mu };
+
+       gsl_odeiv2_driver *d =
+         gsl_odeiv2_driver_alloc_y_new (&sys, gsl_odeiv2_step_rk4,
+                                        1e-3, 1e-8, 1e-8);
+
+       double t = 0.0;
+       double y[2] = { 1.0, 0.0 };
+       int i, s;
+
+       for (i = 0; i < 100; i++)
+         {
+           s = gsl_odeiv2_driver_apply_fixed_step (d, &t, 1e-3, 1000, y);
+
+           if (s != GSL_SUCCESS)
+             {
+               printf ("error: driver returned %d\n", s);
+               break;
+             }
+
+           printf ("%.5e %.5e %.5e\n", t, y[0], y[1]);
+         }
+
+       gsl_odeiv2_driver_free (d);
+       return s;
+     }
+
+\1f
+File: gsl-ref.info,  Node: ODE References and Further Reading,  Prev: ODE Example programs,  Up: Ordinary Differential Equations
+
+26.7 References and Further Reading
+===================================
+
+     Ascher, U.M., Petzold, L.R., `Computer Methods for Ordinary
+     Differential and Differential-Algebraic Equations', SIAM,
+     Philadelphia, 1998.
+
+     Hairer, E., Norsett, S. P., Wanner, G., `Solving Ordinary
+     Differential Equations I: Nonstiff Problems', Springer, Berlin,
+     1993.
+
+     Hairer, E., Wanner, G., `Solving Ordinary Differential Equations
+     II: Stiff and Differential-Algebraic Problems', Springer, Berlin,
+     1996.
+
+   Many of the basic Runge-Kutta formulas can be found in the Handbook
+of Mathematical Functions,
+
+     Abramowitz & Stegun (eds.), `Handbook of Mathematical Functions',
+     Section 25.5.
+
+The implicit Bulirsch-Stoer algorithm `bsimp' is described in the
+following paper,
+
+     G. Bader and P. Deuflhard, "A Semi-Implicit Mid-Point Rule for
+     Stiff Systems of Ordinary Differential Equations.", Numer. Math.
+     41, 373-398, 1983.
+
+The Adams and BDF multistep methods `msadams' and `msbdf' are based on
+the following articles,
+
+     G. D. Byrne and A. C. Hindmarsh, "A Polyalgorithm for the
+     Numerical Solution of Ordinary Differential Equations.", ACM
+     Trans. Math. Software, 1, 71-96, 1975.
+
+     P. N. Brown, G. D. Byrne and A. C. Hindmarsh, "VODE: A
+     Variable-coefficient ODE Solver.", SIAM J. Sci. Stat. Comput. 10,
+     1038-1051, 1989.
+
+     A. C. Hindmarsh, P. N. Brown, K. E. Grant, S. L. Lee, R. Serban,
+     D. E. Shumaker and C. S. Woodward, "SUNDIALS: Suite of Nonlinear
+     and Differential/Algebraic Equation Solvers.", ACM Trans. Math.
+     Software 31, 363-396, 2005.
+
+\1f
+File: gsl-ref.info,  Node: Interpolation,  Next: Numerical Differentiation,  Prev: Ordinary Differential Equations,  Up: Top
+
+27 Interpolation
+****************
+
+This chapter describes functions for performing interpolation.  The
+library provides a variety of interpolation methods, including Cubic
+splines and Akima splines.  The interpolation types are interchangeable,
+allowing different methods to be used without recompiling.
+Interpolations can be defined for both normal and periodic boundary
+conditions.  Additional functions are available for computing
+derivatives and integrals of interpolating functions.
+
+   These interpolation methods produce curves that pass through each
+datapoint.  To interpolate noisy data with a smoothing curve see *note
+Basis Splines::.
+
+   The functions described in this section are declared in the header
+files `gsl_interp.h' and `gsl_spline.h'.
+
+* Menu:
+
+* Introduction to Interpolation::
+* Interpolation Functions::
+* Interpolation Types::
+* Index Look-up and Acceleration::
+* Evaluation of Interpolating Functions::
+* Higher-level Interface::
+* Interpolation Example programs::
+* Interpolation References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Introduction to Interpolation,  Next: Interpolation Functions,  Up: Interpolation
+
+27.1 Introduction
+=================
+
+Given a set of data points (x_1, y_1) \dots (x_n, y_n) the routines
+described in this section compute a continuous interpolating function
+y(x) such that y(x_i) = y_i.  The interpolation is piecewise smooth,
+and its behavior at the end-points is determined by the type of
+interpolation used.
+
+\1f
+File: gsl-ref.info,  Node: Interpolation Functions,  Next: Interpolation Types,  Prev: Introduction to Interpolation,  Up: Interpolation
+
+27.2 Interpolation Functions
+============================
+
+The interpolation function for a given dataset is stored in a
+`gsl_interp' object.  These are created by the following functions.
+
+ -- Function: gsl_interp * gsl_interp_alloc (const gsl_interp_type * T,
+          size_t SIZE)
+     This function returns a pointer to a newly allocated interpolation
+     object of type T for SIZE data-points.
+
+ -- Function: int gsl_interp_init (gsl_interp * INTERP, const double
+          XA[], const double YA[], size_t SIZE)
+     This function initializes the interpolation object INTERP for the
+     data (XA,YA) where XA and YA are arrays of size SIZE.  The
+     interpolation object (`gsl_interp') does not save the data arrays
+     XA and YA and only stores the static state computed from the data.
+     The XA data array is always assumed to be strictly ordered, with
+     increasing x values; the behavior for other arrangements is not
+     defined.
+
+ -- Function: void gsl_interp_free (gsl_interp * INTERP)
+     This function frees the interpolation object INTERP.
+
+\1f
+File: gsl-ref.info,  Node: Interpolation Types,  Next: Index Look-up and Acceleration,  Prev: Interpolation Functions,  Up: Interpolation
+
+27.3 Interpolation Types
+========================
+
+The interpolation library provides six interpolation types:
+
+ -- Interpolation Type: gsl_interp_linear
+     Linear interpolation.  This interpolation method does not require
+     any additional memory.
+
+ -- Interpolation Type: gsl_interp_polynomial
+     Polynomial interpolation.  This method should only be used for
+     interpolating small numbers of points because polynomial
+     interpolation introduces large oscillations, even for well-behaved
+     datasets.  The number of terms in the interpolating polynomial is
+     equal to the number of points.
+
+ -- Interpolation Type: gsl_interp_cspline
+     Cubic spline with natural boundary conditions.  The resulting
+     curve is piecewise cubic on each interval, with matching first and
+     second derivatives at the supplied data-points.  The second
+     derivative is chosen to be zero at the first point and last point.
+
+ -- Interpolation Type: gsl_interp_cspline_periodic
+     Cubic spline with periodic boundary conditions.  The resulting
+     curve is piecewise cubic on each interval, with matching first and
+     second derivatives at the supplied data-points.  The derivatives
+     at the first and last points are also matched.  Note that the last
+     point in the data must have the same y-value as the first point,
+     otherwise the resulting periodic interpolation will have a
+     discontinuity at the boundary.
+
+
+ -- Interpolation Type: gsl_interp_akima
+     Non-rounded Akima spline with natural boundary conditions.  This
+     method uses the non-rounded corner algorithm of Wodicka.
+
+ -- Interpolation Type: gsl_interp_akima_periodic
+     Non-rounded Akima spline with periodic boundary conditions.  This
+     method uses the non-rounded corner algorithm of Wodicka.
+
+   The following related functions are available:
+
+ -- Function: const char * gsl_interp_name (const gsl_interp * INTERP)
+     This function returns the name of the interpolation type used by
+     INTERP.  For example,
+
+          printf ("interp uses '%s' interpolation.\n",
+                  gsl_interp_name (interp));
+
+     would print something like,
+
+          interp uses 'cspline' interpolation.
+
+ -- Function: unsigned int gsl_interp_min_size (const gsl_interp *
+          INTERP)
+ -- Function: unsigned int gsl_interp_type_min_size (const
+          gsl_interp_type * T)
+     These functions return the minimum number of points required by the
+     interpolation object INTERP or interpolation type T.  For example,
+     Akima spline interpolation requires a minimum of 5 points.
+
+\1f
+File: gsl-ref.info,  Node: Index Look-up and Acceleration,  Next: Evaluation of Interpolating Functions,  Prev: Interpolation Types,  Up: Interpolation
+
+27.4 Index Look-up and Acceleration
+===================================
+
+The state of searches can be stored in a `gsl_interp_accel' object,
+which is a kind of iterator for interpolation lookups.  It caches the
+previous value of an index lookup.  When the subsequent interpolation
+point falls in the same interval its index value can be returned
+immediately.
+
+ -- Function: size_t gsl_interp_bsearch (const double X_ARRAY[], double
+          X, size_t INDEX_LO, size_t INDEX_HI)
+     This function returns the index i of the array X_ARRAY such that
+     `x_array[i] <= x < x_array[i+1]'.  The index is searched for in
+     the range [INDEX_LO,INDEX_HI].  An inline version of this function
+     is used when `HAVE_INLINE' is defined.
+
+ -- Function: gsl_interp_accel * gsl_interp_accel_alloc (void)
+     This function returns a pointer to an accelerator object, which is
+     a kind of iterator for interpolation lookups.  It tracks the state
+     of lookups, thus allowing for application of various acceleration
+     strategies.
+
+ -- Function: size_t gsl_interp_accel_find (gsl_interp_accel * A, const
+          double X_ARRAY[], size_t SIZE, double X)
+     This function performs a lookup action on the data array X_ARRAY
+     of size SIZE, using the given accelerator A.  This is how lookups
+     are performed during evaluation of an interpolation.  The function
+     returns an index i such that `x_array[i] <= x < x_array[i+1]'.  An
+     inline version of this function is used when `HAVE_INLINE' is
+     defined.
+
+ -- Function: int gsl_interp_accel_reset (gsl_interp_accel * ACC);
+     This function reinitializes the accelerator object ACC.  It should
+     be used when the cached information is no longer applicable--for
+     example, when switching to a new dataset.
+
+ -- Function: void gsl_interp_accel_free (gsl_interp_accel* ACC)
+     This function frees the accelerator object ACC.
+
+\1f
+File: gsl-ref.info,  Node: Evaluation of Interpolating Functions,  Next: Higher-level Interface,  Prev: Index Look-up and Acceleration,  Up: Interpolation
+
+27.5 Evaluation of Interpolating Functions
+==========================================
+
+ -- Function: double gsl_interp_eval (const gsl_interp * INTERP, const
+          double XA[], const double YA[], double X, gsl_interp_accel *
+          ACC)
+ -- Function: int gsl_interp_eval_e (const gsl_interp * INTERP, const
+          double XA[], const double YA[], double X, gsl_interp_accel *
+          ACC, double * Y)
+     These functions return the interpolated value of Y for a given
+     point X, using the interpolation object INTERP, data arrays XA and
+     YA and the accelerator ACC.  When X is outside the range of XA,
+     the error code `GSL_EDOM' is returned with a value of `GSL_NAN' for
+     Y.
+
+ -- Function: double gsl_interp_eval_deriv (const gsl_interp * INTERP,
+          const double XA[], const double YA[], double X,
+          gsl_interp_accel * ACC)
+ -- Function: int gsl_interp_eval_deriv_e (const gsl_interp * INTERP,
+          const double XA[], const double YA[], double X,
+          gsl_interp_accel * ACC, double * D)
+     These functions return the derivative D of an interpolated
+     function for a given point X, using the interpolation object
+     INTERP, data arrays XA and YA and the accelerator ACC.
+
+ -- Function: double gsl_interp_eval_deriv2 (const gsl_interp * INTERP,
+          const double XA[], const double YA[], double X,
+          gsl_interp_accel * ACC)
+ -- Function: int gsl_interp_eval_deriv2_e (const gsl_interp * INTERP,
+          const double XA[], const double YA[], double X,
+          gsl_interp_accel * ACC, double * D2)
+     These functions return the second derivative D2 of an interpolated
+     function for a given point X, using the interpolation object
+     INTERP, data arrays XA and YA and the accelerator ACC.
+
+ -- Function: double gsl_interp_eval_integ (const gsl_interp * INTERP,
+          const double XA[], const double YA[], double A, double B,
+          gsl_interp_accel * ACC)
+ -- Function: int gsl_interp_eval_integ_e (const gsl_interp * INTERP,
+          const double XA[], const double YA[], double A, double B,
+          gsl_interp_accel * ACC, double * RESULT)
+     These functions return the numerical integral RESULT of an
+     interpolated function over the range [A, B], using the
+     interpolation object INTERP, data arrays XA and YA and the
+     accelerator ACC.
+
+\1f
+File: gsl-ref.info,  Node: Higher-level Interface,  Next: Interpolation Example programs,  Prev: Evaluation of Interpolating Functions,  Up: Interpolation
+
+27.6 Higher-level Interface
+===========================
+
+The functions described in the previous sections required the user to
+supply pointers to the x and y arrays on each call.  The following
+functions are equivalent to the corresponding `gsl_interp' functions
+but maintain a copy of this data in the `gsl_spline' object.  This
+removes the need to pass both XA and YA as arguments on each
+evaluation. These functions are defined in the header file
+`gsl_spline.h'.
+
+ -- Function: gsl_spline * gsl_spline_alloc (const gsl_interp_type * T,
+          size_t SIZE)
+
+ -- Function: int gsl_spline_init (gsl_spline * SPLINE, const double
+          XA[], const double YA[], size_t SIZE)
+
+ -- Function: void gsl_spline_free (gsl_spline * SPLINE)
+
+ -- Function: const char * gsl_spline_name (const gsl_spline * SPLINE)
+
+ -- Function: unsigned int gsl_spline_min_size (const gsl_spline *
+          SPLINE)
+
+ -- Function: double gsl_spline_eval (const gsl_spline * SPLINE, double
+          X, gsl_interp_accel * ACC)
+ -- Function: int gsl_spline_eval_e (const gsl_spline * SPLINE, double
+          X, gsl_interp_accel * ACC, double * Y)
+
+ -- Function: double gsl_spline_eval_deriv (const gsl_spline * SPLINE,
+          double X, gsl_interp_accel * ACC)
+ -- Function: int gsl_spline_eval_deriv_e (const gsl_spline * SPLINE,
+          double X, gsl_interp_accel * ACC, double * D)
+
+ -- Function: double gsl_spline_eval_deriv2 (const gsl_spline * SPLINE,
+          double X, gsl_interp_accel * ACC)
+ -- Function: int gsl_spline_eval_deriv2_e (const gsl_spline * SPLINE,
+          double X, gsl_interp_accel * ACC, double * D2)
+
+ -- Function: double gsl_spline_eval_integ (const gsl_spline * SPLINE,
+          double A, double B, gsl_interp_accel * ACC)
+ -- Function: int gsl_spline_eval_integ_e (const gsl_spline * SPLINE,
+          double A, double B, gsl_interp_accel * ACC, double * RESULT)
+
+\1f
+File: gsl-ref.info,  Node: Interpolation Example programs,  Next: Interpolation References and Further Reading,  Prev: Higher-level Interface,  Up: Interpolation
+
+27.7 Examples
+=============
+
+The following program demonstrates the use of the interpolation and
+spline functions.  It computes a cubic spline interpolation of the
+10-point dataset (x_i, y_i) where x_i = i + \sin(i)/2 and y_i = i +
+\cos(i^2) for i = 0 \dots 9.
+
+     #include <stdlib.h>
+     #include <stdio.h>
+     #include <math.h>
+     #include <gsl/gsl_errno.h>
+     #include <gsl/gsl_spline.h>
+
+     int
+     main (void)
+     {
+       int i;
+       double xi, yi, x[10], y[10];
+
+       printf ("#m=0,S=2\n");
+
+       for (i = 0; i < 10; i++)
+         {
+           x[i] = i + 0.5 * sin (i);
+           y[i] = i + cos (i * i);
+           printf ("%g %g\n", x[i], y[i]);
+         }
+
+       printf ("#m=1,S=0\n");
+
+       {
+         gsl_interp_accel *acc
+           = gsl_interp_accel_alloc ();
+         gsl_spline *spline
+           = gsl_spline_alloc (gsl_interp_cspline, 10);
+
+         gsl_spline_init (spline, x, y, 10);
+
+         for (xi = x[0]; xi < x[9]; xi += 0.01)
+           {
+             yi = gsl_spline_eval (spline, xi, acc);
+             printf ("%g %g\n", xi, yi);
+           }
+         gsl_spline_free (spline);
+         gsl_interp_accel_free (acc);
+       }
+       return 0;
+     }
+
+The output is designed to be used with the GNU plotutils `graph'
+program,
+
+     $ ./a.out > interp.dat
+     $ graph -T ps < interp.dat > interp.ps
+
+The result shows a smooth interpolation of the original points.  The
+interpolation method can be changed simply by varying the first
+argument of `gsl_spline_alloc'.
+
+   The next program demonstrates a periodic cubic spline with 4 data
+points.  Note that the first and last points must be supplied with the
+same y-value for a periodic spline.
+
+     #include <stdlib.h>
+     #include <stdio.h>
+     #include <math.h>
+     #include <gsl/gsl_errno.h>
+     #include <gsl/gsl_spline.h>
+
+     int
+     main (void)
+     {
+       int N = 4;
+       double x[4] = {0.00, 0.10,  0.27,  0.30};
+       double y[4] = {0.15, 0.70, -0.10,  0.15};
+                  /* Note: y[0] == y[3] for periodic data */
+
+       gsl_interp_accel *acc = gsl_interp_accel_alloc ();
+       const gsl_interp_type *t = gsl_interp_cspline_periodic;
+       gsl_spline *spline = gsl_spline_alloc (t, N);
+
+       int i; double xi, yi;
+
+       printf ("#m=0,S=5\n");
+       for (i = 0; i < N; i++)
+         {
+           printf ("%g %g\n", x[i], y[i]);
+         }
+
+       printf ("#m=1,S=0\n");
+       gsl_spline_init (spline, x, y, N);
+
+       for (i = 0; i <= 100; i++)
+         {
+           xi = (1 - i / 100.0) * x[0] + (i / 100.0) * x[N-1];
+           yi = gsl_spline_eval (spline, xi, acc);
+           printf ("%g %g\n", xi, yi);
+         }
+
+       gsl_spline_free (spline);
+       gsl_interp_accel_free (acc);
+       return 0;
+     }
+
+The output can be plotted with GNU `graph'.
+
+     $ ./a.out > interp.dat
+     $ graph -T ps < interp.dat > interp.ps
+
+The result shows a periodic interpolation of the original points. The
+slope of the fitted curve is the same at the beginning and end of the
+data, and the second derivative is also.
+
+\1f
+File: gsl-ref.info,  Node: Interpolation References and Further Reading,  Prev: Interpolation Example programs,  Up: Interpolation
+
+27.8 References and Further Reading
+===================================
+
+Descriptions of the interpolation algorithms and further references can
+be found in the following books:
+
+     C.W. Ueberhuber, `Numerical Computation (Volume 1), Chapter 9
+     "Interpolation"', Springer (1997), ISBN 3-540-62058-3.
+
+     D.M. Young, R.T. Gregory `A Survey of Numerical Mathematics
+     (Volume 1), Chapter 6.8', Dover (1988), ISBN 0-486-65691-8.
+
+
+\1f
+File: gsl-ref.info,  Node: Numerical Differentiation,  Next: Chebyshev Approximations,  Prev: Interpolation,  Up: Top
+
+28 Numerical Differentiation
+****************************
+
+The functions described in this chapter compute numerical derivatives by
+finite differencing.  An adaptive algorithm is used to find the best
+choice of finite difference and to estimate the error in the derivative.
+These functions are declared in the header file `gsl_deriv.h'.
+
+* Menu:
+
+* Numerical Differentiation functions::
+* Numerical Differentiation Examples::
+* Numerical Differentiation References::
+
+\1f
+File: gsl-ref.info,  Node: Numerical Differentiation functions,  Next: Numerical Differentiation Examples,  Up: Numerical Differentiation
+
+28.1 Functions
+==============
+
+ -- Function: int gsl_deriv_central (const gsl_function * F, double X,
+          double H, double * RESULT, double * ABSERR)
+     This function computes the numerical derivative of the function F
+     at the point X using an adaptive central difference algorithm with
+     a step-size of H.   The derivative is returned in RESULT and an
+     estimate of its absolute error is returned in ABSERR.
+
+     The initial value of H is used to estimate an optimal step-size,
+     based on the scaling of the truncation error and round-off error
+     in the derivative calculation.  The derivative is computed using a
+     5-point rule for equally spaced abscissae at x-h, x-h/2, x, x+h/2,
+     x+h, with an error estimate taken from the difference between the
+     5-point rule and the corresponding 3-point rule x-h, x, x+h.  Note
+     that the value of the function at x does not contribute to the
+     derivative calculation, so only 4-points are actually used.
+
+ -- Function: int gsl_deriv_forward (const gsl_function * F, double X,
+          double H, double * RESULT, double * ABSERR)
+     This function computes the numerical derivative of the function F
+     at the point X using an adaptive forward difference algorithm with
+     a step-size of H. The function is evaluated only at points greater
+     than X, and never at X itself.  The derivative is returned in
+     RESULT and an estimate of its absolute error is returned in
+     ABSERR.  This function should be used if f(x) has a discontinuity
+     at X, or is undefined for values less than X.
+
+     The initial value of H is used to estimate an optimal step-size,
+     based on the scaling of the truncation error and round-off error
+     in the derivative calculation.  The derivative at x is computed
+     using an "open" 4-point rule for equally spaced abscissae at x+h/4,
+     x+h/2, x+3h/4, x+h, with an error estimate taken from the
+     difference between the 4-point rule and the corresponding 2-point
+     rule x+h/2, x+h.
+
+ -- Function: int gsl_deriv_backward (const gsl_function * F, double X,
+          double H, double * RESULT, double * ABSERR)
+     This function computes the numerical derivative of the function F
+     at the point X using an adaptive backward difference algorithm
+     with a step-size of H. The function is evaluated only at points
+     less than X, and never at X itself.  The derivative is returned in
+     RESULT and an estimate of its absolute error is returned in
+     ABSERR.  This function should be used if f(x) has a discontinuity
+     at X, or is undefined for values greater than X.
+
+     This function is equivalent to calling `gsl_deriv_forward' with a
+     negative step-size.
+
+\1f
+File: gsl-ref.info,  Node: Numerical Differentiation Examples,  Next: Numerical Differentiation References,  Prev: Numerical Differentiation functions,  Up: Numerical Differentiation
+
+28.2 Examples
+=============
+
+The following code estimates the derivative of the function f(x) =
+x^{3/2} at x=2 and at x=0.  The function f(x) is undefined for x<0 so
+the derivative at x=0 is computed using `gsl_deriv_forward'.
+
+     #include <stdio.h>
+     #include <gsl/gsl_math.h>
+     #include <gsl/gsl_deriv.h>
+
+     double f (double x, void * params)
+     {
+       return pow (x, 1.5);
+     }
+
+     int
+     main (void)
+     {
+       gsl_function F;
+       double result, abserr;
+
+       F.function = &f;
+       F.params = 0;
+
+       printf ("f(x) = x^(3/2)\n");
+
+       gsl_deriv_central (&F, 2.0, 1e-8, &result, &abserr);
+       printf ("x = 2.0\n");
+       printf ("f'(x) = %.10f +/- %.10f\n", result, abserr);
+       printf ("exact = %.10f\n\n", 1.5 * sqrt(2.0));
+
+       gsl_deriv_forward (&F, 0.0, 1e-8, &result, &abserr);
+       printf ("x = 0.0\n");
+       printf ("f'(x) = %.10f +/- %.10f\n", result, abserr);
+       printf ("exact = %.10f\n", 0.0);
+
+       return 0;
+     }
+
+Here is the output of the program,
+
+     $ ./a.out
+     f(x) = x^(3/2)
+     x = 2.0
+     f'(x) = 2.1213203120 +/- 0.0000004064
+     exact = 2.1213203436
+
+     x = 0.0
+     f'(x) = 0.0000000160 +/- 0.0000000339
+     exact = 0.0000000000
+
+\1f
+File: gsl-ref.info,  Node: Numerical Differentiation References,  Prev: Numerical Differentiation Examples,  Up: Numerical Differentiation
+
+28.3 References and Further Reading
+===================================
+
+The algorithms used by these functions are described in the following
+sources:
+
+     Abramowitz and Stegun, `Handbook of Mathematical Functions',
+     Section 25.3.4, and Table 25.5 (Coefficients for Differentiation).
+
+     S.D. Conte and Carl de Boor, `Elementary Numerical Analysis: An
+     Algorithmic Approach', McGraw-Hill, 1972.
+
+\1f
+File: gsl-ref.info,  Node: Chebyshev Approximations,  Next: Series Acceleration,  Prev: Numerical Differentiation,  Up: Top
+
+29 Chebyshev Approximations
+***************************
+
+This chapter describes routines for computing Chebyshev approximations
+to univariate functions.  A Chebyshev approximation is a truncation of
+the series f(x) = \sum c_n T_n(x), where the Chebyshev polynomials
+T_n(x) = \cos(n \arccos x) provide an orthogonal basis of polynomials
+on the interval [-1,1] with the weight function 1 / \sqrt{1-x^2}.  The
+first few Chebyshev polynomials are, T_0(x) = 1, T_1(x) = x, T_2(x) = 2
+x^2 - 1.  For further information see Abramowitz & Stegun, Chapter 22.
+
+   The functions described in this chapter are declared in the header
+file `gsl_chebyshev.h'.
+
+* Menu:
+
+* Chebyshev Definitions::
+* Creation and Calculation of Chebyshev Series::
+* Auxiliary Functions for Chebyshev Series::
+* Chebyshev Series Evaluation::
+* Derivatives and Integrals::
+* Chebyshev Approximation Examples::
+* Chebyshev Approximation References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Chebyshev Definitions,  Next: Creation and Calculation of Chebyshev Series,  Up: Chebyshev Approximations
+
+29.1 Definitions
+================
+
+A Chebyshev series  is stored using the following structure,
+
+     typedef struct
+     {
+       double * c;   /* coefficients  c[0] .. c[order] */
+       int order;    /* order of expansion             */
+       double a;     /* lower interval point           */
+       double b;     /* upper interval point           */
+       ...
+     } gsl_cheb_series
+
+The approximation is made over the range [a,b] using ORDER+1 terms,
+including the coefficient c[0].  The series is computed using the
+following convention,
+
+     f(x) = (c_0 / 2) + \sum_{n=1} c_n T_n(x)
+
+which is needed when accessing the coefficients directly.
+
+\1f
+File: gsl-ref.info,  Node: Creation and Calculation of Chebyshev Series,  Next: Auxiliary Functions for Chebyshev Series,  Prev: Chebyshev Definitions,  Up: Chebyshev Approximations
+
+29.2 Creation and Calculation of Chebyshev Series
+=================================================
+
+ -- Function: gsl_cheb_series * gsl_cheb_alloc (const size_t N)
+     This function allocates space for a Chebyshev series of order N
+     and returns a pointer to a new `gsl_cheb_series' struct.
+
+ -- Function: void gsl_cheb_free (gsl_cheb_series * CS)
+     This function frees a previously allocated Chebyshev series CS.
+
+ -- Function: int gsl_cheb_init (gsl_cheb_series * CS, const
+          gsl_function * F, const double A, const double B)
+     This function computes the Chebyshev approximation CS for the
+     function F over the range (a,b) to the previously specified order.
+     The computation of the Chebyshev approximation is an O(n^2)
+     process, and requires n function evaluations.
+
+\1f
+File: gsl-ref.info,  Node: Auxiliary Functions for Chebyshev Series,  Next: Chebyshev Series Evaluation,  Prev: Creation and Calculation of Chebyshev Series,  Up: Chebyshev Approximations
+
+29.3 Auxiliary Functions
+========================
+
+The following functions provide information about an existing Chebyshev
+series.
+
+ -- Function: size_t gsl_cheb_order (const gsl_cheb_series * CS)
+     This function returns the order of Chebyshev series CS.
+
+ -- Function: size_t gsl_cheb_size (const gsl_cheb_series * CS)
+ -- Function: double * gsl_cheb_coeffs (const gsl_cheb_series * CS)
+     These functions return the size of the Chebyshev coefficient array
+     `c[]' and a pointer to its location in memory for the Chebyshev
+     series CS.
+
+\1f
+File: gsl-ref.info,  Node: Chebyshev Series Evaluation,  Next: Derivatives and Integrals,  Prev: Auxiliary Functions for Chebyshev Series,  Up: Chebyshev Approximations
+
+29.4 Chebyshev Series Evaluation
+================================
+
+ -- Function: double gsl_cheb_eval (const gsl_cheb_series * CS, double
+          X)
+     This function evaluates the Chebyshev series CS at a given point X.
+
+ -- Function: int gsl_cheb_eval_err (const gsl_cheb_series * CS, const
+          double X, double * RESULT, double * ABSERR)
+     This function computes the Chebyshev series CS at a given point X,
+     estimating both the series RESULT and its absolute error ABSERR.
+     The error estimate is made from the first neglected term in the
+     series.
+
+ -- Function: double gsl_cheb_eval_n (const gsl_cheb_series * CS,
+          size_t ORDER, double X)
+     This function evaluates the Chebyshev series CS at a given point
+     X, to (at most) the given order ORDER.
+
+ -- Function: int gsl_cheb_eval_n_err (const gsl_cheb_series * CS,
+          const size_t ORDER, const double X, double * RESULT, double *
+          ABSERR)
+     This function evaluates a Chebyshev series CS at a given point X,
+     estimating both the series RESULT and its absolute error ABSERR,
+     to (at most) the given order ORDER.  The error estimate is made
+     from the first neglected term in the series.
+
+\1f
+File: gsl-ref.info,  Node: Derivatives and Integrals,  Next: Chebyshev Approximation Examples,  Prev: Chebyshev Series Evaluation,  Up: Chebyshev Approximations
+
+29.5 Derivatives and Integrals
+==============================
+
+The following functions allow a Chebyshev series to be differentiated or
+integrated, producing a new Chebyshev series.  Note that the error
+estimate produced by evaluating the derivative series will be
+underestimated due to the contribution of higher order terms being
+neglected.
+
+ -- Function: int gsl_cheb_calc_deriv (gsl_cheb_series * DERIV, const
+          gsl_cheb_series * CS)
+     This function computes the derivative of the series CS, storing
+     the derivative coefficients in the previously allocated DERIV.
+     The two series CS and DERIV must have been allocated with the same
+     order.
+
+ -- Function: int gsl_cheb_calc_integ (gsl_cheb_series * INTEG, const
+          gsl_cheb_series * CS)
+     This function computes the integral of the series CS, storing the
+     integral coefficients in the previously allocated INTEG.  The two
+     series CS and INTEG must have been allocated with the same order.
+     The lower limit of the integration is taken to be the left hand
+     end of the range A.
+
+\1f
+File: gsl-ref.info,  Node: Chebyshev Approximation Examples,  Next: Chebyshev Approximation References and Further Reading,  Prev: Derivatives and Integrals,  Up: Chebyshev Approximations
+
+29.6 Examples
+=============
+
+The following example program computes Chebyshev approximations to a
+step function.  This is an extremely difficult approximation to make,
+due to the discontinuity, and was chosen as an example where
+approximation error is visible.  For smooth functions the Chebyshev
+approximation converges extremely rapidly and errors would not be
+visible.
+
+     #include <stdio.h>
+     #include <gsl/gsl_math.h>
+     #include <gsl/gsl_chebyshev.h>
+
+     double
+     f (double x, void *p)
+     {
+       if (x < 0.5)
+         return 0.25;
+       else
+         return 0.75;
+     }
+
+     int
+     main (void)
+     {
+       int i, n = 10000;
+
+       gsl_cheb_series *cs = gsl_cheb_alloc (40);
+
+       gsl_function F;
+
+       F.function = f;
+       F.params = 0;
+
+       gsl_cheb_init (cs, &F, 0.0, 1.0);
+
+       for (i = 0; i < n; i++)
+         {
+           double x = i / (double)n;
+           double r10 = gsl_cheb_eval_n (cs, 10, x);
+           double r40 = gsl_cheb_eval (cs, x);
+           printf ("%g %g %g %g\n",
+                   x, GSL_FN_EVAL (&F, x), r10, r40);
+         }
+
+       gsl_cheb_free (cs);
+
+       return 0;
+     }
+
+The output from the program gives the original function, 10-th order
+approximation and 40-th order approximation, all sampled at intervals of
+0.001 in x.
+
+\1f
+File: gsl-ref.info,  Node: Chebyshev Approximation References and Further Reading,  Prev: Chebyshev Approximation Examples,  Up: Chebyshev Approximations
+
+29.7 References and Further Reading
+===================================
+
+The following paper describes the use of Chebyshev series,
+
+     R. Broucke, "Ten Subroutines for the Manipulation of Chebyshev
+     Series [C1] (Algorithm 446)". `Communications of the ACM' 16(4),
+     254-256 (1973)
+
+\1f
+File: gsl-ref.info,  Node: Series Acceleration,  Next: Wavelet Transforms,  Prev: Chebyshev Approximations,  Up: Top
+
+30 Series Acceleration
+**********************
+
+The functions described in this chapter accelerate the convergence of a
+series using the Levin u-transform.  This method takes a small number of
+terms from the start of a series and uses a systematic approximation to
+compute an extrapolated value and an estimate of its error.  The
+u-transform works for both convergent and divergent series, including
+asymptotic series.
+
+   These functions are declared in the header file `gsl_sum.h'.
+
+* Menu:
+
+* Acceleration functions::
+* Acceleration functions without error estimation::
+* Example of accelerating a series::
+* Series Acceleration References::
+
+\1f
+File: gsl-ref.info,  Node: Acceleration functions,  Next: Acceleration functions without error estimation,  Up: Series Acceleration
+
+30.1 Acceleration functions
+===========================
+
+The following functions compute the full Levin u-transform of a series
+with its error estimate.  The error estimate is computed by propagating
+rounding errors from each term through to the final extrapolation.
+
+   These functions are intended for summing analytic series where each
+term is known to high accuracy, and the rounding errors are assumed to
+originate from finite precision. They are taken to be relative errors of
+order `GSL_DBL_EPSILON' for each term.
+
+   The calculation of the error in the extrapolated value is an O(N^2)
+process, which is expensive in time and memory.  A faster but less
+reliable method which estimates the error from the convergence of the
+extrapolated value is described in the next section.  For the method
+described here a full table of intermediate values and derivatives
+through to O(N) must be computed and stored, but this does give a
+reliable error estimate.
+
+ -- Function: gsl_sum_levin_u_workspace * gsl_sum_levin_u_alloc (size_t
+          N)
+     This function allocates a workspace for a Levin u-transform of N
+     terms.  The size of the workspace is O(2n^2 + 3n).
+
+ -- Function: void gsl_sum_levin_u_free (gsl_sum_levin_u_workspace * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: int gsl_sum_levin_u_accel (const double * ARRAY, size_t
+          ARRAY_SIZE, gsl_sum_levin_u_workspace * W, double *
+          SUM_ACCEL, double * ABSERR)
+     This function takes the terms of a series in ARRAY of size
+     ARRAY_SIZE and computes the extrapolated limit of the series using
+     a Levin u-transform.  Additional working space must be provided in
+     W.  The extrapolated sum is stored in SUM_ACCEL, with an estimate
+     of the absolute error stored in ABSERR.  The actual term-by-term
+     sum is returned in `w->sum_plain'. The algorithm calculates the
+     truncation error (the difference between two successive
+     extrapolations) and round-off error (propagated from the individual
+     terms) to choose an optimal number of terms for the extrapolation.
+     All the terms of the series passed in through ARRAY should be
+     non-zero.
+
+\1f
+File: gsl-ref.info,  Node: Acceleration functions without error estimation,  Next: Example of accelerating a series,  Prev: Acceleration functions,  Up: Series Acceleration
+
+30.2 Acceleration functions without error estimation
+====================================================
+
+The functions described in this section compute the Levin u-transform of
+series and attempt to estimate the error from the "truncation error" in
+the extrapolation, the difference between the final two approximations.
+Using this method avoids the need to compute an intermediate table of
+derivatives because the error is estimated from the behavior of the
+extrapolated value itself. Consequently this algorithm is an O(N)
+process and only requires O(N) terms of storage.  If the series
+converges sufficiently fast then this procedure can be acceptable.  It
+is appropriate to use this method when there is a need to compute many
+extrapolations of series with similar convergence properties at
+high-speed.  For example, when numerically integrating a function
+defined by a parameterized series where the parameter varies only
+slightly. A reliable error estimate should be computed first using the
+full algorithm described above in order to verify the consistency of the
+results.
+
+ -- Function: gsl_sum_levin_utrunc_workspace *
+gsl_sum_levin_utrunc_alloc (size_t N)
+     This function allocates a workspace for a Levin u-transform of N
+     terms, without error estimation.  The size of the workspace is
+     O(3n).
+
+ -- Function: void gsl_sum_levin_utrunc_free
+          (gsl_sum_levin_utrunc_workspace * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: int gsl_sum_levin_utrunc_accel (const double * ARRAY,
+          size_t ARRAY_SIZE, gsl_sum_levin_utrunc_workspace * W, double
+          * SUM_ACCEL, double * ABSERR_TRUNC)
+     This function takes the terms of a series in ARRAY of size
+     ARRAY_SIZE and computes the extrapolated limit of the series using
+     a Levin u-transform.  Additional working space must be provided in
+     W.  The extrapolated sum is stored in SUM_ACCEL.  The actual
+     term-by-term sum is returned in `w->sum_plain'. The algorithm
+     terminates when the difference between two successive
+     extrapolations reaches a minimum or is sufficiently small. The
+     difference between these two values is used as estimate of the
+     error and is stored in ABSERR_TRUNC.  To improve the reliability
+     of the algorithm the extrapolated values are replaced by moving
+     averages when calculating the truncation error, smoothing out any
+     fluctuations.
+
+\1f
+File: gsl-ref.info,  Node: Example of accelerating a series,  Next: Series Acceleration References,  Prev: Acceleration functions without error estimation,  Up: Series Acceleration
+
+30.3 Examples
+=============
+
+The following code calculates an estimate of \zeta(2) = \pi^2 / 6 using
+the series,
+
+     \zeta(2) = 1 + 1/2^2 + 1/3^2 + 1/4^2 + ...
+
+After N terms the error in the sum is O(1/N), making direct summation
+of the series converge slowly.
+
+     #include <stdio.h>
+     #include <gsl/gsl_math.h>
+     #include <gsl/gsl_sum.h>
+
+     #define N 20
+
+     int
+     main (void)
+     {
+       double t[N];
+       double sum_accel, err;
+       double sum = 0;
+       int n;
+
+       gsl_sum_levin_u_workspace * w
+         = gsl_sum_levin_u_alloc (N);
+
+       const double zeta_2 = M_PI * M_PI / 6.0;
+
+       /* terms for zeta(2) = \sum_{n=1}^{\infty} 1/n^2 */
+
+       for (n = 0; n < N; n++)
+         {
+           double np1 = n + 1.0;
+           t[n] = 1.0 / (np1 * np1);
+           sum += t[n];
+         }
+
+       gsl_sum_levin_u_accel (t, N, w, &sum_accel, &err);
+
+       printf ("term-by-term sum = % .16f using %d terms\n",
+               sum, N);
+
+       printf ("term-by-term sum = % .16f using %d terms\n",
+               w->sum_plain, w->terms_used);
+
+       printf ("exact value      = % .16f\n", zeta_2);
+       printf ("accelerated sum  = % .16f using %d terms\n",
+               sum_accel, w->terms_used);
+
+       printf ("estimated error  = % .16f\n", err);
+       printf ("actual error     = % .16f\n",
+               sum_accel - zeta_2);
+
+       gsl_sum_levin_u_free (w);
+       return 0;
+     }
+
+The output below shows that the Levin u-transform is able to obtain an
+estimate of the sum to 1 part in 10^10 using the first eleven terms of
+the series.  The error estimate returned by the function is also
+accurate, giving the correct number of significant digits.
+
+     $ ./a.out
+     term-by-term sum =  1.5961632439130233 using 20 terms
+     term-by-term sum =  1.5759958390005426 using 13 terms
+     exact value      =  1.6449340668482264
+     accelerated sum  =  1.6449340668166479 using 13 terms
+     estimated error  =  0.0000000000508580
+     actual error     = -0.0000000000315785
+
+Note that a direct summation of this series would require 10^10 terms
+to achieve the same precision as the accelerated sum does in 13 terms.
+
+\1f
+File: gsl-ref.info,  Node: Series Acceleration References,  Prev: Example of accelerating a series,  Up: Series Acceleration
+
+30.4 References and Further Reading
+===================================
+
+The algorithms used by these functions are described in the following
+papers,
+
+     T. Fessler, W.F. Ford, D.A. Smith, HURRY: An acceleration
+     algorithm for scalar sequences and series `ACM Transactions on
+     Mathematical Software', 9(3):346-354, 1983.  and Algorithm 602
+     9(3):355-357, 1983.
+
+The theory of the u-transform was presented by Levin,
+
+     D. Levin, Development of Non-Linear Transformations for Improving
+     Convergence of Sequences, `Intern. J. Computer Math.' B3:371-388,
+     1973.
+
+A review paper on the Levin Transform is available online,
+     Herbert H. H. Homeier, Scalar Levin-Type Sequence Transformations,
+     `http://arxiv.org/abs/math/0005209'.
+
+\1f
+File: gsl-ref.info,  Node: Wavelet Transforms,  Next: Discrete Hankel Transforms,  Prev: Series Acceleration,  Up: Top
+
+31 Wavelet Transforms
+*********************
+
+This chapter describes functions for performing Discrete Wavelet
+Transforms (DWTs).  The library includes wavelets for real data in both
+one and two dimensions.  The wavelet functions are declared in the
+header files `gsl_wavelet.h' and `gsl_wavelet2d.h'.
+
+* Menu:
+
+* DWT Definitions::
+* DWT Initialization::
+* DWT Transform Functions::
+* DWT Examples::
+* DWT References::
+
+\1f
+File: gsl-ref.info,  Node: DWT Definitions,  Next: DWT Initialization,  Up: Wavelet Transforms
+
+31.1 Definitions
+================
+
+The continuous wavelet transform and its inverse are defined by the
+relations,
+
+     w(s,\tau) = \int f(t) * \psi^*_{s,\tau}(t) dt
+
+and,
+
+     f(t) = \int \int_{-\infty}^\infty w(s, \tau) * \psi_{s,\tau}(t) d\tau ds
+
+where the basis functions \psi_{s,\tau} are obtained by scaling and
+translation from a single function, referred to as the "mother wavelet".
+
+   The discrete version of the wavelet transform acts on equally-spaced
+samples, with fixed scaling and translation steps (s, \tau).  The
+frequency and time axes are sampled "dyadically" on scales of 2^j
+through a level parameter j.  The resulting family of functions
+{\psi_{j,n}} constitutes an orthonormal basis for square-integrable
+signals.
+
+   The discrete wavelet transform is an O(N) algorithm, and is also
+referred to as the "fast wavelet transform".
+
+\1f
+File: gsl-ref.info,  Node: DWT Initialization,  Next: DWT Transform Functions,  Prev: DWT Definitions,  Up: Wavelet Transforms
+
+31.2 Initialization
+===================
+
+The `gsl_wavelet' structure contains the filter coefficients defining
+the wavelet and any associated offset parameters.
+
+ -- Function: gsl_wavelet * gsl_wavelet_alloc (const gsl_wavelet_type *
+          T, size_t K)
+     This function allocates and initializes a wavelet object of type
+     T.  The parameter K selects the specific member of the wavelet
+     family.  A null pointer is returned if insufficient memory is
+     available or if a unsupported member is selected.
+
+   The following wavelet types are implemented:
+
+ -- Wavelet: gsl_wavelet_daubechies
+ -- Wavelet: gsl_wavelet_daubechies_centered
+     This is the Daubechies wavelet family of maximum phase with k/2
+     vanishing moments.  The implemented wavelets are k=4, 6, ..., 20,
+     with K even.
+
+ -- Wavelet: gsl_wavelet_haar
+ -- Wavelet: gsl_wavelet_haar_centered
+     This is the Haar wavelet.  The only valid choice of k for the Haar
+     wavelet is k=2.
+
+ -- Wavelet: gsl_wavelet_bspline
+ -- Wavelet: gsl_wavelet_bspline_centered
+     This is the biorthogonal B-spline wavelet family of order (i,j).
+     The implemented values of k = 100*i + j are 103, 105, 202, 204,
+     206, 208, 301, 303, 305 307, 309.
+
+The centered forms of the wavelets align the coefficients of the various
+sub-bands on edges.  Thus the resulting visualization of the
+coefficients of the wavelet transform in the phase plane is easier to
+understand.
+
+ -- Function: const char * gsl_wavelet_name (const gsl_wavelet * W)
+     This function returns a pointer to the name of the wavelet family
+     for W.
+
+ -- Function: void gsl_wavelet_free (gsl_wavelet * W)
+     This function frees the wavelet object W.
+
+   The `gsl_wavelet_workspace' structure contains scratch space of the
+same size as the input data and is used to hold intermediate results
+during the transform.
+
+ -- Function: gsl_wavelet_workspace * gsl_wavelet_workspace_alloc
+          (size_t N)
+     This function allocates a workspace for the discrete wavelet
+     transform.  To perform a one-dimensional transform on N elements,
+     a workspace of size N must be provided.  For two-dimensional
+     transforms of N-by-N matrices it is sufficient to allocate a
+     workspace of size N, since the transform operates on individual
+     rows and columns. A null pointer is returned if insufficient
+     memory is available.
+
+ -- Function: void gsl_wavelet_workspace_free (gsl_wavelet_workspace *
+          WORK)
+     This function frees the allocated workspace WORK.
+
+\1f
+File: gsl-ref.info,  Node: DWT Transform Functions,  Next: DWT Examples,  Prev: DWT Initialization,  Up: Wavelet Transforms
+
+31.3 Transform Functions
+========================
+
+This sections describes the actual functions performing the discrete
+wavelet transform.  Note that the transforms use periodic boundary
+conditions.  If the signal is not periodic in the sample length then
+spurious coefficients will appear at the beginning and end of each level
+of the transform.
+
+* Menu:
+
+* DWT in one dimension::
+* DWT in two dimension::
+
+\1f
+File: gsl-ref.info,  Node: DWT in one dimension,  Next: DWT in two dimension,  Up: DWT Transform Functions
+
+31.3.1 Wavelet transforms in one dimension
+------------------------------------------
+
+ -- Function: int gsl_wavelet_transform (const gsl_wavelet * W, double
+          * DATA, size_t STRIDE, size_t N, gsl_wavelet_direction DIR,
+          gsl_wavelet_workspace * WORK)
+ -- Function: int gsl_wavelet_transform_forward (const gsl_wavelet * W,
+          double * DATA, size_t STRIDE, size_t N, gsl_wavelet_workspace
+          * WORK)
+ -- Function: int gsl_wavelet_transform_inverse (const gsl_wavelet * W,
+          double * DATA, size_t STRIDE, size_t N, gsl_wavelet_workspace
+          * WORK)
+     These functions compute in-place forward and inverse discrete
+     wavelet transforms of length N with stride STRIDE on the array
+     DATA. The length of the transform N is restricted to powers of
+     two.  For the `transform' version of the function the argument DIR
+     can be either `forward' (+1) or `backward' (-1).  A workspace WORK
+     of length N must be provided.
+
+     For the forward transform, the elements of the original array are
+     replaced by the discrete wavelet transform f_i -> w_{j,k} in a
+     packed triangular storage layout, where J is the index of the level
+     j = 0 ... J-1 and K is the index of the coefficient within each
+     level, k = 0 ... (2^j)-1.  The total number of levels is J =
+     \log_2(n).  The output data has the following form,
+
+          (s_{-1,0}, d_{0,0}, d_{1,0}, d_{1,1}, d_{2,0}, ...,
+            d_{j,k}, ..., d_{J-1,2^{J-1}-1})
+
+     where the first element is the smoothing coefficient s_{-1,0},
+     followed by the detail coefficients d_{j,k} for each level j.  The
+     backward transform inverts these coefficients to obtain the
+     original data.
+
+     These functions return a status of `GSL_SUCCESS' upon successful
+     completion.  `GSL_EINVAL' is returned if N is not an integer power
+     of 2 or if insufficient workspace is provided.
+
+\1f
+File: gsl-ref.info,  Node: DWT in two dimension,  Prev: DWT in one dimension,  Up: DWT Transform Functions
+
+31.3.2 Wavelet transforms in two dimension
+------------------------------------------
+
+The library provides functions to perform two-dimensional discrete
+wavelet transforms on square matrices.  The matrix dimensions must be an
+integer power of two.  There are two possible orderings of the rows and
+columns in the two-dimensional wavelet transform, referred to as the
+"standard" and "non-standard" forms.
+
+   The "standard" transform performs a complete discrete wavelet
+transform on the rows of the matrix, followed by a separate complete
+discrete wavelet transform on the columns of the resulting
+row-transformed matrix.  This procedure uses the same ordering as a
+two-dimensional Fourier transform.
+
+   The "non-standard" transform is performed in interleaved passes on
+the rows and columns of the matrix for each level of the transform.  The
+first level of the transform is applied to the matrix rows, and then to
+the matrix columns.  This procedure is then repeated across the rows and
+columns of the data for the subsequent levels of the transform, until
+the full discrete wavelet transform is complete.  The non-standard form
+of the discrete wavelet transform is typically used in image analysis.
+
+   The functions described in this section are declared in the header
+file `gsl_wavelet2d.h'.
+
+ -- Function: int gsl_wavelet2d_transform (const gsl_wavelet * W,
+          double * DATA, size_t TDA, size_t SIZE1, size_t SIZE2,
+          gsl_wavelet_direction DIR, gsl_wavelet_workspace * WORK)
+ -- Function: int gsl_wavelet2d_transform_forward (const gsl_wavelet *
+          W, double * DATA, size_t TDA, size_t SIZE1, size_t SIZE2,
+          gsl_wavelet_workspace * WORK)
+ -- Function: int gsl_wavelet2d_transform_inverse (const gsl_wavelet *
+          W, double * DATA, size_t TDA, size_t SIZE1, size_t SIZE2,
+          gsl_wavelet_workspace * WORK)
+     These functions compute two-dimensional in-place forward and
+     inverse discrete wavelet transforms in standard form on the array
+     DATA stored in row-major form with dimensions SIZE1 and SIZE2 and
+     physical row length TDA.  The dimensions must be equal (square
+     matrix) and are restricted to powers of two.  For the `transform'
+     version of the function the argument DIR can be either `forward'
+     (+1) or `backward' (-1).  A workspace WORK of the appropriate size
+     must be provided.  On exit, the appropriate elements of the array
+     DATA are replaced by their two-dimensional wavelet transform.
+
+     The functions return a status of `GSL_SUCCESS' upon successful
+     completion.  `GSL_EINVAL' is returned if SIZE1 and SIZE2 are not
+     equal and integer powers of 2, or if insufficient workspace is
+     provided.
+
+ -- Function: int gsl_wavelet2d_transform_matrix (const gsl_wavelet *
+          W, gsl_matrix * M, gsl_wavelet_direction DIR,
+          gsl_wavelet_workspace * WORK)
+ -- Function: int gsl_wavelet2d_transform_matrix_forward (const
+          gsl_wavelet * W, gsl_matrix * M, gsl_wavelet_workspace * WORK)
+ -- Function: int gsl_wavelet2d_transform_matrix_inverse (const
+          gsl_wavelet * W, gsl_matrix * M, gsl_wavelet_workspace * WORK)
+     These functions compute the two-dimensional in-place wavelet
+     transform on a matrix A.
+
+ -- Function: int gsl_wavelet2d_nstransform (const gsl_wavelet * W,
+          double * DATA, size_t TDA, size_t SIZE1, size_t SIZE2,
+          gsl_wavelet_direction DIR, gsl_wavelet_workspace * WORK)
+ -- Function: int gsl_wavelet2d_nstransform_forward (const gsl_wavelet
+          * W, double * DATA, size_t TDA, size_t SIZE1, size_t SIZE2,
+          gsl_wavelet_workspace * WORK)
+ -- Function: int gsl_wavelet2d_nstransform_inverse (const gsl_wavelet
+          * W, double * DATA, size_t TDA, size_t SIZE1, size_t SIZE2,
+          gsl_wavelet_workspace * WORK)
+     These functions compute the two-dimensional wavelet transform in
+     non-standard form.
+
+ -- Function: int gsl_wavelet2d_nstransform_matrix (const gsl_wavelet *
+          W, gsl_matrix * M, gsl_wavelet_direction DIR,
+          gsl_wavelet_workspace * WORK)
+ -- Function: int gsl_wavelet2d_nstransform_matrix_forward (const
+          gsl_wavelet * W, gsl_matrix * M, gsl_wavelet_workspace * WORK)
+ -- Function: int gsl_wavelet2d_nstransform_matrix_inverse (const
+          gsl_wavelet * W, gsl_matrix * M, gsl_wavelet_workspace * WORK)
+     These functions compute the non-standard form of the
+     two-dimensional in-place wavelet transform on a matrix A.
+
+\1f
+File: gsl-ref.info,  Node: DWT Examples,  Next: DWT References,  Prev: DWT Transform Functions,  Up: Wavelet Transforms
+
+31.4 Examples
+=============
+
+The following program demonstrates the use of the one-dimensional
+wavelet transform functions.  It computes an approximation to an input
+signal (of length 256) using the 20 largest components of the wavelet
+transform, while setting the others to zero.
+
+     #include <stdio.h>
+     #include <math.h>
+     #include <gsl/gsl_sort.h>
+     #include <gsl/gsl_wavelet.h>
+
+     int
+     main (int argc, char **argv)
+     {
+       int i, n = 256, nc = 20;
+       double *data = malloc (n * sizeof (double));
+       double *abscoeff = malloc (n * sizeof (double));
+       size_t *p = malloc (n * sizeof (size_t));
+
+       FILE * f;
+       gsl_wavelet *w;
+       gsl_wavelet_workspace *work;
+
+       w = gsl_wavelet_alloc (gsl_wavelet_daubechies, 4);
+       work = gsl_wavelet_workspace_alloc (n);
+
+       f = fopen (argv[1], "r");
+       for (i = 0; i < n; i++)
+         {
+           fscanf (f, "%lg", &data[i]);
+         }
+       fclose (f);
+
+       gsl_wavelet_transform_forward (w, data, 1, n, work);
+
+       for (i = 0; i < n; i++)
+         {
+           abscoeff[i] = fabs (data[i]);
+         }
+
+       gsl_sort_index (p, abscoeff, 1, n);
+
+       for (i = 0; (i + nc) < n; i++)
+         data[p[i]] = 0;
+
+       gsl_wavelet_transform_inverse (w, data, 1, n, work);
+
+       for (i = 0; i < n; i++)
+         {
+           printf ("%g\n", data[i]);
+         }
+
+       gsl_wavelet_free (w);
+       gsl_wavelet_workspace_free (work);
+
+       free (data);
+       free (abscoeff);
+       free (p);
+       return 0;
+     }
+
+The output can be used with the GNU plotutils `graph' program,
+
+     $ ./a.out ecg.dat > dwt.dat
+     $ graph -T ps -x 0 256 32 -h 0.3 -a dwt.dat > dwt.ps
+
+\1f
+File: gsl-ref.info,  Node: DWT References,  Prev: DWT Examples,  Up: Wavelet Transforms
+
+31.5 References and Further Reading
+===================================
+
+The mathematical background to wavelet transforms is covered in the
+original lectures by Daubechies,
+
+     Ingrid Daubechies.  Ten Lectures on Wavelets.  `CBMS-NSF Regional
+     Conference Series in Applied Mathematics' (1992), SIAM, ISBN
+     0898712742.
+
+An easy to read introduction to the subject with an emphasis on the
+application of the wavelet transform in various branches of science is,
+
+     Paul S. Addison. `The Illustrated Wavelet Transform Handbook'.
+     Institute of Physics Publishing (2002), ISBN 0750306920.
+
+For extensive coverage of signal analysis by wavelets, wavelet packets
+and local cosine bases see,
+
+     S. G. Mallat.  `A wavelet tour of signal processing' (Second
+     edition). Academic Press (1999), ISBN 012466606X.
+
+The concept of multiresolution analysis underlying the wavelet transform
+is described in,
+
+     S. G. Mallat.  Multiresolution Approximations and Wavelet
+     Orthonormal Bases of L^2(R).  `Transactions of the American
+     Mathematical Society', 315(1), 1989, 69-87.
+
+     S. G. Mallat.  A Theory for Multiresolution Signal
+     Decomposition--The Wavelet Representation.  `IEEE Transactions on
+     Pattern Analysis and Machine Intelligence', 11, 1989, 674-693.
+
+The coefficients for the individual wavelet families implemented by the
+library can be found in the following papers,
+
+     I. Daubechies.  Orthonormal Bases of Compactly Supported Wavelets.
+     `Communications on Pure and Applied Mathematics', 41 (1988)
+     909-996.
+
+     A. Cohen, I. Daubechies, and J.-C. Feauveau.  Biorthogonal Bases
+     of Compactly Supported Wavelets.  `Communications on Pure and
+     Applied Mathematics', 45 (1992) 485-560.
+
+The PhysioNet archive of physiological datasets can be found online at
+`http://www.physionet.org/' and is described in the following paper,
+
+     Goldberger et al.  PhysioBank, PhysioToolkit, and PhysioNet:
+     Components of a New Research Resource for Complex Physiologic
+     Signals.  `Circulation' 101(23):e215-e220 2000.
+
+\1f
+File: gsl-ref.info,  Node: Discrete Hankel Transforms,  Next: One dimensional Root-Finding,  Prev: Wavelet Transforms,  Up: Top
+
+32 Discrete Hankel Transforms
+*****************************
+
+This chapter describes functions for performing Discrete Hankel
+Transforms (DHTs).  The functions are declared in the header file
+`gsl_dht.h'.
+
+* Menu:
+
+* Discrete Hankel Transform Definition::
+* Discrete Hankel Transform Functions::
+* Discrete Hankel Transform References::
+
+\1f
+File: gsl-ref.info,  Node: Discrete Hankel Transform Definition,  Next: Discrete Hankel Transform Functions,  Up: Discrete Hankel Transforms
+
+32.1 Definitions
+================
+
+The discrete Hankel transform acts on a vector of sampled data, where
+the samples are assumed to have been taken at points related to the
+zeroes of a Bessel function of fixed order; compare this to the case of
+the discrete Fourier transform, where samples are taken at points
+related to the zeroes of the sine or cosine function.
+
+   Specifically, let f(t) be a function on the unit interval and
+j_(\nu,m) the m-th zero of the Bessel function J_\nu(x).  Then the
+finite \nu-Hankel transform of f(t) is defined to be the set of numbers
+g_m given by,
+     g_m = \int_0^1 t dt J_\nu(j_(\nu,m)t) f(t),
+
+so that,
+     f(t) = \sum_{m=1}^\infty (2 J_\nu(j_(\nu,m)t) / J_(\nu+1)(j_(\nu,m))^2) g_m.
+
+Suppose that f is band-limited in the sense that g_m=0 for m > M. Then
+we have the following fundamental sampling theorem.
+     g_m = (2 / j_(\nu,M)^2)
+           \sum_{k=1}^{M-1} f(j_(\nu,k)/j_(\nu,M))
+               (J_\nu(j_(\nu,m) j_(\nu,k) / j_(\nu,M)) / J_(\nu+1)(j_(\nu,k))^2).
+
+It is this discrete expression which defines the discrete Hankel
+transform. The kernel in the summation above defines the matrix of the
+\nu-Hankel transform of size M-1.  The coefficients of this matrix,
+being dependent on \nu and M, must be precomputed and stored; the
+`gsl_dht' object encapsulates this data.  The allocation function
+`gsl_dht_alloc' returns a `gsl_dht' object which must be properly
+initialized with `gsl_dht_init' before it can be used to perform
+transforms on data sample vectors, for fixed \nu and M, using the
+`gsl_dht_apply' function. The implementation allows a scaling of the
+fundamental interval, for convenience, so that one can assume the
+function is defined on the interval [0,X], rather than the unit
+interval.
+
+   Notice that by assumption f(t) vanishes at the endpoints of the
+interval, consistent with the inversion formula and the sampling
+formula given above. Therefore, this transform corresponds to an
+orthogonal expansion in eigenfunctions of the Dirichlet problem for the
+Bessel differential equation.
+
+\1f
+File: gsl-ref.info,  Node: Discrete Hankel Transform Functions,  Next: Discrete Hankel Transform References,  Prev: Discrete Hankel Transform Definition,  Up: Discrete Hankel Transforms
+
+32.2 Functions
+==============
+
+ -- Function: gsl_dht * gsl_dht_alloc (size_t SIZE)
+     This function allocates a Discrete Hankel transform object of size
+     SIZE.
+
+ -- Function: int gsl_dht_init (gsl_dht * T, double NU, double XMAX)
+     This function initializes the transform T for the given values of
+     NU and XMAX.
+
+ -- Function: gsl_dht * gsl_dht_new (size_t SIZE, double NU, double
+          XMAX)
+     This function allocates a Discrete Hankel transform object of size
+     SIZE and initializes it for the given values of NU and XMAX.
+
+ -- Function: void gsl_dht_free (gsl_dht * T)
+     This function frees the transform T.
+
+ -- Function: int gsl_dht_apply (const gsl_dht * T, double * F_IN,
+          double * F_OUT)
+     This function applies the transform T to the array F_IN whose size
+     is equal to the size of the transform.  The result is stored in
+     the array F_OUT which must be of the same length.
+
+     Applying this function to its output gives the original data
+     multiplied by (1/j_(\nu,M))^2, up to numerical errors.
+
+ -- Function: double gsl_dht_x_sample (const gsl_dht * T, int N)
+     This function returns the value of the N-th sample point in the
+     unit interval, (j_{\nu,n+1}/j_{\nu,M}) X. These are the points
+     where the function f(t) is assumed to be sampled.
+
+ -- Function: double gsl_dht_k_sample (const gsl_dht * T, int N)
+     This function returns the value of the N-th sample point in
+     "k-space", j_{\nu,n+1}/X.
+
+\1f
+File: gsl-ref.info,  Node: Discrete Hankel Transform References,  Prev: Discrete Hankel Transform Functions,  Up: Discrete Hankel Transforms
+
+32.3 References and Further Reading
+===================================
+
+The algorithms used by these functions are described in the following
+papers,
+
+     H. Fisk Johnson, Comp. Phys. Comm. 43, 181 (1987).
+
+     D. Lemoine, J. Chem. Phys. 101, 3936 (1994).
+
+\1f
+File: gsl-ref.info,  Node: One dimensional Root-Finding,  Next: One dimensional Minimization,  Prev: Discrete Hankel Transforms,  Up: Top
+
+33 One dimensional Root-Finding
+*******************************
+
+This chapter describes routines for finding roots of arbitrary
+one-dimensional functions.  The library provides low level components
+for a variety of iterative solvers and convergence tests.  These can be
+combined by the user to achieve the desired solution, with full access
+to the intermediate steps of the iteration.  Each class of methods uses
+the same framework, so that you can switch between solvers at runtime
+without needing to recompile your program.  Each instance of a solver
+keeps track of its own state, allowing the solvers to be used in
+multi-threaded programs.
+
+   The header file `gsl_roots.h' contains prototypes for the root
+finding functions and related declarations.
+
+* Menu:
+
+* Root Finding Overview::
+* Root Finding Caveats::
+* Initializing the Solver::
+* Providing the function to solve::
+* Search Bounds and Guesses::
+* Root Finding Iteration::
+* Search Stopping Parameters::
+* Root Bracketing Algorithms::
+* Root Finding Algorithms using Derivatives::
+* Root Finding Examples::
+* Root Finding References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Root Finding Overview,  Next: Root Finding Caveats,  Up: One dimensional Root-Finding
+
+33.1 Overview
+=============
+
+One-dimensional root finding algorithms can be divided into two classes,
+"root bracketing" and "root polishing".  Algorithms which proceed by
+bracketing a root are guaranteed to converge.  Bracketing algorithms
+begin with a bounded region known to contain a root.  The size of this
+bounded region is reduced, iteratively, until it encloses the root to a
+desired tolerance.  This provides a rigorous error estimate for the
+location of the root.
+
+   The technique of "root polishing" attempts to improve an initial
+guess to the root.  These algorithms converge only if started "close
+enough" to a root, and sacrifice a rigorous error bound for speed.  By
+approximating the behavior of a function in the vicinity of a root they
+attempt to find a higher order improvement of an initial guess.  When
+the behavior of the function is compatible with the algorithm and a good
+initial guess is available a polishing algorithm can provide rapid
+convergence.
+
+   In GSL both types of algorithm are available in similar frameworks.
+The user provides a high-level driver for the algorithms, and the
+library provides the individual functions necessary for each of the
+steps.  There are three main phases of the iteration.  The steps are,
+
+   * initialize solver state, S, for algorithm T
+
+   * update S using the iteration T
+
+   * test S for convergence, and repeat iteration if necessary
+
+The state for bracketing solvers is held in a `gsl_root_fsolver'
+struct.  The updating procedure uses only function evaluations (not
+derivatives).  The state for root polishing solvers is held in a
+`gsl_root_fdfsolver' struct.  The updates require both the function and
+its derivative (hence the name `fdf') to be supplied by the user.
+
+\1f
+File: gsl-ref.info,  Node: Root Finding Caveats,  Next: Initializing the Solver,  Prev: Root Finding Overview,  Up: One dimensional Root-Finding
+
+33.2 Caveats
+============
+
+Note that root finding functions can only search for one root at a time.
+When there are several roots in the search area, the first root to be
+found will be returned; however it is difficult to predict which of the
+roots this will be. _In most cases, no error will be reported if you
+try to find a root in an area where there is more than one._
+
+   Care must be taken when a function may have a multiple root (such as
+f(x) = (x-x_0)^2 or f(x) = (x-x_0)^3).  It is not possible to use
+root-bracketing algorithms on even-multiplicity roots.  For these
+algorithms the initial interval must contain a zero-crossing, where the
+function is negative at one end of the interval and positive at the
+other end.  Roots with even-multiplicity do not cross zero, but only
+touch it instantaneously.  Algorithms based on root bracketing will
+still work for odd-multiplicity roots (e.g. cubic, quintic, ...).  Root
+polishing algorithms generally work with higher multiplicity roots, but
+at a reduced rate of convergence.  In these cases the "Steffenson
+algorithm" can be used to accelerate the convergence of multiple roots.
+
+   While it is not absolutely required that f have a root within the
+search region, numerical root finding functions should not be used
+haphazardly to check for the _existence_ of roots.  There are better
+ways to do this.  Because it is easy to create situations where
+numerical root finders can fail, it is a bad idea to throw a root
+finder at a function you do not know much about.  In general it is best
+to examine the function visually by plotting before searching for a
+root.
+
+\1f
+File: gsl-ref.info,  Node: Initializing the Solver,  Next: Providing the function to solve,  Prev: Root Finding Caveats,  Up: One dimensional Root-Finding
+
+33.3 Initializing the Solver
+============================
+
+ -- Function: gsl_root_fsolver * gsl_root_fsolver_alloc (const
+          gsl_root_fsolver_type * T)
+     This function returns a pointer to a newly allocated instance of a
+     solver of type T.  For example, the following code creates an
+     instance of a bisection solver,
+
+          const gsl_root_fsolver_type * T
+            = gsl_root_fsolver_bisection;
+          gsl_root_fsolver * s
+            = gsl_root_fsolver_alloc (T);
+
+     If there is insufficient memory to create the solver then the
+     function returns a null pointer and the error handler is invoked
+     with an error code of `GSL_ENOMEM'.
+
+ -- Function: gsl_root_fdfsolver * gsl_root_fdfsolver_alloc (const
+          gsl_root_fdfsolver_type * T)
+     This function returns a pointer to a newly allocated instance of a
+     derivative-based solver of type T.  For example, the following
+     code creates an instance of a Newton-Raphson solver,
+
+          const gsl_root_fdfsolver_type * T
+            = gsl_root_fdfsolver_newton;
+          gsl_root_fdfsolver * s
+            = gsl_root_fdfsolver_alloc (T);
+
+     If there is insufficient memory to create the solver then the
+     function returns a null pointer and the error handler is invoked
+     with an error code of `GSL_ENOMEM'.
+
+ -- Function: int gsl_root_fsolver_set (gsl_root_fsolver * S,
+          gsl_function * F, double X_LOWER, double X_UPPER)
+     This function initializes, or reinitializes, an existing solver S
+     to use the function F and the initial search interval [X_LOWER,
+     X_UPPER].
+
+ -- Function: int gsl_root_fdfsolver_set (gsl_root_fdfsolver * S,
+          gsl_function_fdf * FDF, double ROOT)
+     This function initializes, or reinitializes, an existing solver S
+     to use the function and derivative FDF and the initial guess ROOT.
+
+ -- Function: void gsl_root_fsolver_free (gsl_root_fsolver * S)
+ -- Function: void gsl_root_fdfsolver_free (gsl_root_fdfsolver * S)
+     These functions free all the memory associated with the solver S.
+
+ -- Function: const char * gsl_root_fsolver_name (const
+          gsl_root_fsolver * S)
+ -- Function: const char * gsl_root_fdfsolver_name (const
+          gsl_root_fdfsolver * S)
+     These functions return a pointer to the name of the solver.  For
+     example,
+
+          printf ("s is a '%s' solver\n",
+                  gsl_root_fsolver_name (s));
+
+     would print something like `s is a 'bisection' solver'.
+
+\1f
+File: gsl-ref.info,  Node: Providing the function to solve,  Next: Search Bounds and Guesses,  Prev: Initializing the Solver,  Up: One dimensional Root-Finding
+
+33.4 Providing the function to solve
+====================================
+
+You must provide a continuous function of one variable for the root
+finders to operate on, and, sometimes, its first derivative.  In order
+to allow for general parameters the functions are defined by the
+following data types:
+
+ -- Data Type: gsl_function
+     This data type defines a general function with parameters.
+
+    `double (* function) (double X, void * PARAMS)'
+          this function should return the value f(x,params) for
+          argument X and parameters PARAMS
+
+    `void * params'
+          a pointer to the parameters of the function
+
+   Here is an example for the general quadratic function,
+
+     f(x) = a x^2 + b x + c
+
+with a = 3, b = 2, c = 1.  The following code defines a `gsl_function'
+`F' which you could pass to a root finder as a function pointer:
+
+     struct my_f_params { double a; double b; double c; };
+
+     double
+     my_f (double x, void * p) {
+        struct my_f_params * params
+          = (struct my_f_params *)p;
+        double a = (params->a);
+        double b = (params->b);
+        double c = (params->c);
+
+        return  (a * x + b) * x + c;
+     }
+
+     gsl_function F;
+     struct my_f_params params = { 3.0, 2.0, 1.0 };
+
+     F.function = &my_f;
+     F.params = &params;
+
+The function f(x) can be evaluated using the macro `GSL_FN_EVAL(&F,x)'
+defined in `gsl_math.h'.
+
+ -- Data Type: gsl_function_fdf
+     This data type defines a general function with parameters and its
+     first derivative.
+
+    `double (* f) (double X, void * PARAMS)'
+          this function should return the value of f(x,params) for
+          argument X and parameters PARAMS
+
+    `double (* df) (double X, void * PARAMS)'
+          this function should return the value of the derivative of F
+          with respect to X, f'(x,params), for argument X and
+          parameters PARAMS
+
+    `void (* fdf) (double X, void * PARAMS, double * F, double * DF)'
+          this function should set the values of the function F to
+          f(x,params) and its derivative DF to f'(x,params) for
+          argument X and parameters PARAMS.  This function provides an
+          optimization of the separate functions for f(x) and f'(x)--it
+          is always faster to compute the function and its derivative
+          at the same time.
+
+    `void * params'
+          a pointer to the parameters of the function
+
+   Here is an example where f(x) = 2\exp(2x):
+
+     double
+     my_f (double x, void * params)
+     {
+        return exp (2 * x);
+     }
+
+     double
+     my_df (double x, void * params)
+     {
+        return 2 * exp (2 * x);
+     }
+
+     void
+     my_fdf (double x, void * params,
+             double * f, double * df)
+     {
+        double t = exp (2 * x);
+
+        *f = t;
+        *df = 2 * t;   /* uses existing value */
+     }
+
+     gsl_function_fdf FDF;
+
+     FDF.f = &my_f;
+     FDF.df = &my_df;
+     FDF.fdf = &my_fdf;
+     FDF.params = 0;
+
+The function f(x) can be evaluated using the macro
+`GSL_FN_FDF_EVAL_F(&FDF,x)' and the derivative f'(x) can be evaluated
+using the macro `GSL_FN_FDF_EVAL_DF(&FDF,x)'.  Both the function y =
+f(x) and its derivative dy = f'(x) can be evaluated at the same time
+using the macro `GSL_FN_FDF_EVAL_F_DF(&FDF,x,y,dy)'.  The macro stores
+f(x) in its Y argument and f'(x) in its DY argument--both of these
+should be pointers to `double'.
+
+\1f
+File: gsl-ref.info,  Node: Search Bounds and Guesses,  Next: Root Finding Iteration,  Prev: Providing the function to solve,  Up: One dimensional Root-Finding
+
+33.5 Search Bounds and Guesses
+==============================
+
+You provide either search bounds or an initial guess; this section
+explains how search bounds and guesses work and how function arguments
+control them.
+
+   A guess is simply an x value which is iterated until it is within
+the desired precision of a root.  It takes the form of a `double'.
+
+   Search bounds are the endpoints of an interval which is iterated
+until the length of the interval is smaller than the requested
+precision.  The interval is defined by two values, the lower limit and
+the upper limit.  Whether the endpoints are intended to be included in
+the interval or not depends on the context in which the interval is
+used.
+
+\1f
+File: gsl-ref.info,  Node: Root Finding Iteration,  Next: Search Stopping Parameters,  Prev: Search Bounds and Guesses,  Up: One dimensional Root-Finding
+
+33.6 Iteration
+==============
+
+The following functions drive the iteration of each algorithm.  Each
+function performs one iteration to update the state of any solver of the
+corresponding type.  The same functions work for all solvers so that
+different methods can be substituted at runtime without modifications to
+the code.
+
+ -- Function: int gsl_root_fsolver_iterate (gsl_root_fsolver * S)
+ -- Function: int gsl_root_fdfsolver_iterate (gsl_root_fdfsolver * S)
+     These functions perform a single iteration of the solver S.  If the
+     iteration encounters an unexpected problem then an error code will
+     be returned,
+
+    `GSL_EBADFUNC'
+          the iteration encountered a singular point where the function
+          or its derivative evaluated to `Inf' or `NaN'.
+
+    `GSL_EZERODIV'
+          the derivative of the function vanished at the iteration
+          point, preventing the algorithm from continuing without a
+          division by zero.
+
+   The solver maintains a current best estimate of the root at all
+times.  The bracketing solvers also keep track of the current best
+interval bounding the root.  This information can be accessed with the
+following auxiliary functions,
+
+ -- Function: double gsl_root_fsolver_root (const gsl_root_fsolver * S)
+ -- Function: double gsl_root_fdfsolver_root (const gsl_root_fdfsolver
+          * S)
+     These functions return the current estimate of the root for the
+     solver S.
+
+ -- Function: double gsl_root_fsolver_x_lower (const gsl_root_fsolver *
+          S)
+ -- Function: double gsl_root_fsolver_x_upper (const gsl_root_fsolver *
+          S)
+     These functions return the current bracketing interval for the
+     solver S.
+
+\1f
+File: gsl-ref.info,  Node: Search Stopping Parameters,  Next: Root Bracketing Algorithms,  Prev: Root Finding Iteration,  Up: One dimensional Root-Finding
+
+33.7 Search Stopping Parameters
+===============================
+
+A root finding procedure should stop when one of the following
+conditions is true:
+
+   * A root has been found to within the user-specified precision.
+
+   * A user-specified maximum number of iterations has been reached.
+
+   * An error has occurred.
+
+The handling of these conditions is under user control.  The functions
+below allow the user to test the precision of the current result in
+several standard ways.
+
+ -- Function: int gsl_root_test_interval (double X_LOWER, double
+          X_UPPER, double EPSABS, double EPSREL)
+     This function tests for the convergence of the interval [X_LOWER,
+     X_UPPER] with absolute error EPSABS and relative error EPSREL.
+     The test returns `GSL_SUCCESS' if the following condition is
+     achieved,
+
+          |a - b| < epsabs + epsrel min(|a|,|b|)
+
+     when the interval x = [a,b] does not include the origin.  If the
+     interval includes the origin then \min(|a|,|b|) is replaced by
+     zero (which is the minimum value of |x| over the interval).  This
+     ensures that the relative error is accurately estimated for roots
+     close to the origin.
+
+     This condition on the interval also implies that any estimate of
+     the root r in the interval satisfies the same condition with
+     respect to the true root r^*,
+
+          |r - r^*| < epsabs + epsrel r^*
+
+     assuming that the true root r^* is contained within the interval.
+
+ -- Function: int gsl_root_test_delta (double X1, double X0, double
+          EPSABS, double EPSREL)
+     This function tests for the convergence of the sequence ..., X0,
+     X1 with absolute error EPSABS and relative error EPSREL.  The test
+     returns `GSL_SUCCESS' if the following condition is achieved,
+
+          |x_1 - x_0| < epsabs + epsrel |x_1|
+
+     and returns `GSL_CONTINUE' otherwise.
+
+ -- Function: int gsl_root_test_residual (double F, double EPSABS)
+     This function tests the residual value F against the absolute
+     error bound EPSABS.  The test returns `GSL_SUCCESS' if the
+     following condition is achieved,
+
+          |f| < epsabs
+
+     and returns `GSL_CONTINUE' otherwise.  This criterion is suitable
+     for situations where the precise location of the root, x, is
+     unimportant provided a value can be found where the residual,
+     |f(x)|, is small enough.
+
+\1f
+File: gsl-ref.info,  Node: Root Bracketing Algorithms,  Next: Root Finding Algorithms using Derivatives,  Prev: Search Stopping Parameters,  Up: One dimensional Root-Finding
+
+33.8 Root Bracketing Algorithms
+===============================
+
+The root bracketing algorithms described in this section require an
+initial interval which is guaranteed to contain a root--if a and b are
+the endpoints of the interval then f(a) must differ in sign from f(b).
+This ensures that the function crosses zero at least once in the
+interval.  If a valid initial interval is used then these algorithm
+cannot fail, provided the function is well-behaved.
+
+   Note that a bracketing algorithm cannot find roots of even degree,
+since these do not cross the x-axis.
+
+ -- Solver: gsl_root_fsolver_bisection
+     The "bisection algorithm" is the simplest method of bracketing the
+     roots of a function.   It is the slowest algorithm provided by the
+     library, with linear convergence.
+
+     On each iteration, the interval is bisected and the value of the
+     function at the midpoint is calculated.  The sign of this value is
+     used to determine which half of the interval does not contain a
+     root.  That half is discarded to give a new, smaller interval
+     containing the root.  This procedure can be continued indefinitely
+     until the interval is sufficiently small.
+
+     At any time the current estimate of the root is taken as the
+     midpoint of the interval.
+
+
+ -- Solver: gsl_root_fsolver_falsepos
+     The "false position algorithm" is a method of finding roots based
+     on linear interpolation.  Its convergence is linear, but it is
+     usually faster than bisection.
+
+     On each iteration a line is drawn between the endpoints (a,f(a))
+     and (b,f(b)) and the point where this line crosses the x-axis
+     taken as a "midpoint".  The value of the function at this point is
+     calculated and its sign is used to determine which side of the
+     interval does not contain a root.  That side is discarded to give a
+     new, smaller interval containing the root.  This procedure can be
+     continued indefinitely until the interval is sufficiently small.
+
+     The best estimate of the root is taken from the linear
+     interpolation of the interval on the current iteration.
+
+
+ -- Solver: gsl_root_fsolver_brent
+     The "Brent-Dekker method" (referred to here as "Brent's method")
+     combines an interpolation strategy with the bisection algorithm.
+     This produces a fast algorithm which is still robust.
+
+     On each iteration Brent's method approximates the function using an
+     interpolating curve.  On the first iteration this is a linear
+     interpolation of the two endpoints.  For subsequent iterations the
+     algorithm uses an inverse quadratic fit to the last three points,
+     for higher accuracy.  The intercept of the interpolating curve
+     with the x-axis is taken as a guess for the root.  If it lies
+     within the bounds of the current interval then the interpolating
+     point is accepted, and used to generate a smaller interval.  If
+     the interpolating point is not accepted then the algorithm falls
+     back to an ordinary bisection step.
+
+     The best estimate of the root is taken from the most recent
+     interpolation or bisection.
+
+\1f
+File: gsl-ref.info,  Node: Root Finding Algorithms using Derivatives,  Next: Root Finding Examples,  Prev: Root Bracketing Algorithms,  Up: One dimensional Root-Finding
+
+33.9 Root Finding Algorithms using Derivatives
+==============================================
+
+The root polishing algorithms described in this section require an
+initial guess for the location of the root.  There is no absolute
+guarantee of convergence--the function must be suitable for this
+technique and the initial guess must be sufficiently close to the root
+for it to work.  When these conditions are satisfied then convergence is
+quadratic.
+
+   These algorithms make use of both the function and its derivative.
+
+ -- Derivative Solver: gsl_root_fdfsolver_newton
+     Newton's Method is the standard root-polishing algorithm.  The
+     algorithm begins with an initial guess for the location of the
+     root.  On each iteration, a line tangent to the function f is
+     drawn at that position.  The point where this line crosses the
+     x-axis becomes the new guess.  The iteration is defined by the
+     following sequence,
+
+          x_{i+1} = x_i - f(x_i)/f'(x_i)
+
+     Newton's method converges quadratically for single roots, and
+     linearly for multiple roots.
+
+
+ -- Derivative Solver: gsl_root_fdfsolver_secant
+     The "secant method" is a simplified version of Newton's method
+     which does not require the computation of the derivative on every
+     step.
+
+     On its first iteration the algorithm begins with Newton's method,
+     using the derivative to compute a first step,
+
+          x_1 = x_0 - f(x_0)/f'(x_0)
+
+     Subsequent iterations avoid the evaluation of the derivative by
+     replacing it with a numerical estimate, the slope of the line
+     through the previous two points,
+
+          x_{i+1} = x_i f(x_i) / f'_{est} where
+           f'_{est} = (f(x_i) - f(x_{i-1})/(x_i - x_{i-1})
+
+     When the derivative does not change significantly in the vicinity
+     of the root the secant method gives a useful saving.
+     Asymptotically the secant method is faster than Newton's method
+     whenever the cost of evaluating the derivative is more than 0.44
+     times the cost of evaluating the function itself.  As with all
+     methods of computing a numerical derivative the estimate can
+     suffer from cancellation errors if the separation of the points
+     becomes too small.
+
+     On single roots, the method has a convergence of order (1 + \sqrt
+     5)/2 (approximately 1.62).  It converges linearly for multiple
+     roots.
+
+
+ -- Derivative Solver: gsl_root_fdfsolver_steffenson
+     The "Steffenson Method"(1) provides the fastest convergence of all
+     the routines.  It combines the basic Newton algorithm with an
+     Aitken "delta-squared" acceleration.  If the Newton iterates are
+     x_i then the acceleration procedure generates a new sequence R_i,
+
+          R_i = x_i - (x_{i+1} - x_i)^2 / (x_{i+2} - 2 x_{i+1} + x_{i})
+
+     which converges faster than the original sequence under reasonable
+     conditions.  The new sequence requires three terms before it can
+     produce its first value so the method returns accelerated values
+     on the second and subsequent iterations.  On the first iteration
+     it returns the ordinary Newton estimate.  The Newton iterate is
+     also returned if the denominator of the acceleration term ever
+     becomes zero.
+
+     As with all acceleration procedures this method can become
+     unstable if the function is not well-behaved.
+
+   ---------- Footnotes ----------
+
+   (1) J.F. Steffensen (1873-1961). The spelling used in the name of
+the function is slightly incorrect, but has been preserved to avoid
+incompatibility.
+
+\1f
+File: gsl-ref.info,  Node: Root Finding Examples,  Next: Root Finding References and Further Reading,  Prev: Root Finding Algorithms using Derivatives,  Up: One dimensional Root-Finding
+
+33.10 Examples
+==============
+
+For any root finding algorithm we need to prepare the function to be
+solved.  For this example we will use the general quadratic equation
+described earlier.  We first need a header file (`demo_fn.h') to define
+the function parameters,
+
+     struct quadratic_params
+       {
+         double a, b, c;
+       };
+
+     double quadratic (double x, void *params);
+     double quadratic_deriv (double x, void *params);
+     void quadratic_fdf (double x, void *params,
+                         double *y, double *dy);
+
+We place the function definitions in a separate file (`demo_fn.c'),
+
+     double
+     quadratic (double x, void *params)
+     {
+       struct quadratic_params *p
+         = (struct quadratic_params *) params;
+
+       double a = p->a;
+       double b = p->b;
+       double c = p->c;
+
+       return (a * x + b) * x + c;
+     }
+
+     double
+     quadratic_deriv (double x, void *params)
+     {
+       struct quadratic_params *p
+         = (struct quadratic_params *) params;
+
+       double a = p->a;
+       double b = p->b;
+       double c = p->c;
+
+       return 2.0 * a * x + b;
+     }
+
+     void
+     quadratic_fdf (double x, void *params,
+                    double *y, double *dy)
+     {
+       struct quadratic_params *p
+         = (struct quadratic_params *) params;
+
+       double a = p->a;
+       double b = p->b;
+       double c = p->c;
+
+       *y = (a * x + b) * x + c;
+       *dy = 2.0 * a * x + b;
+     }
+
+The first program uses the function solver `gsl_root_fsolver_brent' for
+Brent's method and the general quadratic defined above to solve the
+following equation,
+
+     x^2 - 5 = 0
+
+with solution x = \sqrt 5 = 2.236068...
+
+     #include <stdio.h>
+     #include <gsl/gsl_errno.h>
+     #include <gsl/gsl_math.h>
+     #include <gsl/gsl_roots.h>
+
+     #include "demo_fn.h"
+     #include "demo_fn.c"
+
+     int
+     main (void)
+     {
+       int status;
+       int iter = 0, max_iter = 100;
+       const gsl_root_fsolver_type *T;
+       gsl_root_fsolver *s;
+       double r = 0, r_expected = sqrt (5.0);
+       double x_lo = 0.0, x_hi = 5.0;
+       gsl_function F;
+       struct quadratic_params params = {1.0, 0.0, -5.0};
+
+       F.function = &quadratic;
+       F.params = &params;
+
+       T = gsl_root_fsolver_brent;
+       s = gsl_root_fsolver_alloc (T);
+       gsl_root_fsolver_set (s, &F, x_lo, x_hi);
+
+       printf ("using %s method\n",
+               gsl_root_fsolver_name (s));
+
+       printf ("%5s [%9s, %9s] %9s %10s %9s\n",
+               "iter", "lower", "upper", "root",
+               "err", "err(est)");
+
+       do
+         {
+           iter++;
+           status = gsl_root_fsolver_iterate (s);
+           r = gsl_root_fsolver_root (s);
+           x_lo = gsl_root_fsolver_x_lower (s);
+           x_hi = gsl_root_fsolver_x_upper (s);
+           status = gsl_root_test_interval (x_lo, x_hi,
+                                            0, 0.001);
+
+           if (status == GSL_SUCCESS)
+             printf ("Converged:\n");
+
+           printf ("%5d [%.7f, %.7f] %.7f %+.7f %.7f\n",
+                   iter, x_lo, x_hi,
+                   r, r - r_expected,
+                   x_hi - x_lo);
+         }
+       while (status == GSL_CONTINUE && iter < max_iter);
+
+       gsl_root_fsolver_free (s);
+
+       return status;
+     }
+
+Here are the results of the iterations,
+
+     $ ./a.out
+     using brent method
+      iter [    lower,     upper]      root        err  err(est)
+         1 [1.0000000, 5.0000000] 1.0000000 -1.2360680 4.0000000
+         2 [1.0000000, 3.0000000] 3.0000000 +0.7639320 2.0000000
+         3 [2.0000000, 3.0000000] 2.0000000 -0.2360680 1.0000000
+         4 [2.2000000, 3.0000000] 2.2000000 -0.0360680 0.8000000
+         5 [2.2000000, 2.2366300] 2.2366300 +0.0005621 0.0366300
+     Converged:
+         6 [2.2360634, 2.2366300] 2.2360634 -0.0000046 0.0005666
+
+If the program is modified to use the bisection solver instead of
+Brent's method, by changing `gsl_root_fsolver_brent' to
+`gsl_root_fsolver_bisection' the slower convergence of the Bisection
+method can be observed,
+
+     $ ./a.out
+     using bisection method
+      iter [    lower,     upper]      root        err  err(est)
+         1 [0.0000000, 2.5000000] 1.2500000 -0.9860680 2.5000000
+         2 [1.2500000, 2.5000000] 1.8750000 -0.3610680 1.2500000
+         3 [1.8750000, 2.5000000] 2.1875000 -0.0485680 0.6250000
+         4 [2.1875000, 2.5000000] 2.3437500 +0.1076820 0.3125000
+         5 [2.1875000, 2.3437500] 2.2656250 +0.0295570 0.1562500
+         6 [2.1875000, 2.2656250] 2.2265625 -0.0095055 0.0781250
+         7 [2.2265625, 2.2656250] 2.2460938 +0.0100258 0.0390625
+         8 [2.2265625, 2.2460938] 2.2363281 +0.0002601 0.0195312
+         9 [2.2265625, 2.2363281] 2.2314453 -0.0046227 0.0097656
+        10 [2.2314453, 2.2363281] 2.2338867 -0.0021813 0.0048828
+        11 [2.2338867, 2.2363281] 2.2351074 -0.0009606 0.0024414
+     Converged:
+        12 [2.2351074, 2.2363281] 2.2357178 -0.0003502 0.0012207
+
+   The next program solves the same function using a derivative solver
+instead.
+
+     #include <stdio.h>
+     #include <gsl/gsl_errno.h>
+     #include <gsl/gsl_math.h>
+     #include <gsl/gsl_roots.h>
+
+     #include "demo_fn.h"
+     #include "demo_fn.c"
+
+     int
+     main (void)
+     {
+       int status;
+       int iter = 0, max_iter = 100;
+       const gsl_root_fdfsolver_type *T;
+       gsl_root_fdfsolver *s;
+       double x0, x = 5.0, r_expected = sqrt (5.0);
+       gsl_function_fdf FDF;
+       struct quadratic_params params = {1.0, 0.0, -5.0};
+
+       FDF.f = &quadratic;
+       FDF.df = &quadratic_deriv;
+       FDF.fdf = &quadratic_fdf;
+       FDF.params = &params;
+
+       T = gsl_root_fdfsolver_newton;
+       s = gsl_root_fdfsolver_alloc (T);
+       gsl_root_fdfsolver_set (s, &FDF, x);
+
+       printf ("using %s method\n",
+               gsl_root_fdfsolver_name (s));
+
+       printf ("%-5s %10s %10s %10s\n",
+               "iter", "root", "err", "err(est)");
+       do
+         {
+           iter++;
+           status = gsl_root_fdfsolver_iterate (s);
+           x0 = x;
+           x = gsl_root_fdfsolver_root (s);
+           status = gsl_root_test_delta (x, x0, 0, 1e-3);
+
+           if (status == GSL_SUCCESS)
+             printf ("Converged:\n");
+
+           printf ("%5d %10.7f %+10.7f %10.7f\n",
+                   iter, x, x - r_expected, x - x0);
+         }
+       while (status == GSL_CONTINUE && iter < max_iter);
+
+       gsl_root_fdfsolver_free (s);
+       return status;
+     }
+
+Here are the results for Newton's method,
+
+     $ ./a.out
+     using newton method
+     iter        root        err   err(est)
+         1  3.0000000 +0.7639320 -2.0000000
+         2  2.3333333 +0.0972654 -0.6666667
+         3  2.2380952 +0.0020273 -0.0952381
+     Converged:
+         4  2.2360689 +0.0000009 -0.0020263
+
+Note that the error can be estimated more accurately by taking the
+difference between the current iterate and next iterate rather than the
+previous iterate.  The other derivative solvers can be investigated by
+changing `gsl_root_fdfsolver_newton' to `gsl_root_fdfsolver_secant' or
+`gsl_root_fdfsolver_steffenson'.
+
+\1f
+File: gsl-ref.info,  Node: Root Finding References and Further Reading,  Prev: Root Finding Examples,  Up: One dimensional Root-Finding
+
+33.11 References and Further Reading
+====================================
+
+For information on the Brent-Dekker algorithm see the following two
+papers,
+
+     R. P. Brent, "An algorithm with guaranteed convergence for finding
+     a zero of a function", `Computer Journal', 14 (1971) 422-425
+
+     J. C. P. Bus and T. J. Dekker, "Two Efficient Algorithms with
+     Guaranteed Convergence for Finding a Zero of a Function", `ACM
+     Transactions of Mathematical Software', Vol. 1 No. 4 (1975) 330-345
+
+\1f
+File: gsl-ref.info,  Node: One dimensional Minimization,  Next: Multidimensional Root-Finding,  Prev: One dimensional Root-Finding,  Up: Top
+
+34 One dimensional Minimization
+*******************************
+
+This chapter describes routines for finding minima of arbitrary
+one-dimensional functions.  The library provides low level components
+for a variety of iterative minimizers and convergence tests.  These can
+be combined by the user to achieve the desired solution, with full
+access to the intermediate steps of the algorithms.  Each class of
+methods uses the same framework, so that you can switch between
+minimizers at runtime without needing to recompile your program.  Each
+instance of a minimizer keeps track of its own state, allowing the
+minimizers to be used in multi-threaded programs.
+
+   The header file `gsl_min.h' contains prototypes for the minimization
+functions and related declarations.  To use the minimization algorithms
+to find the maximum of a function simply invert its sign.
+
+* Menu:
+
+* Minimization Overview::
+* Minimization Caveats::
+* Initializing the Minimizer::
+* Providing the function to minimize::
+* Minimization Iteration::
+* Minimization Stopping Parameters::
+* Minimization Algorithms::
+* Minimization Examples::
+* Minimization References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Minimization Overview,  Next: Minimization Caveats,  Up: One dimensional Minimization
+
+34.1 Overview
+=============
+
+The minimization algorithms begin with a bounded region known to contain
+a minimum.  The region is described by a lower bound a and an upper
+bound b, with an estimate of the location of the minimum x.
+
+The value of the function at x must be less than the value of the
+function at the ends of the interval,
+
+     f(a) > f(x) < f(b)
+
+This condition guarantees that a minimum is contained somewhere within
+the interval.  On each iteration a new point x' is selected using one
+of the available algorithms.  If the new point is a better estimate of
+the minimum, i.e. where f(x') < f(x), then the current estimate of the
+minimum x is updated.  The new point also allows the size of the
+bounded interval to be reduced, by choosing the most compact set of
+points which satisfies the constraint f(a) > f(x) < f(b).  The interval
+is reduced until it encloses the true minimum to a desired tolerance.
+This provides a best estimate of the location of the minimum and a
+rigorous error estimate.
+
+   Several bracketing algorithms are available within a single
+framework.  The user provides a high-level driver for the algorithm,
+and the library provides the individual functions necessary for each of
+the steps.  There are three main phases of the iteration.  The steps
+are,
+
+   * initialize minimizer state, S, for algorithm T
+
+   * update S using the iteration T
+
+   * test S for convergence, and repeat iteration if necessary
+
+The state for the minimizers is held in a `gsl_min_fminimizer' struct.
+The updating procedure uses only function evaluations (not derivatives).
+
+\1f
+File: gsl-ref.info,  Node: Minimization Caveats,  Next: Initializing the Minimizer,  Prev: Minimization Overview,  Up: One dimensional Minimization
+
+34.2 Caveats
+============
+
+Note that minimization functions can only search for one minimum at a
+time.  When there are several minima in the search area, the first
+minimum to be found will be returned; however it is difficult to predict
+which of the minima this will be. _In most cases, no error will be
+reported if you try to find a minimum in an area where there is more
+than one._
+
+   With all minimization algorithms it can be difficult to determine the
+location of the minimum to full numerical precision.  The behavior of
+the function in the region of the minimum x^* can be approximated by a
+Taylor expansion,
+
+     y = f(x^*) + (1/2) f''(x^*) (x - x^*)^2
+
+and the second term of this expansion can be lost when added to the
+first term at finite precision.  This magnifies the error in locating
+x^*, making it proportional to \sqrt \epsilon (where \epsilon is the
+relative accuracy of the floating point numbers).  For functions with
+higher order minima, such as x^4, the magnification of the error is
+correspondingly worse.  The best that can be achieved is to converge to
+the limit of numerical accuracy in the function values, rather than the
+location of the minimum itself.
+
+\1f
+File: gsl-ref.info,  Node: Initializing the Minimizer,  Next: Providing the function to minimize,  Prev: Minimization Caveats,  Up: One dimensional Minimization
+
+34.3 Initializing the Minimizer
+===============================
+
+ -- Function: gsl_min_fminimizer * gsl_min_fminimizer_alloc (const
+          gsl_min_fminimizer_type * T)
+     This function returns a pointer to a newly allocated instance of a
+     minimizer of type T.  For example, the following code creates an
+     instance of a golden section minimizer,
+
+          const gsl_min_fminimizer_type * T
+            = gsl_min_fminimizer_goldensection;
+          gsl_min_fminimizer * s
+            = gsl_min_fminimizer_alloc (T);
+
+     If there is insufficient memory to create the minimizer then the
+     function returns a null pointer and the error handler is invoked
+     with an error code of `GSL_ENOMEM'.
+
+ -- Function: int gsl_min_fminimizer_set (gsl_min_fminimizer * S,
+          gsl_function * F, double X_MINIMUM, double X_LOWER, double
+          X_UPPER)
+     This function sets, or resets, an existing minimizer S to use the
+     function F and the initial search interval [X_LOWER, X_UPPER],
+     with a guess for the location of the minimum X_MINIMUM.
+
+     If the interval given does not contain a minimum, then the function
+     returns an error code of `GSL_EINVAL'.
+
+ -- Function: int gsl_min_fminimizer_set_with_values
+          (gsl_min_fminimizer * S, gsl_function * F, double X_MINIMUM,
+          double F_MINIMUM, double X_LOWER, double F_LOWER, double
+          X_UPPER, double F_UPPER)
+     This function is equivalent to `gsl_min_fminimizer_set' but uses
+     the values F_MINIMUM, F_LOWER and F_UPPER instead of computing
+     `f(x_minimum)', `f(x_lower)' and `f(x_upper)'.
+
+ -- Function: void gsl_min_fminimizer_free (gsl_min_fminimizer * S)
+     This function frees all the memory associated with the minimizer S.
+
+ -- Function: const char * gsl_min_fminimizer_name (const
+          gsl_min_fminimizer * S)
+     This function returns a pointer to the name of the minimizer.  For
+     example,
+
+          printf ("s is a '%s' minimizer\n",
+                  gsl_min_fminimizer_name (s));
+
+     would print something like `s is a 'brent' minimizer'.
+
+\1f
+File: gsl-ref.info,  Node: Providing the function to minimize,  Next: Minimization Iteration,  Prev: Initializing the Minimizer,  Up: One dimensional Minimization
+
+34.4 Providing the function to minimize
+=======================================
+
+You must provide a continuous function of one variable for the
+minimizers to operate on.  In order to allow for general parameters the
+functions are defined by a `gsl_function' data type (*note Providing
+the function to solve::).
+
+\1f
+File: gsl-ref.info,  Node: Minimization Iteration,  Next: Minimization Stopping Parameters,  Prev: Providing the function to minimize,  Up: One dimensional Minimization
+
+34.5 Iteration
+==============
+
+The following functions drive the iteration of each algorithm.  Each
+function performs one iteration to update the state of any minimizer of
+the corresponding type.  The same functions work for all minimizers so
+that different methods can be substituted at runtime without
+modifications to the code.
+
+ -- Function: int gsl_min_fminimizer_iterate (gsl_min_fminimizer * S)
+     This function performs a single iteration of the minimizer S.  If
+     the iteration encounters an unexpected problem then an error code
+     will be returned,
+
+    `GSL_EBADFUNC'
+          the iteration encountered a singular point where the function
+          evaluated to `Inf' or `NaN'.
+
+    `GSL_FAILURE'
+          the algorithm could not improve the current best
+          approximation or bounding interval.
+
+   The minimizer maintains a current best estimate of the position of
+the minimum at all times, and the current interval bounding the minimum.
+This information can be accessed with the following auxiliary functions,
+
+ -- Function: double gsl_min_fminimizer_x_minimum (const
+          gsl_min_fminimizer * S)
+     This function returns the current estimate of the position of the
+     minimum for the minimizer S.
+
+ -- Function: double gsl_min_fminimizer_x_upper (const
+          gsl_min_fminimizer * S)
+ -- Function: double gsl_min_fminimizer_x_lower (const
+          gsl_min_fminimizer * S)
+     These functions return the current upper and lower bound of the
+     interval for the minimizer S.
+
+ -- Function: double gsl_min_fminimizer_f_minimum (const
+          gsl_min_fminimizer * S)
+ -- Function: double gsl_min_fminimizer_f_upper (const
+          gsl_min_fminimizer * S)
+ -- Function: double gsl_min_fminimizer_f_lower (const
+          gsl_min_fminimizer * S)
+     These functions return the value of the function at the current
+     estimate of the minimum and at the upper and lower bounds of the
+     interval for the minimizer S.
+
+\1f
+File: gsl-ref.info,  Node: Minimization Stopping Parameters,  Next: Minimization Algorithms,  Prev: Minimization Iteration,  Up: One dimensional Minimization
+
+34.6 Stopping Parameters
+========================
+
+A minimization procedure should stop when one of the following
+conditions is true:
+
+   * A minimum has been found to within the user-specified precision.
+
+   * A user-specified maximum number of iterations has been reached.
+
+   * An error has occurred.
+
+The handling of these conditions is under user control.  The function
+below allows the user to test the precision of the current result.
+
+ -- Function: int gsl_min_test_interval (double X_LOWER, double
+          X_UPPER, double EPSABS, double EPSREL)
+     This function tests for the convergence of the interval [X_LOWER,
+     X_UPPER] with absolute error EPSABS and relative error EPSREL.
+     The test returns `GSL_SUCCESS' if the following condition is
+     achieved,
+
+          |a - b| < epsabs + epsrel min(|a|,|b|)
+
+     when the interval x = [a,b] does not include the origin.  If the
+     interval includes the origin then \min(|a|,|b|) is replaced by
+     zero (which is the minimum value of |x| over the interval).  This
+     ensures that the relative error is accurately estimated for minima
+     close to the origin.
+
+     This condition on the interval also implies that any estimate of
+     the minimum x_m in the interval satisfies the same condition with
+     respect to the true minimum x_m^*,
+
+          |x_m - x_m^*| < epsabs + epsrel x_m^*
+
+     assuming that the true minimum x_m^* is contained within the
+     interval.
+
+\1f
+File: gsl-ref.info,  Node: Minimization Algorithms,  Next: Minimization Examples,  Prev: Minimization Stopping Parameters,  Up: One dimensional Minimization
+
+34.7 Minimization Algorithms
+============================
+
+The minimization algorithms described in this section require an initial
+interval which is guaranteed to contain a minimum--if a and b are the
+endpoints of the interval and x is an estimate of the minimum then f(a)
+> f(x) < f(b).  This ensures that the function has at least one minimum
+somewhere in the interval.  If a valid initial interval is used then
+these algorithm cannot fail, provided the function is well-behaved.
+
+ -- Minimizer: gsl_min_fminimizer_goldensection
+     The "golden section algorithm" is the simplest method of bracketing
+     the minimum of a function.  It is the slowest algorithm provided
+     by the library, with linear convergence.
+
+     On each iteration, the algorithm first compares the subintervals
+     from the endpoints to the current minimum.  The larger subinterval
+     is divided in a golden section (using the famous ratio (3-\sqrt
+     5)/2 = 0.3189660...) and the value of the function at this new
+     point is calculated.  The new value is used with the constraint
+     f(a') > f(x') < f(b') to a select new interval containing the
+     minimum, by discarding the least useful point.  This procedure can
+     be continued indefinitely until the interval is sufficiently
+     small.  Choosing the golden section as the bisection ratio can be
+     shown to provide the fastest convergence for this type of
+     algorithm.
+
+
+ -- Minimizer: gsl_min_fminimizer_brent
+     The "Brent minimization algorithm" combines a parabolic
+     interpolation with the golden section algorithm.  This produces a
+     fast algorithm which is still robust.
+
+     The outline of the algorithm can be summarized as follows: on each
+     iteration Brent's method approximates the function using an
+     interpolating parabola through three existing points.  The minimum
+     of the parabola is taken as a guess for the minimum.  If it lies
+     within the bounds of the current interval then the interpolating
+     point is accepted, and used to generate a smaller interval.  If
+     the interpolating point is not accepted then the algorithm falls
+     back to an ordinary golden section step.  The full details of
+     Brent's method include some additional checks to improve
+     convergence.
+
+ -- Minimizer: gsl_min_fminimizer_quad_golden
+     This is a variant of Brent's algorithm which uses the safeguarded
+     step-length algorithm of Gill and Murray.
+
+\1f
+File: gsl-ref.info,  Node: Minimization Examples,  Next: Minimization References and Further Reading,  Prev: Minimization Algorithms,  Up: One dimensional Minimization
+
+34.8 Examples
+=============
+
+The following program uses the Brent algorithm to find the minimum of
+the function f(x) = \cos(x) + 1, which occurs at x = \pi.  The starting
+interval is (0,6), with an initial guess for the minimum of 2.
+
+     #include <stdio.h>
+     #include <gsl/gsl_errno.h>
+     #include <gsl/gsl_math.h>
+     #include <gsl/gsl_min.h>
+
+     double fn1 (double x, void * params)
+     {
+       return cos(x) + 1.0;
+     }
+
+     int
+     main (void)
+     {
+       int status;
+       int iter = 0, max_iter = 100;
+       const gsl_min_fminimizer_type *T;
+       gsl_min_fminimizer *s;
+       double m = 2.0, m_expected = M_PI;
+       double a = 0.0, b = 6.0;
+       gsl_function F;
+
+       F.function = &fn1;
+       F.params = 0;
+
+       T = gsl_min_fminimizer_brent;
+       s = gsl_min_fminimizer_alloc (T);
+       gsl_min_fminimizer_set (s, &F, m, a, b);
+
+       printf ("using %s method\n",
+               gsl_min_fminimizer_name (s));
+
+       printf ("%5s [%9s, %9s] %9s %10s %9s\n",
+               "iter", "lower", "upper", "min",
+               "err", "err(est)");
+
+       printf ("%5d [%.7f, %.7f] %.7f %+.7f %.7f\n",
+               iter, a, b,
+               m, m - m_expected, b - a);
+
+       do
+         {
+           iter++;
+           status = gsl_min_fminimizer_iterate (s);
+
+           m = gsl_min_fminimizer_x_minimum (s);
+           a = gsl_min_fminimizer_x_lower (s);
+           b = gsl_min_fminimizer_x_upper (s);
+
+           status
+             = gsl_min_test_interval (a, b, 0.001, 0.0);
+
+           if (status == GSL_SUCCESS)
+             printf ("Converged:\n");
+
+           printf ("%5d [%.7f, %.7f] "
+                   "%.7f %+.7f %.7f\n",
+                   iter, a, b,
+                   m, m - m_expected, b - a);
+         }
+       while (status == GSL_CONTINUE && iter < max_iter);
+
+       gsl_min_fminimizer_free (s);
+
+       return status;
+     }
+
+Here are the results of the minimization procedure.
+
+     $ ./a.out
+         0 [0.0000000, 6.0000000] 2.0000000 -1.1415927 6.0000000
+         1 [2.0000000, 6.0000000] 3.2758640 +0.1342713 4.0000000
+         2 [2.0000000, 3.2831929] 3.2758640 +0.1342713 1.2831929
+         3 [2.8689068, 3.2831929] 3.2758640 +0.1342713 0.4142862
+         4 [2.8689068, 3.2831929] 3.2758640 +0.1342713 0.4142862
+         5 [2.8689068, 3.2758640] 3.1460585 +0.0044658 0.4069572
+         6 [3.1346075, 3.2758640] 3.1460585 +0.0044658 0.1412565
+         7 [3.1346075, 3.1874620] 3.1460585 +0.0044658 0.0528545
+         8 [3.1346075, 3.1460585] 3.1460585 +0.0044658 0.0114510
+         9 [3.1346075, 3.1460585] 3.1424060 +0.0008133 0.0114510
+        10 [3.1346075, 3.1424060] 3.1415885 -0.0000041 0.0077985
+     Converged:
+        11 [3.1415885, 3.1424060] 3.1415927 -0.0000000 0.0008175
+
+\1f
+File: gsl-ref.info,  Node: Minimization References and Further Reading,  Prev: Minimization Examples,  Up: One dimensional Minimization
+
+34.9 References and Further Reading
+===================================
+
+Further information on Brent's algorithm is available in the following
+book,
+
+     Richard Brent, `Algorithms for minimization without derivatives',
+     Prentice-Hall (1973), republished by Dover in paperback (2002),
+     ISBN 0-486-41998-3.
+
+\1f
+File: gsl-ref.info,  Node: Multidimensional Root-Finding,  Next: Multidimensional Minimization,  Prev: One dimensional Minimization,  Up: Top
+
+35 Multidimensional Root-Finding
+********************************
+
+This chapter describes functions for multidimensional root-finding
+(solving nonlinear systems with n equations in n unknowns).  The
+library provides low level components for a variety of iterative
+solvers and convergence tests.  These can be combined by the user to
+achieve the desired solution, with full access to the intermediate
+steps of the iteration.  Each class of methods uses the same framework,
+so that you can switch between solvers at runtime without needing to
+recompile your program.  Each instance of a solver keeps track of its
+own state, allowing the solvers to be used in multi-threaded programs.
+The solvers are based on the original Fortran library MINPACK.
+
+   The header file `gsl_multiroots.h' contains prototypes for the
+multidimensional root finding functions and related declarations.
+
+* Menu:
+
+* Overview of Multidimensional Root Finding::
+* Initializing the Multidimensional Solver::
+* Providing the multidimensional system of equations to solve::
+* Iteration of the multidimensional solver::
+* Search Stopping Parameters for the multidimensional solver::
+* Algorithms using Derivatives::
+* Algorithms without Derivatives::
+* Example programs for Multidimensional Root finding::
+* References and Further Reading for Multidimensional Root Finding::
+
+\1f
+File: gsl-ref.info,  Node: Overview of Multidimensional Root Finding,  Next: Initializing the Multidimensional Solver,  Up: Multidimensional Root-Finding
+
+35.1 Overview
+=============
+
+The problem of multidimensional root finding requires the simultaneous
+solution of n equations, f_i, in n variables, x_i,
+
+     f_i (x_1, ..., x_n) = 0    for i = 1 ... n.
+
+In general there are no bracketing methods available for n dimensional
+systems, and no way of knowing whether any solutions exist.  All
+algorithms proceed from an initial guess using a variant of the Newton
+iteration,
+
+     x -> x' = x - J^{-1} f(x)
+
+where x, f are vector quantities and J is the Jacobian matrix J_{ij} =
+d f_i / d x_j.  Additional strategies can be used to enlarge the region
+of convergence.  These include requiring a decrease in the norm |f| on
+each step proposed by Newton's method, or taking steepest-descent steps
+in the direction of the negative gradient of |f|.
+
+   Several root-finding algorithms are available within a single
+framework.  The user provides a high-level driver for the algorithms,
+and the library provides the individual functions necessary for each of
+the steps.  There are three main phases of the iteration.  The steps
+are,
+
+   * initialize solver state, S, for algorithm T
+
+   * update S using the iteration T
+
+   * test S for convergence, and repeat iteration if necessary
+
+The evaluation of the Jacobian matrix can be problematic, either because
+programming the derivatives is intractable or because computation of the
+n^2 terms of the matrix becomes too expensive.  For these reasons the
+algorithms provided by the library are divided into two classes
+according to whether the derivatives are available or not.
+
+   The state for solvers with an analytic Jacobian matrix is held in a
+`gsl_multiroot_fdfsolver' struct.  The updating procedure requires both
+the function and its derivatives to be supplied by the user.
+
+   The state for solvers which do not use an analytic Jacobian matrix is
+held in a `gsl_multiroot_fsolver' struct.  The updating procedure uses
+only function evaluations (not derivatives).  The algorithms estimate
+the matrix J or J^{-1} by approximate methods.
+

diff --git a/util/X86LINUX64/share/info/gsl-ref.info-4 b/util/X86LINUX64/share/info/gsl-ref.info-4
new file mode 100644 (file)
index 0000000..117c1cb
--- /dev/null
+++ b/util/X86LINUX64/share/info/gsl-ref.info-4
@@ -0,0 +1,6600 @@
+This is gsl-ref.info, produced by makeinfo version 4.13 from
+gsl-ref.texi.
+
+INFO-DIR-SECTION Software libraries
+START-INFO-DIR-ENTRY
+* gsl-ref: (gsl-ref).                   GNU Scientific Library - Reference
+END-INFO-DIR-ENTRY
+
+   Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004,
+2005, 2006, 2007, 2008, 2009, 2010, 2011 The GSL Team.
+
+   Permission is granted to copy, distribute and/or modify this document
+under the terms of the GNU Free Documentation License, Version 1.3 or
+any later version published by the Free Software Foundation; with the
+Invariant Sections being "GNU General Public License" and "Free Software
+Needs Free Documentation", the Front-Cover text being "A GNU Manual",
+and with the Back-Cover Text being (a) (see below).  A copy of the
+license is included in the section entitled "GNU Free Documentation
+License".
+
+   (a) The Back-Cover Text is: "You have the freedom to copy and modify
+this GNU Manual."
+
+\1f
+File: gsl-ref.info,  Node: Initializing the Multidimensional Solver,  Next: Providing the multidimensional system of equations to solve,  Prev: Overview of Multidimensional Root Finding,  Up: Multidimensional Root-Finding
+
+35.2 Initializing the Solver
+============================
+
+The following functions initialize a multidimensional solver, either
+with or without derivatives.  The solver itself depends only on the
+dimension of the problem and the algorithm and can be reused for
+different problems.
+
+ -- Function: gsl_multiroot_fsolver * gsl_multiroot_fsolver_alloc
+          (const gsl_multiroot_fsolver_type * T, size_t N)
+     This function returns a pointer to a newly allocated instance of a
+     solver of type T for a system of N dimensions.  For example, the
+     following code creates an instance of a hybrid solver, to solve a
+     3-dimensional system of equations.
+
+          const gsl_multiroot_fsolver_type * T
+              = gsl_multiroot_fsolver_hybrid;
+          gsl_multiroot_fsolver * s
+              = gsl_multiroot_fsolver_alloc (T, 3);
+
+     If there is insufficient memory to create the solver then the
+     function returns a null pointer and the error handler is invoked
+     with an error code of `GSL_ENOMEM'.
+
+ -- Function: gsl_multiroot_fdfsolver * gsl_multiroot_fdfsolver_alloc
+          (const gsl_multiroot_fdfsolver_type * T, size_t N)
+     This function returns a pointer to a newly allocated instance of a
+     derivative solver of type T for a system of N dimensions.  For
+     example, the following code creates an instance of a
+     Newton-Raphson solver, for a 2-dimensional system of equations.
+
+          const gsl_multiroot_fdfsolver_type * T
+              = gsl_multiroot_fdfsolver_newton;
+          gsl_multiroot_fdfsolver * s =
+              gsl_multiroot_fdfsolver_alloc (T, 2);
+
+     If there is insufficient memory to create the solver then the
+     function returns a null pointer and the error handler is invoked
+     with an error code of `GSL_ENOMEM'.
+
+ -- Function: int gsl_multiroot_fsolver_set (gsl_multiroot_fsolver * S,
+          gsl_multiroot_function * F, const gsl_vector * X)
+ -- Function: int gsl_multiroot_fdfsolver_set (gsl_multiroot_fdfsolver
+          * S, gsl_multiroot_function_fdf * FDF, const gsl_vector * X)
+     These functions set, or reset, an existing solver S to use the
+     function F or function and derivative FDF, and the initial guess
+     X.  Note that the initial position is copied from X, this argument
+     is not modified by subsequent iterations.
+
+ -- Function: void gsl_multiroot_fsolver_free (gsl_multiroot_fsolver *
+          S)
+ -- Function: void gsl_multiroot_fdfsolver_free
+          (gsl_multiroot_fdfsolver * S)
+     These functions free all the memory associated with the solver S.
+
+ -- Function: const char * gsl_multiroot_fsolver_name (const
+          gsl_multiroot_fsolver * S)
+ -- Function: const char * gsl_multiroot_fdfsolver_name (const
+          gsl_multiroot_fdfsolver * S)
+     These functions return a pointer to the name of the solver.  For
+     example,
+
+          printf ("s is a '%s' solver\n",
+                  gsl_multiroot_fdfsolver_name (s));
+
+     would print something like `s is a 'newton' solver'.
+
+\1f
+File: gsl-ref.info,  Node: Providing the multidimensional system of equations to solve,  Next: Iteration of the multidimensional solver,  Prev: Initializing the Multidimensional Solver,  Up: Multidimensional Root-Finding
+
+35.3 Providing the function to solve
+====================================
+
+You must provide n functions of n variables for the root finders to
+operate on.  In order to allow for general parameters the functions are
+defined by the following data types:
+
+ -- Data Type: gsl_multiroot_function
+     This data type defines a general system of functions with
+     parameters.
+
+    `int (* f) (const gsl_vector * X, void * PARAMS, gsl_vector * F)'
+          this function should store the vector result f(x,params) in F
+          for argument X and parameters PARAMS, returning an
+          appropriate error code if the function cannot be computed.
+
+    `size_t n'
+          the dimension of the system, i.e. the number of components of
+          the vectors X and F.
+
+    `void * params'
+          a pointer to the parameters of the function.
+
+Here is an example using Powell's test function,
+
+     f_1(x) = A x_0 x_1 - 1,
+     f_2(x) = exp(-x_0) + exp(-x_1) - (1 + 1/A)
+
+with A = 10^4.  The following code defines a `gsl_multiroot_function'
+system `F' which you could pass to a solver:
+
+     struct powell_params { double A; };
+
+     int
+     powell (gsl_vector * x, void * p, gsl_vector * f) {
+        struct powell_params * params
+          = *(struct powell_params *)p;
+        const double A = (params->A);
+        const double x0 = gsl_vector_get(x,0);
+        const double x1 = gsl_vector_get(x,1);
+
+        gsl_vector_set (f, 0, A * x0 * x1 - 1);
+        gsl_vector_set (f, 1, (exp(-x0) + exp(-x1)
+                               - (1.0 + 1.0/A)));
+        return GSL_SUCCESS
+     }
+
+     gsl_multiroot_function F;
+     struct powell_params params = { 10000.0 };
+
+     F.f = &powell;
+     F.n = 2;
+     F.params = &params;
+
+ -- Data Type: gsl_multiroot_function_fdf
+     This data type defines a general system of functions with
+     parameters and the corresponding Jacobian matrix of derivatives,
+
+    `int (* f) (const gsl_vector * X, void * PARAMS, gsl_vector * F)'
+          this function should store the vector result f(x,params) in F
+          for argument X and parameters PARAMS, returning an
+          appropriate error code if the function cannot be computed.
+
+    `int (* df) (const gsl_vector * X, void * PARAMS, gsl_matrix * J)'
+          this function should store the N-by-N matrix result J_ij = d
+          f_i(x,params) / d x_j in J for argument X and parameters
+          PARAMS, returning an appropriate error code if the function
+          cannot be computed.
+
+    `int (* fdf) (const gsl_vector * X, void * PARAMS, gsl_vector * F, gsl_matrix * J)'
+          This function should set the values of the F and J as above,
+          for arguments X and parameters PARAMS.  This function
+          provides an optimization of the separate functions for f(x)
+          and J(x)--it is always faster to compute the function and its
+          derivative at the same time.
+
+    `size_t n'
+          the dimension of the system, i.e. the number of components of
+          the vectors X and F.
+
+    `void * params'
+          a pointer to the parameters of the function.
+
+The example of Powell's test function defined above can be extended to
+include analytic derivatives using the following code,
+
+     int
+     powell_df (gsl_vector * x, void * p, gsl_matrix * J)
+     {
+        struct powell_params * params
+          = *(struct powell_params *)p;
+        const double A = (params->A);
+        const double x0 = gsl_vector_get(x,0);
+        const double x1 = gsl_vector_get(x,1);
+        gsl_matrix_set (J, 0, 0, A * x1);
+        gsl_matrix_set (J, 0, 1, A * x0);
+        gsl_matrix_set (J, 1, 0, -exp(-x0));
+        gsl_matrix_set (J, 1, 1, -exp(-x1));
+        return GSL_SUCCESS
+     }
+
+     int
+     powell_fdf (gsl_vector * x, void * p,
+                 gsl_matrix * f, gsl_matrix * J) {
+        struct powell_params * params
+          = *(struct powell_params *)p;
+        const double A = (params->A);
+        const double x0 = gsl_vector_get(x,0);
+        const double x1 = gsl_vector_get(x,1);
+
+        const double u0 = exp(-x0);
+        const double u1 = exp(-x1);
+
+        gsl_vector_set (f, 0, A * x0 * x1 - 1);
+        gsl_vector_set (f, 1, u0 + u1 - (1 + 1/A));
+
+        gsl_matrix_set (J, 0, 0, A * x1);
+        gsl_matrix_set (J, 0, 1, A * x0);
+        gsl_matrix_set (J, 1, 0, -u0);
+        gsl_matrix_set (J, 1, 1, -u1);
+        return GSL_SUCCESS
+     }
+
+     gsl_multiroot_function_fdf FDF;
+
+     FDF.f = &powell_f;
+     FDF.df = &powell_df;
+     FDF.fdf = &powell_fdf;
+     FDF.n = 2;
+     FDF.params = 0;
+
+Note that the function `powell_fdf' is able to reuse existing terms
+from the function when calculating the Jacobian, thus saving time.
+
+\1f
+File: gsl-ref.info,  Node: Iteration of the multidimensional solver,  Next: Search Stopping Parameters for the multidimensional solver,  Prev: Providing the multidimensional system of equations to solve,  Up: Multidimensional Root-Finding
+
+35.4 Iteration
+==============
+
+The following functions drive the iteration of each algorithm.  Each
+function performs one iteration to update the state of any solver of the
+corresponding type.  The same functions work for all solvers so that
+different methods can be substituted at runtime without modifications to
+the code.
+
+ -- Function: int gsl_multiroot_fsolver_iterate (gsl_multiroot_fsolver
+          * S)
+ -- Function: int gsl_multiroot_fdfsolver_iterate
+          (gsl_multiroot_fdfsolver * S)
+     These functions perform a single iteration of the solver S.  If the
+     iteration encounters an unexpected problem then an error code will
+     be returned,
+
+    `GSL_EBADFUNC'
+          the iteration encountered a singular point where the function
+          or its derivative evaluated to `Inf' or `NaN'.
+
+    `GSL_ENOPROG'
+          the iteration is not making any progress, preventing the
+          algorithm from continuing.
+
+   The solver maintains a current best estimate of the root `s->x' and
+its function value `s->f' at all times.  This information can be
+accessed with the following auxiliary functions,
+
+ -- Function: gsl_vector * gsl_multiroot_fsolver_root (const
+          gsl_multiroot_fsolver * S)
+ -- Function: gsl_vector * gsl_multiroot_fdfsolver_root (const
+          gsl_multiroot_fdfsolver * S)
+     These functions return the current estimate of the root for the
+     solver S, given by `s->x'.
+
+ -- Function: gsl_vector * gsl_multiroot_fsolver_f (const
+          gsl_multiroot_fsolver * S)
+ -- Function: gsl_vector * gsl_multiroot_fdfsolver_f (const
+          gsl_multiroot_fdfsolver * S)
+     These functions return the function value f(x) at the current
+     estimate of the root for the solver S, given by `s->f'.
+
+ -- Function: gsl_vector * gsl_multiroot_fsolver_dx (const
+          gsl_multiroot_fsolver * S)
+ -- Function: gsl_vector * gsl_multiroot_fdfsolver_dx (const
+          gsl_multiroot_fdfsolver * S)
+     These functions return the last step dx taken by the solver S,
+     given by `s->dx'.
+
+\1f
+File: gsl-ref.info,  Node: Search Stopping Parameters for the multidimensional solver,  Next: Algorithms using Derivatives,  Prev: Iteration of the multidimensional solver,  Up: Multidimensional Root-Finding
+
+35.5 Search Stopping Parameters
+===============================
+
+A root finding procedure should stop when one of the following
+conditions is true:
+
+   * A multidimensional root has been found to within the
+     user-specified precision.
+
+   * A user-specified maximum number of iterations has been reached.
+
+   * An error has occurred.
+
+The handling of these conditions is under user control.  The functions
+below allow the user to test the precision of the current result in
+several standard ways.
+
+ -- Function: int gsl_multiroot_test_delta (const gsl_vector * DX,
+          const gsl_vector * X, double EPSABS, double EPSREL)
+     This function tests for the convergence of the sequence by
+     comparing the last step DX with the absolute error EPSABS and
+     relative error EPSREL to the current position X.  The test returns
+     `GSL_SUCCESS' if the following condition is achieved,
+
+          |dx_i| < epsabs + epsrel |x_i|
+
+     for each component of X and returns `GSL_CONTINUE' otherwise.
+
+ -- Function: int gsl_multiroot_test_residual (const gsl_vector * F,
+          double EPSABS)
+     This function tests the residual value F against the absolute
+     error bound EPSABS.  The test returns `GSL_SUCCESS' if the
+     following condition is achieved,
+
+          \sum_i |f_i| < epsabs
+
+     and returns `GSL_CONTINUE' otherwise.  This criterion is suitable
+     for situations where the precise location of the root, x, is
+     unimportant provided a value can be found where the residual is
+     small enough.
+
+\1f
+File: gsl-ref.info,  Node: Algorithms using Derivatives,  Next: Algorithms without Derivatives,  Prev: Search Stopping Parameters for the multidimensional solver,  Up: Multidimensional Root-Finding
+
+35.6 Algorithms using Derivatives
+=================================
+
+The root finding algorithms described in this section make use of both
+the function and its derivative.  They require an initial guess for the
+location of the root, but there is no absolute guarantee of
+convergence--the function must be suitable for this technique and the
+initial guess must be sufficiently close to the root for it to work.
+When the conditions are satisfied then convergence is quadratic.
+
+ -- Derivative Solver: gsl_multiroot_fdfsolver_hybridsj
+     This is a modified version of Powell's Hybrid method as
+     implemented in the HYBRJ algorithm in MINPACK.  Minpack was
+     written by Jorge J. More', Burton S. Garbow and Kenneth E.
+     Hillstrom.  The Hybrid algorithm retains the fast convergence of
+     Newton's method but will also reduce the residual when Newton's
+     method is unreliable.
+
+     The algorithm uses a generalized trust region to keep each step
+     under control.  In order to be accepted a proposed new position x'
+     must satisfy the condition |D (x' - x)| < \delta, where D is a
+     diagonal scaling matrix and \delta is the size of the trust
+     region.  The components of D are computed internally, using the
+     column norms of the Jacobian to estimate the sensitivity of the
+     residual to each component of x.  This improves the behavior of the
+     algorithm for badly scaled functions.
+
+     On each iteration the algorithm first determines the standard
+     Newton step by solving the system J dx = - f.  If this step falls
+     inside the trust region it is used as a trial step in the next
+     stage.  If not, the algorithm uses the linear combination of the
+     Newton and gradient directions which is predicted to minimize the
+     norm of the function while staying inside the trust region,
+
+          dx = - \alpha J^{-1} f(x) - \beta \nabla |f(x)|^2.
+
+     This combination of Newton and gradient directions is referred to
+     as a "dogleg step".
+
+     The proposed step is now tested by evaluating the function at the
+     resulting point, x'.  If the step reduces the norm of the function
+     sufficiently then it is accepted and size of the trust region is
+     increased.  If the proposed step fails to improve the solution
+     then the size of the trust region is decreased and another trial
+     step is computed.
+
+     The speed of the algorithm is increased by computing the changes
+     to the Jacobian approximately, using a rank-1 update.  If two
+     successive attempts fail to reduce the residual then the full
+     Jacobian is recomputed.  The algorithm also monitors the progress
+     of the solution and returns an error if several steps fail to make
+     any improvement,
+
+    `GSL_ENOPROG'
+          the iteration is not making any progress, preventing the
+          algorithm from continuing.
+
+    `GSL_ENOPROGJ'
+          re-evaluations of the Jacobian indicate that the iteration is
+          not making any progress, preventing the algorithm from
+          continuing.
+
+
+ -- Derivative Solver: gsl_multiroot_fdfsolver_hybridj
+     This algorithm is an unscaled version of `hybridsj'.  The steps are
+     controlled by a spherical trust region |x' - x| < \delta, instead
+     of a generalized region.  This can be useful if the generalized
+     region estimated by `hybridsj' is inappropriate.
+
+ -- Derivative Solver: gsl_multiroot_fdfsolver_newton
+     Newton's Method is the standard root-polishing algorithm.  The
+     algorithm begins with an initial guess for the location of the
+     solution.  On each iteration a linear approximation to the
+     function F is used to estimate the step which will zero all the
+     components of the residual.  The iteration is defined by the
+     following sequence,
+
+          x -> x' = x - J^{-1} f(x)
+
+     where the Jacobian matrix J is computed from the derivative
+     functions provided by F.  The step dx is obtained by solving the
+     linear system,
+
+          J dx = - f(x)
+
+     using LU decomposition.  If the Jacobian matrix is singular, an
+     error code of `GSL_EDOM' is returned.
+
+ -- Derivative Solver: gsl_multiroot_fdfsolver_gnewton
+     This is a modified version of Newton's method which attempts to
+     improve global convergence by requiring every step to reduce the
+     Euclidean norm of the residual, |f(x)|.  If the Newton step leads
+     to an increase in the norm then a reduced step of relative size,
+
+          t = (\sqrt(1 + 6 r) - 1) / (3 r)
+
+     is proposed, with r being the ratio of norms |f(x')|^2/|f(x)|^2.
+     This procedure is repeated until a suitable step size is found.
+
+\1f
+File: gsl-ref.info,  Node: Algorithms without Derivatives,  Next: Example programs for Multidimensional Root finding,  Prev: Algorithms using Derivatives,  Up: Multidimensional Root-Finding
+
+35.7 Algorithms without Derivatives
+===================================
+
+The algorithms described in this section do not require any derivative
+information to be supplied by the user.  Any derivatives needed are
+approximated by finite differences.  Note that if the
+finite-differencing step size chosen by these routines is inappropriate,
+an explicit user-supplied numerical derivative can always be used with
+the algorithms described in the previous section.
+
+ -- Solver: gsl_multiroot_fsolver_hybrids
+     This is a version of the Hybrid algorithm which replaces calls to
+     the Jacobian function by its finite difference approximation.  The
+     finite difference approximation is computed using
+     `gsl_multiroots_fdjac' with a relative step size of
+     `GSL_SQRT_DBL_EPSILON'.  Note that this step size will not be
+     suitable for all problems.
+
+ -- Solver: gsl_multiroot_fsolver_hybrid
+     This is a finite difference version of the Hybrid algorithm without
+     internal scaling.
+
+ -- Solver: gsl_multiroot_fsolver_dnewton
+     The "discrete Newton algorithm" is the simplest method of solving a
+     multidimensional system.  It uses the Newton iteration
+
+          x -> x - J^{-1} f(x)
+
+     where the Jacobian matrix J is approximated by taking finite
+     differences of the function F.  The approximation scheme used by
+     this implementation is,
+
+          J_{ij} = (f_i(x + \delta_j) - f_i(x)) /  \delta_j
+
+     where \delta_j is a step of size \sqrt\epsilon |x_j| with \epsilon
+     being the machine precision (\epsilon \approx 2.22 \times 10^-16).
+     The order of convergence of Newton's algorithm is quadratic, but
+     the finite differences require n^2 function evaluations on each
+     iteration.  The algorithm may become unstable if the finite
+     differences are not a good approximation to the true derivatives.
+
+ -- Solver: gsl_multiroot_fsolver_broyden
+     The "Broyden algorithm" is a version of the discrete Newton
+     algorithm which attempts to avoids the expensive update of the
+     Jacobian matrix on each iteration.  The changes to the Jacobian
+     are also approximated, using a rank-1 update,
+
+          J^{-1} \to J^{-1} - (J^{-1} df - dx) dx^T J^{-1} / dx^T J^{-1} df
+
+     where the vectors dx and df are the changes in x and f.  On the
+     first iteration the inverse Jacobian is estimated using finite
+     differences, as in the discrete Newton algorithm.
+
+     This approximation gives a fast update but is unreliable if the
+     changes are not small, and the estimate of the inverse Jacobian
+     becomes worse as time passes.  The algorithm has a tendency to
+     become unstable unless it starts close to the root.  The Jacobian
+     is refreshed if this instability is detected (consult the source
+     for details).
+
+     This algorithm is included only for demonstration purposes, and is
+     not recommended for serious use.
+
+\1f
+File: gsl-ref.info,  Node: Example programs for Multidimensional Root finding,  Next: References and Further Reading for Multidimensional Root Finding,  Prev: Algorithms without Derivatives,  Up: Multidimensional Root-Finding
+
+35.8 Examples
+=============
+
+The multidimensional solvers are used in a similar way to the
+one-dimensional root finding algorithms.  This first example
+demonstrates the `hybrids' scaled-hybrid algorithm, which does not
+require derivatives. The program solves the Rosenbrock system of
+equations,
+
+     f_1 (x, y) = a (1 - x)
+     f_2 (x, y) = b (y - x^2)
+
+with a = 1, b = 10. The solution of this system lies at (x,y) = (1,1)
+in a narrow valley.
+
+   The first stage of the program is to define the system of equations,
+
+     #include <stdlib.h>
+     #include <stdio.h>
+     #include <gsl/gsl_vector.h>
+     #include <gsl/gsl_multiroots.h>
+
+     struct rparams
+       {
+         double a;
+         double b;
+       };
+
+     int
+     rosenbrock_f (const gsl_vector * x, void *params,
+                   gsl_vector * f)
+     {
+       double a = ((struct rparams *) params)->a;
+       double b = ((struct rparams *) params)->b;
+
+       const double x0 = gsl_vector_get (x, 0);
+       const double x1 = gsl_vector_get (x, 1);
+
+       const double y0 = a * (1 - x0);
+       const double y1 = b * (x1 - x0 * x0);
+
+       gsl_vector_set (f, 0, y0);
+       gsl_vector_set (f, 1, y1);
+
+       return GSL_SUCCESS;
+     }
+
+The main program begins by creating the function object `f', with the
+arguments `(x,y)' and parameters `(a,b)'. The solver `s' is initialized
+to use this function, with the `hybrids' method.
+
+     int
+     main (void)
+     {
+       const gsl_multiroot_fsolver_type *T;
+       gsl_multiroot_fsolver *s;
+
+       int status;
+       size_t i, iter = 0;
+
+       const size_t n = 2;
+       struct rparams p = {1.0, 10.0};
+       gsl_multiroot_function f = {&rosenbrock_f, n, &p};
+
+       double x_init[2] = {-10.0, -5.0};
+       gsl_vector *x = gsl_vector_alloc (n);
+
+       gsl_vector_set (x, 0, x_init[0]);
+       gsl_vector_set (x, 1, x_init[1]);
+
+       T = gsl_multiroot_fsolver_hybrids;
+       s = gsl_multiroot_fsolver_alloc (T, 2);
+       gsl_multiroot_fsolver_set (s, &f, x);
+
+       print_state (iter, s);
+
+       do
+         {
+           iter++;
+           status = gsl_multiroot_fsolver_iterate (s);
+
+           print_state (iter, s);
+
+           if (status)   /* check if solver is stuck */
+             break;
+
+           status =
+             gsl_multiroot_test_residual (s->f, 1e-7);
+         }
+       while (status == GSL_CONTINUE && iter < 1000);
+
+       printf ("status = %s\n", gsl_strerror (status));
+
+       gsl_multiroot_fsolver_free (s);
+       gsl_vector_free (x);
+       return 0;
+     }
+
+Note that it is important to check the return status of each solver
+step, in case the algorithm becomes stuck.  If an error condition is
+detected, indicating that the algorithm cannot proceed, then the error
+can be reported to the user, a new starting point chosen or a different
+algorithm used.
+
+   The intermediate state of the solution is displayed by the following
+function.  The solver state contains the vector `s->x' which is the
+current position, and the vector `s->f' with corresponding function
+values.
+
+     int
+     print_state (size_t iter, gsl_multiroot_fsolver * s)
+     {
+       printf ("iter = %3u x = % .3f % .3f "
+               "f(x) = % .3e % .3e\n",
+               iter,
+               gsl_vector_get (s->x, 0),
+               gsl_vector_get (s->x, 1),
+               gsl_vector_get (s->f, 0),
+               gsl_vector_get (s->f, 1));
+     }
+
+Here are the results of running the program. The algorithm is started at
+(-10,-5) far from the solution.  Since the solution is hidden in a
+narrow valley the earliest steps follow the gradient of the function
+downhill, in an attempt to reduce the large value of the residual. Once
+the root has been approximately located, on iteration 8, the Newton
+behavior takes over and convergence is very rapid.
+
+     iter =  0 x = -10.000  -5.000  f(x) = 1.100e+01 -1.050e+03
+     iter =  1 x = -10.000  -5.000  f(x) = 1.100e+01 -1.050e+03
+     iter =  2 x =  -3.976  24.827  f(x) = 4.976e+00  9.020e+01
+     iter =  3 x =  -3.976  24.827  f(x) = 4.976e+00  9.020e+01
+     iter =  4 x =  -3.976  24.827  f(x) = 4.976e+00  9.020e+01
+     iter =  5 x =  -1.274  -5.680  f(x) = 2.274e+00 -7.302e+01
+     iter =  6 x =  -1.274  -5.680  f(x) = 2.274e+00 -7.302e+01
+     iter =  7 x =   0.249   0.298  f(x) = 7.511e-01  2.359e+00
+     iter =  8 x =   0.249   0.298  f(x) = 7.511e-01  2.359e+00
+     iter =  9 x =   1.000   0.878  f(x) = 1.268e-10 -1.218e+00
+     iter = 10 x =   1.000   0.989  f(x) = 1.124e-11 -1.080e-01
+     iter = 11 x =   1.000   1.000  f(x) = 0.000e+00  0.000e+00
+     status = success
+
+Note that the algorithm does not update the location on every
+iteration. Some iterations are used to adjust the trust-region
+parameter, after trying a step which was found to be divergent, or to
+recompute the Jacobian, when poor convergence behavior is detected.
+
+   The next example program adds derivative information, in order to
+accelerate the solution. There are two derivative functions
+`rosenbrock_df' and `rosenbrock_fdf'. The latter computes both the
+function and its derivative simultaneously. This allows the
+optimization of any common terms.  For simplicity we substitute calls to
+the separate `f' and `df' functions at this point in the code below.
+
+     int
+     rosenbrock_df (const gsl_vector * x, void *params,
+                    gsl_matrix * J)
+     {
+       const double a = ((struct rparams *) params)->a;
+       const double b = ((struct rparams *) params)->b;
+
+       const double x0 = gsl_vector_get (x, 0);
+
+       const double df00 = -a;
+       const double df01 = 0;
+       const double df10 = -2 * b  * x0;
+       const double df11 = b;
+
+       gsl_matrix_set (J, 0, 0, df00);
+       gsl_matrix_set (J, 0, 1, df01);
+       gsl_matrix_set (J, 1, 0, df10);
+       gsl_matrix_set (J, 1, 1, df11);
+
+       return GSL_SUCCESS;
+     }
+
+     int
+     rosenbrock_fdf (const gsl_vector * x, void *params,
+                     gsl_vector * f, gsl_matrix * J)
+     {
+       rosenbrock_f (x, params, f);
+       rosenbrock_df (x, params, J);
+
+       return GSL_SUCCESS;
+     }
+
+The main program now makes calls to the corresponding `fdfsolver'
+versions of the functions,
+
+     int
+     main (void)
+     {
+       const gsl_multiroot_fdfsolver_type *T;
+       gsl_multiroot_fdfsolver *s;
+
+       int status;
+       size_t i, iter = 0;
+
+       const size_t n = 2;
+       struct rparams p = {1.0, 10.0};
+       gsl_multiroot_function_fdf f = {&rosenbrock_f,
+                                       &rosenbrock_df,
+                                       &rosenbrock_fdf,
+                                       n, &p};
+
+       double x_init[2] = {-10.0, -5.0};
+       gsl_vector *x = gsl_vector_alloc (n);
+
+       gsl_vector_set (x, 0, x_init[0]);
+       gsl_vector_set (x, 1, x_init[1]);
+
+       T = gsl_multiroot_fdfsolver_gnewton;
+       s = gsl_multiroot_fdfsolver_alloc (T, n);
+       gsl_multiroot_fdfsolver_set (s, &f, x);
+
+       print_state (iter, s);
+
+       do
+         {
+           iter++;
+
+           status = gsl_multiroot_fdfsolver_iterate (s);
+
+           print_state (iter, s);
+
+           if (status)
+             break;
+
+           status = gsl_multiroot_test_residual (s->f, 1e-7);
+         }
+       while (status == GSL_CONTINUE && iter < 1000);
+
+       printf ("status = %s\n", gsl_strerror (status));
+
+       gsl_multiroot_fdfsolver_free (s);
+       gsl_vector_free (x);
+       return 0;
+     }
+
+The addition of derivative information to the `hybrids' solver does not
+make any significant difference to its behavior, since it able to
+approximate the Jacobian numerically with sufficient accuracy.  To
+illustrate the behavior of a different derivative solver we switch to
+`gnewton'. This is a traditional Newton solver with the constraint that
+it scales back its step if the full step would lead "uphill". Here is
+the output for the `gnewton' algorithm,
+
+     iter = 0 x = -10.000  -5.000 f(x) =  1.100e+01 -1.050e+03
+     iter = 1 x =  -4.231 -65.317 f(x) =  5.231e+00 -8.321e+02
+     iter = 2 x =   1.000 -26.358 f(x) = -8.882e-16 -2.736e+02
+     iter = 3 x =   1.000   1.000 f(x) = -2.220e-16 -4.441e-15
+     status = success
+
+The convergence is much more rapid, but takes a wide excursion out to
+the point (-4.23,-65.3). This could cause the algorithm to go astray in
+a realistic application.  The hybrid algorithm follows the downhill
+path to the solution more reliably.
+
+\1f
+File: gsl-ref.info,  Node: References and Further Reading for Multidimensional Root Finding,  Prev: Example programs for Multidimensional Root finding,  Up: Multidimensional Root-Finding
+
+35.9 References and Further Reading
+===================================
+
+The original version of the Hybrid method is described in the following
+articles by Powell,
+
+     M.J.D. Powell, "A Hybrid Method for Nonlinear Equations" (Chap 6, p
+     87-114) and "A Fortran Subroutine for Solving systems of Nonlinear
+     Algebraic Equations" (Chap 7, p 115-161), in `Numerical Methods for
+     Nonlinear Algebraic Equations', P. Rabinowitz, editor.  Gordon and
+     Breach, 1970.
+
+The following papers are also relevant to the algorithms described in
+this section,
+
+     J.J. More', M.Y. Cosnard, "Numerical Solution of Nonlinear
+     Equations", `ACM Transactions on Mathematical Software', Vol 5, No
+     1, (1979), p 64-85
+
+     C.G. Broyden, "A Class of Methods for Solving Nonlinear
+     Simultaneous Equations", `Mathematics of Computation', Vol 19
+     (1965), p 577-593
+
+     J.J. More', B.S. Garbow, K.E. Hillstrom, "Testing Unconstrained
+     Optimization Software", ACM Transactions on Mathematical Software,
+     Vol 7, No 1 (1981), p 17-41
+
+\1f
+File: gsl-ref.info,  Node: Multidimensional Minimization,  Next: Least-Squares Fitting,  Prev: Multidimensional Root-Finding,  Up: Top
+
+36 Multidimensional Minimization
+********************************
+
+This chapter describes routines for finding minima of arbitrary
+multidimensional functions.  The library provides low level components
+for a variety of iterative minimizers and convergence tests.  These can
+be combined by the user to achieve the desired solution, while providing
+full access to the intermediate steps of the algorithms.  Each class of
+methods uses the same framework, so that you can switch between
+minimizers at runtime without needing to recompile your program.  Each
+instance of a minimizer keeps track of its own state, allowing the
+minimizers to be used in multi-threaded programs. The minimization
+algorithms can be used to maximize a function by inverting its sign.
+
+   The header file `gsl_multimin.h' contains prototypes for the
+minimization functions and related declarations.
+
+* Menu:
+
+* Multimin Overview::
+* Multimin Caveats::
+* Initializing the Multidimensional Minimizer::
+* Providing a function to minimize::
+* Multimin Iteration::
+* Multimin Stopping Criteria::
+* Multimin Algorithms with Derivatives::
+* Multimin Algorithms without Derivatives::
+* Multimin Examples::
+* Multimin References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Multimin Overview,  Next: Multimin Caveats,  Up: Multidimensional Minimization
+
+36.1 Overview
+=============
+
+The problem of multidimensional minimization requires finding a point x
+such that the scalar function,
+
+     f(x_1, ..., x_n)
+
+takes a value which is lower than at any neighboring point. For smooth
+functions the gradient g = \nabla f vanishes at the minimum. In general
+there are no bracketing methods available for the minimization of
+n-dimensional functions.  The algorithms proceed from an initial guess
+using a search algorithm which attempts to move in a downhill direction.
+
+   Algorithms making use of the gradient of the function perform a
+one-dimensional line minimisation along this direction until the lowest
+point is found to a suitable tolerance.  The search direction is then
+updated with local information from the function and its derivatives,
+and the whole process repeated until the true n-dimensional minimum is
+found.
+
+   Algorithms which do not require the gradient of the function use
+different strategies.  For example, the Nelder-Mead Simplex algorithm
+maintains n+1 trial parameter vectors as the vertices of a
+n-dimensional simplex.  On each iteration it tries to improve the worst
+vertex of the simplex by geometrical transformations.  The iterations
+are continued until the overall size of the simplex has decreased
+sufficiently.
+
+   Both types of algorithms use a standard framework. The user provides
+a high-level driver for the algorithms, and the library provides the
+individual functions necessary for each of the steps.  There are three
+main phases of the iteration.  The steps are,
+
+   * initialize minimizer state, S, for algorithm T
+
+   * update S using the iteration T
+
+   * test S for convergence, and repeat iteration if necessary
+
+Each iteration step consists either of an improvement to the
+line-minimisation in the current direction or an update to the search
+direction itself.  The state for the minimizers is held in a
+`gsl_multimin_fdfminimizer' struct or a `gsl_multimin_fminimizer'
+struct.
+
+\1f
+File: gsl-ref.info,  Node: Multimin Caveats,  Next: Initializing the Multidimensional Minimizer,  Prev: Multimin Overview,  Up: Multidimensional Minimization
+
+36.2 Caveats
+============
+
+Note that the minimization algorithms can only search for one local
+minimum at a time.  When there are several local minima in the search
+area, the first minimum to be found will be returned; however it is
+difficult to predict which of the minima this will be.  In most cases,
+no error will be reported if you try to find a local minimum in an area
+where there is more than one.
+
+   It is also important to note that the minimization algorithms find
+local minima; there is no way to determine whether a minimum is a global
+minimum of the function in question.
+
+\1f
+File: gsl-ref.info,  Node: Initializing the Multidimensional Minimizer,  Next: Providing a function to minimize,  Prev: Multimin Caveats,  Up: Multidimensional Minimization
+
+36.3 Initializing the Multidimensional Minimizer
+================================================
+
+The following function initializes a multidimensional minimizer.  The
+minimizer itself depends only on the dimension of the problem and the
+algorithm and can be reused for different problems.
+
+ -- Function: gsl_multimin_fdfminimizer *
+gsl_multimin_fdfminimizer_alloc (const gsl_multimin_fdfminimizer_type *
+          T, size_t N)
+ -- Function: gsl_multimin_fminimizer * gsl_multimin_fminimizer_alloc
+          (const gsl_multimin_fminimizer_type * T, size_t N)
+     This function returns a pointer to a newly allocated instance of a
+     minimizer of type T for an N-dimension function.  If there is
+     insufficient memory to create the minimizer then the function
+     returns a null pointer and the error handler is invoked with an
+     error code of `GSL_ENOMEM'.
+
+ -- Function: int gsl_multimin_fdfminimizer_set
+          (gsl_multimin_fdfminimizer * S, gsl_multimin_function_fdf *
+          FDF, const gsl_vector * X, double STEP_SIZE, double TOL)
+     This function initializes the minimizer S to minimize the function
+     FDF starting from the initial point X.  The size of the first
+     trial step is given by STEP_SIZE.  The accuracy of the line
+     minimization is specified by TOL.  The precise meaning of this
+     parameter depends on the method used.  Typically the line
+     minimization is considered successful if the gradient of the
+     function g is orthogonal to the current search direction p to a
+     relative accuracy of TOL, where dot(p,g) < tol |p| |g|.  A TOL
+     value of 0.1 is suitable for most purposes, since line
+     minimization only needs to be carried out approximately.    Note
+     that setting TOL to zero will force the use of "exact"
+     line-searches, which are extremely expensive.
+
+ -- Function: int gsl_multimin_fminimizer_set (gsl_multimin_fminimizer
+          * S, gsl_multimin_function * F, const gsl_vector * X, const
+          gsl_vector * STEP_SIZE)
+     This function initializes the minimizer S to minimize the function
+     F, starting from the initial point X. The size of the initial
+     trial steps is given in vector STEP_SIZE. The precise meaning of
+     this parameter depends on the method used.
+
+ -- Function: void gsl_multimin_fdfminimizer_free
+          (gsl_multimin_fdfminimizer * S)
+ -- Function: void gsl_multimin_fminimizer_free
+          (gsl_multimin_fminimizer * S)
+     This function frees all the memory associated with the minimizer S.
+
+ -- Function: const char * gsl_multimin_fdfminimizer_name (const
+          gsl_multimin_fdfminimizer * S)
+ -- Function: const char * gsl_multimin_fminimizer_name (const
+          gsl_multimin_fminimizer * S)
+     This function returns a pointer to the name of the minimizer.  For
+     example,
+
+          printf ("s is a '%s' minimizer\n",
+                  gsl_multimin_fdfminimizer_name (s));
+
+     would print something like `s is a 'conjugate_pr' minimizer'.
+
+\1f
+File: gsl-ref.info,  Node: Providing a function to minimize,  Next: Multimin Iteration,  Prev: Initializing the Multidimensional Minimizer,  Up: Multidimensional Minimization
+
+36.4 Providing a function to minimize
+=====================================
+
+You must provide a parametric function of n variables for the
+minimizers to operate on.  You may also need to provide a routine which
+calculates the gradient of the function and a third routine which
+calculates both the function value and the gradient together.  In order
+to allow for general parameters the functions are defined by the
+following data types:
+
+ -- Data Type: gsl_multimin_function_fdf
+     This data type defines a general function of n variables with
+     parameters and the corresponding gradient vector of derivatives,
+
+    `double (* f) (const gsl_vector * X, void * PARAMS)'
+          this function should return the result f(x,params) for
+          argument X and parameters PARAMS.  If the function cannot be
+          computed, an error value of `GSL_NAN' should be returned.
+
+    `void (* df) (const gsl_vector * X, void * PARAMS, gsl_vector * G)'
+          this function should store the N-dimensional gradient g_i = d
+          f(x,params) / d x_i in the vector G for argument X and
+          parameters PARAMS, returning an appropriate error code if the
+          function cannot be computed.
+
+    `void (* fdf) (const gsl_vector * X, void * PARAMS, double * f, gsl_vector * G)'
+          This function should set the values of the F and G as above,
+          for arguments X and parameters PARAMS.  This function
+          provides an optimization of the separate functions for f(x)
+          and g(x)--it is always faster to compute the function and its
+          derivative at the same time.
+
+    `size_t n'
+          the dimension of the system, i.e. the number of components of
+          the vectors X.
+
+    `void * params'
+          a pointer to the parameters of the function.
+
+ -- Data Type: gsl_multimin_function
+     This data type defines a general function of n variables with
+     parameters,
+
+    `double (* f) (const gsl_vector * X, void * PARAMS)'
+          this function should return the result f(x,params) for
+          argument X and parameters PARAMS.  If the function cannot be
+          computed, an error value of `GSL_NAN' should be returned.
+
+    `size_t n'
+          the dimension of the system, i.e. the number of components of
+          the vectors X.
+
+    `void * params'
+          a pointer to the parameters of the function.
+
+The following example function defines a simple two-dimensional
+paraboloid with five parameters,
+
+     /* Paraboloid centered on (p[0],p[1]), with
+        scale factors (p[2],p[3]) and minimum p[4] */
+
+     double
+     my_f (const gsl_vector *v, void *params)
+     {
+       double x, y;
+       double *p = (double *)params;
+
+       x = gsl_vector_get(v, 0);
+       y = gsl_vector_get(v, 1);
+
+       return p[2] * (x - p[0]) * (x - p[0]) +
+                p[3] * (y - p[1]) * (y - p[1]) + p[4];
+     }
+
+     /* The gradient of f, df = (df/dx, df/dy). */
+     void
+     my_df (const gsl_vector *v, void *params,
+            gsl_vector *df)
+     {
+       double x, y;
+       double *p = (double *)params;
+
+       x = gsl_vector_get(v, 0);
+       y = gsl_vector_get(v, 1);
+
+       gsl_vector_set(df, 0, 2.0 * p[2] * (x - p[0]));
+       gsl_vector_set(df, 1, 2.0 * p[3] * (y - p[1]));
+     }
+
+     /* Compute both f and df together. */
+     void
+     my_fdf (const gsl_vector *x, void *params,
+             double *f, gsl_vector *df)
+     {
+       *f = my_f(x, params);
+       my_df(x, params, df);
+     }
+
+The function can be initialized using the following code,
+
+     gsl_multimin_function_fdf my_func;
+
+     /* Paraboloid center at (1,2), scale factors (10, 20),
+        minimum value 30 */
+     double p[5] = { 1.0, 2.0, 10.0, 20.0, 30.0 };
+
+     my_func.n = 2;  /* number of function components */
+     my_func.f = &my_f;
+     my_func.df = &my_df;
+     my_func.fdf = &my_fdf;
+     my_func.params = (void *)p;
+
+\1f
+File: gsl-ref.info,  Node: Multimin Iteration,  Next: Multimin Stopping Criteria,  Prev: Providing a function to minimize,  Up: Multidimensional Minimization
+
+36.5 Iteration
+==============
+
+The following function drives the iteration of each algorithm.  The
+function performs one iteration to update the state of the minimizer.
+The same function works for all minimizers so that different methods can
+be substituted at runtime without modifications to the code.
+
+ -- Function: int gsl_multimin_fdfminimizer_iterate
+          (gsl_multimin_fdfminimizer * S)
+ -- Function: int gsl_multimin_fminimizer_iterate
+          (gsl_multimin_fminimizer * S)
+     These functions perform a single iteration of the minimizer S.  If
+     the iteration encounters an unexpected problem then an error code
+     will be returned.  The error code `GSL_ENOPROG' signifies that the
+     minimizer is unable to improve on its current estimate, either due
+     to numerical difficulty or because a genuine local minimum has been
+     reached.
+
+The minimizer maintains a current best estimate of the minimum at all
+times.  This information can be accessed with the following auxiliary
+functions,
+
+ -- Function: gsl_vector * gsl_multimin_fdfminimizer_x (const
+          gsl_multimin_fdfminimizer * S)
+ -- Function: gsl_vector * gsl_multimin_fminimizer_x (const
+          gsl_multimin_fminimizer * S)
+ -- Function: double gsl_multimin_fdfminimizer_minimum (const
+          gsl_multimin_fdfminimizer * S)
+ -- Function: double gsl_multimin_fminimizer_minimum (const
+          gsl_multimin_fminimizer * S)
+ -- Function: gsl_vector * gsl_multimin_fdfminimizer_gradient (const
+          gsl_multimin_fdfminimizer * S)
+ -- Function: double gsl_multimin_fminimizer_size (const
+          gsl_multimin_fminimizer * S)
+     These functions return the current best estimate of the location
+     of the minimum, the value of the function at that point, its
+     gradient, and minimizer specific characteristic size for the
+     minimizer S.
+
+ -- Function: int gsl_multimin_fdfminimizer_restart
+          (gsl_multimin_fdfminimizer * S)
+     This function resets the minimizer S to use the current point as a
+     new starting point.
+
+\1f
+File: gsl-ref.info,  Node: Multimin Stopping Criteria,  Next: Multimin Algorithms with Derivatives,  Prev: Multimin Iteration,  Up: Multidimensional Minimization
+
+36.6 Stopping Criteria
+======================
+
+A minimization procedure should stop when one of the following
+conditions is true:
+
+   * A minimum has been found to within the user-specified precision.
+
+   * A user-specified maximum number of iterations has been reached.
+
+   * An error has occurred.
+
+The handling of these conditions is under user control.  The functions
+below allow the user to test the precision of the current result.
+
+ -- Function: int gsl_multimin_test_gradient (const gsl_vector * G,
+          double EPSABS)
+     This function tests the norm of the gradient G against the
+     absolute tolerance EPSABS. The gradient of a multidimensional
+     function goes to zero at a minimum. The test returns `GSL_SUCCESS'
+     if the following condition is achieved,
+
+          |g| < epsabs
+
+     and returns `GSL_CONTINUE' otherwise.  A suitable choice of EPSABS
+     can be made from the desired accuracy in the function for small
+     variations in x.  The relationship between these quantities is
+     given by \delta f = g \delta x.
+
+ -- Function: int gsl_multimin_test_size (const double SIZE, double
+          EPSABS)
+     This function tests the minimizer specific characteristic size (if
+     applicable to the used minimizer) against absolute tolerance
+     EPSABS.  The test returns `GSL_SUCCESS' if the size is smaller
+     than tolerance, otherwise `GSL_CONTINUE' is returned.
+
+\1f
+File: gsl-ref.info,  Node: Multimin Algorithms with Derivatives,  Next: Multimin Algorithms without Derivatives,  Prev: Multimin Stopping Criteria,  Up: Multidimensional Minimization
+
+36.7 Algorithms with Derivatives
+================================
+
+There are several minimization methods available. The best choice of
+algorithm depends on the problem.  The algorithms described in this
+section use the value of the function and its gradient at each
+evaluation point.
+
+ -- Minimizer: gsl_multimin_fdfminimizer_conjugate_fr
+     This is the Fletcher-Reeves conjugate gradient algorithm. The
+     conjugate gradient algorithm proceeds as a succession of line
+     minimizations. The sequence of search directions is used to build
+     up an approximation to the curvature of the function in the
+     neighborhood of the minimum.
+
+     An initial search direction P is chosen using the gradient, and
+     line minimization is carried out in that direction.  The accuracy
+     of the line minimization is specified by the parameter TOL.  The
+     minimum along this line occurs when the function gradient G and
+     the search direction P are orthogonal.  The line minimization
+     terminates when dot(p,g) < tol |p| |g|.  The search direction is
+     updated  using the Fletcher-Reeves formula p' = g' - \beta g where
+     \beta=-|g'|^2/|g|^2, and the line minimization is then repeated
+     for the new search direction.
+
+ -- Minimizer: gsl_multimin_fdfminimizer_conjugate_pr
+     This is the Polak-Ribiere conjugate gradient algorithm.  It is
+     similar to the Fletcher-Reeves method, differing only in the
+     choice of the coefficient \beta. Both methods work well when the
+     evaluation point is close enough to the minimum of the objective
+     function that it is well approximated by a quadratic hypersurface.
+
+ -- Minimizer: gsl_multimin_fdfminimizer_vector_bfgs2
+ -- Minimizer: gsl_multimin_fdfminimizer_vector_bfgs
+     These methods use the vector Broyden-Fletcher-Goldfarb-Shanno
+     (BFGS) algorithm.  This is a quasi-Newton method which builds up
+     an approximation to the second derivatives of the function f using
+     the difference between successive gradient vectors.  By combining
+     the first and second derivatives the algorithm is able to take
+     Newton-type steps towards the function minimum, assuming quadratic
+     behavior in that region.
+
+     The `bfgs2' version of this minimizer is the most efficient
+     version available, and is a faithful implementation of the line
+     minimization scheme described in Fletcher's `Practical Methods of
+     Optimization', Algorithms 2.6.2 and 2.6.4.  It supersedes the
+     original `bfgs' routine and requires substantially fewer function
+     and gradient evaluations.  The user-supplied tolerance TOL
+     corresponds to the parameter \sigma used by Fletcher.  A value of
+     0.1 is recommended for typical use (larger values correspond to
+     less accurate line searches).
+
+
+ -- Minimizer: gsl_multimin_fdfminimizer_steepest_descent
+     The steepest descent algorithm follows the downhill gradient of the
+     function at each step. When a downhill step is successful the
+     step-size is increased by a factor of two.  If the downhill step
+     leads to a higher function value then the algorithm backtracks and
+     the step size is decreased using the parameter TOL.  A suitable
+     value of TOL for most applications is 0.1.  The steepest descent
+     method is inefficient and is included only for demonstration
+     purposes.
+
+\1f
+File: gsl-ref.info,  Node: Multimin Algorithms without Derivatives,  Next: Multimin Examples,  Prev: Multimin Algorithms with Derivatives,  Up: Multidimensional Minimization
+
+36.8 Algorithms without Derivatives
+===================================
+
+The algorithms described in this section use only the value of the
+function at each evaluation point.
+
+ -- Minimizer: gsl_multimin_fminimizer_nmsimplex2
+ -- Minimizer: gsl_multimin_fminimizer_nmsimplex
+     These methods use the Simplex algorithm of Nelder and Mead.
+     Starting from the initial vector X = p_0, the algorithm constructs
+     an additional n vectors p_i using the step size vector s =
+     STEP_SIZE as follows:
+
+          p_0 = (x_0, x_1, ... , x_n)
+          p_1 = (x_0 + s_0, x_1, ... , x_n)
+          p_2 = (x_0, x_1 + s_1, ... , x_n)
+          ... = ...
+          p_n = (x_0, x_1, ... , x_n + s_n)
+
+     These vectors form the n+1 vertices of a simplex in n dimensions.
+     On each iteration the algorithm uses simple geometrical
+     transformations to update the vector corresponding to the highest
+     function value.  The geometric transformations are reflection,
+     reflection followed by expansion, contraction and multiple
+     contraction.  Using these transformations the simplex moves through
+     the space towards the minimum, where it contracts itself.
+
+     After each iteration, the best vertex is returned.  Note, that due
+     to the nature of the algorithm not every step improves the current
+     best parameter vector.  Usually several iterations are required.
+
+     The minimizer-specific characteristic size is calculated as the
+     average distance from the geometrical center of the simplex to all
+     its vertices.  This size can be used as a stopping criteria, as the
+     simplex contracts itself near the minimum. The size is returned by
+     the function `gsl_multimin_fminimizer_size'.
+
+     The `nmsimplex2' version of this minimiser is a new O(N) operations
+     implementation of the earlier O(N^2) operations `nmsimplex'
+     minimiser.  It uses the same underlying algorithm, but the simplex
+     updates are computed more efficiently for high-dimensional
+     problems.  In addition, the size of simplex is calculated as the
+     RMS distance of each vertex from the center rather than the mean
+     distance, allowing a linear update of this quantity on each step.
+     The memory usage is O(N^2) for both algorithms.
+
+ -- Minimizer: gsl_multimin_fminimizer_nmsimplex2rand
+     This method is a variant of `nmsimplex2' which initialises the
+     simplex around the starting point X using a randomly-oriented set
+     of basis vectors instead of the fixed coordinate axes. The final
+     dimensions of the simplex are scaled along the coordinate axes by
+     the vector STEP_SIZE.  The randomisation uses a simple
+     deterministic generator so that repeated calls to
+     `gsl_multimin_fminimizer_set' for a given solver object will vary
+     the orientation in a well-defined way.
+
+\1f
+File: gsl-ref.info,  Node: Multimin Examples,  Next: Multimin References and Further Reading,  Prev: Multimin Algorithms without Derivatives,  Up: Multidimensional Minimization
+
+36.9 Examples
+=============
+
+This example program finds the minimum of the paraboloid function
+defined earlier.  The location of the minimum is offset from the origin
+in x and y, and the function value at the minimum is non-zero. The main
+program is given below, it requires the example function given earlier
+in this chapter.
+
+     int
+     main (void)
+     {
+       size_t iter = 0;
+       int status;
+
+       const gsl_multimin_fdfminimizer_type *T;
+       gsl_multimin_fdfminimizer *s;
+
+       /* Position of the minimum (1,2), scale factors
+          10,20, height 30. */
+       double par[5] = { 1.0, 2.0, 10.0, 20.0, 30.0 };
+
+       gsl_vector *x;
+       gsl_multimin_function_fdf my_func;
+
+       my_func.n = 2;
+       my_func.f = my_f;
+       my_func.df = my_df;
+       my_func.fdf = my_fdf;
+       my_func.params = par;
+
+       /* Starting point, x = (5,7) */
+       x = gsl_vector_alloc (2);
+       gsl_vector_set (x, 0, 5.0);
+       gsl_vector_set (x, 1, 7.0);
+
+       T = gsl_multimin_fdfminimizer_conjugate_fr;
+       s = gsl_multimin_fdfminimizer_alloc (T, 2);
+
+       gsl_multimin_fdfminimizer_set (s, &my_func, x, 0.01, 1e-4);
+
+       do
+         {
+           iter++;
+           status = gsl_multimin_fdfminimizer_iterate (s);
+
+           if (status)
+             break;
+
+           status = gsl_multimin_test_gradient (s->gradient, 1e-3);
+
+           if (status == GSL_SUCCESS)
+             printf ("Minimum found at:\n");
+
+           printf ("%5d %.5f %.5f %10.5f\n", iter,
+                   gsl_vector_get (s->x, 0),
+                   gsl_vector_get (s->x, 1),
+                   s->f);
+
+         }
+       while (status == GSL_CONTINUE && iter < 100);
+
+       gsl_multimin_fdfminimizer_free (s);
+       gsl_vector_free (x);
+
+       return 0;
+     }
+
+The initial step-size is chosen as 0.01, a conservative estimate in this
+case, and the line minimization parameter is set at 0.0001.  The program
+terminates when the norm of the gradient has been reduced below 0.001.
+The output of the program is shown below,
+
+              x       y         f
+         1 4.99629 6.99072  687.84780
+         2 4.98886 6.97215  683.55456
+         3 4.97400 6.93501  675.01278
+         4 4.94429 6.86073  658.10798
+         5 4.88487 6.71217  625.01340
+         6 4.76602 6.41506  561.68440
+         7 4.52833 5.82083  446.46694
+         8 4.05295 4.63238  261.79422
+         9 3.10219 2.25548   75.49762
+        10 2.85185 1.62963   67.03704
+        11 2.19088 1.76182   45.31640
+        12 0.86892 2.02622   30.18555
+     Minimum found at:
+        13 1.00000 2.00000   30.00000
+
+Note that the algorithm gradually increases the step size as it
+successfully moves downhill, as can be seen by plotting the successive
+points.
+
+The conjugate gradient algorithm finds the minimum on its second
+direction because the function is purely quadratic. Additional
+iterations would be needed for a more complicated function.
+
+   Here is another example using the Nelder-Mead Simplex algorithm to
+minimize the same example object function, as above.
+
+     int
+     main(void)
+     {
+       double par[5] = {1.0, 2.0, 10.0, 20.0, 30.0};
+
+       const gsl_multimin_fminimizer_type *T =
+         gsl_multimin_fminimizer_nmsimplex2;
+       gsl_multimin_fminimizer *s = NULL;
+       gsl_vector *ss, *x;
+       gsl_multimin_function minex_func;
+
+       size_t iter = 0;
+       int status;
+       double size;
+
+       /* Starting point */
+       x = gsl_vector_alloc (2);
+       gsl_vector_set (x, 0, 5.0);
+       gsl_vector_set (x, 1, 7.0);
+
+       /* Set initial step sizes to 1 */
+       ss = gsl_vector_alloc (2);
+       gsl_vector_set_all (ss, 1.0);
+
+       /* Initialize method and iterate */
+       minex_func.n = 2;
+       minex_func.f = my_f;
+       minex_func.params = par;
+
+       s = gsl_multimin_fminimizer_alloc (T, 2);
+       gsl_multimin_fminimizer_set (s, &minex_func, x, ss);
+
+       do
+         {
+           iter++;
+           status = gsl_multimin_fminimizer_iterate(s);
+
+           if (status)
+             break;
+
+           size = gsl_multimin_fminimizer_size (s);
+           status = gsl_multimin_test_size (size, 1e-2);
+
+           if (status == GSL_SUCCESS)
+             {
+               printf ("converged to minimum at\n");
+             }
+
+           printf ("%5d %10.3e %10.3e f() = %7.3f size = %.3f\n",
+                   iter,
+                   gsl_vector_get (s->x, 0),
+                   gsl_vector_get (s->x, 1),
+                   s->fval, size);
+         }
+       while (status == GSL_CONTINUE && iter < 100);
+
+       gsl_vector_free(x);
+       gsl_vector_free(ss);
+       gsl_multimin_fminimizer_free (s);
+
+       return status;
+     }
+
+The minimum search stops when the Simplex size drops to 0.01. The
+output is shown below.
+
+         1  6.500e+00  5.000e+00 f() = 512.500 size = 1.130
+         2  5.250e+00  4.000e+00 f() = 290.625 size = 1.409
+         3  5.250e+00  4.000e+00 f() = 290.625 size = 1.409
+         4  5.500e+00  1.000e+00 f() = 252.500 size = 1.409
+         5  2.625e+00  3.500e+00 f() = 101.406 size = 1.847
+         6  2.625e+00  3.500e+00 f() = 101.406 size = 1.847
+         7  0.000e+00  3.000e+00 f() =  60.000 size = 1.847
+         8  2.094e+00  1.875e+00 f() =  42.275 size = 1.321
+         9  2.578e-01  1.906e+00 f() =  35.684 size = 1.069
+        10  5.879e-01  2.445e+00 f() =  35.664 size = 0.841
+        11  1.258e+00  2.025e+00 f() =  30.680 size = 0.476
+        12  1.258e+00  2.025e+00 f() =  30.680 size = 0.367
+        13  1.093e+00  1.849e+00 f() =  30.539 size = 0.300
+        14  8.830e-01  2.004e+00 f() =  30.137 size = 0.172
+        15  8.830e-01  2.004e+00 f() =  30.137 size = 0.126
+        16  9.582e-01  2.060e+00 f() =  30.090 size = 0.106
+        17  1.022e+00  2.004e+00 f() =  30.005 size = 0.063
+        18  1.022e+00  2.004e+00 f() =  30.005 size = 0.043
+        19  1.022e+00  2.004e+00 f() =  30.005 size = 0.043
+        20  1.022e+00  2.004e+00 f() =  30.005 size = 0.027
+        21  1.022e+00  2.004e+00 f() =  30.005 size = 0.022
+        22  9.920e-01  1.997e+00 f() =  30.001 size = 0.016
+        23  9.920e-01  1.997e+00 f() =  30.001 size = 0.013
+     converged to minimum at
+        24  9.920e-01  1.997e+00 f() =  30.001 size = 0.008
+
+The simplex size first increases, while the simplex moves towards the
+minimum. After a while the size begins to decrease as the simplex
+contracts around the minimum.
+
+\1f
+File: gsl-ref.info,  Node: Multimin References and Further Reading,  Prev: Multimin Examples,  Up: Multidimensional Minimization
+
+36.10 References and Further Reading
+====================================
+
+The conjugate gradient and BFGS methods are described in detail in the
+following book,
+
+     R. Fletcher, `Practical Methods of Optimization (Second Edition)'
+     Wiley (1987), ISBN 0471915475.
+
+   A brief description of multidimensional minimization algorithms and
+more recent references can be found in,
+
+     C.W. Ueberhuber, `Numerical Computation (Volume 2)', Chapter 14,
+     Section 4.4 "Minimization Methods", p. 325-335, Springer (1997),
+     ISBN 3-540-62057-5.
+
+The simplex algorithm is described in the following paper,
+
+     J.A. Nelder and R. Mead, `A simplex method for function
+     minimization', Computer Journal vol. 7 (1965), 308-313.
+
+
+\1f
+File: gsl-ref.info,  Node: Least-Squares Fitting,  Next: Nonlinear Least-Squares Fitting,  Prev: Multidimensional Minimization,  Up: Top
+
+37 Least-Squares Fitting
+************************
+
+This chapter describes routines for performing least squares fits to
+experimental data using linear combinations of functions.  The data may
+be weighted or unweighted, i.e. with known or unknown errors.  For
+weighted data the functions compute the best fit parameters and their
+associated covariance matrix.  For unweighted data the covariance
+matrix is estimated from the scatter of the points, giving a
+variance-covariance matrix.
+
+   The functions are divided into separate versions for simple one- or
+two-parameter regression and multiple-parameter fits.  The functions
+are declared in the header file `gsl_fit.h'.
+
+* Menu:
+
+* Fitting Overview::
+* Linear regression::
+* Linear fitting without a constant term::
+* Multi-parameter fitting::
+* Fitting Examples::
+* Fitting References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Fitting Overview,  Next: Linear regression,  Up: Least-Squares Fitting
+
+37.1 Overview
+=============
+
+Least-squares fits are found by minimizing \chi^2 (chi-squared), the
+weighted sum of squared residuals over n experimental datapoints (x_i,
+y_i) for the model Y(c,x),
+
+     \chi^2 = \sum_i w_i (y_i - Y(c, x_i))^2
+
+The p parameters of the model are c = {c_0, c_1, ...}.  The weight
+factors w_i are given by w_i = 1/\sigma_i^2, where \sigma_i is the
+experimental error on the data-point y_i.  The errors are assumed to be
+Gaussian and uncorrelated.  For unweighted data the chi-squared sum is
+computed without any weight factors.
+
+   The fitting routines return the best-fit parameters c and their p
+\times p covariance matrix.  The covariance matrix measures the
+statistical errors on the best-fit parameters resulting from the errors
+on the data, \sigma_i, and is defined as C_{ab} = <\delta c_a \delta
+c_b> where < > denotes an average over the Gaussian error distributions
+of the underlying datapoints.
+
+   The covariance matrix is calculated by error propagation from the
+data errors \sigma_i.  The change in a fitted parameter \delta c_a
+caused by a small change in the data \delta y_i is given by
+
+     \delta c_a = \sum_i (dc_a/dy_i) \delta y_i
+
+allowing the covariance matrix to be written in terms of the errors on
+the data,
+
+     C_{ab} = \sum_{i,j} (dc_a/dy_i) (dc_b/dy_j) <\delta y_i \delta y_j>
+
+For uncorrelated data the fluctuations of the underlying datapoints
+satisfy <\delta y_i \delta y_j> = \sigma_i^2 \delta_{ij}, giving a
+corresponding parameter covariance matrix of
+
+     C_{ab} = \sum_i (1/w_i) (dc_a/dy_i) (dc_b/dy_i)
+
+When computing the covariance matrix for unweighted data, i.e. data
+with unknown errors, the weight factors w_i in this sum are replaced by
+the single estimate w = 1/\sigma^2, where \sigma^2 is the computed
+variance of the residuals about the best-fit model, \sigma^2 = \sum
+(y_i - Y(c,x_i))^2 / (n-p).  This is referred to as the
+"variance-covariance matrix".  
+
+   The standard deviations of the best-fit parameters are given by the
+square root of the corresponding diagonal elements of the covariance
+matrix, \sigma_{c_a} = \sqrt{C_{aa}}.  The correlation coefficient of
+the fit parameters c_a and c_b is given by \rho_{ab} = C_{ab} /
+\sqrt{C_{aa} C_{bb}}.
+
+\1f
+File: gsl-ref.info,  Node: Linear regression,  Next: Linear fitting without a constant term,  Prev: Fitting Overview,  Up: Least-Squares Fitting
+
+37.2 Linear regression
+======================
+
+The functions described in this section can be used to perform
+least-squares fits to a straight line model, Y(c,x) = c_0 + c_1 x.
+
+ -- Function: int gsl_fit_linear (const double * X, const size_t
+          XSTRIDE, const double * Y, const size_t YSTRIDE, size_t N,
+          double * C0, double * C1, double * COV00, double * COV01,
+          double * COV11, double * SUMSQ)
+     This function computes the best-fit linear regression coefficients
+     (C0,C1) of the model Y = c_0 + c_1 X for the dataset (X, Y), two
+     vectors of length N with strides XSTRIDE and YSTRIDE.  The errors
+     on Y are assumed unknown so the variance-covariance matrix for the
+     parameters (C0, C1) is estimated from the scatter of the points
+     around the best-fit line and returned via the parameters (COV00,
+     COV01, COV11).  The sum of squares of the residuals from the
+     best-fit line is returned in SUMSQ.  Note: the correlation
+     coefficient of the data can be computed using
+     `gsl_stats_correlation' (*note Correlation::), it does not depend
+     on the fit.
+
+ -- Function: int gsl_fit_wlinear (const double * X, const size_t
+          XSTRIDE, const double * W, const size_t WSTRIDE, const double
+          * Y, const size_t YSTRIDE, size_t N, double * C0, double *
+          C1, double * COV00, double * COV01, double * COV11, double *
+          CHISQ)
+     This function computes the best-fit linear regression coefficients
+     (C0,C1) of the model Y = c_0 + c_1 X for the weighted dataset (X,
+     Y), two vectors of length N with strides XSTRIDE and YSTRIDE.  The
+     vector W, of length N and stride WSTRIDE, specifies the weight of
+     each datapoint. The weight is the reciprocal of the variance for
+     each datapoint in Y.
+
+     The covariance matrix for the parameters (C0, C1) is computed
+     using the weights and returned via the parameters (COV00, COV01,
+     COV11).  The weighted sum of squares of the residuals from the
+     best-fit line, \chi^2, is returned in CHISQ.
+
+ -- Function: int gsl_fit_linear_est (double X, double C0, double C1,
+          double COV00, double COV01, double COV11, double * Y, double
+          * Y_ERR)
+     This function uses the best-fit linear regression coefficients C0,
+     C1 and their covariance COV00, COV01, COV11 to compute the fitted
+     function Y and its standard deviation Y_ERR for the model Y = c_0
+     + c_1 X at the point X.
+
+\1f
+File: gsl-ref.info,  Node: Linear fitting without a constant term,  Next: Multi-parameter fitting,  Prev: Linear regression,  Up: Least-Squares Fitting
+
+37.3 Linear fitting without a constant term
+===========================================
+
+The functions described in this section can be used to perform
+least-squares fits to a straight line model without a constant term, Y
+= c_1 X.
+
+ -- Function: int gsl_fit_mul (const double * X, const size_t XSTRIDE,
+          const double * Y, const size_t YSTRIDE, size_t N, double *
+          C1, double * COV11, double * SUMSQ)
+     This function computes the best-fit linear regression coefficient
+     C1 of the model Y = c_1 X for the datasets (X, Y), two vectors of
+     length N with strides XSTRIDE and YSTRIDE.  The errors on Y are
+     assumed unknown so the variance of the parameter C1 is estimated
+     from the scatter of the points around the best-fit line and
+     returned via the parameter COV11.  The sum of squares of the
+     residuals from the best-fit line is returned in SUMSQ.
+
+ -- Function: int gsl_fit_wmul (const double * X, const size_t XSTRIDE,
+          const double * W, const size_t WSTRIDE, const double * Y,
+          const size_t YSTRIDE, size_t N, double * C1, double * COV11,
+          double * SUMSQ)
+     This function computes the best-fit linear regression coefficient
+     C1 of the model Y = c_1 X for the weighted datasets (X, Y), two
+     vectors of length N with strides XSTRIDE and YSTRIDE.  The vector
+     W, of length N and stride WSTRIDE, specifies the weight of each
+     datapoint. The weight is the reciprocal of the variance for each
+     datapoint in Y.
+
+     The variance of the parameter C1 is computed using the weights and
+     returned via the parameter COV11.  The weighted sum of squares of
+     the residuals from the best-fit line, \chi^2, is returned in CHISQ.
+
+ -- Function: int gsl_fit_mul_est (double X, double C1, double COV11,
+          double * Y, double * Y_ERR)
+     This function uses the best-fit linear regression coefficient C1
+     and its covariance COV11 to compute the fitted function Y and its
+     standard deviation Y_ERR for the model Y = c_1 X at the point X.
+
+\1f
+File: gsl-ref.info,  Node: Multi-parameter fitting,  Next: Fitting Examples,  Prev: Linear fitting without a constant term,  Up: Least-Squares Fitting
+
+37.4 Multi-parameter fitting
+============================
+
+The functions described in this section perform least-squares fits to a
+general linear model, y = X c where y is a vector of n observations, X
+is an n by p matrix of predictor variables, and the elements of the
+vector c are the p unknown best-fit parameters which are to be
+estimated.  The chi-squared value is given by \chi^2 = \sum_i w_i (y_i
+- \sum_j X_{ij} c_j)^2.
+
+   This formulation can be used for fits to any number of functions
+and/or variables by preparing the n-by-p matrix X appropriately.  For
+example, to fit to a p-th order polynomial in X, use the following
+matrix,
+
+     X_{ij} = x_i^j
+
+where the index i runs over the observations and the index j runs from
+0 to p-1.
+
+   To fit to a set of p sinusoidal functions with fixed frequencies
+\omega_1, \omega_2, ..., \omega_p, use,
+
+     X_{ij} = sin(\omega_j x_i)
+
+To fit to p independent variables x_1, x_2, ..., x_p, use,
+
+     X_{ij} = x_j(i)
+
+where x_j(i) is the i-th value of the predictor variable x_j.
+
+   The functions described in this section are declared in the header
+file `gsl_multifit.h'.
+
+   The solution of the general linear least-squares system requires an
+additional working space for intermediate results, such as the singular
+value decomposition of the matrix X.
+
+ -- Function: gsl_multifit_linear_workspace * gsl_multifit_linear_alloc
+          (size_t N, size_t P)
+     This function allocates a workspace for fitting a model to N
+     observations using P parameters.
+
+ -- Function: void gsl_multifit_linear_free
+          (gsl_multifit_linear_workspace * WORK)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: int gsl_multifit_linear (const gsl_matrix * X, const
+          gsl_vector * Y, gsl_vector * C, gsl_matrix * COV, double *
+          CHISQ, gsl_multifit_linear_workspace * WORK)
+     This function computes the best-fit parameters C of the model y =
+     X c for the observations Y and the matrix of predictor variables
+     X, using the preallocated workspace provided in WORK.  The
+     variance-covariance matrix of the model parameters COV is
+     estimated from the scatter of the observations about the best-fit.
+     The sum of squares of the residuals from the best-fit, \chi^2, is
+     returned in CHISQ. If the coefficient of determination is desired,
+     it can be computed from the expression R^2 = 1 - \chi^2 / TSS,
+     where the total sum of squares (TSS) of the observations Y may be
+     computed from `gsl_stats_tss'.
+
+     The best-fit is found by singular value decomposition of the matrix
+     X using the modified Golub-Reinsch SVD algorithm, with column
+     scaling to improve the accuracy of the singular values. Any
+     components which have zero singular value (to machine precision)
+     are discarded from the fit.
+
+ -- Function: int gsl_multifit_wlinear (const gsl_matrix * X, const
+          gsl_vector * W, const gsl_vector * Y, gsl_vector * C,
+          gsl_matrix * COV, double * CHISQ,
+          gsl_multifit_linear_workspace * WORK)
+     This function computes the best-fit parameters C of the weighted
+     model y = X c for the observations Y with weights W and the matrix
+     of predictor variables X, using the preallocated workspace
+     provided in WORK.  The covariance matrix of the model parameters
+     COV is computed with the given weights.  The weighted sum of
+     squares of the residuals from the best-fit, \chi^2, is returned in
+     CHISQ. If the coefficient of determination is desired, it can be
+     computed from the expression R^2 = 1 - \chi^2 / WTSS, where the
+     weighted total sum of squares (WTSS) of the observations Y may be
+     computed from `gsl_stats_wtss'.
+
+ -- Function: int gsl_multifit_linear_svd (const gsl_matrix * X, const
+          gsl_vector * Y, double TOL, size_t * RANK, gsl_vector * C,
+          gsl_matrix * COV, double * CHISQ,
+          gsl_multifit_linear_workspace * WORK)
+ -- Function: int gsl_multifit_wlinear_svd (const gsl_matrix * X, const
+          gsl_vector * W, const gsl_vector * Y, double TOL, size_t *
+          RANK, gsl_vector * C, gsl_matrix * COV, double * CHISQ,
+          gsl_multifit_linear_workspace * WORK)
+     In these functions components of the fit are discarded if the
+     ratio of singular values s_i/s_0 falls below the user-specified
+     tolerance TOL, and the effective rank is returned in RANK.
+
+ -- Function: int gsl_multifit_linear_usvd (const gsl_matrix * X, const
+          gsl_vector * Y, double TOL, size_t * RANK, gsl_vector * C,
+          gsl_matrix * COV, double * CHISQ,
+          gsl_multifit_linear_workspace * WORK)
+ -- Function: int gsl_multifit_wlinear_usvd (const gsl_matrix * X,
+          const gsl_vector * W, const gsl_vector * Y, double TOL,
+          size_t * RANK, gsl_vector * C, gsl_matrix * COV, double *
+          CHISQ, gsl_multifit_linear_workspace * WORK)
+     These functions compute the fit using an SVD without column
+     scaling.
+
+ -- Function: int gsl_multifit_linear_est (const gsl_vector * X, const
+          gsl_vector * C, const gsl_matrix * COV, double * Y, double *
+          Y_ERR)
+     This function uses the best-fit multilinear regression coefficients
+     C and their covariance matrix COV to compute the fitted function
+     value Y and its standard deviation Y_ERR for the model y = x.c at
+     the point X.
+
+ -- Function: int gsl_multifit_linear_residuals (const gsl_matrix * X,
+          const gsl_vector * Y, const gsl_vector * C, gsl_vector * R)
+     This function computes the vector of residuals r = y - X c for the
+     observations Y, coefficients C and matrix of predictor variables X.
+
+\1f
+File: gsl-ref.info,  Node: Fitting Examples,  Next: Fitting References and Further Reading,  Prev: Multi-parameter fitting,  Up: Least-Squares Fitting
+
+37.5 Examples
+=============
+
+The following program computes a least squares straight-line fit to a
+simple dataset, and outputs the best-fit line and its associated one
+standard-deviation error bars.
+
+     #include <stdio.h>
+     #include <gsl/gsl_fit.h>
+
+     int
+     main (void)
+     {
+       int i, n = 4;
+       double x[4] = { 1970, 1980, 1990, 2000 };
+       double y[4] = {   12,   11,   14,   13 };
+       double w[4] = {  0.1,  0.2,  0.3,  0.4 };
+
+       double c0, c1, cov00, cov01, cov11, chisq;
+
+       gsl_fit_wlinear (x, 1, w, 1, y, 1, n,
+                        &c0, &c1, &cov00, &cov01, &cov11,
+                        &chisq);
+
+       printf ("# best fit: Y = %g + %g X\n", c0, c1);
+       printf ("# covariance matrix:\n");
+       printf ("# [ %g, %g\n#   %g, %g]\n",
+               cov00, cov01, cov01, cov11);
+       printf ("# chisq = %g\n", chisq);
+
+       for (i = 0; i < n; i++)
+         printf ("data: %g %g %g\n",
+                        x[i], y[i], 1/sqrt(w[i]));
+
+       printf ("\n");
+
+       for (i = -30; i < 130; i++)
+         {
+           double xf = x[0] + (i/100.0) * (x[n-1] - x[0]);
+           double yf, yf_err;
+
+           gsl_fit_linear_est (xf,
+                               c0, c1,
+                               cov00, cov01, cov11,
+                               &yf, &yf_err);
+
+           printf ("fit: %g %g\n", xf, yf);
+           printf ("hi : %g %g\n", xf, yf + yf_err);
+           printf ("lo : %g %g\n", xf, yf - yf_err);
+         }
+       return 0;
+     }
+
+The following commands extract the data from the output of the program
+and display it using the GNU plotutils `graph' utility,
+
+     $ ./demo > tmp
+     $ more tmp
+     # best fit: Y = -106.6 + 0.06 X
+     # covariance matrix:
+     # [ 39602, -19.9
+     #   -19.9, 0.01]
+     # chisq = 0.8
+
+     $ for n in data fit hi lo ;
+        do
+          grep "^$n" tmp | cut -d: -f2 > $n ;
+        done
+     $ graph -T X -X x -Y y -y 0 20 -m 0 -S 2 -Ie data
+          -S 0 -I a -m 1 fit -m 2 hi -m 2 lo
+
+   The next program performs a quadratic fit y = c_0 + c_1 x + c_2 x^2
+to a weighted dataset using the generalised linear fitting function
+`gsl_multifit_wlinear'.  The model matrix X for a quadratic fit is
+given by,
+
+     X = [ 1   , x_0  , x_0^2 ;
+           1   , x_1  , x_1^2 ;
+           1   , x_2  , x_2^2 ;
+           ... , ...  , ...   ]
+
+where the column of ones corresponds to the constant term c_0.  The two
+remaining columns corresponds to the terms c_1 x and c_2 x^2.
+
+   The program reads N lines of data in the format (X, Y, ERR) where
+ERR is the error (standard deviation) in the value Y.
+
+     #include <stdio.h>
+     #include <gsl/gsl_multifit.h>
+
+     int
+     main (int argc, char **argv)
+     {
+       int i, n;
+       double xi, yi, ei, chisq;
+       gsl_matrix *X, *cov;
+       gsl_vector *y, *w, *c;
+
+       if (argc != 2)
+         {
+           fprintf (stderr,"usage: fit n < data\n");
+           exit (-1);
+         }
+
+       n = atoi (argv[1]);
+
+       X = gsl_matrix_alloc (n, 3);
+       y = gsl_vector_alloc (n);
+       w = gsl_vector_alloc (n);
+
+       c = gsl_vector_alloc (3);
+       cov = gsl_matrix_alloc (3, 3);
+
+       for (i = 0; i < n; i++)
+         {
+           int count = fscanf (stdin, "%lg %lg %lg",
+                               &xi, &yi, &ei);
+
+           if (count != 3)
+             {
+               fprintf (stderr, "error reading file\n");
+               exit (-1);
+             }
+
+           printf ("%g %g +/- %g\n", xi, yi, ei);
+
+           gsl_matrix_set (X, i, 0, 1.0);
+           gsl_matrix_set (X, i, 1, xi);
+           gsl_matrix_set (X, i, 2, xi*xi);
+
+           gsl_vector_set (y, i, yi);
+           gsl_vector_set (w, i, 1.0/(ei*ei));
+         }
+
+       {
+         gsl_multifit_linear_workspace * work
+           = gsl_multifit_linear_alloc (n, 3);
+         gsl_multifit_wlinear (X, w, y, c, cov,
+                               &chisq, work);
+         gsl_multifit_linear_free (work);
+       }
+
+     #define C(i) (gsl_vector_get(c,(i)))
+     #define COV(i,j) (gsl_matrix_get(cov,(i),(j)))
+
+       {
+         printf ("# best fit: Y = %g + %g X + %g X^2\n",
+                 C(0), C(1), C(2));
+
+         printf ("# covariance matrix:\n");
+         printf ("[ %+.5e, %+.5e, %+.5e  \n",
+                    COV(0,0), COV(0,1), COV(0,2));
+         printf ("  %+.5e, %+.5e, %+.5e  \n",
+                    COV(1,0), COV(1,1), COV(1,2));
+         printf ("  %+.5e, %+.5e, %+.5e ]\n",
+                    COV(2,0), COV(2,1), COV(2,2));
+         printf ("# chisq = %g\n", chisq);
+       }
+
+       gsl_matrix_free (X);
+       gsl_vector_free (y);
+       gsl_vector_free (w);
+       gsl_vector_free (c);
+       gsl_matrix_free (cov);
+
+       return 0;
+     }
+
+A suitable set of data for fitting can be generated using the following
+program.  It outputs a set of points with gaussian errors from the curve
+y = e^x in the region 0 < x < 2.
+
+     #include <stdio.h>
+     #include <math.h>
+     #include <gsl/gsl_randist.h>
+
+     int
+     main (void)
+     {
+       double x;
+       const gsl_rng_type * T;
+       gsl_rng * r;
+
+       gsl_rng_env_setup ();
+
+       T = gsl_rng_default;
+       r = gsl_rng_alloc (T);
+
+       for (x = 0.1; x < 2; x+= 0.1)
+         {
+           double y0 = exp (x);
+           double sigma = 0.1 * y0;
+           double dy = gsl_ran_gaussian (r, sigma);
+
+           printf ("%g %g %g\n", x, y0 + dy, sigma);
+         }
+
+       gsl_rng_free(r);
+
+       return 0;
+     }
+
+The data can be prepared by running the resulting executable program,
+
+     $ ./generate > exp.dat
+     $ more exp.dat
+     0.1 0.97935 0.110517
+     0.2 1.3359 0.12214
+     0.3 1.52573 0.134986
+     0.4 1.60318 0.149182
+     0.5 1.81731 0.164872
+     0.6 1.92475 0.182212
+     ....
+
+To fit the data use the previous program, with the number of data points
+given as the first argument.  In this case there are 19 data points.
+
+     $ ./fit 19 < exp.dat
+     0.1 0.97935 +/- 0.110517
+     0.2 1.3359 +/- 0.12214
+     ...
+     # best fit: Y = 1.02318 + 0.956201 X + 0.876796 X^2
+     # covariance matrix:
+     [ +1.25612e-02, -3.64387e-02, +1.94389e-02
+       -3.64387e-02, +1.42339e-01, -8.48761e-02
+       +1.94389e-02, -8.48761e-02, +5.60243e-02 ]
+     # chisq = 23.0987
+
+The parameters of the quadratic fit match the coefficients of the
+expansion of e^x, taking into account the errors on the parameters and
+the O(x^3) difference between the exponential and quadratic functions
+for the larger values of x.  The errors on the parameters are given by
+the square-root of the corresponding diagonal elements of the
+covariance matrix.  The chi-squared per degree of freedom is 1.4,
+indicating a reasonable fit to the data.
+
+\1f
+File: gsl-ref.info,  Node: Fitting References and Further Reading,  Prev: Fitting Examples,  Up: Least-Squares Fitting
+
+37.6 References and Further Reading
+===================================
+
+A summary of formulas and techniques for least squares fitting can be
+found in the "Statistics" chapter of the Annual Review of Particle
+Physics prepared by the Particle Data Group,
+
+     `Review of Particle Properties', R.M. Barnett et al., Physical
+     Review D54, 1 (1996) `http://pdg.lbl.gov/'
+
+The Review of Particle Physics is available online at the website given
+above.
+
+   The tests used to prepare these routines are based on the NIST
+Statistical Reference Datasets. The datasets and their documentation are
+available from NIST at the following website,
+
+           `http://www.nist.gov/itl/div898/strd/index.html'.
+
+\1f
+File: gsl-ref.info,  Node: Nonlinear Least-Squares Fitting,  Next: Basis Splines,  Prev: Least-Squares Fitting,  Up: Top
+
+38 Nonlinear Least-Squares Fitting
+**********************************
+
+This chapter describes functions for multidimensional nonlinear
+least-squares fitting.  The library provides low level components for a
+variety of iterative solvers and convergence tests.  These can be
+combined by the user to achieve the desired solution, with full access
+to the intermediate steps of the iteration.  Each class of methods uses
+the same framework, so that you can switch between solvers at runtime
+without needing to recompile your program.  Each instance of a solver
+keeps track of its own state, allowing the solvers to be used in
+multi-threaded programs.
+
+   The header file `gsl_multifit_nlin.h' contains prototypes for the
+multidimensional nonlinear fitting functions and related declarations.
+
+* Menu:
+
+* Overview of Nonlinear Least-Squares Fitting::
+* Initializing the Nonlinear Least-Squares Solver::
+* Providing the Function to be Minimized::
+* Iteration of the Minimization Algorithm::
+* Search Stopping Parameters for Minimization Algorithms::
+* Minimization Algorithms using Derivatives::
+* Minimization Algorithms without Derivatives::
+* Computing the covariance matrix of best fit parameters::
+* Example programs for Nonlinear Least-Squares Fitting::
+* References and Further Reading for Nonlinear Least-Squares Fitting::
+
+\1f
+File: gsl-ref.info,  Node: Overview of Nonlinear Least-Squares Fitting,  Next: Initializing the Nonlinear Least-Squares Solver,  Up: Nonlinear Least-Squares Fitting
+
+38.1 Overview
+=============
+
+The problem of multidimensional nonlinear least-squares fitting requires
+the minimization of the squared residuals of n functions, f_i, in p
+parameters, x_i,
+
+     \Phi(x) = (1/2) || F(x) ||^2
+             = (1/2) \sum_{i=1}^{n} f_i(x_1, ..., x_p)^2
+
+All algorithms proceed from an initial guess using the linearization,
+
+     \psi(p) = || F(x+p) || ~=~ || F(x) + J p ||
+
+where x is the initial point, p is the proposed step and J is the
+Jacobian matrix J_{ij} = d f_i / d x_j.  Additional strategies are used
+to enlarge the region of convergence.  These include requiring a
+decrease in the norm ||F|| on each step or using a trust region to
+avoid steps which fall outside the linear regime.
+
+   To perform a weighted least-squares fit of a nonlinear model Y(x,t)
+to data (t_i, y_i) with independent Gaussian errors \sigma_i, use
+function components of the following form,
+
+     f_i = (Y(x, t_i) - y_i) / \sigma_i
+
+Note that the model parameters are denoted by x in this chapter since
+the non-linear least-squares algorithms are described geometrically
+(i.e. finding the minimum of a surface).  The independent variable of
+any data to be fitted is denoted by t.
+
+   With the definition above the Jacobian is J_{ij} =(1 / \sigma_i)  d
+Y_i / d x_j, where Y_i = Y(x,t_i).
+
+\1f
+File: gsl-ref.info,  Node: Initializing the Nonlinear Least-Squares Solver,  Next: Providing the Function to be Minimized,  Prev: Overview of Nonlinear Least-Squares Fitting,  Up: Nonlinear Least-Squares Fitting
+
+38.2 Initializing the Solver
+============================
+
+ -- Function: gsl_multifit_fsolver * gsl_multifit_fsolver_alloc (const
+          gsl_multifit_fsolver_type * T, size_t N, size_t P)
+     This function returns a pointer to a newly allocated instance of a
+     solver of type T for N observations and P parameters.  The number
+     of observations N must be greater than or equal to parameters P.
+
+     If there is insufficient memory to create the solver then the
+     function returns a null pointer and the error handler is invoked
+     with an error code of `GSL_ENOMEM'.
+
+ -- Function: gsl_multifit_fdfsolver * gsl_multifit_fdfsolver_alloc
+          (const gsl_multifit_fdfsolver_type * T, size_t N, size_t P)
+     This function returns a pointer to a newly allocated instance of a
+     derivative solver of type T for N observations and P parameters.
+     For example, the following code creates an instance of a
+     Levenberg-Marquardt solver for 100 data points and 3 parameters,
+
+          const gsl_multifit_fdfsolver_type * T
+              = gsl_multifit_fdfsolver_lmder;
+          gsl_multifit_fdfsolver * s
+              = gsl_multifit_fdfsolver_alloc (T, 100, 3);
+
+     The number of observations N must be greater than or equal to
+     parameters P.
+
+     If there is insufficient memory to create the solver then the
+     function returns a null pointer and the error handler is invoked
+     with an error code of `GSL_ENOMEM'.
+
+ -- Function: int gsl_multifit_fsolver_set (gsl_multifit_fsolver * S,
+          gsl_multifit_function * F, const gsl_vector * X)
+     This function initializes, or reinitializes, an existing solver S
+     to use the function F and the initial guess X.
+
+ -- Function: int gsl_multifit_fdfsolver_set (gsl_multifit_fdfsolver *
+          S, gsl_multifit_function_fdf * FDF, const gsl_vector * X)
+     This function initializes, or reinitializes, an existing solver S
+     to use the function and derivative FDF and the initial guess X.
+
+ -- Function: void gsl_multifit_fsolver_free (gsl_multifit_fsolver * S)
+ -- Function: void gsl_multifit_fdfsolver_free (gsl_multifit_fdfsolver
+          * S)
+     These functions free all the memory associated with the solver S.
+
+ -- Function: const char * gsl_multifit_fsolver_name (const
+          gsl_multifit_fsolver * S)
+ -- Function: const char * gsl_multifit_fdfsolver_name (const
+          gsl_multifit_fdfsolver * S)
+     These functions return a pointer to the name of the solver.  For
+     example,
+
+          printf ("s is a '%s' solver\n",
+                  gsl_multifit_fdfsolver_name (s));
+
+     would print something like `s is a 'lmder' solver'.
+
+\1f
+File: gsl-ref.info,  Node: Providing the Function to be Minimized,  Next: Iteration of the Minimization Algorithm,  Prev: Initializing the Nonlinear Least-Squares Solver,  Up: Nonlinear Least-Squares Fitting
+
+38.3 Providing the Function to be Minimized
+===========================================
+
+You must provide n functions of p variables for the minimization
+algorithms to operate on.  In order to allow for arbitrary parameters
+the functions are defined by the following data types:
+
+ -- Data Type: gsl_multifit_function
+     This data type defines a general system of functions with
+     arbitrary parameters.
+
+    `int (* f) (const gsl_vector * X, void * PARAMS, gsl_vector * F)'
+          this function should store the vector result f(x,params) in F
+          for argument X and arbitrary parameters PARAMS, returning an
+          appropriate error code if the function cannot be computed.
+
+    `size_t n'
+          the number of functions, i.e. the number of components of the
+          vector F.
+
+    `size_t p'
+          the number of independent variables, i.e. the number of
+          components of the vector X.
+
+    `void * params'
+          a pointer to the arbitrary parameters of the function.
+
+ -- Data Type: gsl_multifit_function_fdf
+     This data type defines a general system of functions with
+     arbitrary parameters and the corresponding Jacobian matrix of
+     derivatives,
+
+    `int (* f) (const gsl_vector * X, void * PARAMS, gsl_vector * F)'
+          this function should store the vector result f(x,params) in F
+          for argument X and arbitrary parameters PARAMS, returning an
+          appropriate error code if the function cannot be computed.
+
+    `int (* df) (const gsl_vector * X, void * PARAMS, gsl_matrix * J)'
+          this function should store the N-by-P matrix result J_ij = d
+          f_i(x,params) / d x_j in J for argument X and arbitrary
+          parameters PARAMS, returning an appropriate error code if the
+          function cannot be computed.
+
+    `int (* fdf) (const gsl_vector * X, void * PARAMS, gsl_vector * F, gsl_matrix * J)'
+          This function should set the values of the F and J as above,
+          for arguments X and arbitrary parameters PARAMS.  This
+          function provides an optimization of the separate functions
+          for f(x) and J(x)--it is always faster to compute the
+          function and its derivative at the same time.
+
+    `size_t n'
+          the number of functions, i.e. the number of components of the
+          vector F.
+
+    `size_t p'
+          the number of independent variables, i.e. the number of
+          components of the vector X.
+
+    `void * params'
+          a pointer to the arbitrary parameters of the function.
+
+   Note that when fitting a non-linear model against experimental data,
+the data is passed to the functions above using the PARAMS argument and
+the trial best-fit parameters through the X argument.
+
+\1f
+File: gsl-ref.info,  Node: Iteration of the Minimization Algorithm,  Next: Search Stopping Parameters for Minimization Algorithms,  Prev: Providing the Function to be Minimized,  Up: Nonlinear Least-Squares Fitting
+
+38.4 Iteration
+==============
+
+The following functions drive the iteration of each algorithm.  Each
+function performs one iteration to update the state of any solver of the
+corresponding type.  The same functions work for all solvers so that
+different methods can be substituted at runtime without modifications to
+the code.
+
+ -- Function: int gsl_multifit_fsolver_iterate (gsl_multifit_fsolver *
+          S)
+ -- Function: int gsl_multifit_fdfsolver_iterate
+          (gsl_multifit_fdfsolver * S)
+     These functions perform a single iteration of the solver S.  If
+     the iteration encounters an unexpected problem then an error code
+     will be returned.  The solver maintains a current estimate of the
+     best-fit parameters at all times.
+
+   The solver struct S contains the following entries, which can be
+used to track the progress of the solution:
+
+`gsl_vector * x'
+     The current position.
+
+`gsl_vector * f'
+     The function value at the current position.
+
+`gsl_vector * dx'
+     The difference between the current position and the previous
+     position, i.e. the last step, taken as a vector.
+
+`gsl_matrix * J'
+     The Jacobian matrix at the current position (for the
+     `gsl_multifit_fdfsolver' struct only)
+
+   The best-fit information also can be accessed with the following
+auxiliary functions,
+
+ -- Function: gsl_vector * gsl_multifit_fsolver_position (const
+          gsl_multifit_fsolver * S)
+ -- Function: gsl_vector * gsl_multifit_fdfsolver_position (const
+          gsl_multifit_fdfsolver * S)
+     These functions return the current position (i.e. best-fit
+     parameters) `s->x' of the solver S.
+
+\1f
+File: gsl-ref.info,  Node: Search Stopping Parameters for Minimization Algorithms,  Next: Minimization Algorithms using Derivatives,  Prev: Iteration of the Minimization Algorithm,  Up: Nonlinear Least-Squares Fitting
+
+38.5 Search Stopping Parameters
+===============================
+
+A minimization procedure should stop when one of the following
+conditions is true:
+
+   * A minimum has been found to within the user-specified precision.
+
+   * A user-specified maximum number of iterations has been reached.
+
+   * An error has occurred.
+
+The handling of these conditions is under user control.  The functions
+below allow the user to test the current estimate of the best-fit
+parameters in several standard ways.
+
+ -- Function: int gsl_multifit_test_delta (const gsl_vector * DX, const
+          gsl_vector * X, double EPSABS, double EPSREL)
+     This function tests for the convergence of the sequence by
+     comparing the last step DX with the absolute error EPSABS and
+     relative error EPSREL to the current position X.  The test returns
+     `GSL_SUCCESS' if the following condition is achieved,
+
+          |dx_i| < epsabs + epsrel |x_i|
+
+     for each component of X and returns `GSL_CONTINUE' otherwise.
+
+ -- Function: int gsl_multifit_test_gradient (const gsl_vector * G,
+          double EPSABS)
+     This function tests the residual gradient G against the absolute
+     error bound EPSABS.  Mathematically, the gradient should be
+     exactly zero at the minimum. The test returns `GSL_SUCCESS' if the
+     following condition is achieved,
+
+          \sum_i |g_i| < epsabs
+
+     and returns `GSL_CONTINUE' otherwise.  This criterion is suitable
+     for situations where the precise location of the minimum, x, is
+     unimportant provided a value can be found where the gradient is
+     small enough.
+
+ -- Function: int gsl_multifit_gradient (const gsl_matrix * J, const
+          gsl_vector * F, gsl_vector * G)
+     This function computes the gradient G of \Phi(x) = (1/2)
+     ||F(x)||^2 from the Jacobian matrix J and the function values F,
+     using the formula g = J^T f.
+
+\1f
+File: gsl-ref.info,  Node: Minimization Algorithms using Derivatives,  Next: Minimization Algorithms without Derivatives,  Prev: Search Stopping Parameters for Minimization Algorithms,  Up: Nonlinear Least-Squares Fitting
+
+38.6 Minimization Algorithms using Derivatives
+==============================================
+
+The minimization algorithms described in this section make use of both
+the function and its derivative.  They require an initial guess for the
+location of the minimum. There is no absolute guarantee of
+convergence--the function must be suitable for this technique and the
+initial guess must be sufficiently close to the minimum for it to work.
+
+ -- Derivative Solver: gsl_multifit_fdfsolver_lmsder
+     This is a robust and efficient version of the Levenberg-Marquardt
+     algorithm as implemented in the scaled LMDER routine in MINPACK.
+     Minpack was written by Jorge J. More', Burton S. Garbow and
+     Kenneth E. Hillstrom.
+
+     The algorithm uses a generalized trust region to keep each step
+     under control.  In order to be accepted a proposed new position x'
+     must satisfy the condition |D (x' - x)| < \delta, where D is a
+     diagonal scaling matrix and \delta is the size of the trust
+     region.  The components of D are computed internally, using the
+     column norms of the Jacobian to estimate the sensitivity of the
+     residual to each component of x.  This improves the behavior of the
+     algorithm for badly scaled functions.
+
+     On each iteration the algorithm attempts to minimize the linear
+     system |F + J p| subject to the constraint |D p| < \Delta.  The
+     solution to this constrained linear system is found using the
+     Levenberg-Marquardt method.
+
+     The proposed step is now tested by evaluating the function at the
+     resulting point, x'.  If the step reduces the norm of the function
+     sufficiently, and follows the predicted behavior of the function
+     within the trust region, then it is accepted and the size of the
+     trust region is increased.  If the proposed step fails to improve
+     the solution, or differs significantly from the expected behavior
+     within the trust region, then the size of the trust region is
+     decreased and another trial step is computed.
+
+     The algorithm also monitors the progress of the solution and
+     returns an error if the changes in the solution are smaller than
+     the machine precision.  The possible error codes are,
+
+    `GSL_ETOLF'
+          the decrease in the function falls below machine precision
+
+    `GSL_ETOLX'
+          the change in the position vector falls below machine
+          precision
+
+    `GSL_ETOLG'
+          the norm of the gradient, relative to the norm of the
+          function, falls below machine precision
+
+    `GSL_ENOPROG'
+          the routine has made 10 or more attempts to find a suitable
+          trial step without success (but subsequent calls can be made
+          to continue the search).(1)
+
+     These error codes indicate that further iterations will be
+     unlikely to change the solution from its current value.
+
+ -- Derivative Solver: gsl_multifit_fdfsolver_lmder
+     This is an unscaled version of the LMDER algorithm.  The elements
+     of the diagonal scaling matrix D are set to 1.  This algorithm may
+     be useful in circumstances where the scaled version of LMDER
+     converges too slowly, or the function is already scaled
+     appropriately.
+
+   ---------- Footnotes ----------
+
+   (1) The return code `GSL_CONTINUE' was used for this case in
+versions prior to 1.14.
+
+\1f
+File: gsl-ref.info,  Node: Minimization Algorithms without Derivatives,  Next: Computing the covariance matrix of best fit parameters,  Prev: Minimization Algorithms using Derivatives,  Up: Nonlinear Least-Squares Fitting
+
+38.7 Minimization Algorithms without Derivatives
+================================================
+
+There are no algorithms implemented in this section at the moment.
+
+\1f
+File: gsl-ref.info,  Node: Computing the covariance matrix of best fit parameters,  Next: Example programs for Nonlinear Least-Squares Fitting,  Prev: Minimization Algorithms without Derivatives,  Up: Nonlinear Least-Squares Fitting
+
+38.8 Computing the covariance matrix of best fit parameters
+===========================================================
+
+ -- Function: int gsl_multifit_covar (const gsl_matrix * J, double
+          EPSREL, gsl_matrix * COVAR)
+     This function uses the Jacobian matrix J to compute the covariance
+     matrix of the best-fit parameters, COVAR.  The parameter EPSREL is
+     used to remove linear-dependent columns when J is rank deficient.
+
+     The covariance matrix is given by,
+
+          covar = (J^T J)^{-1}
+
+     and is computed by QR decomposition of J with column-pivoting.  Any
+     columns of R which satisfy
+
+          |R_{kk}| <= epsrel |R_{11}|
+
+     are considered linearly-dependent and are excluded from the
+     covariance matrix (the corresponding rows and columns of the
+     covariance matrix are set to zero).
+
+     If the minimisation uses the weighted least-squares function f_i =
+     (Y(x, t_i) - y_i) / \sigma_i then the covariance matrix above
+     gives the statistical error on the best-fit parameters resulting
+     from the Gaussian errors \sigma_i on the underlying data y_i.
+     This can be verified from the relation \delta f = J \delta c and
+     the fact that the fluctuations in f from the data y_i are
+     normalised by \sigma_i and so satisfy <\delta f \delta f^T> = I.
+
+     For an unweighted least-squares function f_i = (Y(x, t_i) - y_i)
+     the covariance matrix above should be multiplied by the variance
+     of the residuals about the best-fit \sigma^2 = \sum (y_i -
+     Y(x,t_i))^2 / (n-p) to give the variance-covariance matrix
+     \sigma^2 C.  This estimates the statistical error on the best-fit
+     parameters from the scatter of the underlying data.
+
+     For more information about covariance matrices see *note Fitting
+     Overview::.
+
+\1f
+File: gsl-ref.info,  Node: Example programs for Nonlinear Least-Squares Fitting,  Next: References and Further Reading for Nonlinear Least-Squares Fitting,  Prev: Computing the covariance matrix of best fit parameters,  Up: Nonlinear Least-Squares Fitting
+
+38.9 Examples
+=============
+
+The following example program fits a weighted exponential model with
+background to experimental data, Y = A \exp(-\lambda t) + b. The first
+part of the program sets up the functions `expb_f' and `expb_df' to
+calculate the model and its Jacobian.  The appropriate fitting function
+is given by,
+
+     f_i = ((A \exp(-\lambda t_i) + b) - y_i)/\sigma_i
+
+where we have chosen t_i = i.  The Jacobian matrix J is the derivative
+of these functions with respect to the three parameters (A, \lambda,
+b).  It is given by,
+
+     J_{ij} = d f_i / d x_j
+
+where x_0 = A, x_1 = \lambda and x_2 = b.
+
+     /* expfit.c -- model functions for exponential + background */
+
+     struct data {
+       size_t n;
+       double * y;
+       double * sigma;
+     };
+
+     int
+     expb_f (const gsl_vector * x, void *data,
+             gsl_vector * f)
+     {
+       size_t n = ((struct data *)data)->n;
+       double *y = ((struct data *)data)->y;
+       double *sigma = ((struct data *) data)->sigma;
+
+       double A = gsl_vector_get (x, 0);
+       double lambda = gsl_vector_get (x, 1);
+       double b = gsl_vector_get (x, 2);
+
+       size_t i;
+
+       for (i = 0; i < n; i++)
+         {
+           /* Model Yi = A * exp(-lambda * i) + b */
+           double t = i;
+           double Yi = A * exp (-lambda * t) + b;
+           gsl_vector_set (f, i, (Yi - y[i])/sigma[i]);
+         }
+
+       return GSL_SUCCESS;
+     }
+
+     int
+     expb_df (const gsl_vector * x, void *data,
+              gsl_matrix * J)
+     {
+       size_t n = ((struct data *)data)->n;
+       double *sigma = ((struct data *) data)->sigma;
+
+       double A = gsl_vector_get (x, 0);
+       double lambda = gsl_vector_get (x, 1);
+
+       size_t i;
+
+       for (i = 0; i < n; i++)
+         {
+           /* Jacobian matrix J(i,j) = dfi / dxj, */
+           /* where fi = (Yi - yi)/sigma[i],      */
+           /*       Yi = A * exp(-lambda * i) + b  */
+           /* and the xj are the parameters (A,lambda,b) */
+           double t = i;
+           double s = sigma[i];
+           double e = exp(-lambda * t);
+           gsl_matrix_set (J, i, 0, e/s);
+           gsl_matrix_set (J, i, 1, -t * A * e/s);
+           gsl_matrix_set (J, i, 2, 1/s);
+         }
+       return GSL_SUCCESS;
+     }
+
+     int
+     expb_fdf (const gsl_vector * x, void *data,
+               gsl_vector * f, gsl_matrix * J)
+     {
+       expb_f (x, data, f);
+       expb_df (x, data, J);
+
+       return GSL_SUCCESS;
+     }
+
+The main part of the program sets up a Levenberg-Marquardt solver and
+some simulated random data. The data uses the known parameters
+(1.0,5.0,0.1) combined with Gaussian noise (standard deviation = 0.1)
+over a range of 40 timesteps. The initial guess for the parameters is
+chosen as (0.0, 1.0, 0.0).
+
+     #include <stdlib.h>
+     #include <stdio.h>
+     #include <gsl/gsl_rng.h>
+     #include <gsl/gsl_randist.h>
+     #include <gsl/gsl_vector.h>
+     #include <gsl/gsl_blas.h>
+     #include <gsl/gsl_multifit_nlin.h>
+
+     #include "expfit.c"
+
+     #define N 40
+
+     void print_state (size_t iter, gsl_multifit_fdfsolver * s);
+
+     int
+     main (void)
+     {
+       const gsl_multifit_fdfsolver_type *T;
+       gsl_multifit_fdfsolver *s;
+       int status;
+       unsigned int i, iter = 0;
+       const size_t n = N;
+       const size_t p = 3;
+
+       gsl_matrix *covar = gsl_matrix_alloc (p, p);
+       double y[N], sigma[N];
+       struct data d = { n, y, sigma};
+       gsl_multifit_function_fdf f;
+       double x_init[3] = { 1.0, 0.0, 0.0 };
+       gsl_vector_view x = gsl_vector_view_array (x_init, p);
+       const gsl_rng_type * type;
+       gsl_rng * r;
+
+       gsl_rng_env_setup();
+
+       type = gsl_rng_default;
+       r = gsl_rng_alloc (type);
+
+       f.f = &expb_f;
+       f.df = &expb_df;
+       f.fdf = &expb_fdf;
+       f.n = n;
+       f.p = p;
+       f.params = &d;
+
+       /* This is the data to be fitted */
+
+       for (i = 0; i < n; i++)
+         {
+           double t = i;
+           y[i] = 1.0 + 5 * exp (-0.1 * t)
+                      + gsl_ran_gaussian (r, 0.1);
+           sigma[i] = 0.1;
+           printf ("data: %u %g %g\n", i, y[i], sigma[i]);
+         };
+
+       T = gsl_multifit_fdfsolver_lmsder;
+       s = gsl_multifit_fdfsolver_alloc (T, n, p);
+       gsl_multifit_fdfsolver_set (s, &f, &x.vector);
+
+       print_state (iter, s);
+
+       do
+         {
+           iter++;
+           status = gsl_multifit_fdfsolver_iterate (s);
+
+           printf ("status = %s\n", gsl_strerror (status));
+
+           print_state (iter, s);
+
+           if (status)
+             break;
+
+           status = gsl_multifit_test_delta (s->dx, s->x,
+                                             1e-4, 1e-4);
+         }
+       while (status == GSL_CONTINUE && iter < 500);
+
+       gsl_multifit_covar (s->J, 0.0, covar);
+
+     #define FIT(i) gsl_vector_get(s->x, i)
+     #define ERR(i) sqrt(gsl_matrix_get(covar,i,i))
+
+       {
+         double chi = gsl_blas_dnrm2(s->f);
+         double dof = n - p;
+         double c = GSL_MAX_DBL(1, chi / sqrt(dof));
+
+         printf("chisq/dof = %g\n",  pow(chi, 2.0) / dof);
+
+         printf ("A      = %.5f +/- %.5f\n", FIT(0), c*ERR(0));
+         printf ("lambda = %.5f +/- %.5f\n", FIT(1), c*ERR(1));
+         printf ("b      = %.5f +/- %.5f\n", FIT(2), c*ERR(2));
+       }
+
+       printf ("status = %s\n", gsl_strerror (status));
+
+       gsl_multifit_fdfsolver_free (s);
+       gsl_matrix_free (covar);
+       gsl_rng_free (r);
+       return 0;
+     }
+
+     void
+     print_state (size_t iter, gsl_multifit_fdfsolver * s)
+     {
+       printf ("iter: %3u x = % 15.8f % 15.8f % 15.8f "
+               "|f(x)| = %g\n",
+               iter,
+               gsl_vector_get (s->x, 0),
+               gsl_vector_get (s->x, 1),
+               gsl_vector_get (s->x, 2),
+               gsl_blas_dnrm2 (s->f));
+     }
+
+The iteration terminates when the change in x is smaller than 0.0001, as
+both an absolute and relative change.  Here are the results of running
+the program:
+
+     iter: 0 x=1.00000000 0.00000000 0.00000000 |f(x)|=117.349
+     status=success
+     iter: 1 x=1.64659312 0.01814772 0.64659312 |f(x)|=76.4578
+     status=success
+     iter: 2 x=2.85876037 0.08092095 1.44796363 |f(x)|=37.6838
+     status=success
+     iter: 3 x=4.94899512 0.11942928 1.09457665 |f(x)|=9.58079
+     status=success
+     iter: 4 x=5.02175572 0.10287787 1.03388354 |f(x)|=5.63049
+     status=success
+     iter: 5 x=5.04520433 0.10405523 1.01941607 |f(x)|=5.44398
+     status=success
+     iter: 6 x=5.04535782 0.10404906 1.01924871 |f(x)|=5.44397
+     chisq/dof = 0.800996
+     A      = 5.04536 +/- 0.06028
+     lambda = 0.10405 +/- 0.00316
+     b      = 1.01925 +/- 0.03782
+     status = success
+
+The approximate values of the parameters are found correctly, and the
+chi-squared value indicates a good fit (the chi-squared per degree of
+freedom is approximately 1).  In this case the errors on the parameters
+can be estimated from the square roots of the diagonal elements of the
+covariance matrix.
+
+   If the chi-squared value shows a poor fit (i.e. chi^2/dof >> 1) then
+the error estimates obtained from the covariance matrix will be too
+small.  In the example program the error estimates are multiplied by
+\sqrt{\chi^2/dof} in this case, a common way of increasing the errors
+for a poor fit.  Note that a poor fit will result from the use an
+inappropriate model, and the scaled error estimates may then be outside
+the range of validity for Gaussian errors.
+
+\1f
+File: gsl-ref.info,  Node: References and Further Reading for Nonlinear Least-Squares Fitting,  Prev: Example programs for Nonlinear Least-Squares Fitting,  Up: Nonlinear Least-Squares Fitting
+
+38.10 References and Further Reading
+====================================
+
+The MINPACK algorithm is described in the following article,
+
+     J.J. More', `The Levenberg-Marquardt Algorithm: Implementation and
+     Theory', Lecture Notes in Mathematics, v630 (1978), ed G. Watson.
+
+The following paper is also relevant to the algorithms described in this
+section,
+
+     J.J. More', B.S. Garbow, K.E. Hillstrom, "Testing Unconstrained
+     Optimization Software", ACM Transactions on Mathematical Software,
+     Vol 7, No 1 (1981), p 17-41.
+
+\1f
+File: gsl-ref.info,  Node: Basis Splines,  Next: Physical Constants,  Prev: Nonlinear Least-Squares Fitting,  Up: Top
+
+39 Basis Splines
+****************
+
+This chapter describes functions for the computation of smoothing basis
+splines (B-splines). A smoothing spline differs from an interpolating
+spline in that the resulting curve is not required to pass through each
+datapoint.  *Note Interpolation::, for information about interpolating
+splines.
+
+   The header file `gsl_bspline.h' contains the prototypes for the
+bspline functions and related declarations.
+
+* Menu:
+
+* Overview of B-splines::
+* Initializing the B-splines solver::
+* Constructing the knots vector::
+* Evaluation of B-spline basis functions::
+* Evaluation of B-spline basis function derivatives::
+* Obtaining Greville abscissae for B-spline basis functions::
+* Example programs for B-splines::
+* References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Overview of B-splines,  Next: Initializing the B-splines solver,  Up: Basis Splines
+
+39.1 Overview
+=============
+
+B-splines are commonly used as basis functions to fit smoothing curves
+to large data sets. To do this, the abscissa axis is broken up into
+some number of intervals, where the endpoints of each interval are
+called "breakpoints". These breakpoints are then converted to "knots"
+by imposing various continuity and smoothness conditions at each
+interface. Given a nondecreasing knot vector t = {t_0, t_1, ...,
+t_{n+k-1}}, the n basis splines of order k are defined by
+
+     B_(i,1)(x) = (1, t_i <= x < t_(i+1)
+                  (0, else
+     B_(i,k)(x) = [(x - t_i)/(t_(i+k-1) - t_i)] B_(i,k-1)(x)
+                   + [(t_(i+k) - x)/(t_(i+k) - t_(i+1))] B_(i+1,k-1)(x)
+
+for i = 0, ..., n-1. The common case of cubic B-splines is given by k =
+4. The above recurrence relation can be evaluated in a numerically
+stable way by the de Boor algorithm.
+
+   If we define appropriate knots on an interval [a,b] then the
+B-spline basis functions form a complete set on that interval.
+Therefore we can expand a smoothing function as
+
+     f(x) = \sum_i c_i B_(i,k)(x)
+
+given enough (x_j, f(x_j)) data pairs. The coefficients c_i can be
+readily obtained from a least-squares fit.
+
+\1f
+File: gsl-ref.info,  Node: Initializing the B-splines solver,  Next: Constructing the knots vector,  Prev: Overview of B-splines,  Up: Basis Splines
+
+39.2 Initializing the B-splines solver
+======================================
+
+The computation of B-spline functions requires a preallocated workspace
+of type `gsl_bspline_workspace'. If B-spline derivatives are also
+required, an additional `gsl_bspline_deriv_workspace' is needed.
+
+ -- Function: gsl_bspline_workspace * gsl_bspline_alloc (const size_t
+          K, const size_t NBREAK)
+     This function allocates a workspace for computing B-splines of
+     order K. The number of breakpoints is given by NBREAK. This leads
+     to n = nbreak + k - 2 basis functions. Cubic B-splines are
+     specified by k = 4. The size of the workspace is O(5k + nbreak).
+
+ -- Function: void gsl_bspline_free (gsl_bspline_workspace * W)
+     This function frees the memory associated with the workspace W.
+
+ -- Function: gsl_bspline_deriv_workspace * gsl_bspline_deriv_alloc
+          (const size_t K)
+     This function allocates a workspace for computing the derivatives
+     of a B-spline basis function of order K.  The size of the workspace
+     is O(2k^2).
+
+ -- Function: void gsl_bspline_deriv_free (gsl_bspline_deriv_workspace
+          * W)
+     This function frees the memory associated with the derivative
+     workspace W.
+
+\1f
+File: gsl-ref.info,  Node: Constructing the knots vector,  Next: Evaluation of B-spline basis functions,  Prev: Initializing the B-splines solver,  Up: Basis Splines
+
+39.3 Constructing the knots vector
+==================================
+
+ -- Function: int gsl_bspline_knots (const gsl_vector * BREAKPTS,
+          gsl_bspline_workspace * W)
+     This function computes the knots associated with the given
+     breakpoints and stores them internally in `w->knots'.
+
+ -- Function: int gsl_bspline_knots_uniform (const double A, const
+          double B, gsl_bspline_workspace * W)
+     This function assumes uniformly spaced breakpoints on [a,b] and
+     constructs the corresponding knot vector using the previously
+     specified NBREAK parameter. The knots are stored in `w->knots'.
+
+\1f
+File: gsl-ref.info,  Node: Evaluation of B-spline basis functions,  Next: Evaluation of B-spline basis function derivatives,  Prev: Constructing the knots vector,  Up: Basis Splines
+
+39.4 Evaluation of B-splines
+============================
+
+ -- Function: int gsl_bspline_eval (const double X, gsl_vector * B,
+          gsl_bspline_workspace * W)
+     This function evaluates all B-spline basis functions at the
+     position X and stores them in the vector B, so that the i-th
+     element is B_i(x). The vector B must be of length n = nbreak + k -
+     2.  This value may also be obtained by calling
+     `gsl_bspline_ncoeffs'.  Computing all the basis functions at once
+     is more efficient than computing them individually, due to the
+     nature of the defining recurrence relation.
+
+ -- Function: int gsl_bspline_eval_nonzero (const double X, gsl_vector
+          * BK, size_t * ISTART, size_t * IEND, gsl_bspline_workspace *
+          W)
+     This function evaluates all potentially nonzero B-spline basis
+     functions at the position X and stores them in the vector BK, so
+     that the i-th element is B_(istart+i)(x).  The last element of BK
+     is B_(iend)(x).  The vector BK must be of length k.  By returning
+     only the nonzero basis functions, this function allows quantities
+     involving linear combinations of the B_i(x) to be computed without
+     unnecessary terms (such linear combinations occur, for example,
+     when evaluating an interpolated function).
+
+ -- Function: size_t gsl_bspline_ncoeffs (gsl_bspline_workspace * W)
+     This function returns the number of B-spline coefficients given by
+     n = nbreak + k - 2.
+
+\1f
+File: gsl-ref.info,  Node: Evaluation of B-spline basis function derivatives,  Next: Obtaining Greville abscissae for B-spline basis functions,  Prev: Evaluation of B-spline basis functions,  Up: Basis Splines
+
+39.5 Evaluation of B-spline derivatives
+=======================================
+
+ -- Function: int gsl_bspline_deriv_eval (const double X, const size_t
+          NDERIV, gsl_matrix * DB, gsl_bspline_workspace * W,
+          gsl_bspline_deriv_workspace * DW)
+     This function evaluates all B-spline basis function derivatives of
+     orders 0 through nderiv (inclusive) at the position X and stores
+     them in the matrix DB.  The (i,j)-th element of DB is
+     d^jB_i(x)/dx^j.  The matrix DB must be of size n = nbreak + k - 2
+     by nderiv + 1.  The value n may also be obtained by calling
+     `gsl_bspline_ncoeffs'.  Note that function evaluations are
+     included as the zeroth order derivatives in DB.  Computing all the
+     basis function derivatives at once is more efficient than
+     computing them individually, due to the nature of the defining
+     recurrence relation.
+
+ -- Function: int gsl_bspline_deriv_eval_nonzero (const double X, const
+          size_t NDERIV, gsl_matrix * DB, size_t * ISTART, size_t *
+          IEND, gsl_bspline_workspace * W, gsl_bspline_deriv_workspace
+          * DW)
+     This function evaluates all potentially nonzero B-spline basis
+     function derivatives of orders 0 through nderiv (inclusive) at the
+     position X and stores them in the matrix DB.  The (i,j)-th element
+     of DB is d^j/dx^j B_(istart+i)(x).  The last row of DB contains
+     d^j/dx^j B_(iend)(x).  The matrix DB must be of size k by at least
+     nderiv + 1.  Note that function evaluations are included as the
+     zeroth order derivatives in DB.  By returning only the nonzero
+     basis functions, this function allows quantities involving linear
+     combinations of the B_i(x) and their derivatives to be computed
+     without unnecessary terms.
+
+\1f
+File: gsl-ref.info,  Node: Obtaining Greville abscissae for B-spline basis functions,  Next: Example programs for B-splines,  Prev: Evaluation of B-spline basis function derivatives,  Up: Basis Splines
+
+39.6 Greville abscissae
+=======================
+
+The Greville abscissae are defined to be the mean location of k-1
+consecutive knots in the knot vector for each basis spline function of
+order k.  Note that the first and last knots in the knot vector are
+excluded when applying this definition; consequently there are
+`gsl_bspline_ncoeffs' Greville abscissa.  They are often used in
+B-spline collocation applications and may also be called
+Marsden-Schoenberg points.
+
+   The above definition is undefined for k=1.  The implementation
+chooses to return interval midpoints in the degenerate k=1 case.
+
+ -- Function: double gsl_bspline_greville_abscissa (size_t I,
+          gsl_bspline_workspace *W);
+     Returns the location of the i-th Greville abscissa for the given
+     spline basis.  Here, i = 0, ..., `gsl_bspline_ncoeffs(w) - 1'.
+
+\1f
+File: gsl-ref.info,  Node: Example programs for B-splines,  Next: References and Further Reading,  Prev: Obtaining Greville abscissae for B-spline basis functions,  Up: Basis Splines
+
+39.7 Examples
+=============
+
+The following program computes a linear least squares fit to data using
+cubic B-spline basis functions with uniform breakpoints. The data is
+generated from the curve y(x) = \cos(x) \exp(-x/10) on the interval [0,
+15] with Gaussian noise added.
+
+     #include <stdio.h>
+     #include <stdlib.h>
+     #include <math.h>
+     #include <gsl/gsl_bspline.h>
+     #include <gsl/gsl_multifit.h>
+     #include <gsl/gsl_rng.h>
+     #include <gsl/gsl_randist.h>
+     #include <gsl/gsl_statistics.h>
+
+     /* number of data points to fit */
+     #define N        200
+
+     /* number of fit coefficients */
+     #define NCOEFFS  12
+
+     /* nbreak = ncoeffs + 2 - k = ncoeffs - 2 since k = 4 */
+     #define NBREAK   (NCOEFFS - 2)
+
+     int
+     main (void)
+     {
+       const size_t n = N;
+       const size_t ncoeffs = NCOEFFS;
+       const size_t nbreak = NBREAK;
+       size_t i, j;
+       gsl_bspline_workspace *bw;
+       gsl_vector *B;
+       double dy;
+       gsl_rng *r;
+       gsl_vector *c, *w;
+       gsl_vector *x, *y;
+       gsl_matrix *X, *cov;
+       gsl_multifit_linear_workspace *mw;
+       double chisq, Rsq, dof, tss;
+
+       gsl_rng_env_setup();
+       r = gsl_rng_alloc(gsl_rng_default);
+
+       /* allocate a cubic bspline workspace (k = 4) */
+       bw = gsl_bspline_alloc(4, nbreak);
+       B = gsl_vector_alloc(ncoeffs);
+
+       x = gsl_vector_alloc(n);
+       y = gsl_vector_alloc(n);
+       X = gsl_matrix_alloc(n, ncoeffs);
+       c = gsl_vector_alloc(ncoeffs);
+       w = gsl_vector_alloc(n);
+       cov = gsl_matrix_alloc(ncoeffs, ncoeffs);
+       mw = gsl_multifit_linear_alloc(n, ncoeffs);
+
+       printf("#m=0,S=0\n");
+       /* this is the data to be fitted */
+       for (i = 0; i < n; ++i)
+         {
+           double sigma;
+           double xi = (15.0 / (N - 1)) * i;
+           double yi = cos(xi) * exp(-0.1 * xi);
+
+           sigma = 0.1 * yi;
+           dy = gsl_ran_gaussian(r, sigma);
+           yi += dy;
+
+           gsl_vector_set(x, i, xi);
+           gsl_vector_set(y, i, yi);
+           gsl_vector_set(w, i, 1.0 / (sigma * sigma));
+
+           printf("%f %f\n", xi, yi);
+         }
+
+       /* use uniform breakpoints on [0, 15] */
+       gsl_bspline_knots_uniform(0.0, 15.0, bw);
+
+       /* construct the fit matrix X */
+       for (i = 0; i < n; ++i)
+         {
+           double xi = gsl_vector_get(x, i);
+
+           /* compute B_j(xi) for all j */
+           gsl_bspline_eval(xi, B, bw);
+
+           /* fill in row i of X */
+           for (j = 0; j < ncoeffs; ++j)
+             {
+               double Bj = gsl_vector_get(B, j);
+               gsl_matrix_set(X, i, j, Bj);
+             }
+         }
+
+       /* do the fit */
+       gsl_multifit_wlinear(X, w, y, c, cov, &chisq, mw);
+
+       dof = n - ncoeffs;
+       tss = gsl_stats_wtss(w->data, 1, y->data, 1, y->size);
+       Rsq = 1.0 - chisq / tss;
+
+       fprintf(stderr, "chisq/dof = %e, Rsq = %f\n",
+                        chisq / dof, Rsq);
+
+       /* output the smoothed curve */
+       {
+         double xi, yi, yerr;
+
+         printf("#m=1,S=0\n");
+         for (xi = 0.0; xi < 15.0; xi += 0.1)
+           {
+             gsl_bspline_eval(xi, B, bw);
+             gsl_multifit_linear_est(B, c, cov, &yi, &yerr);
+             printf("%f %f\n", xi, yi);
+           }
+       }
+
+       gsl_rng_free(r);
+       gsl_bspline_free(bw);
+       gsl_vector_free(B);
+       gsl_vector_free(x);
+       gsl_vector_free(y);
+       gsl_matrix_free(X);
+       gsl_vector_free(c);
+       gsl_vector_free(w);
+       gsl_matrix_free(cov);
+       gsl_multifit_linear_free(mw);
+
+       return 0;
+     } /* main() */
+
+   The output can be plotted with GNU `graph'.
+
+     $ ./a.out > bspline.dat
+     chisq/dof = 1.118217e+00, Rsq = 0.989771
+     $ graph -T ps -X x -Y y -x 0 15 -y -1 1.3 < bspline.dat > bspline.ps
+
+\1f
+File: gsl-ref.info,  Node: References and Further Reading,  Prev: Example programs for B-splines,  Up: Basis Splines
+
+39.8 References and Further Reading
+===================================
+
+Further information on the algorithms described in this section can be
+found in the following book,
+
+     C. de Boor, `A Practical Guide to Splines' (1978), Springer-Verlag,
+     ISBN 0-387-90356-9.
+
+   Further information of Greville abscissae and B-spline collocation
+can be found in the following paper,
+
+     Richard W. Johnson, Higher order B-spline collocation at the
+     Greville abscissae.  `Applied Numerical Mathematics'. vol. 52,
+     2005, 63-75.
+
+A large collection of B-spline routines is available in the PPPACK
+library available at `http://www.netlib.org/pppack', which is also part
+of SLATEC.
+
+\1f
+File: gsl-ref.info,  Node: Physical Constants,  Next: IEEE floating-point arithmetic,  Prev: Basis Splines,  Up: Top
+
+40 Physical Constants
+*********************
+
+This chapter describes macros for the values of physical constants, such
+as the speed of light, c, and gravitational constant, G.  The values
+are available in different unit systems, including the standard MKSA
+system (meters, kilograms, seconds, amperes) and the CGSM system
+(centimeters, grams, seconds, gauss), which is commonly used in
+Astronomy.
+
+   The definitions of constants in the MKSA system are available in the
+file `gsl_const_mksa.h'.  The constants in the CGSM system are defined
+in `gsl_const_cgsm.h'.  Dimensionless constants, such as the fine
+structure constant, which are pure numbers are defined in
+`gsl_const_num.h'.
+
+* Menu:
+
+* Fundamental Constants::
+* Astronomy and Astrophysics::
+* Atomic and Nuclear Physics::
+* Measurement of Time::
+* Imperial Units ::
+* Speed and Nautical Units::
+* Printers Units::
+* Volume Area and Length::
+* Mass and Weight ::
+* Thermal Energy and Power::
+* Pressure::
+* Viscosity::
+* Light and Illumination::
+* Radioactivity::
+* Force and Energy::
+* Prefixes::
+* Physical Constant Examples::
+* Physical Constant References and Further Reading::
+
+   The full list of constants is described briefly below.  Consult the
+header files themselves for the values of the constants used in the
+library.
+
+\1f
+File: gsl-ref.info,  Node: Fundamental Constants,  Next: Astronomy and Astrophysics,  Up: Physical Constants
+
+40.1 Fundamental Constants
+==========================
+
+`GSL_CONST_MKSA_SPEED_OF_LIGHT'
+     The speed of light in vacuum, c.
+
+`GSL_CONST_MKSA_VACUUM_PERMEABILITY'
+     The permeability of free space, \mu_0. This constant is defined in
+     the MKSA system only.
+
+`GSL_CONST_MKSA_VACUUM_PERMITTIVITY'
+     The permittivity of free space, \epsilon_0.  This constant is
+     defined in the MKSA system only.
+
+`GSL_CONST_MKSA_PLANCKS_CONSTANT_H'
+     Planck's constant, h.
+
+`GSL_CONST_MKSA_PLANCKS_CONSTANT_HBAR'
+     Planck's constant divided by 2\pi, \hbar.
+
+`GSL_CONST_NUM_AVOGADRO'
+     Avogadro's number, N_a.
+
+`GSL_CONST_MKSA_FARADAY'
+     The molar charge of 1 Faraday.
+
+`GSL_CONST_MKSA_BOLTZMANN'
+     The Boltzmann constant, k.
+
+`GSL_CONST_MKSA_MOLAR_GAS'
+     The molar gas constant, R_0.
+
+`GSL_CONST_MKSA_STANDARD_GAS_VOLUME'
+     The standard gas volume, V_0.
+
+`GSL_CONST_MKSA_STEFAN_BOLTZMANN_CONSTANT'
+     The Stefan-Boltzmann radiation constant, \sigma.
+
+`GSL_CONST_MKSA_GAUSS'
+     The magnetic field of 1 Gauss.
+
+\1f
+File: gsl-ref.info,  Node: Astronomy and Astrophysics,  Next: Atomic and Nuclear Physics,  Prev: Fundamental Constants,  Up: Physical Constants
+
+40.2 Astronomy and Astrophysics
+===============================
+
+`GSL_CONST_MKSA_ASTRONOMICAL_UNIT'
+     The length of 1 astronomical unit (mean earth-sun distance), au.
+
+`GSL_CONST_MKSA_GRAVITATIONAL_CONSTANT'
+     The gravitational constant, G.
+
+`GSL_CONST_MKSA_LIGHT_YEAR'
+     The distance of 1 light-year, ly.
+
+`GSL_CONST_MKSA_PARSEC'
+     The distance of 1 parsec, pc.
+
+`GSL_CONST_MKSA_GRAV_ACCEL'
+     The standard gravitational acceleration on Earth, g.
+
+`GSL_CONST_MKSA_SOLAR_MASS'
+     The mass of the Sun.
+
+\1f
+File: gsl-ref.info,  Node: Atomic and Nuclear Physics,  Next: Measurement of Time,  Prev: Astronomy and Astrophysics,  Up: Physical Constants
+
+40.3 Atomic and Nuclear Physics
+===============================
+
+`GSL_CONST_MKSA_ELECTRON_CHARGE'
+     The charge of the electron, e.
+
+`GSL_CONST_MKSA_ELECTRON_VOLT'
+     The energy of 1 electron volt, eV.
+
+`GSL_CONST_MKSA_UNIFIED_ATOMIC_MASS'
+     The unified atomic mass, amu.
+
+`GSL_CONST_MKSA_MASS_ELECTRON'
+     The mass of the electron, m_e.
+
+`GSL_CONST_MKSA_MASS_MUON'
+     The mass of the muon, m_\mu.
+
+`GSL_CONST_MKSA_MASS_PROTON'
+     The mass of the proton, m_p.
+
+`GSL_CONST_MKSA_MASS_NEUTRON'
+     The mass of the neutron, m_n.
+
+`GSL_CONST_NUM_FINE_STRUCTURE'
+     The electromagnetic fine structure constant \alpha.
+
+`GSL_CONST_MKSA_RYDBERG'
+     The Rydberg constant, Ry, in units of energy.  This is related to
+     the Rydberg inverse wavelength R_\infty by Ry = h c R_\infty.
+
+`GSL_CONST_MKSA_BOHR_RADIUS'
+     The Bohr radius, a_0.
+
+`GSL_CONST_MKSA_ANGSTROM'
+     The length of 1 angstrom.
+
+`GSL_CONST_MKSA_BARN'
+     The area of 1 barn.
+
+`GSL_CONST_MKSA_BOHR_MAGNETON'
+     The Bohr Magneton, \mu_B.
+
+`GSL_CONST_MKSA_NUCLEAR_MAGNETON'
+     The Nuclear Magneton, \mu_N.
+
+`GSL_CONST_MKSA_ELECTRON_MAGNETIC_MOMENT'
+     The absolute value of the magnetic moment of the electron, \mu_e.
+     The physical magnetic moment of the electron is negative.
+
+`GSL_CONST_MKSA_PROTON_MAGNETIC_MOMENT'
+     The magnetic moment of the proton, \mu_p.
+
+`GSL_CONST_MKSA_THOMSON_CROSS_SECTION'
+     The Thomson cross section, \sigma_T.
+
+`GSL_CONST_MKSA_DEBYE'
+     The electric dipole moment of 1 Debye, D.
+
+\1f
+File: gsl-ref.info,  Node: Measurement of Time,  Next: Imperial Units,  Prev: Atomic and Nuclear Physics,  Up: Physical Constants
+
+40.4 Measurement of Time
+========================
+
+`GSL_CONST_MKSA_MINUTE'
+     The number of seconds in 1 minute.
+
+`GSL_CONST_MKSA_HOUR'
+     The number of seconds in 1 hour.
+
+`GSL_CONST_MKSA_DAY'
+     The number of seconds in 1 day.
+
+`GSL_CONST_MKSA_WEEK'
+     The number of seconds in 1 week.
+
+\1f
+File: gsl-ref.info,  Node: Imperial Units,  Next: Speed and Nautical Units,  Prev: Measurement of Time,  Up: Physical Constants
+
+40.5 Imperial Units
+===================
+
+`GSL_CONST_MKSA_INCH'
+     The length of 1 inch.
+
+`GSL_CONST_MKSA_FOOT'
+     The length of 1 foot.
+
+`GSL_CONST_MKSA_YARD'
+     The length of 1 yard.
+
+`GSL_CONST_MKSA_MILE'
+     The length of 1 mile.
+
+`GSL_CONST_MKSA_MIL'
+     The length of 1 mil (1/1000th of an inch).
+
+\1f
+File: gsl-ref.info,  Node: Speed and Nautical Units,  Next: Printers Units,  Prev: Imperial Units,  Up: Physical Constants
+
+40.6 Speed and Nautical Units
+=============================
+
+`GSL_CONST_MKSA_KILOMETERS_PER_HOUR'
+     The speed of 1 kilometer per hour.
+
+`GSL_CONST_MKSA_MILES_PER_HOUR'
+     The speed of 1 mile per hour.
+
+`GSL_CONST_MKSA_NAUTICAL_MILE'
+     The length of 1 nautical mile.
+
+`GSL_CONST_MKSA_FATHOM'
+     The length of 1 fathom.
+
+`GSL_CONST_MKSA_KNOT'
+     The speed of 1 knot.
+
+\1f
+File: gsl-ref.info,  Node: Printers Units,  Next: Volume Area and Length,  Prev: Speed and Nautical Units,  Up: Physical Constants
+
+40.7 Printers Units
+===================
+
+`GSL_CONST_MKSA_POINT'
+     The length of 1 printer's point (1/72 inch).
+
+`GSL_CONST_MKSA_TEXPOINT'
+     The length of 1 TeX point (1/72.27 inch).
+
+\1f
+File: gsl-ref.info,  Node: Volume Area and Length,  Next: Mass and Weight,  Prev: Printers Units,  Up: Physical Constants
+
+40.8 Volume, Area and Length
+============================
+
+`GSL_CONST_MKSA_MICRON'
+     The length of 1 micron.
+
+`GSL_CONST_MKSA_HECTARE'
+     The area of 1 hectare.
+
+`GSL_CONST_MKSA_ACRE'
+     The area of 1 acre.
+
+`GSL_CONST_MKSA_LITER'
+     The volume of 1 liter.
+
+`GSL_CONST_MKSA_US_GALLON'
+     The volume of 1 US gallon.
+
+`GSL_CONST_MKSA_CANADIAN_GALLON'
+     The volume of 1 Canadian gallon.
+
+`GSL_CONST_MKSA_UK_GALLON'
+     The volume of 1 UK gallon.
+
+`GSL_CONST_MKSA_QUART'
+     The volume of 1 quart.
+
+`GSL_CONST_MKSA_PINT'
+     The volume of 1 pint.
+
+\1f
+File: gsl-ref.info,  Node: Mass and Weight,  Next: Thermal Energy and Power,  Prev: Volume Area and Length,  Up: Physical Constants
+
+40.9 Mass and Weight
+====================
+
+`GSL_CONST_MKSA_POUND_MASS'
+     The mass of 1 pound.
+
+`GSL_CONST_MKSA_OUNCE_MASS'
+     The mass of 1 ounce.
+
+`GSL_CONST_MKSA_TON'
+     The mass of 1 ton.
+
+`GSL_CONST_MKSA_METRIC_TON'
+     The mass of 1 metric ton (1000 kg).
+
+`GSL_CONST_MKSA_UK_TON'
+     The mass of 1 UK ton.
+
+`GSL_CONST_MKSA_TROY_OUNCE'
+     The mass of 1 troy ounce.
+
+`GSL_CONST_MKSA_CARAT'
+     The mass of 1 carat.
+
+`GSL_CONST_MKSA_GRAM_FORCE'
+     The force of 1 gram weight.
+
+`GSL_CONST_MKSA_POUND_FORCE'
+     The force of 1 pound weight.
+
+`GSL_CONST_MKSA_KILOPOUND_FORCE'
+     The force of 1 kilopound weight.
+
+`GSL_CONST_MKSA_POUNDAL'
+     The force of 1 poundal.
+
+\1f
+File: gsl-ref.info,  Node: Thermal Energy and Power,  Next: Pressure,  Prev: Mass and Weight,  Up: Physical Constants
+
+40.10 Thermal Energy and Power
+==============================
+
+`GSL_CONST_MKSA_CALORIE'
+     The energy of 1 calorie.
+
+`GSL_CONST_MKSA_BTU'
+     The energy of 1 British Thermal Unit, btu.
+
+`GSL_CONST_MKSA_THERM'
+     The energy of 1 Therm.
+
+`GSL_CONST_MKSA_HORSEPOWER'
+     The power of 1 horsepower.
+
+\1f
+File: gsl-ref.info,  Node: Pressure,  Next: Viscosity,  Prev: Thermal Energy and Power,  Up: Physical Constants
+
+40.11 Pressure
+==============
+
+`GSL_CONST_MKSA_BAR'
+     The pressure of 1 bar.
+
+`GSL_CONST_MKSA_STD_ATMOSPHERE'
+     The pressure of 1 standard atmosphere.
+
+`GSL_CONST_MKSA_TORR'
+     The pressure of 1 torr.
+
+`GSL_CONST_MKSA_METER_OF_MERCURY'
+     The pressure of 1 meter of mercury.
+
+`GSL_CONST_MKSA_INCH_OF_MERCURY'
+     The pressure of 1 inch of mercury.
+
+`GSL_CONST_MKSA_INCH_OF_WATER'
+     The pressure of 1 inch of water.
+
+`GSL_CONST_MKSA_PSI'
+     The pressure of 1 pound per square inch.
+
+\1f
+File: gsl-ref.info,  Node: Viscosity,  Next: Light and Illumination,  Prev: Pressure,  Up: Physical Constants
+
+40.12 Viscosity
+===============
+
+`GSL_CONST_MKSA_POISE'
+     The dynamic viscosity of 1 poise.
+
+`GSL_CONST_MKSA_STOKES'
+     The kinematic viscosity of 1 stokes.
+
+\1f
+File: gsl-ref.info,  Node: Light and Illumination,  Next: Radioactivity,  Prev: Viscosity,  Up: Physical Constants
+
+40.13 Light and Illumination
+============================
+
+`GSL_CONST_MKSA_STILB'
+     The luminance of 1 stilb.
+
+`GSL_CONST_MKSA_LUMEN'
+     The luminous flux of 1 lumen.
+
+`GSL_CONST_MKSA_LUX'
+     The illuminance of 1 lux.
+
+`GSL_CONST_MKSA_PHOT'
+     The illuminance of 1 phot.
+
+`GSL_CONST_MKSA_FOOTCANDLE'
+     The illuminance of 1 footcandle.
+
+`GSL_CONST_MKSA_LAMBERT'
+     The luminance of 1 lambert.
+
+`GSL_CONST_MKSA_FOOTLAMBERT'
+     The luminance of 1 footlambert.
+
+\1f
+File: gsl-ref.info,  Node: Radioactivity,  Next: Force and Energy,  Prev: Light and Illumination,  Up: Physical Constants
+
+40.14 Radioactivity
+===================
+
+`GSL_CONST_MKSA_CURIE'
+     The activity of 1 curie.
+
+`GSL_CONST_MKSA_ROENTGEN'
+     The exposure of 1 roentgen.
+
+`GSL_CONST_MKSA_RAD'
+     The absorbed dose of 1 rad.
+
+\1f
+File: gsl-ref.info,  Node: Force and Energy,  Next: Prefixes,  Prev: Radioactivity,  Up: Physical Constants
+
+40.15 Force and Energy
+======================
+
+`GSL_CONST_MKSA_NEWTON'
+     The SI unit of force, 1 Newton.
+
+`GSL_CONST_MKSA_DYNE'
+     The force of 1 Dyne = 10^-5 Newton.
+
+`GSL_CONST_MKSA_JOULE'
+     The SI unit of energy, 1 Joule.
+
+`GSL_CONST_MKSA_ERG'
+     The energy 1 erg = 10^-7 Joule.
+
+\1f
+File: gsl-ref.info,  Node: Prefixes,  Next: Physical Constant Examples,  Prev: Force and Energy,  Up: Physical Constants
+
+40.16 Prefixes
+==============
+
+These constants are dimensionless scaling factors.
+
+`GSL_CONST_NUM_YOTTA'
+     10^24
+
+`GSL_CONST_NUM_ZETTA'
+     10^21
+
+`GSL_CONST_NUM_EXA'
+     10^18
+
+`GSL_CONST_NUM_PETA'
+     10^15
+
+`GSL_CONST_NUM_TERA'
+     10^12
+
+`GSL_CONST_NUM_GIGA'
+     10^9
+
+`GSL_CONST_NUM_MEGA'
+     10^6
+
+`GSL_CONST_NUM_KILO'
+     10^3
+
+`GSL_CONST_NUM_MILLI'
+     10^-3
+
+`GSL_CONST_NUM_MICRO'
+     10^-6
+
+`GSL_CONST_NUM_NANO'
+     10^-9
+
+`GSL_CONST_NUM_PICO'
+     10^-12
+
+`GSL_CONST_NUM_FEMTO'
+     10^-15
+
+`GSL_CONST_NUM_ATTO'
+     10^-18
+
+`GSL_CONST_NUM_ZEPTO'
+     10^-21
+
+`GSL_CONST_NUM_YOCTO'
+     10^-24
+
+\1f
+File: gsl-ref.info,  Node: Physical Constant Examples,  Next: Physical Constant References and Further Reading,  Prev: Prefixes,  Up: Physical Constants
+
+40.17 Examples
+==============
+
+The following program demonstrates the use of the physical constants in
+a calculation.  In this case, the goal is to calculate the range of
+light-travel times from Earth to Mars.
+
+   The required data is the average distance of each planet from the
+Sun in astronomical units (the eccentricities and inclinations of the
+orbits will be neglected for the purposes of this calculation).  The
+average radius of the orbit of Mars is 1.52 astronomical units, and for
+the orbit of Earth it is 1 astronomical unit (by definition).  These
+values are combined with the MKSA values of the constants for the speed
+of light and the length of an astronomical unit to produce a result for
+the shortest and longest light-travel times in seconds.  The figures are
+converted into minutes before being displayed.
+
+     #include <stdio.h>
+     #include <gsl/gsl_const_mksa.h>
+
+     int
+     main (void)
+     {
+       double c  = GSL_CONST_MKSA_SPEED_OF_LIGHT;
+       double au = GSL_CONST_MKSA_ASTRONOMICAL_UNIT;
+       double minutes = GSL_CONST_MKSA_MINUTE;
+
+       /* distance stored in meters */
+       double r_earth = 1.00 * au;
+       double r_mars  = 1.52 * au;
+
+       double t_min, t_max;
+
+       t_min = (r_mars - r_earth) / c;
+       t_max = (r_mars + r_earth) / c;
+
+       printf ("light travel time from Earth to Mars:\n");
+       printf ("minimum = %.1f minutes\n", t_min / minutes);
+       printf ("maximum = %.1f minutes\n", t_max / minutes);
+
+       return 0;
+     }
+
+Here is the output from the program,
+
+     light travel time from Earth to Mars:
+     minimum = 4.3 minutes
+     maximum = 21.0 minutes
+
+\1f
+File: gsl-ref.info,  Node: Physical Constant References and Further Reading,  Prev: Physical Constant Examples,  Up: Physical Constants
+
+40.18 References and Further Reading
+====================================
+
+The authoritative sources for physical constants are the 2006 CODATA
+recommended values, published in the article below. Further information
+on the values of physical constants is also available from the NIST
+website.
+
+     P.J. Mohr, B.N. Taylor, D.B. Newell, "CODATA Recommended Values of
+     the Fundamental Physical Constants: 2006", Reviews of Modern
+     Physics, 80(2), pp. 633-730 (2008).
+
+     `http://www.physics.nist.gov/cuu/Constants/index.html'
+
+     `http://physics.nist.gov/Pubs/SP811/appenB9.html'
+
+\1f
+File: gsl-ref.info,  Node: IEEE floating-point arithmetic,  Next: Debugging Numerical Programs,  Prev: Physical Constants,  Up: Top
+
+41 IEEE floating-point arithmetic
+*********************************
+
+This chapter describes functions for examining the representation of
+floating point numbers and controlling the floating point environment of
+your program.  The functions described in this chapter are declared in
+the header file `gsl_ieee_utils.h'.
+
+* Menu:
+
+* Representation of floating point numbers::
+* Setting up your IEEE environment::
+* IEEE References and Further Reading::
+
+\1f
+File: gsl-ref.info,  Node: Representation of floating point numbers,  Next: Setting up your IEEE environment,  Up: IEEE floating-point arithmetic
+
+41.1 Representation of floating point numbers
+=============================================
+
+The IEEE Standard for Binary Floating-Point Arithmetic defines binary
+formats for single and double precision numbers.  Each number is
+composed of three parts: a "sign bit" (s), an "exponent" (E) and a
+"fraction" (f).  The numerical value of the combination (s,E,f) is
+given by the following formula,
+
+     (-1)^s (1.fffff...) 2^E
+
+The sign bit is either zero or one.  The exponent ranges from a minimum
+value E_min to a maximum value E_max depending on the precision.  The
+exponent is converted to an unsigned number e, known as the "biased
+exponent", for storage by adding a "bias" parameter, e = E + bias.  The
+sequence fffff... represents the digits of the binary fraction f.  The
+binary digits are stored in "normalized form", by adjusting the
+exponent to give a leading digit of 1.  Since the leading digit is
+always 1 for normalized numbers it is assumed implicitly and does not
+have to be stored.  Numbers smaller than 2^(E_min) are be stored in
+"denormalized form" with a leading zero,
+
+     (-1)^s (0.fffff...) 2^(E_min)
+
+This allows gradual underflow down to 2^(E_min - p) for p bits of
+precision.  A zero is encoded with the special exponent of 2^(E_min -
+1) and infinities with the exponent of 2^(E_max + 1).
+
+The format for single precision numbers uses 32 bits divided in the
+following way,
+
+     seeeeeeeefffffffffffffffffffffff
+
+     s = sign bit, 1 bit
+     e = exponent, 8 bits  (E_min=-126, E_max=127, bias=127)
+     f = fraction, 23 bits
+
+The format for double precision numbers uses 64 bits divided in the
+following way,
+
+     seeeeeeeeeeeffffffffffffffffffffffffffffffffffffffffffffffffffff
+
+     s = sign bit, 1 bit
+     e = exponent, 11 bits  (E_min=-1022, E_max=1023, bias=1023)
+     f = fraction, 52 bits
+
+It is often useful to be able to investigate the behavior of a
+calculation at the bit-level and the library provides functions for
+printing the IEEE representations in a human-readable form.
+
+ -- Function: void gsl_ieee_fprintf_float (FILE * STREAM, const float *
+          X)
+ -- Function: void gsl_ieee_fprintf_double (FILE * STREAM, const double
+          * X)
+     These functions output a formatted version of the IEEE
+     floating-point number pointed to by X to the stream STREAM. A
+     pointer is used to pass the number indirectly, to avoid any
+     undesired promotion from `float' to `double'.  The output takes
+     one of the following forms,
+
+    `NaN'
+          the Not-a-Number symbol
+
+    `Inf, -Inf'
+          positive or negative infinity
+
+    `1.fffff...*2^E, -1.fffff...*2^E'
+          a normalized floating point number
+
+    `0.fffff...*2^E, -0.fffff...*2^E'
+          a denormalized floating point number
+
+    `0, -0'
+          positive or negative zero
+
+
+     The output can be used directly in GNU Emacs Calc mode by
+     preceding it with `2#' to indicate binary.
+
+ -- Function: void gsl_ieee_printf_float (const float * X)
+ -- Function: void gsl_ieee_printf_double (const double * X)
+     These functions output a formatted version of the IEEE
+     floating-point number pointed to by X to the stream `stdout'.
+
+The following program demonstrates the use of the functions by printing
+the single and double precision representations of the fraction 1/3.
+For comparison the representation of the value promoted from single to
+double precision is also printed.
+
+     #include <stdio.h>
+     #include <gsl/gsl_ieee_utils.h>
+
+     int
+     main (void)
+     {
+       float f = 1.0/3.0;
+       double d = 1.0/3.0;
+
+       double fd = f; /* promote from float to double */
+
+       printf (" f="); gsl_ieee_printf_float(&f);
+       printf ("\n");
+
+       printf ("fd="); gsl_ieee_printf_double(&fd);
+       printf ("\n");
+
+       printf (" d="); gsl_ieee_printf_double(&d);
+       printf ("\n");
+
+       return 0;
+     }
+
+The binary representation of 1/3 is 0.01010101... .  The output below
+shows that the IEEE format normalizes this fraction to give a leading
+digit of 1,
+
+      f= 1.01010101010101010101011*2^-2
+     fd= 1.0101010101010101010101100000000000000000000000000000*2^-2
+      d= 1.0101010101010101010101010101010101010101010101010101*2^-2
+
+The output also shows that a single-precision number is promoted to
+double-precision by adding zeros in the binary representation.
+
+\1f
+File: gsl-ref.info,  Node: Setting up your IEEE environment,  Next: IEEE References and Further Reading,  Prev: Representation of floating point numbers,  Up: IEEE floating-point arithmetic
+
+41.2 Setting up your IEEE environment
+=====================================
+
+The IEEE standard defines several "modes" for controlling the behavior
+of floating point operations.  These modes specify the important
+properties of computer arithmetic: the direction used for rounding (e.g.
+whether numbers should be rounded up, down or to the nearest number),
+the rounding precision and how the program should handle arithmetic
+exceptions, such as division by zero.
+
+   Many of these features can now be controlled via standard functions
+such as `fpsetround', which should be used whenever they are available.
+Unfortunately in the past there has been no universal API for
+controlling their behavior--each system has had its own low-level way
+of accessing them.  To help you write portable programs GSL allows you
+to specify modes in a platform-independent way using the environment
+variable `GSL_IEEE_MODE'.  The library then takes care of all the
+necessary machine-specific initializations for you when you call the
+function `gsl_ieee_env_setup'.
+
+ -- Function: void gsl_ieee_env_setup ()
+     This function reads the environment variable `GSL_IEEE_MODE' and
+     attempts to set up the corresponding specified IEEE modes.  The
+     environment variable should be a list of keywords, separated by
+     commas, like this,
+
+          `GSL_IEEE_MODE' = "KEYWORD,KEYWORD,..."
+
+     where KEYWORD is one of the following mode-names,
+
+          `single-precision'
+
+          `double-precision'
+
+          `extended-precision'
+
+          `round-to-nearest'
+
+          `round-down'
+
+          `round-up'
+
+          `round-to-zero'
+
+          `mask-all'
+
+          `mask-invalid'
+
+          `mask-denormalized'
+
+          `mask-division-by-zero'
+
+          `mask-overflow'
+
+          `mask-underflow'
+
+          `trap-inexact'
+
+          `trap-common'
+
+     If `GSL_IEEE_MODE' is empty or undefined then the function returns
+     immediately and no attempt is made to change the system's IEEE
+     mode.  When the modes from `GSL_IEEE_MODE' are turned on the
+     function prints a short message showing the new settings to remind
+     you that the results of the program will be affected.
+
+     If the requested modes are not supported by the platform being
+     used then the function calls the error handler and returns an
+     error code of `GSL_EUNSUP'.
+
+     When options are specified using this method, the resulting mode is
+     based on a default setting of the highest available precision
+     (double precision or extended precision, depending on the
+     platform) in round-to-nearest mode, with all exceptions enabled
+     apart from the INEXACT exception.  The INEXACT exception is
+     generated whenever rounding occurs, so it must generally be
+     disabled in typical scientific calculations.  All other
+     floating-point exceptions are enabled by default, including
+     underflows and the use of denormalized numbers, for safety.  They
+     can be disabled with the individual `mask-' settings or together
+     using `mask-all'.
+
+     The following adjusted combination of modes is convenient for many
+     purposes,
+
+          GSL_IEEE_MODE="double-precision,"\
+                          "mask-underflow,"\
+                            "mask-denormalized"
+
+     This choice ignores any errors relating to small numbers (either
+     denormalized, or underflowing to zero) but traps overflows,
+     division by zero and invalid operations.
+
+     Note that on the x86 series of processors this function sets both
+     the original x87 mode and the newer MXCSR mode, which controls SSE
+     floating-point operations.  The SSE floating-point units do not
+     have a precision-control bit, and always work in double-precision.
+     The single-precision and extended-precision keywords have no
+     effect in this case.
+
+To demonstrate the effects of different rounding modes consider the
+following program which computes e, the base of natural logarithms, by
+summing a rapidly-decreasing series,
+
+     e = 1 + 1/2! + 1/3! + 1/4! + ...
+       = 2.71828182846...
+
+     #include <stdio.h>
+     #include <gsl/gsl_math.h>
+     #include <gsl/gsl_ieee_utils.h>
+
+     int
+     main (void)
+     {
+       double x = 1, oldsum = 0, sum = 0;
+       int i = 0;
+
+       gsl_ieee_env_setup (); /* read GSL_IEEE_MODE */
+
+       do
+         {
+           i++;
+
+           oldsum = sum;
+           sum += x;
+           x = x / i;
+
+           printf ("i=%2d sum=%.18f error=%g\n",
+                   i, sum, sum - M_E);
+
+           if (i > 30)
+              break;
+         }
+       while (sum != oldsum);
+
+       return 0;
+     }
+
+Here are the results of running the program in `round-to-nearest' mode.
+This is the IEEE default so it isn't really necessary to specify it
+here,
+
+     $ GSL_IEEE_MODE="round-to-nearest" ./a.out
+     i= 1 sum=1.000000000000000000 error=-1.71828
+     i= 2 sum=2.000000000000000000 error=-0.718282
+     ....
+     i=18 sum=2.718281828459045535 error=4.44089e-16
+     i=19 sum=2.718281828459045535 error=4.44089e-16
+
+After nineteen terms the sum converges to within 4 \times 10^-16 of the
+correct value.  If we now change the rounding mode to `round-down' the
+final result is less accurate,
+
+     $ GSL_IEEE_MODE="round-down" ./a.out
+     i= 1 sum=1.000000000000000000 error=-1.71828
+     ....
+     i=19 sum=2.718281828459041094 error=-3.9968e-15
+
+The result is about 4 \times 10^-15 below the correct value, an order
+of magnitude worse than the result obtained in the `round-to-nearest'
+mode.
+
+   If we change to rounding mode to `round-up' then the final result is
+higher than the correct value (when we add each term to the sum the
+final result is always rounded up, which increases the sum by at least
+one tick until the added term underflows to zero).  To avoid this
+problem we would need to use a safer converge criterion, such as `while
+(fabs(sum - oldsum) > epsilon)', with a suitably chosen value of
+epsilon.
+
+   Finally we can see the effect of computing the sum using
+single-precision rounding, in the default `round-to-nearest' mode.  In
+this case the program thinks it is still using double precision numbers
+but the CPU rounds the result of each floating point operation to
+single-precision accuracy.  This simulates the effect of writing the
+program using single-precision `float' variables instead of `double'
+variables.  The iteration stops after about half the number of
+iterations and the final result is much less accurate,
+
+     $ GSL_IEEE_MODE="single-precision" ./a.out
+     ....
+     i=12 sum=2.718281984329223633 error=1.5587e-07
+
+with an error of O(10^-7), which corresponds to single precision
+accuracy (about 1 part in 10^7).  Continuing the iterations further
+does not decrease the error because all the subsequent results are
+rounded to the same value.
+
+\1f
+File: gsl-ref.info,  Node: IEEE References and Further Reading,  Prev: Setting up your IEEE environment,  Up: IEEE floating-point arithmetic
+
+41.3 References and Further Reading
+===================================
+
+The reference for the IEEE standard is,
+
+     ANSI/IEEE Std 754-1985, IEEE Standard for Binary Floating-Point
+     Arithmetic.
+
+A more pedagogical introduction to the standard can be found in the
+following paper,
+
+     David Goldberg: What Every Computer Scientist Should Know About
+     Floating-Point Arithmetic. `ACM Computing Surveys', Vol. 23, No. 1
+     (March 1991), pages 5-48.
+
+     Corrigendum: `ACM Computing Surveys', Vol. 23, No. 3 (September
+     1991), page 413. and see also the sections by B. A. Wichmann and
+     Charles B. Dunham in Surveyor's Forum: "What Every Computer
+     Scientist Should Know About Floating-Point Arithmetic". `ACM
+     Computing Surveys', Vol. 24, No. 3 (September 1992), page 319.
+
+A detailed textbook on IEEE arithmetic and its practical use is
+available from SIAM Press,
+
+     Michael L. Overton, `Numerical Computing with IEEE Floating Point
+     Arithmetic', SIAM Press, ISBN 0898715717.
+
+
+\1f
+File: gsl-ref.info,  Node: Debugging Numerical Programs,  Next: Contributors to GSL,  Prev: IEEE floating-point arithmetic,  Up: Top
+
+Appendix A Debugging Numerical Programs
+***************************************
+
+This chapter describes some tips and tricks for debugging numerical
+programs which use GSL.
+
+* Menu:
+
+* Using gdb::
+* Examining floating point registers::
+* Handling floating point exceptions::
+* GCC warning options for numerical programs::
+* Debugging References::
+
+\1f
+File: gsl-ref.info,  Node: Using gdb,  Next: Examining floating point registers,  Up: Debugging Numerical Programs
+
+A.1 Using gdb
+=============
+
+Any errors reported by the library are passed to the function
+`gsl_error'.  By running your programs under gdb and setting a
+breakpoint in this function you can automatically catch any library
+errors.  You can add a breakpoint for every session by putting
+
+     break gsl_error
+
+into your `.gdbinit' file in the directory where your program is
+started.
+
+   If the breakpoint catches an error then you can use a backtrace
+(`bt') to see the call-tree, and the arguments which possibly caused
+the error.  By moving up into the calling function you can investigate
+the values of variables at that point.  Here is an example from the
+program `fft/test_trap', which contains the following line,
+
+     status = gsl_fft_complex_wavetable_alloc (0, &complex_wavetable);
+
+The function `gsl_fft_complex_wavetable_alloc' takes the length of an
+FFT as its first argument.  When this line is executed an error will be
+generated because the length of an FFT is not allowed to be zero.
+
+   To debug this problem we start `gdb', using the file `.gdbinit' to
+define a breakpoint in `gsl_error',
+
+     $ gdb test_trap
+
+     GDB is free software and you are welcome to distribute copies
+     of it under certain conditions; type "show copying" to see
+     the conditions.  There is absolutely no warranty for GDB;
+     type "show warranty" for details.  GDB 4.16 (i586-debian-linux),
+     Copyright 1996 Free Software Foundation, Inc.
+
+     Breakpoint 1 at 0x8050b1e: file error.c, line 14.
+
+When we run the program this breakpoint catches the error and shows the
+reason for it.
+
+     (gdb) run
+     Starting program: test_trap
+
+     Breakpoint 1, gsl_error (reason=0x8052b0d
+         "length n must be positive integer",
+         file=0x8052b04 "c_init.c", line=108, gsl_errno=1)
+         at error.c:14
+     14        if (gsl_error_handler)
+
+The first argument of `gsl_error' is always a string describing the
+error.  Now we can look at the backtrace to see what caused the problem,
+
+     (gdb) bt
+     #0  gsl_error (reason=0x8052b0d
+         "length n must be positive integer",
+         file=0x8052b04 "c_init.c", line=108, gsl_errno=1)
+         at error.c:14
+     #1  0x8049376 in gsl_fft_complex_wavetable_alloc (n=0,
+         wavetable=0xbffff778) at c_init.c:108
+     #2  0x8048a00 in main (argc=1, argv=0xbffff9bc)
+         at test_trap.c:94
+     #3  0x80488be in ___crt_dummy__ ()
+
+We can see that the error was generated in the function
+`gsl_fft_complex_wavetable_alloc' when it was called with an argument
+of N=0.  The original call came from line 94 in the file `test_trap.c'.
+
+   By moving up to the level of the original call we can find the line
+that caused the error,
+
+     (gdb) up
+     #1  0x8049376 in gsl_fft_complex_wavetable_alloc (n=0,
+         wavetable=0xbffff778) at c_init.c:108
+     108   GSL_ERROR ("length n must be positive integer", GSL_EDOM);
+     (gdb) up
+     #2  0x8048a00 in main (argc=1, argv=0xbffff9bc)
+         at test_trap.c:94
+     94    status = gsl_fft_complex_wavetable_alloc (0,
+             &complex_wavetable);
+
+Thus we have found the line that caused the problem.  From this point we
+could also print out the values of other variables such as
+`complex_wavetable'.
+
+\1f
+File: gsl-ref.info,  Node: Examining floating point registers,  Next: Handling floating point exceptions,  Prev: Using gdb,  Up: Debugging Numerical Programs
+
+A.2 Examining floating point registers
+======================================
+
+The contents of floating point registers can be examined using the
+command `info float' (on supported platforms).
+
+     (gdb) info float
+          st0: 0xc4018b895aa17a945000  Valid Normal -7.838871e+308
+          st1: 0x3ff9ea3f50e4d7275000  Valid Normal 0.0285946
+          st2: 0x3fe790c64ce27dad4800  Valid Normal 6.7415931e-08
+          st3: 0x3ffaa3ef0df6607d7800  Spec  Normal 0.0400229
+          st4: 0x3c028000000000000000  Valid Normal 4.4501477e-308
+          st5: 0x3ffef5412c22219d9000  Zero  Normal 0.9580257
+          st6: 0x3fff8000000000000000  Valid Normal 1
+          st7: 0xc4028b65a1f6d243c800  Valid Normal -1.566206e+309
+        fctrl: 0x0272 53 bit; NEAR; mask DENOR UNDER LOS;
+        fstat: 0xb9ba flags 0001; top 7; excep DENOR OVERF UNDER LOS
+         ftag: 0x3fff
+          fip: 0x08048b5c
+          fcs: 0x051a0023
+       fopoff: 0x08086820
+       fopsel: 0x002b
+
+Individual registers can be examined using the variables $REG, where
+REG is the register name.
+
+     (gdb) p $st1
+     $1 = 0.02859464454261210347719
+
+\1f
+File: gsl-ref.info,  Node: Handling floating point exceptions,  Next: GCC warning options for numerical programs,  Prev: Examining floating point registers,  Up: Debugging Numerical Programs
+
+A.3 Handling floating point exceptions
+======================================
+
+It is possible to stop the program whenever a `SIGFPE' floating point
+exception occurs.  This can be useful for finding the cause of an
+unexpected infinity or `NaN'.  The current handler settings can be
+shown with the command `info signal SIGFPE'.
+
+     (gdb) info signal SIGFPE
+     Signal  Stop  Print  Pass to program Description
+     SIGFPE  Yes   Yes    Yes             Arithmetic exception
+
+Unless the program uses a signal handler the default setting should be
+changed so that SIGFPE is not passed to the program, as this would cause
+it to exit.  The command `handle SIGFPE stop nopass' prevents this.
+
+     (gdb) handle SIGFPE stop nopass
+     Signal  Stop  Print  Pass to program Description
+     SIGFPE  Yes   Yes    No              Arithmetic exception
+
+Depending on the platform it may be necessary to instruct the kernel to
+generate signals for floating point exceptions.  For programs using GSL
+this can be achieved using the `GSL_IEEE_MODE' environment variable in
+conjunction with the function `gsl_ieee_env_setup' as described in
+*note IEEE floating-point arithmetic::.
+
+     (gdb) set env GSL_IEEE_MODE=double-precision
+
+\1f
+File: gsl-ref.info,  Node: GCC warning options for numerical programs,  Next: Debugging References,  Prev: Handling floating point exceptions,  Up: Debugging Numerical Programs
+
+A.4 GCC warning options for numerical programs
+==============================================
+
+Writing reliable numerical programs in C requires great care.  The
+following GCC warning options are recommended when compiling numerical
+programs:
+
+     gcc -ansi -pedantic -Werror -Wall -W
+       -Wmissing-prototypes -Wstrict-prototypes
+       -Wconversion -Wshadow -Wpointer-arith
+       -Wcast-qual -Wcast-align
+       -Wwrite-strings -Wnested-externs
+       -fshort-enums -fno-common -Dinline= -g -O2
+
+For details of each option consult the manual `Using and Porting GCC'.
+The following table gives a brief explanation of what types of errors
+these options catch.
+
+`-ansi -pedantic'
+     Use ANSI C, and reject any non-ANSI extensions.  These flags help
+     in writing portable programs that will compile on other systems.
+
+`-Werror'
+     Consider warnings to be errors, so that compilation stops.  This
+     prevents warnings from scrolling off the top of the screen and
+     being lost.  You won't be able to compile the program until it is
+     completely warning-free.
+
+`-Wall'
+     This turns on a set of warnings for common programming problems.
+     You need `-Wall', but it is not enough on its own.
+
+`-O2'
+     Turn on optimization.  The warnings for uninitialized variables in
+     `-Wall' rely on the optimizer to analyze the code.  If there is no
+     optimization then these warnings aren't generated.
+
+`-W'
+     This turns on some extra warnings not included in `-Wall', such as
+     missing return values and comparisons between signed and unsigned
+     integers.
+
+`-Wmissing-prototypes -Wstrict-prototypes'
+     Warn if there are any missing or inconsistent prototypes.  Without
+     prototypes it is harder to detect problems with incorrect
+     arguments.
+
+`-Wconversion'
+     The main use of this option is to warn about conversions from
+     signed to unsigned integers.  For example, `unsigned int x = -1'.
+     If you need to perform such a conversion you can use an explicit
+     cast.
+
+`-Wshadow'
+     This warns whenever a local variable shadows another local
+     variable.  If two variables have the same name then it is a
+     potential source of confusion.
+
+`-Wpointer-arith -Wcast-qual -Wcast-align'
+     These options warn if you try to do pointer arithmetic for types
+     which don't have a size, such as `void', if you remove a `const'
+     cast from a pointer, or if you cast a pointer to a type which has a
+     different size, causing an invalid alignment.
+
+`-Wwrite-strings'
+     This option gives string constants a `const' qualifier so that it
+     will be a compile-time error to attempt to overwrite them.
+
+`-fshort-enums'
+     This option makes the type of `enum' as short as possible.
+     Normally this makes an `enum' different from an `int'.
+     Consequently any attempts to assign a pointer-to-int to a
+     pointer-to-enum will generate a cast-alignment warning.
+
+`-fno-common'
+     This option prevents global variables being simultaneously defined
+     in different object files (you get an error at link time).  Such a
+     variable should be defined in one file and referred to in other
+     files with an `extern' declaration.
+
+`-Wnested-externs'
+     This warns if an `extern' declaration is encountered within a
+     function.
+
+`-Dinline='
+     The `inline' keyword is not part of ANSI C. Thus if you want to use
+     `-ansi' with a program which uses inline functions you can use this
+     preprocessor definition to remove the `inline' keywords.
+
+`-g'
+     It always makes sense to put debugging symbols in the executable
+     so that you can debug it using `gdb'.  The only effect of
+     debugging symbols is to increase the size of the file, and you can
+     use the `strip' command to remove them later if necessary.
+
+\1f
+File: gsl-ref.info,  Node: Debugging References,  Prev: GCC warning options for numerical programs,  Up: Debugging Numerical Programs
+
+A.5 References and Further Reading
+==================================
+
+The following books are essential reading for anyone writing and
+debugging numerical programs with GCC and GDB.
+
+     R.M. Stallman, `Using and Porting GNU CC', Free Software
+     Foundation, ISBN 1882114388
+
+     R.M. Stallman, R.H. Pesch, `Debugging with GDB: The GNU
+     Source-Level Debugger', Free Software Foundation, ISBN 1882114779
+
+For a tutorial introduction to the GNU C Compiler and related programs,
+see
+
+     B.J. Gough, `An Introduction to GCC', Network Theory Ltd, ISBN
+     0954161793
+
+\1f
+File: gsl-ref.info,  Node: Contributors to GSL,  Next: Autoconf Macros,  Prev: Debugging Numerical Programs,  Up: Top
+
+Appendix B Contributors to GSL
+******************************
+
+(See the AUTHORS file in the distribution for up-to-date information.)
+
+*Mark Galassi*
+     Conceived GSL (with James Theiler) and wrote the design document.
+     Wrote the simulated annealing package and the relevant chapter in
+     the manual.
+
+*James Theiler*
+     Conceived GSL (with Mark Galassi).  Wrote the random number
+     generators and the relevant chapter in this manual.
+
+*Jim Davies*
+     Wrote the statistical routines and the relevant chapter in this
+     manual.
+
+*Brian Gough*
+     FFTs, numerical integration, random number generators and
+     distributions, root finding, minimization and fitting, polynomial
+     solvers, complex numbers, physical constants, permutations, vector
+     and matrix functions, histograms, statistics, ieee-utils, revised
+     CBLAS Level 2 & 3, matrix decompositions, eigensystems, cumulative
+     distribution functions, testing, documentation and releases.
+
+*Reid Priedhorsky*
+     Wrote and documented the initial version of the root finding
+     routines while at Los Alamos National Laboratory, Mathematical
+     Modeling and Analysis Group.
+
+*Gerard Jungman*
+     Special Functions, Series acceleration, ODEs, BLAS, Linear Algebra,
+     Eigensystems, Hankel Transforms.
+
+*Mike Booth*
+     Wrote the Monte Carlo library.
+
+*Jorma Olavi Ta"htinen*
+     Wrote the initial complex arithmetic functions.
+
+*Thomas Walter*
+     Wrote the initial heapsort routines and Cholesky decomposition.
+
+*Fabrice Rossi*
+     Multidimensional minimization.
+
+*Carlo Perassi*
+     Implementation of the random number generators in Knuth's
+     `Seminumerical Algorithms', 3rd Ed.
+
+*Szymon Jaroszewicz*
+     Wrote the routines for generating combinations.
+
+*Nicolas Darnis*
+     Wrote the cyclic functions and the initial functions for canonical
+     permutations.
+
+*Jason H. Stover*
+     Wrote the major cumulative distribution functions.
+
+*Ivo Alxneit*
+     Wrote the routines for wavelet transforms.
+
+*Tuomo Keskitalo*
+     Improved the implementation of the ODE solvers and wrote the
+     ode-initval2 routines.
+
+*Lowell Johnson*
+     Implementation of the Mathieu functions.
+
+*Patrick Alken*
+     Implementation of non-symmetric and generalized eigensystems and
+     B-splines.
+
+*Rhys Ulerich*
+     Wrote the multiset routines.
+
+*Pavel Holoborodko*
+     Wrote the fixed order Gauss-Legendre quadrature routines.
+
+*Pedro Gonnet*
+     Wrote the CQUAD integration routines.
+
+
+   Thanks to Nigel Lowry for help in proofreading the manual.
+
+   The non-symmetric eigensystems routines contain code based on the
+LAPACK linear algebra library.  LAPACK is distributed under the
+following license:
+
+
+     Copyright (c) 1992-2006 The University of Tennessee.  All rights
+     reserved.
+
+     Redistribution and use in source and binary forms, with or without
+     modification, are permitted provided that the following conditions
+     are met:
+
+     * Redistributions of source code must retain the above copyright
+     notice, this list of conditions and the following disclaimer.
+
+     * Redistributions in binary form must reproduce the above copyright
+     notice, this list of conditions and the following disclaimer listed
+     in this license in the documentation and/or other materials
+     provided with the distribution.
+
+     * Neither the name of the copyright holders nor the names of its
+     contributors may be used to endorse or promote products derived
+     from this software without specific prior written permission.
+
+     THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+     "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+     LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
+     FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
+     COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
+     INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+     (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+     SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+     HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+     CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+     OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
+     EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+\1f
+File: gsl-ref.info,  Node: Autoconf Macros,  Next: GSL CBLAS Library,  Prev: Contributors to GSL,  Up: Top
+
+Appendix C Autoconf Macros
+**************************
+
+For applications using `autoconf' the standard macro `AC_CHECK_LIB' can
+be used to link with GSL automatically from a `configure' script.  The
+library itself depends on the presence of a CBLAS and math library as
+well, so these must also be located before linking with the main
+`libgsl' file.  The following commands should be placed in the
+`configure.ac' file to perform these tests,
+
+     AC_CHECK_LIB([m],[cos])
+     AC_CHECK_LIB([gslcblas],[cblas_dgemm])
+     AC_CHECK_LIB([gsl],[gsl_blas_dgemm])
+
+It is important to check for `libm' and `libgslcblas' before `libgsl',
+otherwise the tests will fail.  Assuming the libraries are found the
+output during the configure stage looks like this,
+
+     checking for cos in -lm... yes
+     checking for cblas_dgemm in -lgslcblas... yes
+     checking for gsl_blas_dgemm in -lgsl... yes
+
+If the library is found then the tests will define the macros
+`HAVE_LIBGSL', `HAVE_LIBGSLCBLAS', `HAVE_LIBM' and add the options
+`-lgsl -lgslcblas -lm' to the variable `LIBS'.
+
+   The tests above will find any version of the library.  They are
+suitable for general use, where the versions of the functions are not
+important.  An alternative macro is available in the file `gsl.m4' to
+test for a specific version of the library.  To use this macro simply
+add the following line to your `configure.in' file instead of the tests
+above:
+
+     AX_PATH_GSL(GSL_VERSION,
+                [action-if-found],
+                [action-if-not-found])
+
+The argument `GSL_VERSION' should be the two or three digit MAJOR.MINOR
+or MAJOR.MINOR.MICRO version number of the release you require. A
+suitable choice for `action-if-not-found' is,
+
+     AC_MSG_ERROR(could not find required version of GSL)
+
+Then you can add the variables `GSL_LIBS' and `GSL_CFLAGS' to your
+Makefile.am files to obtain the correct compiler flags.  `GSL_LIBS' is
+equal to the output of the `gsl-config --libs' command and `GSL_CFLAGS'
+is equal to `gsl-config --cflags' command. For example,
+
+     libfoo_la_LDFLAGS = -lfoo $(GSL_LIBS) -lgslcblas
+
+Note that the macro `AX_PATH_GSL' needs to use the C compiler so it
+should appear in the `configure.in' file before the macro
+`AC_LANG_CPLUSPLUS' for programs that use C++.
+
+   To test for `inline' the following test should be placed in your
+`configure.in' file,
+
+     AC_C_INLINE
+
+     if test "$ac_cv_c_inline" != no ; then
+       AC_DEFINE(HAVE_INLINE,1)
+       AC_SUBST(HAVE_INLINE)
+     fi
+
+and the macro will then be defined in the compilation flags or by
+including the file `config.h' before any library headers.
+
+   The following autoconf test will check for `extern inline',
+
+     dnl Check for "extern inline", using a modified version
+     dnl of the test for AC_C_INLINE from acspecific.mt
+     dnl
+     AC_CACHE_CHECK([for extern inline], ac_cv_c_extern_inline,
+     [ac_cv_c_extern_inline=no
+     AC_TRY_COMPILE([extern $ac_cv_c_inline double foo(double x);
+     extern $ac_cv_c_inline double foo(double x) { return x+1.0; };
+     double foo (double x) { return x + 1.0; };],
+     [  foo(1.0)  ],
+     [ac_cv_c_extern_inline="yes"])
+     ])
+
+     if test "$ac_cv_c_extern_inline" != no ; then
+       AC_DEFINE(HAVE_INLINE,1)
+       AC_SUBST(HAVE_INLINE)
+     fi
+
+   The substitution of portability functions can be made automatically
+if you use `autoconf'. For example, to test whether the BSD function
+`hypot' is available you can include the following line in the
+configure file `configure.in' for your application,
+
+     AC_CHECK_FUNCS(hypot)
+
+and place the following macro definitions in the file `config.h.in',
+
+     /* Substitute gsl_hypot for missing system hypot */
+
+     #ifndef HAVE_HYPOT
+     #define hypot gsl_hypot
+     #endif
+
+The application source files can then use the include command `#include
+<config.h>' to substitute `gsl_hypot' for each occurrence of `hypot'
+when `hypot' is not available.
+
+\1f
+File: gsl-ref.info,  Node: GSL CBLAS Library,  Next: Free Software Needs Free Documentation,  Prev: Autoconf Macros,  Up: Top
+
+Appendix D GSL CBLAS Library
+****************************
+
+The prototypes for the low-level CBLAS functions are declared in the
+file `gsl_cblas.h'.  For the definition of the functions consult the
+documentation available from Netlib (*note BLAS References and Further
+Reading::).
+
+* Menu:
+
+* Level 1 CBLAS Functions::
+* Level 2 CBLAS Functions::
+* Level 3 CBLAS Functions::
+* GSL CBLAS Examples::
+
+\1f
+File: gsl-ref.info,  Node: Level 1 CBLAS Functions,  Next: Level 2 CBLAS Functions,  Up: GSL CBLAS Library
+
+D.1 Level 1
+===========
+
+ -- Function: float cblas_sdsdot (const int N, const float ALPHA, const
+          float * X, const int INCX, const float * Y, const int INCY)
+
+ -- Function: double cblas_dsdot (const int N, const float * X, const
+          int INCX, const float * Y, const int INCY)
+
+ -- Function: float cblas_sdot (const int N, const float * X, const int
+          INCX, const float * Y, const int INCY)
+
+ -- Function: double cblas_ddot (const int N, const double * X, const
+          int INCX, const double * Y, const int INCY)
+
+ -- Function: void cblas_cdotu_sub (const int N, const void * X, const
+          int INCX, const void * Y, const int INCY, void * DOTU)
+
+ -- Function: void cblas_cdotc_sub (const int N, const void * X, const
+          int INCX, const void * Y, const int INCY, void * DOTC)
+
+ -- Function: void cblas_zdotu_sub (const int N, const void * X, const
+          int INCX, const void * Y, const int INCY, void * DOTU)
+
+ -- Function: void cblas_zdotc_sub (const int N, const void * X, const
+          int INCX, const void * Y, const int INCY, void * DOTC)
+
+ -- Function: float cblas_snrm2 (const int N, const float * X, const
+          int INCX)
+
+ -- Function: float cblas_sasum (const int N, const float * X, const
+          int INCX)
+
+ -- Function: double cblas_dnrm2 (const int N, const double * X, const
+          int INCX)
+
+ -- Function: double cblas_dasum (const int N, const double * X, const
+          int INCX)
+
+ -- Function: float cblas_scnrm2 (const int N, const void * X, const
+          int INCX)
+
+ -- Function: float cblas_scasum (const int N, const void * X, const
+          int INCX)
+
+ -- Function: double cblas_dznrm2 (const int N, const void * X, const
+          int INCX)
+
+ -- Function: double cblas_dzasum (const int N, const void * X, const
+          int INCX)
+
+ -- Function: CBLAS_INDEX cblas_isamax (const int N, const float * X,
+          const int INCX)
+
+ -- Function: CBLAS_INDEX cblas_idamax (const int N, const double * X,
+          const int INCX)
+
+ -- Function: CBLAS_INDEX cblas_icamax (const int N, const void * X,
+          const int INCX)
+
+ -- Function: CBLAS_INDEX cblas_izamax (const int N, const void * X,
+          const int INCX)
+
+ -- Function: void cblas_sswap (const int N, float * X, const int INCX,
+          float * Y, const int INCY)
+
+ -- Function: void cblas_scopy (const int N, const float * X, const int
+          INCX, float * Y, const int INCY)
+
+ -- Function: void cblas_saxpy (const int N, const float ALPHA, const
+          float * X, const int INCX, float * Y, const int INCY)
+
+ -- Function: void cblas_dswap (const int N, double * X, const int
+          INCX, double * Y, const int INCY)
+
+ -- Function: void cblas_dcopy (const int N, const double * X, const
+          int INCX, double * Y, const int INCY)
+
+ -- Function: void cblas_daxpy (const int N, const double ALPHA, const
+          double * X, const int INCX, double * Y, const int INCY)
+
+ -- Function: void cblas_cswap (const int N, void * X, const int INCX,
+          void * Y, const int INCY)
+
+ -- Function: void cblas_ccopy (const int N, const void * X, const int
+          INCX, void * Y, const int INCY)
+
+ -- Function: void cblas_caxpy (const int N, const void * ALPHA, const
+          void * X, const int INCX, void * Y, const int INCY)
+
+ -- Function: void cblas_zswap (const int N, void * X, const int INCX,
+          void * Y, const int INCY)
+
+ -- Function: void cblas_zcopy (const int N, const void * X, const int
+          INCX, void * Y, const int INCY)
+
+ -- Function: void cblas_zaxpy (const int N, const void * ALPHA, const
+          void * X, const int INCX, void * Y, const int INCY)
+
+ -- Function: void cblas_srotg (float * A, float * B, float * C, float
+          * S)
+
+ -- Function: void cblas_srotmg (float * D1, float * D2, float * B1,
+          const float B2, float * P)
+
+ -- Function: void cblas_srot (const int N, float * X, const int INCX,
+          float * Y, const int INCY, const float C, const float S)
+
+ -- Function: void cblas_srotm (const int N, float * X, const int INCX,
+          float * Y, const int INCY, const float * P)
+
+ -- Function: void cblas_drotg (double * A, double * B, double * C,
+          double * S)
+
+ -- Function: void cblas_drotmg (double * D1, double * D2, double * B1,
+          const double B2, double * P)
+
+ -- Function: void cblas_drot (const int N, double * X, const int INCX,
+          double * Y, const int INCY, const double C, const double S)
+
+ -- Function: void cblas_drotm (const int N, double * X, const int
+          INCX, double * Y, const int INCY, const double * P)
+
+ -- Function: void cblas_sscal (const int N, const float ALPHA, float *
+          X, const int INCX)
+
+ -- Function: void cblas_dscal (const int N, const double ALPHA, double
+          * X, const int INCX)
+
+ -- Function: void cblas_cscal (const int N, const void * ALPHA, void *
+          X, const int INCX)
+
+ -- Function: void cblas_zscal (const int N, const void * ALPHA, void *
+          X, const int INCX)
+
+ -- Function: void cblas_csscal (const int N, const float ALPHA, void *
+          X, const int INCX)
+
+ -- Function: void cblas_zdscal (const int N, const double ALPHA, void
+          * X, const int INCX)
+
+\1f
+File: gsl-ref.info,  Node: Level 2 CBLAS Functions,  Next: Level 3 CBLAS Functions,  Prev: Level 1 CBLAS Functions,  Up: GSL CBLAS Library
+
+D.2 Level 2
+===========
+
+ -- Function: void cblas_sgemv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_TRANSPOSE TRANSA, const int M, const int N, const
+          float ALPHA, const float * A, const int LDA, const float * X,
+          const int INCX, const float BETA, float * Y, const int INCY)
+
+ -- Function: void cblas_sgbmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_TRANSPOSE TRANSA, const int M, const int N, const
+          int KL, const int KU, const float ALPHA, const float * A,
+          const int LDA, const float * X, const int INCX, const float
+          BETA, float * Y, const int INCY)
+
+ -- Function: void cblas_strmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const float * A,
+          const int LDA, float * X, const int INCX)
+
+ -- Function: void cblas_stbmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const int K, const
+          float * A, const int LDA, float * X, const int INCX)
+
+ -- Function: void cblas_stpmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const float * AP,
+          float * X, const int INCX)
+
+ -- Function: void cblas_strsv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const float * A,
+          const int LDA, float * X, const int INCX)
+
+ -- Function: void cblas_stbsv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const int K, const
+          float * A, const int LDA, float * X, const int INCX)
+
+ -- Function: void cblas_stpsv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const float * AP,
+          float * X, const int INCX)
+
+ -- Function: void cblas_dgemv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_TRANSPOSE TRANSA, const int M, const int N, const
+          double ALPHA, const double * A, const int LDA, const double *
+          X, const int INCX, const double BETA, double * Y, const int
+          INCY)
+
+ -- Function: void cblas_dgbmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_TRANSPOSE TRANSA, const int M, const int N, const
+          int KL, const int KU, const double ALPHA, const double * A,
+          const int LDA, const double * X, const int INCX, const double
+          BETA, double * Y, const int INCY)
+
+ -- Function: void cblas_dtrmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const double * A,
+          const int LDA, double * X, const int INCX)
+
+ -- Function: void cblas_dtbmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const int K, const
+          double * A, const int LDA, double * X, const int INCX)
+
+ -- Function: void cblas_dtpmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const double * AP,
+          double * X, const int INCX)
+
+ -- Function: void cblas_dtrsv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const double * A,
+          const int LDA, double * X, const int INCX)
+
+ -- Function: void cblas_dtbsv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const int K, const
+          double * A, const int LDA, double * X, const int INCX)
+
+ -- Function: void cblas_dtpsv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const double * AP,
+          double * X, const int INCX)
+
+ -- Function: void cblas_cgemv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_TRANSPOSE TRANSA, const int M, const int N, const
+          void * ALPHA, const void * A, const int LDA, const void * X,
+          const int INCX, const void * BETA, void * Y, const int INCY)
+
+ -- Function: void cblas_cgbmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_TRANSPOSE TRANSA, const int M, const int N, const
+          int KL, const int KU, const void * ALPHA, const void * A,
+          const int LDA, const void * X, const int INCX, const void *
+          BETA, void * Y, const int INCY)
+
+ -- Function: void cblas_ctrmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const void * A,
+          const int LDA, void * X, const int INCX)
+
+ -- Function: void cblas_ctbmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const int K, const
+          void * A, const int LDA, void * X, const int INCX)
+
+ -- Function: void cblas_ctpmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const void * AP,
+          void * X, const int INCX)
+
+ -- Function: void cblas_ctrsv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const void * A,
+          const int LDA, void * X, const int INCX)
+
+ -- Function: void cblas_ctbsv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const int K, const
+          void * A, const int LDA, void * X, const int INCX)
+
+ -- Function: void cblas_ctpsv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const void * AP,
+          void * X, const int INCX)
+
+ -- Function: void cblas_zgemv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_TRANSPOSE TRANSA, const int M, const int N, const
+          void * ALPHA, const void * A, const int LDA, const void * X,
+          const int INCX, const void * BETA, void * Y, const int INCY)
+
+ -- Function: void cblas_zgbmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_TRANSPOSE TRANSA, const int M, const int N, const
+          int KL, const int KU, const void * ALPHA, const void * A,
+          const int LDA, const void * X, const int INCX, const void *
+          BETA, void * Y, const int INCY)
+
+ -- Function: void cblas_ztrmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const void * A,
+          const int LDA, void * X, const int INCX)
+
+ -- Function: void cblas_ztbmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const int K, const
+          void * A, const int LDA, void * X, const int INCX)
+
+ -- Function: void cblas_ztpmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const void * AP,
+          void * X, const int INCX)
+
+ -- Function: void cblas_ztrsv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const void * A,
+          const int LDA, void * X, const int INCX)
+
+ -- Function: void cblas_ztbsv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const int K, const
+          void * A, const int LDA, void * X, const int INCX)
+
+ -- Function: void cblas_ztpsv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANSA,
+          const enum CBLAS_DIAG DIAG, const int N, const void * AP,
+          void * X, const int INCX)
+
+ -- Function: void cblas_ssymv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const float ALPHA, const
+          float * A, const int LDA, const float * X, const int INCX,
+          const float BETA, float * Y, const int INCY)
+
+ -- Function: void cblas_ssbmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const int K, const float
+          ALPHA, const float * A, const int LDA, const float * X, const
+          int INCX, const float BETA, float * Y, const int INCY)
+
+ -- Function: void cblas_sspmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const float ALPHA, const
+          float * AP, const float * X, const int INCX, const float
+          BETA, float * Y, const int INCY)
+
+ -- Function: void cblas_sger (const enum CBLAS_ORDER ORDER, const int
+          M, const int N, const float ALPHA, const float * X, const int
+          INCX, const float * Y, const int INCY, float * A, const int
+          LDA)
+
+ -- Function: void cblas_ssyr (const enum CBLAS_ORDER ORDER, const enum
+          CBLAS_UPLO UPLO, const int N, const float ALPHA, const float
+          * X, const int INCX, float * A, const int LDA)
+
+ -- Function: void cblas_sspr (const enum CBLAS_ORDER ORDER, const enum
+          CBLAS_UPLO UPLO, const int N, const float ALPHA, const float
+          * X, const int INCX, float * AP)
+
+ -- Function: void cblas_ssyr2 (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const float ALPHA, const
+          float * X, const int INCX, const float * Y, const int INCY,
+          float * A, const int LDA)
+
+ -- Function: void cblas_sspr2 (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const float ALPHA, const
+          float * X, const int INCX, const float * Y, const int INCY,
+          float * A)
+
+ -- Function: void cblas_dsymv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const double ALPHA, const
+          double * A, const int LDA, const double * X, const int INCX,
+          const double BETA, double * Y, const int INCY)
+
+ -- Function: void cblas_dsbmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const int K, const double
+          ALPHA, const double * A, const int LDA, const double * X,
+          const int INCX, const double BETA, double * Y, const int INCY)
+
+ -- Function: void cblas_dspmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const double ALPHA, const
+          double * AP, const double * X, const int INCX, const double
+          BETA, double * Y, const int INCY)
+
+ -- Function: void cblas_dger (const enum CBLAS_ORDER ORDER, const int
+          M, const int N, const double ALPHA, const double * X, const
+          int INCX, const double * Y, const int INCY, double * A, const
+          int LDA)
+
+ -- Function: void cblas_dsyr (const enum CBLAS_ORDER ORDER, const enum
+          CBLAS_UPLO UPLO, const int N, const double ALPHA, const
+          double * X, const int INCX, double * A, const int LDA)
+
+ -- Function: void cblas_dspr (const enum CBLAS_ORDER ORDER, const enum
+          CBLAS_UPLO UPLO, const int N, const double ALPHA, const
+          double * X, const int INCX, double * AP)
+
+ -- Function: void cblas_dsyr2 (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const double ALPHA, const
+          double * X, const int INCX, const double * Y, const int INCY,
+          double * A, const int LDA)
+
+ -- Function: void cblas_dspr2 (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const double ALPHA, const
+          double * X, const int INCX, const double * Y, const int INCY,
+          double * A)
+
+ -- Function: void cblas_chemv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const void * ALPHA, const
+          void * A, const int LDA, const void * X, const int INCX,
+          const void * BETA, void * Y, const int INCY)
+
+ -- Function: void cblas_chbmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const int K, const void *
+          ALPHA, const void * A, const int LDA, const void * X, const
+          int INCX, const void * BETA, void * Y, const int INCY)
+
+ -- Function: void cblas_chpmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const void * ALPHA, const
+          void * AP, const void * X, const int INCX, const void * BETA,
+          void * Y, const int INCY)
+
+ -- Function: void cblas_cgeru (const enum CBLAS_ORDER ORDER, const int
+          M, const int N, const void * ALPHA, const void * X, const int
+          INCX, const void * Y, const int INCY, void * A, const int LDA)
+
+ -- Function: void cblas_cgerc (const enum CBLAS_ORDER ORDER, const int
+          M, const int N, const void * ALPHA, const void * X, const int
+          INCX, const void * Y, const int INCY, void * A, const int LDA)
+
+ -- Function: void cblas_cher (const enum CBLAS_ORDER ORDER, const enum
+          CBLAS_UPLO UPLO, const int N, const float ALPHA, const void *
+          X, const int INCX, void * A, const int LDA)
+
+ -- Function: void cblas_chpr (const enum CBLAS_ORDER ORDER, const enum
+          CBLAS_UPLO UPLO, const int N, const float ALPHA, const void *
+          X, const int INCX, void * A)
+
+ -- Function: void cblas_cher2 (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const void * ALPHA, const
+          void * X, const int INCX, const void * Y, const int INCY,
+          void * A, const int LDA)
+
+ -- Function: void cblas_chpr2 (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const void * ALPHA, const
+          void * X, const int INCX, const void * Y, const int INCY,
+          void * AP)
+
+ -- Function: void cblas_zhemv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const void * ALPHA, const
+          void * A, const int LDA, const void * X, const int INCX,
+          const void * BETA, void * Y, const int INCY)
+
+ -- Function: void cblas_zhbmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const int K, const void *
+          ALPHA, const void * A, const int LDA, const void * X, const
+          int INCX, const void * BETA, void * Y, const int INCY)
+
+ -- Function: void cblas_zhpmv (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const void * ALPHA, const
+          void * AP, const void * X, const int INCX, const void * BETA,
+          void * Y, const int INCY)
+
+ -- Function: void cblas_zgeru (const enum CBLAS_ORDER ORDER, const int
+          M, const int N, const void * ALPHA, const void * X, const int
+          INCX, const void * Y, const int INCY, void * A, const int LDA)
+
+ -- Function: void cblas_zgerc (const enum CBLAS_ORDER ORDER, const int
+          M, const int N, const void * ALPHA, const void * X, const int
+          INCX, const void * Y, const int INCY, void * A, const int LDA)
+
+ -- Function: void cblas_zher (const enum CBLAS_ORDER ORDER, const enum
+          CBLAS_UPLO UPLO, const int N, const double ALPHA, const void
+          * X, const int INCX, void * A, const int LDA)
+
+ -- Function: void cblas_zhpr (const enum CBLAS_ORDER ORDER, const enum
+          CBLAS_UPLO UPLO, const int N, const double ALPHA, const void
+          * X, const int INCX, void * A)
+
+ -- Function: void cblas_zher2 (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const void * ALPHA, const
+          void * X, const int INCX, const void * Y, const int INCY,
+          void * A, const int LDA)
+
+ -- Function: void cblas_zhpr2 (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const int N, const void * ALPHA, const
+          void * X, const int INCX, const void * Y, const int INCY,
+          void * AP)
+
+\1f
+File: gsl-ref.info,  Node: Level 3 CBLAS Functions,  Next: GSL CBLAS Examples,  Prev: Level 2 CBLAS Functions,  Up: GSL CBLAS Library
+
+D.3 Level 3
+===========
+
+ -- Function: void cblas_sgemm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_TRANSPOSE TRANSA, const enum CBLAS_TRANSPOSE
+          TRANSB, const int M, const int N, const int K, const float
+          ALPHA, const float * A, const int LDA, const float * B, const
+          int LDB, const float BETA, float * C, const int LDC)
+
+ -- Function: void cblas_ssymm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_SIDE SIDE, const enum CBLAS_UPLO UPLO, const int
+          M, const int N, const float ALPHA, const float * A, const int
+          LDA, const float * B, const int LDB, const float BETA, float
+          * C, const int LDC)
+
+ -- Function: void cblas_ssyrk (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANS, const
+          int N, const int K, const float ALPHA, const float * A, const
+          int LDA, const float BETA, float * C, const int LDC)
+
+ -- Function: void cblas_ssyr2k (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANS, const
+          int N, const int K, const float ALPHA, const float * A, const
+          int LDA, const float * B, const int LDB, const float BETA,
+          float * C, const int LDC)
+
+ -- Function: void cblas_strmm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_SIDE SIDE, const enum CBLAS_UPLO UPLO, const enum
+          CBLAS_TRANSPOSE TRANSA, const enum CBLAS_DIAG DIAG, const int
+          M, const int N, const float ALPHA, const float * A, const int
+          LDA, float * B, const int LDB)
+
+ -- Function: void cblas_strsm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_SIDE SIDE, const enum CBLAS_UPLO UPLO, const enum
+          CBLAS_TRANSPOSE TRANSA, const enum CBLAS_DIAG DIAG, const int
+          M, const int N, const float ALPHA, const float * A, const int
+          LDA, float * B, const int LDB)
+
+ -- Function: void cblas_dgemm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_TRANSPOSE TRANSA, const enum CBLAS_TRANSPOSE
+          TRANSB, const int M, const int N, const int K, const double
+          ALPHA, const double * A, const int LDA, const double * B,
+          const int LDB, const double BETA, double * C, const int LDC)
+
+ -- Function: void cblas_dsymm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_SIDE SIDE, const enum CBLAS_UPLO UPLO, const int
+          M, const int N, const double ALPHA, const double * A, const
+          int LDA, const double * B, const int LDB, const double BETA,
+          double * C, const int LDC)
+
+ -- Function: void cblas_dsyrk (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANS, const
+          int N, const int K, const double ALPHA, const double * A,
+          const int LDA, const double BETA, double * C, const int LDC)
+
+ -- Function: void cblas_dsyr2k (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANS, const
+          int N, const int K, const double ALPHA, const double * A,
+          const int LDA, const double * B, const int LDB, const double
+          BETA, double * C, const int LDC)
+
+ -- Function: void cblas_dtrmm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_SIDE SIDE, const enum CBLAS_UPLO UPLO, const enum
+          CBLAS_TRANSPOSE TRANSA, const enum CBLAS_DIAG DIAG, const int
+          M, const int N, const double ALPHA, const double * A, const
+          int LDA, double * B, const int LDB)
+
+ -- Function: void cblas_dtrsm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_SIDE SIDE, const enum CBLAS_UPLO UPLO, const enum
+          CBLAS_TRANSPOSE TRANSA, const enum CBLAS_DIAG DIAG, const int
+          M, const int N, const double ALPHA, const double * A, const
+          int LDA, double * B, const int LDB)
+
+ -- Function: void cblas_cgemm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_TRANSPOSE TRANSA, const enum CBLAS_TRANSPOSE
+          TRANSB, const int M, const int N, const int K, const void *
+          ALPHA, const void * A, const int LDA, const void * B, const
+          int LDB, const void * BETA, void * C, const int LDC)
+
+ -- Function: void cblas_csymm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_SIDE SIDE, const enum CBLAS_UPLO UPLO, const int
+          M, const int N, const void * ALPHA, const void * A, const int
+          LDA, const void * B, const int LDB, const void * BETA, void *
+          C, const int LDC)
+
+ -- Function: void cblas_csyrk (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANS, const
+          int N, const int K, const void * ALPHA, const void * A, const
+          int LDA, const void * BETA, void * C, const int LDC)
+
+ -- Function: void cblas_csyr2k (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANS, const
+          int N, const int K, const void * ALPHA, const void * A, const
+          int LDA, const void * B, const int LDB, const void * BETA,
+          void * C, const int LDC)
+
+ -- Function: void cblas_ctrmm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_SIDE SIDE, const enum CBLAS_UPLO UPLO, const enum
+          CBLAS_TRANSPOSE TRANSA, const enum CBLAS_DIAG DIAG, const int
+          M, const int N, const void * ALPHA, const void * A, const int
+          LDA, void * B, const int LDB)
+
+ -- Function: void cblas_ctrsm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_SIDE SIDE, const enum CBLAS_UPLO UPLO, const enum
+          CBLAS_TRANSPOSE TRANSA, const enum CBLAS_DIAG DIAG, const int
+          M, const int N, const void * ALPHA, const void * A, const int
+          LDA, void * B, const int LDB)
+
+ -- Function: void cblas_zgemm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_TRANSPOSE TRANSA, const enum CBLAS_TRANSPOSE
+          TRANSB, const int M, const int N, const int K, const void *
+          ALPHA, const void * A, const int LDA, const void * B, const
+          int LDB, const void * BETA, void * C, const int LDC)
+
+ -- Function: void cblas_zsymm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_SIDE SIDE, const enum CBLAS_UPLO UPLO, const int
+          M, const int N, const void * ALPHA, const void * A, const int
+          LDA, const void * B, const int LDB, const void * BETA, void *
+          C, const int LDC)
+
+ -- Function: void cblas_zsyrk (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANS, const
+          int N, const int K, const void * ALPHA, const void * A, const
+          int LDA, const void * BETA, void * C, const int LDC)
+
+ -- Function: void cblas_zsyr2k (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANS, const
+          int N, const int K, const void * ALPHA, const void * A, const
+          int LDA, const void * B, const int LDB, const void * BETA,
+          void * C, const int LDC)
+
+ -- Function: void cblas_ztrmm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_SIDE SIDE, const enum CBLAS_UPLO UPLO, const enum
+          CBLAS_TRANSPOSE TRANSA, const enum CBLAS_DIAG DIAG, const int
+          M, const int N, const void * ALPHA, const void * A, const int
+          LDA, void * B, const int LDB)
+
+ -- Function: void cblas_ztrsm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_SIDE SIDE, const enum CBLAS_UPLO UPLO, const enum
+          CBLAS_TRANSPOSE TRANSA, const enum CBLAS_DIAG DIAG, const int
+          M, const int N, const void * ALPHA, const void * A, const int
+          LDA, void * B, const int LDB)
+
+ -- Function: void cblas_chemm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_SIDE SIDE, const enum CBLAS_UPLO UPLO, const int
+          M, const int N, const void * ALPHA, const void * A, const int
+          LDA, const void * B, const int LDB, const void * BETA, void *
+          C, const int LDC)
+
+ -- Function: void cblas_cherk (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANS, const
+          int N, const int K, const float ALPHA, const void * A, const
+          int LDA, const float BETA, void * C, const int LDC)
+
+ -- Function: void cblas_cher2k (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANS, const
+          int N, const int K, const void * ALPHA, const void * A, const
+          int LDA, const void * B, const int LDB, const float BETA,
+          void * C, const int LDC)
+
+ -- Function: void cblas_zhemm (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_SIDE SIDE, const enum CBLAS_UPLO UPLO, const int
+          M, const int N, const void * ALPHA, const void * A, const int
+          LDA, const void * B, const int LDB, const void * BETA, void *
+          C, const int LDC)
+
+ -- Function: void cblas_zherk (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANS, const
+          int N, const int K, const double ALPHA, const void * A, const
+          int LDA, const double BETA, void * C, const int LDC)
+
+ -- Function: void cblas_zher2k (const enum CBLAS_ORDER ORDER, const
+          enum CBLAS_UPLO UPLO, const enum CBLAS_TRANSPOSE TRANS, const
+          int N, const int K, const void * ALPHA, const void * A, const
+          int LDA, const void * B, const int LDB, const double BETA,
+          void * C, const int LDC)
+
+ -- Function: void cblas_xerbla (int P, const char * ROUT, const char *
+          FORM, ...)
+
+\1f
+File: gsl-ref.info,  Node: GSL CBLAS Examples,  Prev: Level 3 CBLAS Functions,  Up: GSL CBLAS Library
+
+D.4 Examples
+============
+
+The following program computes the product of two matrices using the
+Level-3 BLAS function SGEMM,
+
+     [ 0.11 0.12 0.13 ]  [ 1011 1012 ]     [ 367.76 368.12 ]
+     [ 0.21 0.22 0.23 ]  [ 1021 1022 ]  =  [ 674.06 674.72 ]
+                         [ 1031 1032 ]
+
+The matrices are stored in row major order but could be stored in column
+major order if the first argument of the call to `cblas_sgemm' was
+changed to `CblasColMajor'.
+
+     #include <stdio.h>
+     #include <gsl/gsl_cblas.h>
+
+     int
+     main (void)
+     {
+       int lda = 3;
+
+       float A[] = { 0.11, 0.12, 0.13,
+                     0.21, 0.22, 0.23 };
+
+       int ldb = 2;
+
+       float B[] = { 1011, 1012,
+                     1021, 1022,
+                     1031, 1032 };
+
+       int ldc = 2;
+
+       float C[] = { 0.00, 0.00,
+                     0.00, 0.00 };
+
+       /* Compute C = A B */
+
+       cblas_sgemm (CblasRowMajor,
+                    CblasNoTrans, CblasNoTrans, 2, 2, 3,
+                    1.0, A, lda, B, ldb, 0.0, C, ldc);
+
+       printf ("[ %g, %g\n", C[0], C[1]);
+       printf ("  %g, %g ]\n", C[2], C[3]);
+
+       return 0;
+     }
+
+To compile the program use the following command line,
+
+     $ gcc -Wall demo.c -lgslcblas
+
+There is no need to link with the main library `-lgsl' in this case as
+the CBLAS library is an independent unit. Here is the output from the
+program,
+
+     $ ./a.out
+     [ 367.76, 368.12
+       674.06, 674.72 ]
+
+\1f
+File: gsl-ref.info,  Node: Free Software Needs Free Documentation,  Next: GNU General Public License,  Prev: GSL CBLAS Library,  Up: Top
+
+Free Software Needs Free Documentation
+**************************************
+
+     The following article was written by Richard Stallman, founder of
+     the GNU Project.
+
+   The biggest deficiency in the free software community today is not in
+the software--it is the lack of good free documentation that we can
+include with the free software.  Many of our most important programs do
+not come with free reference manuals and free introductory texts.
+Documentation is an essential part of any software package; when an
+important free software package does not come with a free manual and a
+free tutorial, that is a major gap.  We have many such gaps today.
+
+   Consider Perl, for instance.  The tutorial manuals that people
+normally use are non-free.  How did this come about?  Because the
+authors of those manuals published them with restrictive terms--no
+copying, no modification, source files not available--which exclude
+them from the free software world.
+
+   That wasn't the first time this sort of thing happened, and it was
+far from the last.  Many times we have heard a GNU user eagerly
+describe a manual that he is writing, his intended contribution to the
+community, only to learn that he had ruined everything by signing a
+publication contract to make it non-free.
+
+   Free documentation, like free software, is a matter of freedom, not
+price.  The problem with the non-free manual is not that publishers
+charge a price for printed copies--that in itself is fine.  (The Free
+Software Foundation sells printed copies of manuals, too.)  The problem
+is the restrictions on the use of the manual.  Free manuals are
+available in source code form, and give you permission to copy and
+modify.  Non-free manuals do not allow this.
+
+   The criteria of freedom for a free manual are roughly the same as for
+free software.  Redistribution (including the normal kinds of
+commercial redistribution) must be permitted, so that the manual can
+accompany every copy of the program, both on-line and on paper.
+
+   Permission for modification of the technical content is crucial too.
+When people modify the software, adding or changing features, if they
+are conscientious they will change the manual too--so they can provide
+accurate and clear documentation for the modified program.  A manual
+that leaves you no choice but to write a new manual to document a
+changed version of the program is not really available to our community.
+
+   Some kinds of limits on the way modification is handled are
+acceptable.  For example, requirements to preserve the original
+author's copyright notice, the distribution terms, or the list of
+authors, are ok.  It is also no problem to require modified versions to
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+not be deleted or changed are acceptable, as long as they deal with
+nontechnical topics (like this one).  These kinds of restrictions are
+acceptable because they don't obstruct the community's normal use of
+the manual.
+
+   However, it must be possible to modify all the _technical_ content
+of the manual, and then distribute the result in all the usual media,
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+replace it.
+
+   Please spread the word about this issue.  Our community continues to
+lose manuals to proprietary publishing.  If we spread the word that
+free software needs free reference manuals and free tutorials, perhaps
+the next person who wants to contribute by writing documentation will
+realize, before it is too late, that only free manuals contribute to
+the free software community.
+
+   If you are writing documentation, please insist on publishing it
+under the GNU Free Documentation License or another free documentation
+license.  Remember that this decision requires your approval--you don't
+have to let the publisher decide.  Some commercial publishers will use
+a free license if you insist, but they will not propose the option; it
+is up to you to raise the issue and say firmly that this is what you
+want.  If the publisher you are dealing with refuses, please try other
+publishers.  If you're not sure whether a proposed license is free,
+write to <licensing@gnu.org>.
+
+   You can encourage commercial publishers to sell more free, copylefted
+manuals and tutorials by buying them, and particularly by buying copies
+from the publishers that paid for their writing or for major
+improvements.  Meanwhile, try to avoid buying non-free documentation at
+all.  Check the distribution terms of a manual before you buy it, and
+insist that whoever seeks your business must respect your freedom.
+Check the history of the book, and try reward the publishers that have
+paid or pay the authors to work on it.
+
+   The Free Software Foundation maintains a list of free documentation
+published by other publishers:
+
+     `http://www.fsf.org/doc/other-free-books.html'
+
+\1f
+File: gsl-ref.info,  Node: GNU General Public License,  Next: GNU Free Documentation License,  Prev: Free Software Needs Free Documentation,  Up: Top
+
+GNU General Public License
+**************************
+
+                        Version 3, 29 June 2007
+     Copyright (C) 2007 Free Software Foundation, Inc. `http://fsf.org/'
+
+     Everyone is permitted to copy and distribute verbatim copies of this
+     license document, but changing it is not allowed.
+
+Preamble
+========
+
+The GNU General Public License is a free, copyleft license for software
+and other kinds of works.
+
+   The licenses for most software and other practical works are designed
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+
+TERMS AND CONDITIONS
+====================
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+
+     An interactive user interface displays "Appropriate Legal Notices"
+     to the extent that it includes a convenient and prominently visible
+     feature that (1) displays an appropriate copyright notice, and (2)
+     tells the user that there is no warranty for the work (except to
+     the extent that warranties are provided), that licensees may
+     convey the work under this License, and how to view a copy of this
+     License.  If the interface presents a list of user commands or
+     options, such as a menu, a prominent item in the list meets this
+     criterion.
+
+  1. Source Code.
+
+     The "source code" for a work means the preferred form of the work
+     for making modifications to it.  "Object code" means any
+     non-source form of a work.
+
+     A "Standard Interface" means an interface that either is an
+     official standard defined by a recognized standards body, or, in
+     the case of interfaces specified for a particular programming
+     language, one that is widely used among developers working in that
+     language.
+
+     The "System Libraries" of an executable work include anything,
+     other than the work as a whole, that (a) is included in the normal
+     form of packaging a Major Component, but which is not part of that
+     Major Component, and (b) serves only to enable use of the work
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+     for which an implementation is available to the public in source
+     code form.  A "Major Component", in this context, means a major
+     essential component (kernel, window system, and so on) of the
+     specific operating system (if any) on which the executable work
+     runs, or a compiler used to produce the work, or an object code
+     interpreter used to run it.
+
+     The "Corresponding Source" for a work in object code form means all
+     the source code needed to generate, install, and (for an executable
+     work) run the object code and to modify the work, including
+     scripts to control those activities.  However, it does not include
+     the work's System Libraries, or general-purpose tools or generally
+     available free programs which are used unmodified in performing
+     those activities but which are not part of the work.  For example,
+     Corresponding Source includes interface definition files
+     associated with source files for the work, and the source code for
+     shared libraries and dynamically linked subprograms that the work
+     is specifically designed to require, such as by intimate data
+     communication or control flow between those subprograms and other
+     parts of the work.
+
+     The Corresponding Source need not include anything that users can
+     regenerate automatically from other parts of the Corresponding
+     Source.
+
+     The Corresponding Source for a work in source code form is that
+     same work.
+
+  2. Basic Permissions.
+
+     All rights granted under this License are granted for the term of
+     copyright on the Program, and are irrevocable provided the stated
+     conditions are met.  This License explicitly affirms your unlimited
+     permission to run the unmodified Program.  The output from running
+     a covered work is covered by this License only if the output,
+     given its content, constitutes a covered work.  This License
+     acknowledges your rights of fair use or other equivalent, as
+     provided by copyright law.
+
+     You may make, run and propagate covered works that you do not
+     convey, without conditions so long as your license otherwise
+     remains in force.  You may convey covered works to others for the
+     sole purpose of having them make modifications exclusively for
+     you, or provide you with facilities for running those works,
+     provided that you comply with the terms of this License in
+     conveying all material for which you do not control copyright.
+     Those thus making or running the covered works for you must do so
+     exclusively on your behalf, under your direction and control, on
+     terms that prohibit them from making any copies of your
+     copyrighted material outside their relationship with you.
+
+     Conveying under any other circumstances is permitted solely under
+     the conditions stated below.  Sublicensing is not allowed; section
+     10 makes it unnecessary.
+
+  3. Protecting Users' Legal Rights From Anti-Circumvention Law.
+
+     No covered work shall be deemed part of an effective technological
+     measure under any applicable law fulfilling obligations under
+     article 11 of the WIPO copyright treaty adopted on 20 December
+     1996, or similar laws prohibiting or restricting circumvention of
+     such measures.
+
+     When you convey a covered work, you waive any legal power to forbid
+     circumvention of technological measures to the extent such
+     circumvention is effected by exercising rights under this License
+     with respect to the covered work, and you disclaim any intention
+     to limit operation or modification of the work as a means of
+     enforcing, against the work's users, your or third parties' legal
+     rights to forbid circumvention of technological measures.
+
+  4. Conveying Verbatim Copies.
+
+     You may convey verbatim copies of the Program's source code as you
+     receive it, in any medium, provided that you conspicuously and
+     appropriately publish on each copy an appropriate copyright notice;
+     keep intact all notices stating that this License and any
+     non-permissive terms added in accord with section 7 apply to the
+     code; keep intact all notices of the absence of any warranty; and
+     give all recipients a copy of this License along with the Program.
+
+     You may charge any price or no price for each copy that you convey,
+     and you may offer support or warranty protection for a fee.
+
+  5. Conveying Modified Source Versions.
+
+     You may convey a work based on the Program, or the modifications to
+     produce it from the Program, in the form of source code under the
+     terms of section 4, provided that you also meet all of these
+     conditions:
+
+       a. The work must carry prominent notices stating that you
+          modified it, and giving a relevant date.
+
+       b. The work must carry prominent notices stating that it is
+          released under this License and any conditions added under
+          section 7.  This requirement modifies the requirement in
+          section 4 to "keep intact all notices".
+
+       c. You must license the entire work, as a whole, under this
+          License to anyone who comes into possession of a copy.  This
+          License will therefore apply, along with any applicable
+          section 7 additional terms, to the whole of the work, and all
+          its parts, regardless of how they are packaged.  This License
+          gives no permission to license the work in any other way, but
+          it does not invalidate such permission if you have separately
+          received it.
+
+       d. If the work has interactive user interfaces, each must display
+          Appropriate Legal Notices; however, if the Program has
+          interactive interfaces that do not display Appropriate Legal
+          Notices, your work need not make them do so.
+
+     A compilation of a covered work with other separate and independent
+     works, which are not by their nature extensions of the covered
+     work, and which are not combined with it such as to form a larger
+     program, in or on a volume of a storage or distribution medium, is
+     called an "aggregate" if the compilation and its resulting
+     copyright are not used to limit the access or legal rights of the
+     compilation's users beyond what the individual works permit.
+     Inclusion of a covered work in an aggregate does not cause this
+     License to apply to the other parts of the aggregate.
+
+  6. Conveying Non-Source Forms.
+
+     You may convey a covered work in object code form under the terms
+     of sections 4 and 5, provided that you also convey the
+     machine-readable Corresponding Source under the terms of this
+     License, in one of these ways:
+
+       a. Convey the object code in, or embodied in, a physical product
+          (including a physical distribution medium), accompanied by the
+          Corresponding Source fixed on a durable physical medium
+          customarily used for software interchange.
+
+       b. Convey the object code in, or embodied in, a physical product
+          (including a physical distribution medium), accompanied by a
+          written offer, valid for at least three years and valid for
+          as long as you offer spare parts or customer support for that
+          product model, to give anyone who possesses the object code
+          either (1) a copy of the Corresponding Source for all the
+          software in the product that is covered by this License, on a
+          durable physical medium customarily used for software
+          interchange, for a price no more than your reasonable cost of
+          physically performing this conveying of source, or (2) access
+          to copy the Corresponding Source from a network server at no
+          charge.
+
+       c. Convey individual copies of the object code with a copy of
+          the written offer to provide the Corresponding Source.  This
+          alternative is allowed only occasionally and noncommercially,
+          and only if you received the object code with such an offer,
+          in accord with subsection 6b.
+
+       d. Convey the object code by offering access from a designated
+          place (gratis or for a charge), and offer equivalent access
+          to the Corresponding Source in the same way through the same
+          place at no further charge.  You need not require recipients
+          to copy the Corresponding Source along with the object code.
+          If the place to copy the object code is a network server, the
+          Corresponding Source may be on a different server (operated
+          by you or a third party) that supports equivalent copying
+          facilities, provided you maintain clear directions next to
+          the object code saying where to find the Corresponding Source.
+          Regardless of what server hosts the Corresponding Source, you
+          remain obligated to ensure that it is available for as long
+          as needed to satisfy these requirements.
+
+       e. Convey the object code using peer-to-peer transmission,
+          provided you inform other peers where the object code and
+          Corresponding Source of the work are being offered to the
+          general public at no charge under subsection 6d.
+
+
+     A separable portion of the object code, whose source code is
+     excluded from the Corresponding Source as a System Library, need
+     not be included in conveying the object code work.
+
+     A "User Product" is either (1) a "consumer product", which means
+     any tangible personal property which is normally used for personal,
+     family, or household purposes, or (2) anything designed or sold for
+     incorporation into a dwelling.  In determining whether a product
+     is a consumer product, doubtful cases shall be resolved in favor of
+     coverage.  For a particular product received by a particular user,
+     "normally used" refers to a typical or common use of that class of
+     product, regardless of the status of the particular user or of the
+     way in which the particular user actually uses, or expects or is
+     expected to use, the product.  A product is a consumer product
+     regardless of whether the product has substantial commercial,
+     industrial or non-consumer uses, unless such uses represent the
+     only significant mode of use of the product.
+
+     "Installation Information" for a User Product means any methods,
+     procedures, authorization keys, or other information required to
+     install and execute modified versions of a covered work in that
+     User Product from a modified version of its Corresponding Source.
+     The information must suffice to ensure that the continued
+     functioning of the modified object code is in no case prevented or
+     interfered with solely because modification has been made.
+
+     If you convey an object code work under this section in, or with,
+     or specifically for use in, a User Product, and the conveying
+     occurs as part of a transaction in which the right of possession
+     and use of the User Product is transferred to the recipient in
+     perpetuity or for a fixed term (regardless of how the transaction
+     is characterized), the Corresponding Source conveyed under this
+     section must be accompanied by the Installation Information.  But
+     this requirement does not apply if neither you nor any third party
+     retains the ability to install modified object code on the User
+     Product (for example, the work has been installed in ROM).
+
+     The requirement to provide Installation Information does not
+     include a requirement to continue to provide support service,
+     warranty, or updates for a work that has been modified or
+     installed by the recipient, or for the User Product in which it
+     has been modified or installed.  Access to a network may be denied
+     when the modification itself materially and adversely affects the
+     operation of the network or violates the rules and protocols for
+     communication across the network.
+
+     Corresponding Source conveyed, and Installation Information
+     provided, in accord with this section must be in a format that is
+     publicly documented (and with an implementation available to the
+     public in source code form), and must require no special password
+     or key for unpacking, reading or copying.
+
+  7. Additional Terms.
+
+     "Additional permissions" are terms that supplement the terms of
+     this License by making exceptions from one or more of its
+     conditions.  Additional permissions that are applicable to the
+     entire Program shall be treated as though they were included in
+     this License, to the extent that they are valid under applicable
+     law.  If additional permissions apply only to part of the Program,
+     that part may be used separately under those permissions, but the
+     entire Program remains governed by this License without regard to
+     the additional permissions.
+
+     When you convey a copy of a covered work, you may at your option
+     remove any additional permissions from that copy, or from any part
+     of it.  (Additional permissions may be written to require their own
+     removal in certain cases when you modify the work.)  You may place
+     additional permissions on material, added by you to a covered work,
+     for which you have or can give appropriate copyright permission.
+
+     Notwithstanding any other provision of this License, for material
+     you add to a covered work, you may (if authorized by the copyright
+     holders of that material) supplement the terms of this License
+     with terms:
+
+       a. Disclaiming warranty or limiting liability differently from
+          the terms of sections 15 and 16 of this License; or
+
+       b. Requiring preservation of specified reasonable legal notices
+          or author attributions in that material or in the Appropriate
+          Legal Notices displayed by works containing it; or
+
+       c. Prohibiting misrepresentation of the origin of that material,
+          or requiring that modified versions of such material be
+          marked in reasonable ways as different from the original
+          version; or
+
+       d. Limiting the use for publicity purposes of names of licensors
+          or authors of the material; or
+
+       e. Declining to grant rights under trademark law for use of some
+          trade names, trademarks, or service marks; or
+
+       f. Requiring indemnification of licensors and authors of that
+          material by anyone who conveys the material (or modified
+          versions of it) with contractual assumptions of liability to
+          the recipient, for any liability that these contractual
+          assumptions directly impose on those licensors and authors.
+
+     All other non-permissive additional terms are considered "further
+     restrictions" within the meaning of section 10.  If the Program as
+     you received it, or any part of it, contains a notice stating that
+     it is governed by this License along with a term that is a further
+     restriction, you may remove that term.  If a license document
+     contains a further restriction but permits relicensing or
+     conveying under this License, you may add to a covered work
+     material governed by the terms of that license document, provided
+     that the further restriction does not survive such relicensing or
+     conveying.
+
+     If you add terms to a covered work in accord with this section, you
+     must place, in the relevant source files, a statement of the
+     additional terms that apply to those files, or a notice indicating
+     where to find the applicable terms.
+
+     Additional terms, permissive or non-permissive, may be stated in
+     the form of a separately written license, or stated as exceptions;
+     the above requirements apply either way.
+
+  8. Termination.
+
+     You may not propagate or modify a covered work except as expressly
+     provided under this License.  Any attempt otherwise to propagate or
+     modify it is void, and will automatically terminate your rights
+     under this License (including any patent licenses granted under
+     the third paragraph of section 11).
+
+     However, if you cease all violation of this License, then your
+     license from a particular copyright holder is reinstated (a)
+     provisionally, unless and until the copyright holder explicitly
+     and finally terminates your license, and (b) permanently, if the
+     copyright holder fails to notify you of the violation by some
+     reasonable means prior to 60 days after the cessation.
+
+     Moreover, your license from a particular copyright holder is
+     reinstated permanently if the copyright holder notifies you of the
+     violation by some reasonable means, this is the first time you have
+     received notice of violation of this License (for any work) from
+     that copyright holder, and you cure the violation prior to 30 days
+     after your receipt of the notice.
+
+     Termination of your rights under this section does not terminate
+     the licenses of parties who have received copies or rights from
+     you under this License.  If your rights have been terminated and
+     not permanently reinstated, you do not qualify to receive new
+     licenses for the same material under section 10.
+
+  9. Acceptance Not Required for Having Copies.
+
+     You are not required to accept this License in order to receive or
+     run a copy of the Program.  Ancillary propagation of a covered work
+     occurring solely as a consequence of using peer-to-peer
+     transmission to receive a copy likewise does not require
+     acceptance.  However, nothing other than this License grants you
+     permission to propagate or modify any covered work.  These actions
+     infringe copyright if you do not accept this License.  Therefore,
+     by modifying or propagating a covered work, you indicate your
+     acceptance of this License to do so.
+
+ 10. Automatic Licensing of Downstream Recipients.
+
+     Each time you convey a covered work, the recipient automatically
+     receives a license from the original licensors, to run, modify and
+     propagate that work, subject to this License.  You are not
+     responsible for enforcing compliance by third parties with this
+     License.
+
+     An "entity transaction" is a transaction transferring control of an
+     organization, or substantially all assets of one, or subdividing an
+     organization, or merging organizations.  If propagation of a
+     covered work results from an entity transaction, each party to that
+     transaction who receives a copy of the work also receives whatever
+     licenses to the work the party's predecessor in interest had or
+     could give under the previous paragraph, plus a right to
+     possession of the Corresponding Source of the work from the
+     predecessor in interest, if the predecessor has it or can get it
+     with reasonable efforts.
+
+     You may not impose any further restrictions on the exercise of the
+     rights granted or affirmed under this License.  For example, you
+     may not impose a license fee, royalty, or other charge for
+     exercise of rights granted under this License, and you may not
+     initiate litigation (including a cross-claim or counterclaim in a
+     lawsuit) alleging that any patent claim is infringed by making,
+     using, selling, offering for sale, or importing the Program or any
+     portion of it.
+
+ 11. Patents.
+
+     A "contributor" is a copyright holder who authorizes use under this
+     License of the Program or a work on which the Program is based.
+     The work thus licensed is called the contributor's "contributor
+     version".
+
+     A contributor's "essential patent claims" are all patent claims
+     owned or controlled by the contributor, whether already acquired or
+     hereafter acquired, that would be infringed by some manner,
+     permitted by this License, of making, using, or selling its
+     contributor version, but do not include claims that would be
+     infringed only as a consequence of further modification of the
+     contributor version.  For purposes of this definition, "control"
+     includes the right to grant patent sublicenses in a manner
+     consistent with the requirements of this License.
+
+     Each contributor grants you a non-exclusive, worldwide,
+     royalty-free patent license under the contributor's essential
+     patent claims, to make, use, sell, offer for sale, import and
+     otherwise run, modify and propagate the contents of its
+     contributor version.
+
+     In the following three paragraphs, a "patent license" is any
+     express agreement or commitment, however denominated, not to
+     enforce a patent (such as an express permission to practice a
+     patent or covenant not to sue for patent infringement).  To
+     "grant" such a patent license to a party means to make such an
+     agreement or commitment not to enforce a patent against the party.
+
+     If you convey a covered work, knowingly relying on a patent
+     license, and the Corresponding Source of the work is not available
+     for anyone to copy, free of charge and under the terms of this
+     License, through a publicly available network server or other
+     readily accessible means, then you must either (1) cause the
+     Corresponding Source to be so available, or (2) arrange to deprive
+     yourself of the benefit of the patent license for this particular
+     work, or (3) arrange, in a manner consistent with the requirements
+     of this License, to extend the patent license to downstream
+     recipients.  "Knowingly relying" means you have actual knowledge
+     that, but for the patent license, your conveying the covered work
+     in a country, or your recipient's use of the covered work in a
+     country, would infringe one or more identifiable patents in that
+     country that you have reason to believe are valid.
+
+     If, pursuant to or in connection with a single transaction or
+     arrangement, you convey, or propagate by procuring conveyance of, a
+     covered work, and grant a patent license to some of the parties
+     receiving the covered work authorizing them to use, propagate,
+     modify or convey a specific copy of the covered work, then the
+     patent license you grant is automatically extended to all
+     recipients of the covered work and works based on it.
+
+     A patent license is "discriminatory" if it does not include within
+     the scope of its coverage, prohibits the exercise of, or is
+     conditioned on the non-exercise of one or more of the rights that
+     are specifically granted under this License.  You may not convey a
+     covered work if you are a party to an arrangement with a third
+     party that is in the business of distributing software, under
+     which you make payment to the third party based on the extent of
+     your activity of conveying the work, and under which the third
+     party grants, to any of the parties who would receive the covered
+     work from you, a discriminatory patent license (a) in connection
+     with copies of the covered work conveyed by you (or copies made
+     from those copies), or (b) primarily for and in connection with
+     specific products or compilations that contain the covered work,
+     unless you entered into that arrangement, or that patent license
+     was granted, prior to 28 March 2007.
+
+     Nothing in this License shall be construed as excluding or limiting
+     any implied license or other defenses to infringement that may
+     otherwise be available to you under applicable patent law.
+
+ 12. No Surrender of Others' Freedom.
+
+     If conditions are imposed on you (whether by court order,
+     agreement or otherwise) that contradict the conditions of this
+     License, they do not excuse you from the conditions of this
+     License.  If you cannot convey a covered work so as to satisfy
+     simultaneously your obligations under this License and any other
+     pertinent obligations, then as a consequence you may not convey it
+     at all.  For example, if you agree to terms that obligate you to
+     collect a royalty for further conveying from those to whom you
+     convey the Program, the only way you could satisfy both those
+     terms and this License would be to refrain entirely from conveying
+     the Program.
+
+ 13. Use with the GNU Affero General Public License.
+
+     Notwithstanding any other provision of this License, you have
+     permission to link or combine any covered work with a work licensed
+     under version 3 of the GNU Affero General Public License into a
+     single combined work, and to convey the resulting work.  The terms
+     of this License will continue to apply to the part which is the
+     covered work, but the special requirements of the GNU Affero
+     General Public License, section 13, concerning interaction through
+     a network will apply to the combination as such.
+
+ 14. Revised Versions of this License.
+
+     The Free Software Foundation may publish revised and/or new
+     versions of the GNU General Public License from time to time.
+     Such new versions will be similar in spirit to the present
+     version, but may differ in detail to address new problems or
+     concerns.
+
+     Each version is given a distinguishing version number.  If the
+     Program specifies that a certain numbered version of the GNU
+     General Public License "or any later version" applies to it, you
+     have the option of following the terms and conditions either of
+     that numbered version or of any later version published by the
+     Free Software Foundation.  If the Program does not specify a
+     version number of the GNU General Public License, you may choose
+     any version ever published by the Free Software Foundation.
+
+     If the Program specifies that a proxy can decide which future
+     versions of the GNU General Public License can be used, that
+     proxy's public statement of acceptance of a version permanently
+     authorizes you to choose that version for the Program.
+
+     Later license versions may give you additional or different
+     permissions.  However, no additional obligations are imposed on any
+     author or copyright holder as a result of your choosing to follow a
+     later version.
+
+ 15. Disclaimer of Warranty.
+
+     THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+     APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE
+     COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS"
+     WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED,
+     INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+     MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.  THE ENTIRE
+     RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU.
+     SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL
+     NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+ 16. Limitation of Liability.
+
+     IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN
+     WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES
+     AND/OR CONVEYS THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU
+     FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR
+     CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE
+     THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA
+     BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+     PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
+     PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF
+     THE POSSIBILITY OF SUCH DAMAGES.
+
+ 17. Interpretation of Sections 15 and 16.
+
+     If the disclaimer of warranty and limitation of liability provided
+     above cannot be given local legal effect according to their terms,
+     reviewing courts shall apply local law that most closely
+     approximates an absolute waiver of all civil liability in
+     connection with the Program, unless a warranty or assumption of
+     liability accompanies a copy of the Program in return for a fee.
+
+
+END OF TERMS AND CONDITIONS
+===========================
+
+How to Apply These Terms to Your New Programs
+=============================================
+
+If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these
+terms.
+
+   To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least the
+"copyright" line and a pointer to where the full notice is found.
+
+     one line to give the program's name and a brief idea
+     of whAT IT DOES.
+     Copyright (C) YEAR NAME OF AUTHOR
+
+     This program is free software: you can redistribute it and/or modify
+     it under the terms of the GNU General Public License as published by
+     the Free Software Foundation, either version 3 of the License, or (at
+     your option) any later version.
+
+     This program is distributed in the hope that it will be useful, but
+     WITHOUT ANY WARRANTY; without even the implied warranty of
+     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+     General Public License for more details.
+
+     You should have received a copy of the GNU General Public License
+     along with this program.  If not, see `http://www.gnu.org/licenses/'.
+
+   Also add information on how to contact you by electronic and paper
+mail.
+
+   If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+     PROGRAM Copyright (C) YEAR NAME OF AUTHOR
+     This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+     This is free software, and you are welcome to redistribute it
+     under certain conditions; type `show c' for details.
+
+   The hypothetical commands `show w' and `show c' should show the
+appropriate parts of the General Public License.  Of course, your
+program's commands might be different; for a GUI interface, you would
+use an "about box".
+
+   You should also get your employer (if you work as a programmer) or
+school, if any, to sign a "copyright disclaimer" for the program, if
+necessary.  For more information on this, and how to apply and follow
+the GNU GPL, see `http://www.gnu.org/licenses/'.
+
+   The GNU General Public License does not permit incorporating your
+program into proprietary programs.  If your program is a subroutine
+library, you may consider it more useful to permit linking proprietary
+applications with the library.  If this is what you want to do, use the
+GNU Lesser General Public License instead of this License.  But first,
+please read `http://www.gnu.org/philosophy/why-not-lgpl.html'.
+
+\1f
+File: gsl-ref.info,  Node: GNU Free Documentation License,  Next: Function Index,  Prev: GNU General Public License,  Up: Top
+
+GNU Free Documentation License
+******************************
+
+                     Version 1.3, 3 November 2008
+     Copyright (C) 2000, 2001, 2002, 2007, 2008 Free Software Foundation, Inc.
+     `http://fsf.org/'
+
+     Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is
+     not allowed.
+
+  0. PREAMBLE
+
+     The purpose of this License is to make a manual, textbook, or other
+     functional and useful document "free" in the sense of freedom: to
+     assure everyone the effective freedom to copy and redistribute it,
+     with or without modifying it, either commercially or
+     noncommercially.  Secondarily, this License preserves for the
+     author and publisher a way to get credit for their work, while not
+     being considered responsible for modifications made by others.
+
+     This License is a kind of "copyleft", which means that derivative
+     works of the document must themselves be free in the same sense.
+     It complements the GNU General Public License, which is a copyleft
+     license designed for free software.
+
+     We have designed this License in order to use it for manuals for
+     free software, because free software needs free documentation: a
+     free program should come with manuals providing the same freedoms
+     that the software does.  But this License is not limited to
+     software manuals; it can be used for any textual work, regardless
+     of subject matter or whether it is published as a printed book.
+     We recommend this License principally for works whose purpose is
+     instruction or reference.
+
+  1. APPLICABILITY AND DEFINITIONS
+
+     This License applies to any manual or other work, in any medium,
+     that contains a notice placed by the copyright holder saying it
+     can be distributed under the terms of this License.  Such a notice
+     grants a world-wide, royalty-free license, unlimited in duration,
+     to use that work under the conditions stated herein.  The
+     "Document", below, refers to any such manual or work.  Any member
+     of the public is a licensee, and is addressed as "you".  You
+     accept the license if you copy, modify or distribute the work in a
+     way requiring permission under copyright law.
+
+     A "Modified Version" of the Document means any work containing the
+     Document or a portion of it, either copied verbatim, or with
+     modifications and/or translated into another language.
+
+     A "Secondary Section" is a named appendix or a front-matter section
+     of the Document that deals exclusively with the relationship of the
+     publishers or authors of the Document to the Document's overall
+     subject (or to related matters) and contains nothing that could
+     fall directly within that overall subject.  (Thus, if the Document
+     is in part a textbook of mathematics, a Secondary Section may not
+     explain any mathematics.)  The relationship could be a matter of
+     historical connection with the subject or with related matters, or
+     of legal, commercial, philosophical, ethical or political position
+     regarding them.
+
+     The "Invariant Sections" are certain Secondary Sections whose
+     titles are designated, as being those of Invariant Sections, in
+     the notice that says that the Document is released under this
+     License.  If a section does not fit the above definition of
+     Secondary then it is not allowed to be designated as Invariant.
+     The Document may contain zero Invariant Sections.  If the Document
+     does not identify any Invariant Sections then there are none.
+
+     The "Cover Texts" are certain short passages of text that are
+     listed, as Front-Cover Texts or Back-Cover Texts, in the notice
+     that says that the Document is released under this License.  A
+     Front-Cover Text may be at most 5 words, and a Back-Cover Text may
+     be at most 25 words.
+
+     A "Transparent" copy of the Document means a machine-readable copy,
+     represented in a format whose specification is available to the
+     general public, that is suitable for revising the document
+     straightforwardly with generic text editors or (for images
+     composed of pixels) generic paint programs or (for drawings) some
+     widely available drawing editor, and that is suitable for input to
+     text formatters or for automatic translation to a variety of
+     formats suitable for input to text formatters.  A copy made in an
+     otherwise Transparent file format whose markup, or absence of
+     markup, has been arranged to thwart or discourage subsequent
+     modification by readers is not Transparent.  An image format is
+     not Transparent if used for any substantial amount of text.  A
+     copy that is not "Transparent" is called "Opaque".
+
+     Examples of suitable formats for Transparent copies include plain
+     ASCII without markup, Texinfo input format, LaTeX input format,
+     SGML or XML using a publicly available DTD, and
+     standard-conforming simple HTML, PostScript or PDF designed for
+     human modification.  Examples of transparent image formats include
+     PNG, XCF and JPG.  Opaque formats include proprietary formats that
+     can be read and edited only by proprietary word processors, SGML or
+     XML for which the DTD and/or processing tools are not generally
+     available, and the machine-generated HTML, PostScript or PDF
+     produced by some word processors for output purposes only.
+
+     The "Title Page" means, for a printed book, the title page itself,
+     plus such following pages as are needed to hold, legibly, the
+     material this License requires to appear in the title page.  For
+     works in formats which do not have any title page as such, "Title
+     Page" means the text near the most prominent appearance of the
+     work's title, preceding the beginning of the body of the text.
+
+     The "publisher" means any person or entity that distributes copies
+     of the Document to the public.
+
+     A section "Entitled XYZ" means a named subunit of the Document
+     whose title either is precisely XYZ or contains XYZ in parentheses
+     following text that translates XYZ in another language.  (Here XYZ
+     stands for a specific section name mentioned below, such as
+     "Acknowledgements", "Dedications", "Endorsements", or "History".)
+     To "Preserve the Title" of such a section when you modify the
+     Document means that it remains a section "Entitled XYZ" according
+     to this definition.
+
+     The Document may include Warranty Disclaimers next to the notice
+     which states that this License applies to the Document.  These
+     Warranty Disclaimers are considered to be included by reference in
+     this License, but only as regards disclaiming warranties: any other
+     implication that these Warranty Disclaimers may have is void and
+     has no effect on the meaning of this License.
+
+  2. VERBATIM COPYING
+
+     You may copy and distribute the Document in any medium, either
+     commercially or noncommercially, provided that this License, the
+     copyright notices, and the license notice saying this License
+     applies to the Document are reproduced in all copies, and that you
+     add no other conditions whatsoever to those of this License.  You
+     may not use technical measures to obstruct or control the reading
+     or further copying of the copies you make or distribute.  However,
+     you may accept compensation in exchange for copies.  If you
+     distribute a large enough number of copies you must also follow
+     the conditions in section 3.
+
+     You may also lend copies, under the same conditions stated above,
+     and you may publicly display copies.
+
+  3. COPYING IN QUANTITY
+
+     If you publish printed copies (or copies in media that commonly
+     have printed covers) of the Document, numbering more than 100, and
+     the Document's license notice requires Cover Texts, you must
+     enclose the copies in covers that carry, clearly and legibly, all
+     these Cover Texts: Front-Cover Texts on the front cover, and
+     Back-Cover Texts on the back cover.  Both covers must also clearly
+     and legibly identify you as the publisher of these copies.  The
+     front cover must present the full title with all words of the
+     title equally prominent and visible.  You may add other material
+     on the covers in addition.  Copying with changes limited to the
+     covers, as long as they preserve the title of the Document and
+     satisfy these conditions, can be treated as verbatim copying in
+     other respects.
+
+     If the required texts for either cover are too voluminous to fit
+     legibly, you should put the first ones listed (as many as fit
+     reasonably) on the actual cover, and continue the rest onto
+     adjacent pages.
+
+     If you publish or distribute Opaque copies of the Document
+     numbering more than 100, you must either include a
+     machine-readable Transparent copy along with each Opaque copy, or
+     state in or with each Opaque copy a computer-network location from
+     which the general network-using public has access to download
+     using public-standard network protocols a complete Transparent
+     copy of the Document, free of added material.  If you use the
+     latter option, you must take reasonably prudent steps, when you
+     begin distribution of Opaque copies in quantity, to ensure that
+     this Transparent copy will remain thus accessible at the stated
+     location until at least one year after the last time you
+     distribute an Opaque copy (directly or through your agents or
+     retailers) of that edition to the public.
+
+     It is requested, but not required, that you contact the authors of
+     the Document well before redistributing any large number of
+     copies, to give them a chance to provide you with an updated
+     version of the Document.
+
+  4. MODIFICATIONS
+
+     You may copy and distribute a Modified Version of the Document
+     under the conditions of sections 2 and 3 above, provided that you
+     release the Modified Version under precisely this License, with
+     the Modified Version filling the role of the Document, thus
+     licensing distribution and modification of the Modified Version to
+     whoever possesses a copy of it.  In addition, you must do these
+     things in the Modified Version:
+
+       A. Use in the Title Page (and on the covers, if any) a title
+          distinct from that of the Document, and from those of
+          previous versions (which should, if there were any, be listed
+          in the History section of the Document).  You may use the
+          same title as a previous version if the original publisher of
+          that version gives permission.
+
+       B. List on the Title Page, as authors, one or more persons or
+          entities responsible for authorship of the modifications in
+          the Modified Version, together with at least five of the
+          principal authors of the Document (all of its principal
+          authors, if it has fewer than five), unless they release you
+          from this requirement.
+
+       C. State on the Title page the name of the publisher of the
+          Modified Version, as the publisher.
+
+       D. Preserve all the copyright notices of the Document.
+
+       E. Add an appropriate copyright notice for your modifications
+          adjacent to the other copyright notices.
+
+       F. Include, immediately after the copyright notices, a license
+          notice giving the public permission to use the Modified
+          Version under the terms of this License, in the form shown in
+          the Addendum below.
+
+       G. Preserve in that license notice the full lists of Invariant
+          Sections and required Cover Texts given in the Document's
+          license notice.
+
+       H. Include an unaltered copy of this License.
+
+       I. Preserve the section Entitled "History", Preserve its Title,
+          and add to it an item stating at least the title, year, new
+          authors, and publisher of the Modified Version as given on
+          the Title Page.  If there is no section Entitled "History" in
+          the Document, create one stating the title, year, authors,
+          and publisher of the Document as given on its Title Page,
+          then add an item describing the Modified Version as stated in
+          the previous sentence.
+
+       J. Preserve the network location, if any, given in the Document
+          for public access to a Transparent copy of the Document, and
+          likewise the network locations given in the Document for
+          previous versions it was based on.  These may be placed in
+          the "History" section.  You may omit a network location for a
+          work that was published at least four years before the
+          Document itself, or if the original publisher of the version
+          it refers to gives permission.
+
+       K. For any section Entitled "Acknowledgements" or "Dedications",
+          Preserve the Title of the section, and preserve in the
+          section all the substance and tone of each of the contributor
+          acknowledgements and/or dedications given therein.
+
+       L. Preserve all the Invariant Sections of the Document,
+          unaltered in their text and in their titles.  Section numbers
+          or the equivalent are not considered part of the section
+          titles.
+
+       M. Delete any section Entitled "Endorsements".  Such a section
+          may not be included in the Modified Version.
+
+       N. Do not retitle any existing section to be Entitled
+          "Endorsements" or to conflict in title with any Invariant
+          Section.
+
+       O. Preserve any Warranty Disclaimers.
+
+     If the Modified Version includes new front-matter sections or
+     appendices that qualify as Secondary Sections and contain no
+     material copied from the Document, you may at your option
+     designate some or all of these sections as invariant.  To do this,
+     add their titles to the list of Invariant Sections in the Modified
+     Version's license notice.  These titles must be distinct from any
+     other section titles.
+
+     You may add a section Entitled "Endorsements", provided it contains
+     nothing but endorsements of your Modified Version by various
+     parties--for example, statements of peer review or that the text
+     has been approved by an organization as the authoritative
+     definition of a standard.
+
+     You may add a passage of up to five words as a Front-Cover Text,
+     and a passage of up to 25 words as a Back-Cover Text, to the end
+     of the list of Cover Texts in the Modified Version.  Only one
+     passage of Front-Cover Text and one of Back-Cover Text may be
+     added by (or through arrangements made by) any one entity.  If the
+     Document already includes a cover text for the same cover,
+     previously added by you or by arrangement made by the same entity
+     you are acting on behalf of, you may not add another; but you may
+     replace the old one, on explicit permission from the previous
+     publisher that added the old one.
+
+     The author(s) and publisher(s) of the Document do not by this
+     License give permission to use their names for publicity for or to
+     assert or imply endorsement of any Modified Version.
+
+  5. COMBINING DOCUMENTS
+
+     You may combine the Document with other documents released under
+     this License, under the terms defined in section 4 above for
+     modified versions, provided that you include in the combination
+     all of the Invariant Sections of all of the original documents,
+     unmodified, and list them all as Invariant Sections of your
+     combined work in its license notice, and that you preserve all
+     their Warranty Disclaimers.
+
+     The combined work need only contain one copy of this License, and
+     multiple identical Invariant Sections may be replaced with a single
+     copy.  If there are multiple Invariant Sections with the same name
+     but different contents, make the title of each such section unique
+     by adding at the end of it, in parentheses, the name of the
+     original author or publisher of that section if known, or else a
+     unique number.  Make the same adjustment to the section titles in
+     the list of Invariant Sections in the license notice of the
+     combined work.
+
+     In the combination, you must combine any sections Entitled
+     "History" in the various original documents, forming one section
+     Entitled "History"; likewise combine any sections Entitled
+     "Acknowledgements", and any sections Entitled "Dedications".  You
+     must delete all sections Entitled "Endorsements."
+
+  6. COLLECTIONS OF DOCUMENTS
+
+     You may make a collection consisting of the Document and other
+     documents released under this License, and replace the individual
+     copies of this License in the various documents with a single copy
+     that is included in the collection, provided that you follow the
+     rules of this License for verbatim copying of each of the
+     documents in all other respects.
+
+     You may extract a single document from such a collection, and
+     distribute it individually under this License, provided you insert
+     a copy of this License into the extracted document, and follow
+     this License in all other respects regarding verbatim copying of
+     that document.
+
+  7. AGGREGATION WITH INDEPENDENT WORKS
+
+     A compilation of the Document or its derivatives with other
+     separate and independent documents or works, in or on a volume of
+     a storage or distribution medium, is called an "aggregate" if the
+     copyright resulting from the compilation is not used to limit the
+     legal rights of the compilation's users beyond what the individual
+     works permit.  When the Document is included in an aggregate, this
+     License does not apply to the other works in the aggregate which
+     are not themselves derivative works of the Document.
+
+     If the Cover Text requirement of section 3 is applicable to these
+     copies of the Document, then if the Document is less than one half
+     of the entire aggregate, the Document's Cover Texts may be placed
+     on covers that bracket the Document within the aggregate, or the
+     electronic equivalent of covers if the Document is in electronic
+     form.  Otherwise they must appear on printed covers that bracket
+     the whole aggregate.
+
+  8. TRANSLATION
+
+     Translation is considered a kind of modification, so you may
+     distribute translations of the Document under the terms of section
+     4.  Replacing Invariant Sections with translations requires special
+     permission from their copyright holders, but you may include
+     translations of some or all Invariant Sections in addition to the
+     original versions of these Invariant Sections.  You may include a
+     translation of this License, and all the license notices in the
+     Document, and any Warranty Disclaimers, provided that you also
+     include the original English version of this License and the
+     original versions of those notices and disclaimers.  In case of a
+     disagreement between the translation and the original version of
+     this License or a notice or disclaimer, the original version will
+     prevail.
+
+     If a section in the Document is Entitled "Acknowledgements",
+     "Dedications", or "History", the requirement (section 4) to
+     Preserve its Title (section 1) will typically require changing the
+     actual title.
+
+  9. TERMINATION
+
+     You may not copy, modify, sublicense, or distribute the Document
+     except as expressly provided under this License.  Any attempt
+     otherwise to copy, modify, sublicense, or distribute it is void,
+     and will automatically terminate your rights under this License.
+
+     However, if you cease all violation of this License, then your
+     license from a particular copyright holder is reinstated (a)
+     provisionally, unless and until the copyright holder explicitly
+     and finally terminates your license, and (b) permanently, if the
+     copyright holder fails to notify you of the violation by some
+     reasonable means prior to 60 days after the cessation.
+
+     Moreover, your license from a particular copyright holder is
+     reinstated permanently if the copyright holder notifies you of the
+     violation by some reasonable means, this is the first time you have
+     received notice of violation of this License (for any work) from
+     that copyright holder, and you cure the violation prior to 30 days
+     after your receipt of the notice.
+
+     Termination of your rights under this section does not terminate
+     the licenses of parties who have received copies or rights from
+     you under this License.  If your rights have been terminated and
+     not permanently reinstated, receipt of a copy of some or all of
+     the same material does not give you any rights to use it.
+
+ 10. FUTURE REVISIONS OF THIS LICENSE
+
+     The Free Software Foundation may publish new, revised versions of
+     the GNU Free Documentation License from time to time.  Such new
+     versions will be similar in spirit to the present version, but may
+     differ in detail to address new problems or concerns.  See
+     `http://www.gnu.org/copyleft/'.
+
+     Each version of the License is given a distinguishing version
+     number.  If the Document specifies that a particular numbered
+     version of this License "or any later version" applies to it, you
+     have the option of following the terms and conditions either of
+     that specified version or of any later version that has been
+     published (not as a draft) by the Free Software Foundation.  If
+     the Document does not specify a version number of this License,
+     you may choose any version ever published (not as a draft) by the
+     Free Software Foundation.  If the Document specifies that a proxy
+     can decide which future versions of this License can be used, that
+     proxy's public statement of acceptance of a version permanently
+     authorizes you to choose that version for the Document.
+
+ 11. RELICENSING
+
+     "Massive Multiauthor Collaboration Site" (or "MMC Site") means any
+     World Wide Web server that publishes copyrightable works and also
+     provides prominent facilities for anybody to edit those works.  A
+     public wiki that anybody can edit is an example of such a server.
+     A "Massive Multiauthor Collaboration" (or "MMC") contained in the
+     site means any set of copyrightable works thus published on the MMC
+     site.
+
+     "CC-BY-SA" means the Creative Commons Attribution-Share Alike 3.0
+     license published by Creative Commons Corporation, a not-for-profit
+     corporation with a principal place of business in San Francisco,
+     California, as well as future copyleft versions of that license
+     published by that same organization.
+
+     "Incorporate" means to publish or republish a Document, in whole or
+     in part, as part of another Document.
+
+     An MMC is "eligible for relicensing" if it is licensed under this
+     License, and if all works that were first published under this
+     License somewhere other than this MMC, and subsequently
+     incorporated in whole or in part into the MMC, (1) had no cover
+     texts or invariant sections, and (2) were thus incorporated prior
+     to November 1, 2008.
+
+     The operator of an MMC Site may republish an MMC contained in the
+     site under CC-BY-SA on the same site at any time before August 1,
+     2009, provided the MMC is eligible for relicensing.
+
+
+ADDENDUM: How to use this License for your documents
+====================================================
+
+To use this License in a document you have written, include a copy of
+the License in the document and put the following copyright and license
+notices just after the title page:
+
+       Copyright (C)  YEAR  YOUR NAME.
+       Permission is granted to copy, distribute and/or modify
+       this document under the terms of the GNU Free
+       Documentation License, Version 1.3 or any later version
+       published by the Free Software Foundation; with no
+       Invariant Sections, no Front-Cover Texts, and no
+       Back-Cover Texts.  A copy of the license is included in
+       the section entitled ``GNU Free Documentation License''.
+
+   If you have Invariant Sections, Front-Cover Texts and Back-Cover
+Texts, replace the "with...Texts." line with this:
+
+       with the Invariant Sections being LIST THEIR
+       TITLES, with the Front-Cover Texts being LIST, and
+       with the Back-Cover Texts being LIST.
+
+   If you have Invariant Sections without Cover Texts, or some other
+combination of the three, merge those two alternatives to suit the
+situation.
+
+   If your document contains nontrivial examples of program code, we
+recommend releasing these examples in parallel under your choice of
+free software license, such as the GNU General Public License, to
+permit their use in free software.
+

diff --git a/util/X86LINUX64/share/info/gsl-ref.info-5 b/util/X86LINUX64/share/info/gsl-ref.info-5
new file mode 100644 (file)
index 0000000..611a508
Binary files /dev/null and b/util/X86LINUX64/share/info/gsl-ref.info-5 differ

diff --git a/util/X86LINUX64/share/info/gsl-ref.info-6 b/util/X86LINUX64/share/info/gsl-ref.info-6
new file mode 100644 (file)
index 0000000..6c8d402
Binary files /dev/null and b/util/X86LINUX64/share/info/gsl-ref.info-6 differ

diff --git a/util/X86LINUX64/share/man/man1/fftw-wisdom-to-conf.1 b/util/X86LINUX64/share/man/man1/fftw-wisdom-to-conf.1
index 8a0f6ea..15381fc 100644 (file)
--- a/util/X86LINUX64/share/man/man1/fftw-wisdom-to-conf.1
+++ b/util/X86LINUX64/share/man/man1/fftw-wisdom-to-conf.1
@@ -1,6 +1,6 @@
 .\" 
-.\" Copyright (c) 2003, 2007-8 Matteo Frigo
-.\" Copyright (c) 2003, 2007-8 Massachusetts Institute of Technology
+.\" Copyright (c) 2003, 2007-11 Matteo Frigo
+.\" Copyright (c) 2003, 2007-11 Massachusetts Institute of Technology
 .\" 
 .\" This program is free software; you can redistribute it and/or modify
 .\" it under the terms of the GNU General Public License as published by
@@ -14,7 +14,7 @@
 .\" 
 .\" You should have received a copy of the GNU General Public License
 .\" along with this program; if not, write to the Free Software
-.\" Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+.\" Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA
 .\"
 .TH FFTW-WISDOM-TO-CONF 1 "February, 2003" "fftw" "fftw"
 .SH NAME
@@ -84,8 +84,8 @@ Send bug reports to fftw@fftw.org.
 .SH AUTHORS
 Written by Steven G. Johnson and Matteo Frigo.
 
-Copyright (c) 2003, 2007-8 Matteo Frigo
+Copyright (c) 2003, 2007-11 Matteo Frigo
 .br
-Copyright (c) 2003, 2007-8 Massachusetts Institute of Technology
+Copyright (c) 2003, 2007-11 Massachusetts Institute of Technology
 .SH "SEE ALSO"
 fftw-wisdom(1)

diff --git a/util/X86LINUX64/share/man/man1/fftwf-wisdom.1 b/util/X86LINUX64/share/man/man1/fftwf-wisdom.1
index 261d8a7..b28f94e 100644 (file)
--- a/util/X86LINUX64/share/man/man1/fftwf-wisdom.1
+++ b/util/X86LINUX64/share/man/man1/fftwf-wisdom.1
@@ -1,6 +1,6 @@
 .\" 
-.\" Copyright (c) 2003, 2007-8 Matteo Frigo
-.\" Copyright (c) 2003, 2007-8 Massachusetts Institute of Technology
+.\" Copyright (c) 2003, 2007-11 Matteo Frigo
+.\" Copyright (c) 2003, 2007-11 Massachusetts Institute of Technology
 .\" 
 .\" This program is free software; you can redistribute it and/or modify
 .\" it under the terms of the GNU General Public License as published by
@@ -14,7 +14,7 @@
 .\" 
 .\" You should have received a copy of the GNU General Public License
 .\" along with this program; if not, write to the Free Software
-.\" Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+.\" Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA
 .\"
 .TH FFTW-WISDOM 1 "February, 2003" "fftw" "fftw"
 .SH NAME
@@ -183,8 +183,8 @@ Send bug reports to fftw@fftw.org.
 .SH AUTHORS
 Written by Steven G. Johnson and Matteo Frigo.
 
-Copyright (c) 2003, 2007-8 Matteo Frigo
+Copyright (c) 2003, 2007-11 Matteo Frigo
 .br
-Copyright (c) 2003, 2007-8 Massachusetts Institute of Technology
+Copyright (c) 2003, 2007-11 Massachusetts Institute of Technology
 .SH "SEE ALSO"
 fftw-wisdom-to-conf(1)

diff --git a/util/X86LINUX64/share/man/man1/gsl-config.1 b/util/X86LINUX64/share/man/man1/gsl-config.1
new file mode 100644 (file)
index 0000000..2a74487
--- /dev/null
+++ b/util/X86LINUX64/share/man/man1/gsl-config.1
@@ -0,0 +1,41 @@
+.TH GSL 1 "22 May 2001"
+.SH NAME
+gsl-config - script to get version number and compiler flags of the installed GSL library
+.SH SYNOPSIS
+.B gsl-config
+[\-\-prefix]  [\-\-version] [\-\-libs] [\-\-libs\-without\-cblas] [\-\-cflags]
+.SH DESCRIPTION
+.PP
+\fIgsl-config\fP is a tool that is used to configure to determine
+the compiler and linker flags that should be used to compile
+and link programs that use \fIGSL\fP. It is also used internally
+to the .m4 macros for GNU autoconf that are included with \fIGSL\fP.
+.
+.SH OPTIONS
+\fIgsl-config\fP accepts the following options:
+.TP 8
+.B  \-\-version
+Print the currently installed version of \fIGSL\fP on the standard output.
+.TP 8
+.B  \-\-libs
+Print the linker flags that are necessary to link a \fIGSL\fP program, with cblas
+.TP 8
+.B  \-\-libs\-without\-cblas
+Print the linker flags that are necessary to link a \fIGSL\fP program, without cblas
+.TP 8
+.B  \-\-cflags
+Print the compiler flags that are necessary to compile a \fIGSL\fP program.
+.TP 8
+.B  \-\-prefix
+Show the GSL installation prefix.
+.SH SEE ALSO
+.BR gtk-config (1),
+.BR gnome-config (1)
+.SH COPYRIGHT
+Copyright \(co  2001 Christopher R. Gabriel
+
+Permission to use, copy, modify, and distribute this software and its
+documentation for any purpose and without fee is hereby granted,
+provided that the above copyright notice appear in all copies and that
+both that copyright notice and this permission notice appear in
+supporting documentation.

diff --git a/util/X86LINUX64/share/man/man1/gsl-histogram.1 b/util/X86LINUX64/share/man/man1/gsl-histogram.1
new file mode 100644 (file)
index 0000000..66f9b5a
--- /dev/null
+++ b/util/X86LINUX64/share/man/man1/gsl-histogram.1
@@ -0,0 +1,42 @@
+.\" Man page contributed by Dirk Eddelbuettel <edd@debian.org>
+.\" and released under the GNU General Public License
+.TH GSL-HISTOGRAM 1 "" GNU
+.SH NAME
+gsl-histogram - compute histogram of data on stdin
+.SH SYNOPSYS
+.B gsl-histogram xmin xmax [n]
+.SH DESCRIPTION
+.B gsl-histogram 
+is a demonstration program for the GNU Scientific Library.
+It takes three arguments, specifying the upper and lower bounds of the
+histogram and the number of bins.  It then reads numbers from `stdin',
+one line at a time, and adds them to the histogram.  When there is no
+more data to read it prints out the accumulated histogram using
+gsl_histogram_fprintf.  If n is unspecified then bins of integer width
+are used.
+.SH EXAMPLE
+Here is an example.  We generate 10000 random samples from a Cauchy
+distribution with a width of 30 and histogram them over the range -100 to
+100, using 200 bins.
+ 
+     gsl-randist 0 10000 cauchy 30 | gsl-histogram -100 100 200 > histogram.dat
+ 
+A plot of the resulting histogram will show the familiar shape of the
+Cauchy distribution with fluctuations caused by the finite sample
+size.
+
+     awk '{print $1, $3 ; print $2, $3}' histogram.dat | graph -T X
+
+.SH SEE ALSO
+.BR gsl(3) ,
+.BR gsl-randist(1) .
+
+.SH AUTHOR
+.B gsl-histogram 
+was written by Brian Gough.
+Copyright 1996-2000; for copying conditions see the GNU General
+Public Licence. 
+
+This manual page was added by the Dirk Eddelbuettel
+<edd@debian.org>, the Debian GNU/Linux maintainer for
+.BR GSL .

diff --git a/util/X86LINUX64/share/man/man1/gsl-randist.1 b/util/X86LINUX64/share/man/man1/gsl-randist.1
new file mode 100644 (file)
index 0000000..4a06169
--- /dev/null
+++ b/util/X86LINUX64/share/man/man1/gsl-randist.1
@@ -0,0 +1,38 @@
+.\" Man page contributed by Dirk Eddelbuettel <edd@debian.org>
+.\" and released under the GNU General Public License
+.TH GSL-RANDIST 1 "" GNU
+.SH NAME
+gsl-randist - generate random samples from various distributions
+.SH SYNOPSYS
+.B gsl-randist seed n DIST param1 param2 [..]
+.SH DESCRIPTION
+.B gsl-randist 
+is a demonstration program for the GNU Scientific Library.
+It generates n random samples from the distribution DIST using the distribution
+parameters param1, param2, ...
+.SH EXAMPLE
+Here is an example.  We generate 10000 random samples from a Cauchy
+distribution with a width of 30 and histogram them over the range -100 to
+100, using 200 bins.
+ 
+     gsl-randist 0 10000 cauchy 30 | gsl-histogram -100 100 200 > histogram.dat
+ 
+A plot of the resulting histogram will show the familiar shape of the
+Cauchy distribution with fluctuations caused by the finite sample
+size.
+
+     awk '{print $1, $3 ; print $2, $3}' histogram.dat | graph -T X
+
+.SH SEE ALSO
+.BR gsl(3) ,
+.BR gsl-histogram(1) .
+
+.SH AUTHOR
+.B gsl-randist 
+was written by James Theiler and Brian Gough.
+Copyright 1996-2000; for copying conditions see the GNU General
+Public Licence. 
+
+This manual page was added by the Dirk Eddelbuettel
+<edd@debian.org>, the Debian GNU/Linux maintainer for
+.BR GSL .

diff --git a/util/X86LINUX64/share/man/man3/gsl.3 b/util/X86LINUX64/share/man/man3/gsl.3
new file mode 100644 (file)
index 0000000..1f82292
--- /dev/null
+++ b/util/X86LINUX64/share/man/man3/gsl.3
@@ -0,0 +1,58 @@
+.TH GSL 3 "GNU Scientific Library" "GSL Team" \" -*- nroff -*-
+.SH NAME
+gsl - GNU Scientific Library
+.SH SYNOPSIS
+#include <gsl/...>
+.SH DESCRIPTION
+The GNU Scientific Library (GSL) is a collection of routines for
+numerical computing.  The routines are written from scratch by the GSL
+team in C, and present a modern Applications Programming Interface
+(API) for C programmers, allowing wrappers to be written for very high
+level languages.
+.PP
+The library covers the following areas,
+.TP
+.nf
+.BR
+Complex Numbers
+Roots of Polynomials
+Special Functions
+Vectors and Matrices
+Permutations
+Combinations
+Sorting
+BLAS Support
+Linear Algebra
+Eigensystems
+Fast Fourier Transforms
+Quadrature
+Random Numbers
+Quasi-Random Sequences
+Random Distributions
+Statistics
+Histograms
+N-Tuples
+Monte Carlo Integration
+Simulated Annealing
+Differential Equations
+Interpolation
+Numerical Differentiation
+Chebyshev Approximations
+Series Acceleration
+Discrete Hankel Transforms
+Root-Finding
+Minimization
+Least-Squares Fitting
+Physical Constants
+IEEE Floating-Point
+.fi
+.PP
+For more information please consult the GSL Reference Manual, which is
+available as an info file.  You can read it online using the shell
+command 
+.B info gsl-ref 
+(if the library is installed).
+.PP
+Please report any bugs to 
+.B bug-gsl@gnu.org.
+