--- /dev/null
+../sbin/MachineIndependent
\ No newline at end of file
set auto_index(menuMultiRoiAllDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
set auto_index(menuMultiRoiDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
set auto_index(menuEditCreate) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(fft2dCmd) [list source [file join $dir fft2dCmd.wish]]
set auto_index(layerLineRecreate) [list source [file join $dir LayerLineUtil.wish]]
set auto_index(layerLineCreate) [list source [file join $dir LayerLineUtil.wish]]
set auto_index(layerLineClear) [list source [file join $dir LayerLineUtil.wish]]
set auto_index(sectionClear) [list source [file join $dir SectionUtil.wish]]
set auto_index(sectionChange) [list source [file join $dir SectionUtil.wish]]
set auto_index(unitCellRecreate) [list source [file join $dir UnitCell.wish]]
-set auto_index(fft2dCmd) [list source [file join $dir fft2dCmd.wish]]
--- /dev/null
+argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+ ../inc/../inc/mrcImageMeanFreePathCalc.h \
+ /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/File.h \
+ /Users/tacyas/Eos/include/Memory.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/limits.h \
+ /usr/include/limits.h /usr/include/machine/limits.h \
+ /usr/include/i386/limits.h /usr/include/i386/_limits.h \
+ /usr/include/sys/syslimits.h
+init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+ ../inc/../inc/mrcImageMeanFreePathCalc.h \
+ /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/File.h \
+ /Users/tacyas/Eos/include/Memory.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/limits.h \
+ /usr/include/limits.h /usr/include/machine/limits.h \
+ /usr/include/i386/limits.h /usr/include/i386/_limits.h \
+ /usr/include/sys/syslimits.h
+usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ ../inc/config.h ../inc/../inc/mrcImageMeanFreePathCalc.h
+util.o: util.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ ../inc/config.h ../inc/../inc/mrcImageMeanFreePathCalc.h
--- /dev/null
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
+include $(EOS_HOME)/src/Config/DefineTool.inc
+
+LIBFILES = \
+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
+
+LIBFILESDEBUG = \
+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
+
+SRCC = \
+ $(OBJECTNAME).c \
+ init.c \
+ argCheck.c \
+ usage.c \
+ util.c
+
+SRCCXX = \
+ $(OBJECTNAME).cc \
+ init.cc \
+ argCheck.cc \
+ usage.cc \
+ util.cc
+
+MODULES = \
+ $(OBJECTNAME).o \
+ init.o \
+ argCheck.o \
+ usage.o \
+ util.o
+
+REALMODULES = \
+ $(OSTYPE)/$(OBJECTNAME).o \
+ $(OSTYPE)/init.o \
+ $(OSTYPE)/argCheck.o \
+ $(OSTYPE)/usage.o \
+ $(OSTYPE)/util.o
+
+MODULESDEBUG = \
+ $(OBJECTNAME).debugo \
+ init.debugo \
+ argCheck.debugo \
+ usage.debugo \
+ util.debugo
+
+MODULESCUDAGDB = \
+ $(OBJECTNAME).cudagdb.o \
+ init.cudagdb.o \
+ argCheck.cudagdb.o \
+ usage.cudagdb.o \
+ util.cudagdb.o
+
+REALMODULESDEBUG = \
+ $(OSTYPE)/$(OBJECTNAME).debugo \
+ $(OSTYPE)/init.debugo \
+ $(OSTYPE)/argCheck.debugo \
+ $(OSTYPE)/usage.debugo \
+ $(OSTYPE)/util.debugo
+
+
+$(OBJECTNAME): $(MODULES) $(LIBFILES)
+ @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+ then \
+ echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+ then \
+ echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+ then \
+ echo "MICO"; \
+ echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+ then \
+ echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ; \
+ $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ; \
+ fi
+
+
+$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
+ @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+ then \
+ echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+ then \
+ echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+ then \
+ echo "MICO"; \
+ echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+ then \
+ echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+
+$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
+ echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
+ $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
+
+include ./.Depend
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc
--- /dev/null
+../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/X86MAC64
\ No newline at end of file
# element name is the name of a command and the value is
# a script that loads the command.
-set auto_index(fileSaveSureWin) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveSureOK) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveSureCancel) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveSureWinResources) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSave) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveResources) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveBindings) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveList) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveOK) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveCancel) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveClick) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveTake) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveComplete) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSelect) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectResources) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectBindings) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectList) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectOK) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectCancel) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectClick) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectTake) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectComplete) [list source [file join $dir fileSelect.wish]]
-set auto_index(colormapSet) [list source [file join $dir Colormap.wish]]
-set auto_index(seqFileTemplateChange) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelect) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectBindings) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectList) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileTemplateSelectOK) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileTemplateSelectComplete) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectOK) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectComplete) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectPrev) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectNext) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectCancel) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectClick) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectTake) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(CheckButtonsCreateWithPack) [list source [file join $dir VariousButton.wish]]
-set auto_index(RadioButtonsCreateWithPack) [list source [file join $dir VariousButton.wish]]
-set auto_index(RadioButtonsCreateWithPackWithCommand) [list source [file join $dir VariousButton.wish]]
-set auto_index(RadioButtonsCreate) [list source [file join $dir VariousButton.wish]]
-set auto_index(CheckButtonsCreate) [list source [file join $dir VariousButton.wish]]
-set auto_index(CommandEntry) [list source [file join $dir CommandEntry.wish]]
-set auto_index(CommandEntryWithSelection) [list source [file join $dir CommandEntry.wish]]
-set auto_index(CommandEntryWithSelectionEntrySet) [list source [file join $dir CommandEntry.wish]]
-set auto_index(CommandEntryWithUpDown) [list source [file join $dir CommandEntry.wish]]
-set auto_index(CommandEntryWithUpDownUp) [list source [file join $dir CommandEntry.wish]]
-set auto_index(CommandEntryWithUpDownDown) [list source [file join $dir CommandEntry.wish]]
-set auto_index(bltResetBindings) [list source [file join $dir graphFeature.wish]]
-set auto_index(bltActivateLegend) [list source [file join $dir graphFeature.wish]]
-set auto_index(SetActiveLegend) [list source [file join $dir graphFeature.wish]]
-set auto_index(SetCrosshairs) [list source [file join $dir graphFeature.wish]]
-set auto_index(bltFindElement) [list source [file join $dir graphFeature.wish]]
-set auto_index(bltFlashPoint) [list source [file join $dir graphFeature.wish]]
-set auto_index(SetClosestPoint) [list source [file join $dir graphFeature.wish]]
-set auto_index(bltGetCoords) [list source [file join $dir graphFeature.wish]]
-set auto_index(bltGetAnchor) [list source [file join $dir graphFeature.wish]]
-set auto_index(bltGetAnchorX) [list source [file join $dir graphFeature.wish]]
-set auto_index(bltBox) [list source [file join $dir graphFeature.wish]]
-set auto_index(bltBoxX) [list source [file join $dir graphFeature.wish]]
-set auto_index(bltScan) [list source [file join $dir graphFeature.wish]]
-set auto_index(bltScanX) [list source [file join $dir graphFeature.wish]]
-set auto_index(bltZoom) [list source [file join $dir graphFeature.wish]]
-set auto_index(bltZoomX) [list source [file join $dir graphFeature.wish]]
-set auto_index(SetZoom) [list source [file join $dir graphFeature.wish]]
-set auto_index(SetZoomX) [list source [file join $dir graphFeature.wish]]
-set auto_index(SetPrint) [list source [file join $dir graphFeature.wish]]
-set auto_index(NotSupportedCommand) [list source [file join $dir tclUtil.wish]]
-set auto_index(Canvas) [list source [file join $dir Canvas.wish]]
-set auto_index(scrolledCanvas) [list source [file join $dir Canvas.wish]]
set auto_index(Blt_ActiveLegend) [list source [file join $dir bltGraph.wish]]
set auto_index(Blt_Crosshairs) [list source [file join $dir bltGraph.wish]]
set auto_index(Blt_ZoomStack) [list source [file join $dir bltGraph.wish]]
set auto_index(::blt::Box) [list source [file join $dir bltGraph.wish]]
set auto_index(Blt_PostScriptDialog) [list source [file join $dir bltGraph.wish]]
set auto_index(::blt::ResetPostScript) [list source [file join $dir bltGraph.wish]]
-set auto_index(fileCanBeOverwritten) [list source [file join $dir fileUtil.wish]]
-set auto_index(relativePathGet) [list source [file join $dir fileUtil.wish]]
+set auto_index(Canvas) [list source [file join $dir Canvas.wish]]
+set auto_index(scrolledCanvas) [list source [file join $dir Canvas.wish]]
+set auto_index(colormapSet) [list source [file join $dir Colormap.wish]]
+set auto_index(CommandEntry) [list source [file join $dir CommandEntry.wish]]
+set auto_index(CommandEntryWithSelection) [list source [file join $dir CommandEntry.wish]]
+set auto_index(CommandEntryWithSelectionEntrySet) [list source [file join $dir CommandEntry.wish]]
+set auto_index(CommandEntryWithUpDown) [list source [file join $dir CommandEntry.wish]]
+set auto_index(CommandEntryWithUpDownUp) [list source [file join $dir CommandEntry.wish]]
+set auto_index(CommandEntryWithUpDownDown) [list source [file join $dir CommandEntry.wish]]
+set auto_index(eosCommandExecute) [list source [file join $dir commandUtil.wish]]
set auto_index(::CTF::Init) [list source [file join $dir ctfInfo.wish]]
set auto_index(::CTF::Win) [list source [file join $dir ctfInfo.wish]]
set auto_index(::CTF::ctfInfoGraphInfoFrameCreate) [list source [file join $dir ctfInfo.wish]]
set auto_index(::CTF::ctfInfoScatteringCalc) [list source [file join $dir ctfInfo.wish]]
set auto_index(::CTF::ctfInfoListGet) [list source [file join $dir ctfInfo.wish]]
set auto_index(::CTF::ctfInfoAppend) [list source [file join $dir ctfInfo.wish]]
-set auto_index(eosCommandExecute) [list source [file join $dir commandUtil.wish]]
+set auto_index(fileSaveSureWin) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveSureOK) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveSureCancel) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveSureWinResources) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSave) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveResources) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveBindings) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveList) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveOK) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveCancel) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveClick) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveTake) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveComplete) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSelect) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectResources) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectBindings) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectList) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectOK) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectCancel) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectClick) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectTake) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectComplete) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileCanBeOverwritten) [list source [file join $dir fileUtil.wish]]
+set auto_index(relativePathGet) [list source [file join $dir fileUtil.wish]]
+set auto_index(bltResetBindings) [list source [file join $dir graphFeature.wish]]
+set auto_index(bltActivateLegend) [list source [file join $dir graphFeature.wish]]
+set auto_index(SetActiveLegend) [list source [file join $dir graphFeature.wish]]
+set auto_index(SetCrosshairs) [list source [file join $dir graphFeature.wish]]
+set auto_index(bltFindElement) [list source [file join $dir graphFeature.wish]]
+set auto_index(bltFlashPoint) [list source [file join $dir graphFeature.wish]]
+set auto_index(SetClosestPoint) [list source [file join $dir graphFeature.wish]]
+set auto_index(bltGetCoords) [list source [file join $dir graphFeature.wish]]
+set auto_index(bltGetAnchor) [list source [file join $dir graphFeature.wish]]
+set auto_index(bltGetAnchorX) [list source [file join $dir graphFeature.wish]]
+set auto_index(bltBox) [list source [file join $dir graphFeature.wish]]
+set auto_index(bltBoxX) [list source [file join $dir graphFeature.wish]]
+set auto_index(bltScan) [list source [file join $dir graphFeature.wish]]
+set auto_index(bltScanX) [list source [file join $dir graphFeature.wish]]
+set auto_index(bltZoom) [list source [file join $dir graphFeature.wish]]
+set auto_index(bltZoomX) [list source [file join $dir graphFeature.wish]]
+set auto_index(SetZoom) [list source [file join $dir graphFeature.wish]]
+set auto_index(SetZoomX) [list source [file join $dir graphFeature.wish]]
+set auto_index(SetPrint) [list source [file join $dir graphFeature.wish]]
+set auto_index(seqFileTemplateChange) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelect) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectBindings) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectList) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileTemplateSelectOK) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileTemplateSelectComplete) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectOK) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectComplete) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectPrev) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectNext) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectCancel) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectClick) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectTake) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(NotSupportedCommand) [list source [file join $dir tclUtil.wish]]
+set auto_index(CheckButtonsCreateWithPack) [list source [file join $dir VariousButton.wish]]
+set auto_index(RadioButtonsCreateWithPack) [list source [file join $dir VariousButton.wish]]
+set auto_index(RadioButtonsCreateWithPackWithCommand) [list source [file join $dir VariousButton.wish]]
+set auto_index(RadioButtonsCreate) [list source [file join $dir VariousButton.wish]]
+set auto_index(CheckButtonsCreate) [list source [file join $dir VariousButton.wish]]
WORLDNAME=Tools
WORLDNAME=Tools
WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+++ /dev/null
-include ../Config/Define.inc
-include Config/Define.inc
-include .Source
-
-include Config/Target.inc
--- /dev/null
+/Users/tacyas/Eos/src/Config/Template/ToolsHomeTemplate.Dir/Makefile
\ No newline at end of file
mrcImageMappingtoPdb \
mrcImageMasking \
mrcImageMaskingByImage \
+mrcImageMeanFreePathCalc \
mrcImageMergebyside \
mrcImageMirroring \
mrcImageModeChange \
--- /dev/null
+OBJECTNAME = mrcImageMeanFreePathCalc
+EXTRA_LIB =
+EXTRA_CCOPTS =
+EXTRA_INC =
--- /dev/null
+# OptionControlFile
+# FileFormat
+"-i","-i[nput]","Input:mrcImage","Essential","1","1","In","inFile::mrcImage","NULL"
+"-o","-o[utput]","Output:distribution","Optional","1","1","Out","outFile::ASCII","stdout"
+"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
+"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
--- /dev/null
+include ../../../Config/Define.inc
+include ../../Config/Define.inc
+include ../Config/Define.inc
+include Config/Define.inc
+
+all:
+ cd src; make all; cd ..
+
+install:
+ cd src; make install; cd ..
+
+
+putSF:
+ if [ -f private ] ; \
+ then \
+ echo "$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME) is private"; \
+ else \
+ cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE commit || cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE import src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME); \
+ fi
+
+put:
+ cd src; make put; cd ..
+
+clean:
+ cd src; make clean; cd ..
+
+depend:
+ cd src; make depend; cd ..
+
+check:
+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+ echo making directory; \
+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+ fi
+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
+ @$(RM) src/Makefile
+ @echo "New src/Makefile"
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+ @cd src; touch $(OSTYPE)/.Depend; make depend
+
+update:
+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+ echo making directory; \
+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+ fi
+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
+ @$(RM) src/Makefile
+ @echo "New src/Makefile"
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+ @cd src; touch $(OSTYPE)/.Depend; echo "Y" | make update
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit
+
+backup:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
+
+backup-all:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
+
+distribute:
+ cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+distribute-all:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+eosintroduce:
+ ${EOS_HOME}/sbin/eosintroduce ${WORLDNAME} ${CLASSNAME} ${OBJECTNAME} ./
+
+include Config/Target.inc
--- /dev/null
+install:
+ cd ../src; make install-doc; cd ../doc
--- /dev/null
+#ifndef CONFIG_H
+#define CONFIG_H
+
+#include "../inc/mrcImageMeanFreePathCalc.h"
+
+#endif /* CONFIG_H */
--- /dev/null
+#ifndef MRCIMAGEMEANFREEPATHCALC_H
+#define MRCIMAGEMEANFREEPATHCALC_H
+#include <stdio.h>
+#include <stdlib.h>
+
+#define OPTION_FLAG '-'
+#define OPTION_FLAG_POS (0)
+#define OPTION_POS (1)
+
+
+
+
+typedef struct mrcImageMeanFreePathCalcInfo {
+ long flagRedirect;
+
+ long flagIn;
+ char* In;
+ FILE* fptIn;
+
+ long flagOut;
+ char* Out;
+ FILE* fptOut;
+
+ long flagconfigFile;
+ char* configFile;
+ FILE* fptconfigFile;
+
+ long flagmode;
+ long mode;
+
+} mrcImageMeanFreePathCalcInfo;
+#ifdef __cplusplus
+extern "C" {
+#endif
+extern void argCheck(mrcImageMeanFreePathCalcInfo* info, int argc, char* avgv[]);
+extern void khorosInit(int argc, char* avgv[]);
+extern void init0(mrcImageMeanFreePathCalcInfo* info);
+extern void init1(mrcImageMeanFreePathCalcInfo* info);
+extern void usage(char* usage);
+extern void additionalUsage(void);
+extern void htmlBeforeUsage(char* usage);
+extern void htmlAfterUsage(char* usage);
+#ifdef __cplusplus
+};
+#endif
+#endif /* MRCIMAGEMEANFREEPATHCALC_H */
--- /dev/null
+include ../Config/Define.inc
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+
+EOSHOME=../../../../../
+DSTDIR=$(EOSHOME)/bin
+DSTDOC=$(EOSHOME)/doc
+DSTTAR=$(EOSHOME)/tar
+
+INCFILES =
+
+LIBFILES = \
+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
+
+LIBFILESDEBUG = \
+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
+
+SRCC = \
+ $(OBJECTNAME).c \
+ init.c \
+ argCheck.c \
+ usage.c \
+ util.c \
+
+SRCCXX = \
+ $(OBJECTNAME).cc \
+ init.cc \
+ argCheck.cc \
+ usage.cc \
+ util.cc \
+
+MODULES = \
+ $(OBJECTNAME).o \
+ init.o \
+ argCheck.o \
+ usage.o \
+ util.o \
+
+REALMODULES = \
+ $(OSTYPE)/$(OBJECTNAME).o \
+ $(OSTYPE)/init.o \
+ $(OSTYPE)/argCheck.o \
+ $(OSTYPE)/usage.o \
+ $(OSTYPE)/util.o
+
+MODULESDEBUG = \
+ $(OBJECTNAME).debugo \
+ init.debugo \
+ argCheck.debugo \
+ usage.debugo \
+ util.debugo \
+
+REALMODULESDEBUG = \
+ $(OSTYPE)/$(OBJECTNAME).debugo \
+ $(OSTYPE)/init.debugo \
+ $(OSTYPE)/argCheck.debugo \
+ $(OSTYPE)/usage.debugo \
+ $(OSTYPE)/util.debugo
+
+
+all: $(OSTYPE)/$(OBJECTNAME)
+ if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+
+debug: $(OSTYPE)/$(OBJECTNAME).debug
+
+cudagdb: $(OSTYPE)/$(OBJECTNAME).cudagdb
+
+
+$(OSTYPE)/$(OBJECTNAME)::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME) WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).debug::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).debug WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).cudagdb::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).cudagdb WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit
+
+edit:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsEdit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsEdit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsEdit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsEdit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsEdit OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+unedit:
+ @if [ -w $(OBJECTNAME).c ]; \
+ then \
+ sccsUnedit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are not editable"; \
+ fi
+ @if [ -w wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsUnedit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are not editable."; \
+ fi
+ @if [ -w ruby/$(OBJECTNAME).rb]; \
+ then \
+ cd ruby; sccsUnedit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsUnedit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsUnedit OptionControlFile; \
+ else \
+ echo "OptionControlFile are not editable."; \
+ fi
+
+report:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsReport $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsReport $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsReport $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ] ; \
+ then \
+ cd perl; sccsReport $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsReport OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+clean :
+ rm -f *.debugo $(OSTYPE)/*.debugo *.cudagdbo $(OSTYPE)/*.cudagdbo *.o $(OSTYPE)/*.o *.linkinfo $(OSTYPE)/*.linkinfo \
+ $(OSTYPE)/$(OBJECTNAME) $(OSTYPE)/*.$(OSTYPE) \
+ $(OSTYPE)/$(OBJECTNAME).debug $(OSTYPE)/*.$(OSTYPE).debug \
+ $(OSTYPE)/$(OBJECTNAME).cudagdb $(OSTYPE)/*.$(OSTYPE).cudagdb \
+ $(OSTYPE)/$(OBJECTNAME).linkinfo $(OSTYPE)/*.$(OSTYPE).linkinfo \
+ *.bak *.$(OSTYPE) core
+
+install: install-bin install-doc install-wish install-ruby install-shell install-perl
+ @if [ dummy$(KHOROS_KENGOBJ) != dummy ] ; \
+ then \
+ if [ -x $(KHOROS_KGENOBJ) ] ; \
+ then \
+ make install-khoros ; \
+ fi; \
+ fi
+
+install-bin:$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+
+$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME):$(OSTYPE)/$(OBJECTNAME) $(DSTDIR)/$(OBJECTNAME)
+ @echo ---- Installing to bin
+ @echo $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+ @if [ ! -d $(DSTDIR)/$(OSTYPE) ]; \
+ then \
+ mkdir $(DSTDIR)/$(OSTYPE); \
+ fi
+ @if [ -x $(OSTYPE)/$(OBJECTNAME) ]; \
+ then \
+ echo "Compilation is complete"; \
+ $(RM) -f $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ $(CD) $(OSTYPE); $(INSTALL) -m 555 $(OBJECTNAME) ../$(DSTDIR)/$(OSTYPE); \
+ $(CHMOD) 555 ../$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ else \
+ echo "Compilation is incomplete. $(OBJECTNAME)"; \
+ fi
+ @echo ---- end of bin
+
+install-wish:
+ @if [ -d wish ]; \
+ then \
+ echo "---- Tcl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/wish/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/wish/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f wish/* $(DSTDIR)/wish/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/wish/$(OBJECTNAME)/* ;\
+ touch $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ $(CHMOD) 666 $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ echo "---- Tcl/Tk file Installed";\
+ fi
+
+install-ruby:
+ @if [ -d ruby ]; \
+ then \
+ echo "---- Ruby/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/ruby/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/ruby/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f ruby/* $(DSTDIR)/ruby/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/ruby/$(OBJECTNAME)/* ; \
+ echo "---- Ruby/Tk file Installed"; \
+ fi
+
+install-perl:
+ @if [ -d perl ]; \
+ then \
+ echo "---- Perl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/perl/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/perl/$(OBJECTNAME) ; \
+ fi; \
+ $(CP) -f perl/* $(DSTDIR)/perl/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/perl/$(OBJECTNAME)/* ; \
+ echo "---- Perl/Tk file Installed"; \
+ fi
+
+install-shell:
+ @if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi
+ @if [ -d shell ]; \
+ then \
+ echo "---- Shell file Install"; \
+ if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f shell/* $(DSTDIR)/shell/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/shell/$(OBJECTNAME)/*; \
+ echo "---- Shell file Installed"; \
+ fi
+
+install-khoros:
+ @echo Installing to khoros
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KGENOBJ) ]; \
+ then \
+ echo kgenobj;\
+ $(KHOROS_KGENOBJ) -tb Eos -oname $(OBJECTNAME) -type script -pane -cantata true -cat Eos -subcat $(CLASSNAME) -description $(OBJECTNAME) -bname $(OBJECTNAME) -form -lang ksh ; \
+ fi
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(KHOROS_KSET) -tb Eos -oname $(OBJECTNAME) -icon $(OBJECTNAME) ; \
+ fi
+ @if [ -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(CHMOD) -R 775 ../../../../../objects/script/$(OBJECTNAME) ; \
+ if [ $? ] ; \
+ then \
+ echo "-- setting khoros ---" ; \
+ if [ -d ../../../../../objects/script/$(OBJECTNAME)/uis/ ] ; \
+ then \
+ $(CD) ../../../../../objects/script/$(OBJECTNAME)/uis/ ; \
+ $(RM) -f $(OBJECTNAME).pane ; \
+ $(LN) -s ../../../../src/Tools/$(CLASSNAME)/$(OBJECTNAME)/src/$(OBJECTNAME).pane $(OBJECTNAME).pane; \
+ $(CD) ../../ ; \
+ $(CHMOD) -R 555 $(OBJECTNAME); \
+ else \
+ echo "../../../../../objects/script/$(OBJECTNAME)/uis/ does not exist."; \
+ fi ; \
+ else \
+ echo "Failed !!: Cannot chage mode in installing $(OBJECTNAME) to khoros system"; \
+ fi ; \
+ echo "-- end of khoros-installing"; \
+ fi
+
+install-doc: html
+ @if [ ! -d $(DSTDOC)/SmallTools ]; \
+ then \
+ mkdir $(DSTDOC)/SmallTools ;\
+ fi
+ @if [ -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ]; \
+ then \
+ $(RM) -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ;\
+ fi
+ @$(CP) $(OBJECTNAME).html $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f ../doc/*.html ]; \
+ then \
+ $(CP) ../doc/*.html $(DSTDOC)/SmallTools/ ;\
+ fi
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f $(DSTDOC)/SmallTools/Makefile ]; \
+ then \
+ cd $(DSTDOC)/SmallTools; $(MAKE); \
+ fi
+
+html: $(OBJECTNAME).html
+
+configFileRead:
+ @ctrl2configFileRead $(CLASSNAME) $(OBJECTNAME) ../Config/OptionControlFile
+
+$(OBJECTNAME).html: $(OSTYPE)/$(OBJECTNAME)
+ @echo creating html
+ @$(OSTYPE)/$(OBJECTNAME) -html 2> $(OBJECTNAME).html.tmp
+ @sed -e s/$(OSTYPE)\\/// $(OBJECTNAME).html.tmp > $(OBJECTNAME).html
+ @$(RM) $(OBJECTNAME).html.tmp
+
+$(DSTDIR)/$(OBJECTNAME): $(OSTYPE)/$(OBJECTNAME)
+ @ln -s -f ../sbin/MachineIndependent $@
+
+depend::
+ @echo dependency checking now
+ @if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+ rm -f $(OSTYPE)/.Depend
+ #echo C
+ @if [ -f $(OBJECTNAME).c ] ; \
+ then \
+ echo "dependency: *.c"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c >> $(OSTYPE)/.Depend ; \
+ fi
+ #echo CC
+ @if [ -f $(OBJECTNAME).cc ] ; \
+ then \
+ echo "dependency: *.cc"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).ccm ] ; \
+ then \
+ echo "dependency: *.ccm"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).cu ] ; \
+ then \
+ echo "dependency: *.cu"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu >> $(OSTYPE)/.Depend ; \
+ fi
+
+update:../Config/OptionControlFile
+ maketool $(CLASSNAME) $(OBJECTNAME) update
+
+changeName::
+
+Test:$(OSTYPE)/$(OBJECTNAME) TestDir
+ @if [ -f test/Makefile ] ; \
+ then \
+ cd test; make ; \
+ else \
+ echo "No test Makefile"; \
+ fi
+
+TestDir::
+ @if [ ! -d test ] ; \
+ then \
+ echo "Creating test dir"; \
+ mkdir test; \
+ fi
+ @if [ ! -f test/Makefile ] ; \
+ then \
+ echo "Creating Makefile"; \
+ cd test; \
+ protoTestMakefileCreate; \
+ fi
+ @if [ ! -d test/data ]; \
+ then \
+ mkdir $(EOSHOME)/data/$(OBJECTNAME); \
+ cd test; \
+ ln -sf ../$(EOSHOME)/data/$(OBJECTNAME) data; \
+ fi
+
+tar::
+ cd $(DSTTAR); tar cvf Tools.$(CLASSNAME).$(OBJECTNAME).tar ../bin/$(OBJECTNAME) \
+ ../bin/*/$(OBJECTNAME).* \
+ ../src/Tools/$(CLASSNAME)/$(OBJECTNAME) \
+ ; gzip Tools.$(CLASSNAME).$(OBJECTNAME).tar
+
+-include $(OSTYPE)/.Depend
+-include ../Config/Target.inc
--- /dev/null
+../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/X86MAC64
\ No newline at end of file
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "String.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+argCheck(mrcImageMeanFreePathCalcInfo* info, int argc, char* argv[])
+{
+ long i;
+ char s[1024];
+ FILE* fpt;
+
+ if(NULL==(fpt=fopen(".EosLog", "a+"))) {
+
+ } else {
+ for(i=0; i<argc; i++) {
+ fprintf(fpt, "%s ", argv[i]);
+ }
+ fprintf(fpt, "\n");
+ fclose(fpt);
+ }
+ for(i=1; i<argc; i++) {
+ if(OPTION_FLAG==argv[i][OPTION_FLAG_POS]) {
+ SSWITCH(argv[i]+OPTION_POS)
+ SCASE("i") {
+ if(i+1<argc) {
+ info->In = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagIn++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("o") {
+ if(i+1<argc) {
+ info->Out = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagOut++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("c") {
+ if(i+1<argc) {
+ info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagconfigFile++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("m") {
+ if(i+1<argc) {
+ info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagmode++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("h") {
+ usage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SCASE("html") {
+ htmlBeforeUsage(argv[0]);
+ usage(argv[0]);
+ htmlAfterUsage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SDEFAULT {
+ fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ break;
+ }
+ SSWITCHEND;
+ }
+ }
+}
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "String.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+init0(mrcImageMeanFreePathCalcInfo* info)
+{
+ info->fptIn = NULL; info->flagIn = 0;
+ info->fptOut = stdout; info->flagOut = 0;
+ info->fptconfigFile = NULL; info->flagconfigFile = 0;
+ info->mode = 0; info->flagmode = 0;
+}
+
+void
+init1(mrcImageMeanFreePathCalcInfo* info)
+{
+ char s[1024];
+ int i;
+ if(!info->flagIn) {
+ stringGetFromFile(s, "In", stdin, stdout, 0);
+ info->In = stringGetNthWord(s, 1, " ,\t");
+ info->flagIn++;
+ }
+ if(info->flagIn) {
+ info->fptIn = fileOpen(info->In, "r");
+ }
+
+ if(info->flagOut) {
+ info->fptOut = fileOpen(info->Out, "w");
+ }
+
+ if(info->flagconfigFile) {
+ info->fptconfigFile = fileOpen(info->configFile, "r");
+ }
+
+ if(info->flagmode) {
+ }
+
+}
+#ifdef KHOROS
+#include <stdio.h>
+#include "bootstrap.h"
+#include "dataserv.h"
+#include "datamanip.h"
+extern void func_usage_additions(void);
+extern void func_free_args(kexit_status status, kaddr client_data);
+extern void func_get_args(kform* pane);
+
+void
+func_usage_additions(void)
+{
+}
+void
+func_free_args(kexit_status status, kaddr client_data)
+{
+}
+void
+func_get_args(kform* pane)
+{
+}
+void
+khorosInit(int argc, char* argv[])
+{
+ char* eospath;
+ char panepath[1024];
+ FILE* fpt;
+
+ eospath = getenv("EOS_HOME");
+ sprintf(panepath, "%s/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/mrcImageMeanFreePathCalc.pane", eospath);
+ khoros_initialize(argc, argv, "EOS");
+ fpt = fopen(panepath, "r"); if(NULL!=fpt) {
+ fclose(fpt);
+ kclui_initialize(panepath, KGEN_NONE, "EOS", "mrcImageMeanFreePathCalc",
+ func_usage_additions,
+ func_get_args,
+ func_free_args);
+ }
+}
+#endif /* KHOROS */
--- /dev/null
+/*
+# mrcImageMeanFreePathCalc : $Revision$
+# $Date$
+# Created by $Author$
+# Usage : mrcImageMeanFreePathCalc
+# Attention
+# $Loccker$
+# $State$
+#
+*/
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#define GLOBAL_DECLARATION
+#include "../inc/config.h"
+
+#define DEBUG
+#include "genUtil.h"
+#include "mrcImage.h"
+#include "Memory.h"
+
+typedef struct lmrcImageMeanFreePathCalcInfo {
+ int N;
+ int* countWhite;
+ int* countBlack;
+ int* countWhiteEdge;
+ int* countBlackEdge;
+} lmrcImageMeanFreePathCalcInfo;
+
+typedef enum lmrcImageMeanFreePathCalcMode {
+ MeanFreePathCalcModeAlongZaxis=0,
+} lmrcImageMeanFreePathCalcMode;
+
+extern void lmrcImageMeanFreePathCalcPrint(FILE* fpt, lmrcImageMeanFreePathCalcInfo* linfo, lmrcImageMeanFreePathCalcMode mode);
+extern void lmrcImageMeanFreePathCalc(mrcImage* in, lmrcImageMeanFreePathCalcInfo* linfo, lmrcImageMeanFreePathCalcMode mode);
+extern void lmrcImageMeanFreePathCalcAlongZaxis(mrcImage* in, lmrcImageMeanFreePathCalcInfo* linfo, lmrcImageMeanFreePathCalcMode mode);
+
+extern void lmrcImageMeanFreePathCalcModePrint(FILE* fpt);
+
+int
+main(int argc, char* argv[])
+{
+ mrcImageMeanFreePathCalcInfo info;
+ lmrcImageMeanFreePathCalcInfo linfo;
+ mrcImage in;
+
+ init0(&info);
+ argCheck(&info, argc, argv);
+ init1(&info);
+
+ DEBUGPRINT("Program Start\n");
+
+ mrcFileRead(&in, info.In, "in main", 0);
+
+ lmrcImageMeanFreePathCalc(&in, &linfo, info.mode);
+
+ lmrcImageMeanFreePathCalcPrint(info.fptOut, &linfo, info.mode);
+
+ exit(EXIT_SUCCESS);
+}
+
+void
+additionalUsage()
+{
+ fprintf(stderr, "----- Additional Usage -----\n");
+ lmrcImageMeanFreePathCalcModePrint(stderr);
+}
+
+
+void
+lmrcImageMeanFreePathCalcModePrint(FILE* fpt)
+{
+ fprintf(fpt, "%d: AlongZ-axis\n", MeanFreePathCalcModeAlongZaxis);
+}
+
+void
+lmrcImageMeanFreePathCalc(mrcImage* in, lmrcImageMeanFreePathCalcInfo* linfo, lmrcImageMeanFreePathCalcMode mode)
+{
+ switch(mode) {
+ case MeanFreePathCalcModeAlongZaxis: {
+ lmrcImageMeanFreePathCalcAlongZaxis(in, linfo, mode);
+ break;
+ }
+ default: {
+ fprintf(stderr, "Not supported mode: %d\n", mode);
+ exit(EXIT_FAILURE);
+ break;
+ }
+ }
+
+}
+
+void
+lmrcImageMeanFreePathCalcPrint(FILE* fpt, lmrcImageMeanFreePathCalcInfo* linfo, lmrcImageMeanFreePathCalcMode mode)
+{
+ int i;
+ for(i=0; i<=linfo->N; i++) {
+ fprintf(fpt, "%4d %6d %6d %6d %6d %6.3f %6.3f %6.3f %6.3f\n",
+ i,
+ linfo->countWhite[i], linfo->countBlack[i],
+ linfo->countWhiteEdge[i], linfo->countBlackEdge[i],
+ linfo->countWhite[i]/(double)linfo->countWhite[0]*100, linfo->countBlack[i]/(double)linfo->countBlack[0]*100,
+ linfo->countWhiteEdge[i]/(double)linfo->countWhiteEdge[0]*100, linfo->countBlackEdge[i]/(double)linfo->countBlackEdge[0]*100);
+ }
+}
+
+
+void
+lmrcImageMeanFreePathCalcAlongZaxis(mrcImage* in, lmrcImageMeanFreePathCalcInfo* linfo, lmrcImageMeanFreePathCalcMode mode)
+{
+ int* countBlack;
+ int* countWhite;
+ int* countBlackEdge;
+ int* countWhiteEdge;
+ int x, y, z;
+ int flagEdge;
+ double data;
+ double prevData;
+ int lengthWhite;
+ int lengthBlack;
+
+ countBlack = memoryAllocate(sizeof(int)*(in->HeaderN.z+1), "in lmrcImageMeanFreePathCalc");
+ countWhite = memoryAllocate(sizeof(int)*(in->HeaderN.z+1), "in lmrcImageMeanFreePathCalc");
+ countBlackEdge = memoryAllocate(sizeof(int)*(in->HeaderN.z+1), "in lmrcImageMeanFreePathCalc");
+ countWhiteEdge = memoryAllocate(sizeof(int)*(in->HeaderN.z+1), "in lmrcImageMeanFreePathCalc");
+
+ linfo->countBlack = countBlack;
+ linfo->countWhite = countWhite;
+ linfo->countBlackEdge = countBlackEdge;
+ linfo->countWhiteEdge = countWhiteEdge;
+ linfo->N = in->HeaderN.z;
+
+ for(y=0; y<in->HeaderN.y; y++) {
+ for(x=0; x<in->HeaderN.x; x++) {
+ flagEdge = 1;
+ lengthWhite = 0;
+ lengthBlack = 0;
+
+ // Start
+ mrcPixelDataGet(in, x, y, 0, &data, mrcPixelRePart, mrcPixelHowNearest);
+ if(0<data) {
+ countWhiteEdge[0]++;
+ lengthWhite++;
+ } else {
+ countBlackEdge[0]++;
+ lengthBlack++;
+ }
+ prevData = data;
+
+ // Interval
+ for(z=1; z<in->HeaderN.z-1; z++) {
+ mrcPixelDataGet(in, x, y, z, &data, mrcPixelRePart, mrcPixelHowNearest);
+ if(0<prevData) {
+ if(0<data) { // White continue
+ if(flagEdge) {
+ countWhiteEdge[0]++;
+ } else {
+ countWhite[0]++;
+ }
+ lengthWhite++;
+ } else { // White -> Black
+ if(flagEdge) {
+ countWhiteEdge[lengthWhite]++;
+ flagEdge=0;
+ } else {
+ countWhite[lengthWhite]++;
+ }
+ countBlack[0]++;
+ lengthWhite=0;
+ lengthBlack++;
+ }
+ } else {
+ if(0<data) { // Black -> White
+ if(flagEdge) {
+ countBlackEdge[lengthBlack]++;
+ flagEdge=0;
+ } else {
+ countBlack[lengthBlack]++;
+ }
+ countWhite[0]++;
+ lengthBlack=0;
+ lengthWhite++;
+ } else { // Black continue
+ if(flagEdge) {
+ countBlackEdge[0]++;
+ } else {
+ countBlack[0]++;
+ }
+ lengthBlack++;
+ }
+ }
+ prevData = data;
+ }
+
+ // End
+ mrcPixelDataGet(in, x, y, in->HeaderN.z-1, &data, mrcPixelRePart, mrcPixelHowNearest);
+
+ if(0<prevData) {
+ if(0<data) { // White continue
+ lengthWhite++;
+ countWhiteEdge[lengthWhite]++;
+ countWhiteEdge[0]++;
+ } else { // White -> Black
+ if(flagEdge) {
+ countWhiteEdge[lengthWhite]++;
+ } else {
+ countWhite[lengthWhite]++;
+ }
+ countBlackEdge[1]++;
+ countBlackEdge[0]++;
+ }
+ } else {
+ if(0<data) { // Black -> White
+ if(flagEdge) {
+ countBlackEdge[lengthBlack]++;
+ } else {
+ countBlack[lengthBlack]++;
+ }
+ countWhiteEdge[1]++;
+ countWhiteEdge[0]++;
+ } else { // Black continue
+ lengthBlack++;
+ if(flagEdge) {
+ countBlackEdge[lengthBlack]++;
+ countBlackEdge[0]++;
+ } else {
+ countBlack[lengthBlack]++;
+ countBlack[0]++;
+ }
+ }
+ }
+ }
+ }
+}
--- /dev/null
+<HTML>
+<HEAD>
+<TITLE>mrcImageMeanFreePathCalc</TITLE>
+</HEAD>
+<BODY>
+<H1>mrcImageMeanFreePathCalc</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: mrcImageMeanFreePathCalc
+Options:
+ [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input:mrcImage
+ [-o[utput] Out (stdout ).as(outFile::ASCII ) ] :Optional :Output:distribution
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+0: AlongZ-axis
+</PRE>
+</BODY>
+</HTML>
--- /dev/null
+-F 4.3 1 0 52x1+0+0 +0+0 'Cantata' cantata
+ -M 1 1 52x1+0+0 +1+0 ' ' subform
+ -P 1 0 52x1+0+1 +0+0 ' ' mrcImageMeanFreePathCalc
+ -D 1 0 9x1+0+0 'Options' _gui_options
+ -H 1 6x1+0+0 'License' 'license' $BOOTSTRAP/repos/license/License license
+ -E
+ -R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/mrcImageMeanFreePathCalc
+ -H 1 5x1+41+0 'Help' 'help page' $EOS/src/Tools/mrcImage/mrcImageMeanFreePathCalc/doc/mrcImageMeanFreePathCalc.doc help
+ -Q 1 0 5.25x1+47+0 'Close'
+ -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'Input:mrcImage' i
+ -O 1 0 1 0 0 1 -1x1+1+3.000000 ' ' 'Out' 'Output:distribution' o
+ -I 1 0 1 0 0 1 -1x1+1+4.500000 ' ' 'configFile' 'ConfigurationFile' c
+ -i 1 0 1 0 0 -1x1+1+6.000000 0 0 0 0 0 'mode' 'Mode' m
+ -E
+ -E
+-E
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
+void
+usage(char* thisProgram)
+{
+ fprintf(stderr, "Usage: %s\n", thisProgram);
+ fprintf(stderr, "Options:\n");
+ fprintf(stderr, " [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input:mrcImage\n");
+ fprintf(stderr, " [-o[utput] Out (stdout ).as(outFile::ASCII ) ] :Optional :Output:distribution\n");
+ fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");
+ fprintf(stderr, " [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode\n");
+ additionalUsage();
+}
+
+void
+htmlBeforeUsage(char* thisProgram)
+{
+ fprintf(stderr, "<HTML>\n");
+ fprintf(stderr, "<HEAD>\n");
+ fprintf(stderr, "<TITLE>%s</TITLE>\n", thisProgram);
+ fprintf(stderr, "</HEAD>\n");
+ fprintf(stderr, "<BODY>\n");
+ fprintf(stderr, "<H1>%s</H1>\n", thisProgram);
+ fprintf(stderr, "<H2>Usage</H2>\n");
+ fprintf(stderr, "<PRE>\n");
+}
+
+void
+htmlAfterUsage(char* thisProgram)
+{
+ fprintf(stderr, "</PRE>\n");
+ fprintf(stderr, "</BODY>\n");
+ fprintf(stderr, "</HTML>\n");
+}
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
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