with '#' will be ignored, and an empty message aborts the commit.
Committer: 安永卓生 <tacyas@yasunagatakuonoMacBook-Pro.local>
On branch master
Your branch is up-to-date with 'origin/master'.
Changes to be committed:
new file: bin/eosPointCurvatureInfo
new file: bin/mrcImageMergeFFT
modified: bin/wish/Display2/tclIndex
modified: include/ctfInfo.h
modified: include/eosBayes.h
modified: include/mrcImage.h
modified: lib/tclIndex
new file: src/Objects/Config/Target.inc
modified: src/Objects/DataManip/ctfInfo/doc/ctfInfo.html
modified: src/Objects/DataManip/mrcImage/doc/mrcImage.html
modified: src/Objects/DataManip/mrcImage/inc/mrcImage.h
modified: src/Objects/DataManip/mrcImage/src/lmrcImagePattersonFunctionCalc.c
modified: src/Objects/General/.Source.org
new file: src/Objects/General/Config/Target.inc
new file: src/Objects/General/Makefile
deleted: src/Objects/General/SpecialNumber/src/.tmp1
deleted: src/Objects/General/SpecialNumber/src/.tmp2
modified: src/Objects/General/eosBayes/doc/eosBayes.html
new file: src/Objects/Makefile
modified: src/Tools/Config/Define.inc
modified: src/Tools/Integration/Display2/src/Display2.html
modified: src/Tools/Integration/ctfDisplay/src/ctfDisplay.html
modified: src/Tools/Integration/imagesView/src/imagesView.html
modified: src/Tools/ctfInfo/ctfDeterminationByBayes/src/ctfDeterminationByBayes.html
modified: src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/argCheck.c
modified: src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/argCheck.c
modified: src/Tools/eosPoint/.Source.org
new file: src/Tools/eosPoint/eosPointCurvatureInfo/Config/Define.inc
new file: src/Tools/eosPoint/eosPointCurvatureInfo/Config/OptionControlFile
new file: src/Tools/eosPoint/eosPointCurvatureInfo/Config/Target.inc
renamed: src/Tools/eosPoint/eosPointTracker/Makefile -> src/Tools/eosPoint/eosPointCurvatureInfo/Makefile
new file: src/Tools/eosPoint/eosPointCurvatureInfo/doc/Makefile
new file: src/Tools/eosPoint/eosPointCurvatureInfo/inc/config.h
new file: src/Tools/eosPoint/eosPointCurvatureInfo/inc/eosPointCurvatureInfo.h
new file: src/Tools/eosPoint/eosPointCurvatureInfo/src/.Depend
new file: src/Tools/eosPoint/eosPointCurvatureInfo/src/.Source
new file: src/Tools/eosPoint/eosPointCurvatureInfo/src/Makefile
new file: src/Tools/eosPoint/eosPointCurvatureInfo/src/X86MAC64
new file: src/Tools/eosPoint/eosPointCurvatureInfo/src/argCheck.c
new file: src/Tools/eosPoint/eosPointCurvatureInfo/src/eosPointCurvatureInfo.c
new file: src/Tools/eosPoint/eosPointCurvatureInfo/src/eosPointCurvatureInfo.html
new file: src/Tools/eosPoint/eosPointCurvatureInfo/src/eosPointCurvatureInfo.pane
new file: src/Tools/eosPoint/eosPointCurvatureInfo/src/init.c
new file: src/Tools/eosPoint/eosPointCurvatureInfo/src/usage.c
new file: src/Tools/eosPoint/eosPointCurvatureInfo/src/util.c
modified: src/Tools/eosPoint/eosPointProjector/src/eosPointProjector.html
modified: src/Tools/filter/.Source.org
modified: src/Tools/filter/bin2mrc/src/bin2mrc.html
modified: src/Tools/filter/tiff2mrc/src/tiff2mrc.html
modified: src/Tools/mrcImage/.Source
modified: src/Tools/mrcImage/.Source.org
modified: src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/argCheck.c
modified: src/Tools/mrcImage/mrcImageDensityInfo/src/mrcImageDensityInfo.html
new file: src/Tools/mrcImage/mrcImageMergeFFT/Config/Define.inc
new file: src/Tools/mrcImage/mrcImageMergeFFT/Config/OptionControlFile
new file: src/Tools/mrcImage/mrcImageMergeFFT/Config/Target.inc
new file: src/Tools/mrcImage/mrcImageMergeFFT/Makefile
new file: src/Tools/mrcImage/mrcImageMergeFFT/doc/Makefile
new file: src/Tools/mrcImage/mrcImageMergeFFT/inc/config.h
new file: src/Tools/mrcImage/mrcImageMergeFFT/inc/mrcImageMergeFFT.h
new file: src/Tools/mrcImage/mrcImageMergeFFT/src/.Depend
new file: src/Tools/mrcImage/mrcImageMergeFFT/src/.Source
new file: src/Tools/mrcImage/mrcImageMergeFFT/src/Makefile
new file: src/Tools/mrcImage/mrcImageMergeFFT/src/X86MAC64
new file: src/Tools/mrcImage/mrcImageMergeFFT/src/argCheck.c
new file: src/Tools/mrcImage/mrcImageMergeFFT/src/init.c
new file: src/Tools/mrcImage/mrcImageMergeFFT/src/mrcImageMergeFFT.c
new file: src/Tools/mrcImage/mrcImageMergeFFT/src/mrcImageMergeFFT.html
new file: src/Tools/mrcImage/mrcImageMergeFFT/src/mrcImageMergeFFT.pane
new file: src/Tools/mrcImage/mrcImageMergeFFT/src/usage.c
new file: src/Tools/mrcImage/mrcImageMergeFFT/src/util.c
modified: src/Tools/mrcImage/mrcImagePattersonFunctionCalc/Config/OptionControlFile
modified: src/Tools/mrcImage/mrcImagePattersonFunctionCalc/inc/mrcImagePattersonFunctionCalc.h
modified: src/Tools/mrcImage/mrcImagePattersonFunctionCalc/src/argCheck.c
modified: src/Tools/mrcImage/mrcImagePattersonFunctionCalc/src/init.c
modified: src/Tools/mrcImage/mrcImagePattersonFunctionCalc/src/mrcImagePattersonFunctionCalc.c
modified: src/Tools/mrcImage/mrcImagePattersonFunctionCalc/src/mrcImagePattersonFunctionCalc.html
modified: src/Tools/mrcImage/mrcImagePattersonFunctionCalc/src/mrcImagePattersonFunctionCalc.pane
modified: src/Tools/mrcImage/mrcImagePattersonFunctionCalc/src/usage.c
copied: src/Tools/mrcImage/mrcImageUnbentROI/src/argCheck.c -> src/Tools/mrcImage/mrcImagePrint/src/argCheck.c
modified: src/Tools/mrcImage/mrcImagePrint3D/src/argCheck.c
modified: src/Tools/mrcImage/mrcImageShapePCA/src/argCheck.c
modified: src/Tools/mrcImage/mrcImageShapePCAFit/src/argCheck.c
modified: src/Tools/mrcImage/mrcImageUnbentROI/src/argCheck.c
modified: src/Tools/pdbUtil/pdbRhoFit/src/argCheck.c
modified: src/Tools/pdbUtil/pdbRhoFitTm/src/argCheck.c
modified: src/Tools/rec3d/llExtract/src/argCheck.c
modified: src/Tools/timeSeries/.Source.org
new file: src/Tools/timeSeries/Config/Target.inc
modified: src/Tools/timeSeries/mrcImageSeriesInfoPerPixel/src/mrcImageSeriesInfoPerPixel.html
--- /dev/null
+../sbin/MachineIndependent
\ No newline at end of file
--- /dev/null
+../sbin/MachineIndependent
\ No newline at end of file
# element name is the name of a command and the value is
# a script that loads the command.
-set auto_index(display2BindingSet) [list source [file join $dir Display2Binding.wish]]
-set auto_index(colormapChange) [list source [file join $dir Display2Colormap.wish]]
-set auto_index(display2DesktopSet) [list source [file join $dir Display2Desktop.wish]]
-set auto_index(display2ETCSet) [list source [file join $dir Display2ETCSet.wish]]
-set auto_index(fileOpenWinCreate) [list source [file join $dir Display2File.wish]]
-set auto_index(fileNewWinCreate) [list source [file join $dir Display2File.wish]]
-set auto_index(seqFileOpenWinCreate) [list source [file join $dir Display2File.wish]]
-set auto_index(seqFileNewWinCreate) [list source [file join $dir Display2File.wish]]
+set auto_index(roiAreaSelectStart) [list source [file join $dir RoiAreaSelect.wish]]
+set auto_index(roiAreaSelectMotion) [list source [file join $dir RoiAreaSelect.wish]]
+set auto_index(roiAreaSelectEnd) [list source [file join $dir RoiAreaSelect.wish]]
+set auto_index(roiAreaSelectOK) [list source [file join $dir RoiAreaSelect.wish]]
+set auto_index(projectionRecreate) [list source [file join $dir ProjectionUtil.wish]]
+set auto_index(projectionCreate) [list source [file join $dir ProjectionUtil.wish]]
+set auto_index(projectionClear) [list source [file join $dir ProjectionUtil.wish]]
+set auto_index(projectionChange) [list source [file join $dir ProjectionUtil.wish]]
set auto_index(fileOpen) [list source [file join $dir Display2Image.wish]]
set auto_index(mainImagePut) [list source [file join $dir Display2Image.wish]]
set auto_index(overviewImagePut) [list source [file join $dir Display2Image.wish]]
+set auto_index(roiAreaFFT) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(splineNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(rectangleNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(lineNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(pointDistance) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(pointDistance2) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(vectorAngle) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(coordGetInMainImageToReal) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(coordGetInMainImageToCanvas) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(dataGetInMainImageToReal) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(dataGetInMainImageToCanvas) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(pointSet) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(roiAreaZoomIn) [list source [file join $dir RoiAreaZoom.wish]]
+set auto_index(roiAreaZoomOut) [list source [file join $dir RoiAreaZoom.wish]]
+set auto_index(roiAreaZoom) [list source [file join $dir RoiAreaZoom.wish]]
+set auto_index(colormapChange) [list source [file join $dir Display2Colormap.wish]]
+set auto_index(display2SetVar) [list source [file join $dir Display2Init.wish]]
+set auto_index(display2InitVar) [list source [file join $dir Display2Init.wish]]
+set auto_index(display2InitVarSet) [list source [file join $dir Display2Init.wish]]
+set auto_index(diplay2CanvasInit) [list source [file join $dir Display2Init.wish]]
+set auto_index(display2Init) [list source [file join $dir Display2Init.wish]]
+set auto_index(roiInformationWinCreate) [list source [file join $dir Display2InfoROI.wish]]
+set auto_index(roiLineInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
+set auto_index(roiSplineInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
+set auto_index(roiRectangleInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
+set auto_index(roiAnalysisFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
set auto_index(histgramGraphCreate) [list source [file join $dir Display2Info.wish]]
set auto_index(display2InformationWinCreate) [list source [file join $dir Display2Info.wish]]
set auto_index(fileReopen) [list source [file join $dir Display2Info.wish]]
set auto_index(ctfInformationWinCreate) [list source [file join $dir Display2Info.wish]]
set auto_index(unitCellInformationWinCreate) [list source [file join $dir Display2Info.wish]]
set auto_index(scaleInfoWinCreate) [list source [file join $dir Display2Info.wish]]
-set auto_index(roiInformationWinCreate) [list source [file join $dir Display2InfoROI.wish]]
-set auto_index(roiLineInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
-set auto_index(roiSplineInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
-set auto_index(roiRectangleInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
-set auto_index(roiAnalysisFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
-set auto_index(display2SetVar) [list source [file join $dir Display2Init.wish]]
-set auto_index(display2InitVar) [list source [file join $dir Display2Init.wish]]
-set auto_index(display2InitVarSet) [list source [file join $dir Display2Init.wish]]
-set auto_index(diplay2CanvasInit) [list source [file join $dir Display2Init.wish]]
-set auto_index(display2Init) [list source [file join $dir Display2Init.wish]]
-set auto_index(display2MenuSet) [list source [file join $dir Display2Menu.wish]]
-set auto_index(menuFileCreate) [list source [file join $dir Display2Menu.wish]]
-set auto_index(menuSeqFileCreate) [list source [file join $dir Display2Menu.wish]]
-set auto_index(menuWindowCreate) [list source [file join $dir Display2Menu.wish]]
-set auto_index(menuInfoCreate) [list source [file join $dir Display2Menu.wish]]
-set auto_index(menuHelpCreate) [list source [file join $dir Display2Menu.wish]]
-set auto_index(menuExitCreate) [list source [file join $dir Display2Menu.wish]]
-set auto_index(display2MenuSet2) [list source [file join $dir Display2Menu2.wish]]
-set auto_index(roiRelatedObjectRecreate) [list source [file join $dir Display2MenuROI.wish]]
-set auto_index(menuRoiCreate) [list source [file join $dir Display2MenuROI.wish]]
-set auto_index(menuRoiCancelCommand) [list source [file join $dir Display2MenuROI.wish]]
-set auto_index(menuRoiSingleMultiTransform) [list source [file join $dir Display2MenuROI.wish]]
-set auto_index(menuMultiRoiOKCommand) [list source [file join $dir Display2MenuROI.wish]]
-set auto_index(menuMultiRoiAllDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
-set auto_index(menuMultiRoiDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
-set auto_index(menuEditCreate) [list source [file join $dir Display2MenuROI.wish]]
set auto_index(fft2dCmd) [list source [file join $dir fft2dCmd.wish]]
-set auto_index(layerLineRecreate) [list source [file join $dir LayerLineUtil.wish]]
-set auto_index(layerLineCreate) [list source [file join $dir LayerLineUtil.wish]]
-set auto_index(layerLineClear) [list source [file join $dir LayerLineUtil.wish]]
-set auto_index(layerLineChange) [list source [file join $dir LayerLineUtil.wish]]
-set auto_index(projectionRecreate) [list source [file join $dir ProjectionUtil.wish]]
-set auto_index(projectionCreate) [list source [file join $dir ProjectionUtil.wish]]
-set auto_index(projectionClear) [list source [file join $dir ProjectionUtil.wish]]
-set auto_index(projectionChange) [list source [file join $dir ProjectionUtil.wish]]
set auto_index(roiAreaCreateStart) [list source [file join $dir RoiAreaCreate.wish]]
set auto_index(roiAreaCreateMotion) [list source [file join $dir RoiAreaCreate.wish]]
set auto_index(roiAreaCreateEnd) [list source [file join $dir RoiAreaCreate.wish]]
set auto_index(splineCreate) [list source [file join $dir RoiAreaCreate.wish]]
set auto_index(knobShow) [list source [file join $dir RoiAreaCreate.wish]]
set auto_index(knobHide) [list source [file join $dir RoiAreaCreate.wish]]
-set auto_index(roiMultiAreaInfoSave) [list source [file join $dir RoiAreaFile.wish]]
-set auto_index(roiMultiAreaInfoLoad) [list source [file join $dir RoiAreaFile.wish]]
-set auto_index(roiAreaFileSave) [list source [file join $dir RoiAreaFile.wish]]
-set auto_index(roiAreaMoveStart) [list source [file join $dir RoiAreaMove.wish]]
-set auto_index(roiAreaMoveMotion) [list source [file join $dir RoiAreaMove.wish]]
-set auto_index(roiAreaMoveEnd) [list source [file join $dir RoiAreaMove.wish]]
-set auto_index(rectangleMove) [list source [file join $dir RoiAreaMove.wish]]
-set auto_index(lineMove) [list source [file join $dir RoiAreaMove.wish]]
-set auto_index(splineMove) [list source [file join $dir RoiAreaMove.wish]]
+set auto_index(display2BindingSet) [list source [file join $dir Display2Binding.wish]]
+set auto_index(display2MenuSet) [list source [file join $dir Display2Menu.wish]]
+set auto_index(menuFileCreate) [list source [file join $dir Display2Menu.wish]]
+set auto_index(menuSeqFileCreate) [list source [file join $dir Display2Menu.wish]]
+set auto_index(menuWindowCreate) [list source [file join $dir Display2Menu.wish]]
+set auto_index(menuInfoCreate) [list source [file join $dir Display2Menu.wish]]
+set auto_index(menuHelpCreate) [list source [file join $dir Display2Menu.wish]]
+set auto_index(menuExitCreate) [list source [file join $dir Display2Menu.wish]]
+set auto_index(roiRelatedObjectRecreate) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(menuRoiCreate) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(menuRoiCancelCommand) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(menuRoiSingleMultiTransform) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(menuMultiRoiOKCommand) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(menuMultiRoiAllDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(menuMultiRoiDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(menuEditCreate) [list source [file join $dir Display2MenuROI.wish]]
set auto_index(roiAreaResizeStart) [list source [file join $dir RoiAreaResize.wish]]
set auto_index(roiAreaResizeMotion) [list source [file join $dir RoiAreaResize.wish]]
set auto_index(roiAreaResizeEnd) [list source [file join $dir RoiAreaResize.wish]]
set auto_index(lineRotateCalc) [list source [file join $dir RoiAreaRotate.wish]]
set auto_index(splineRotate) [list source [file join $dir RoiAreaRotate.wish]]
set auto_index(splineRotateCalc) [list source [file join $dir RoiAreaRotate.wish]]
-set auto_index(roiAreaSelectStart) [list source [file join $dir RoiAreaSelect.wish]]
-set auto_index(roiAreaSelectMotion) [list source [file join $dir RoiAreaSelect.wish]]
-set auto_index(roiAreaSelectEnd) [list source [file join $dir RoiAreaSelect.wish]]
-set auto_index(roiAreaSelectOK) [list source [file join $dir RoiAreaSelect.wish]]
-set auto_index(roiAreaFFT) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(splineNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(rectangleNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(lineNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(pointDistance) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(pointDistance2) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(vectorAngle) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(coordGetInMainImageToReal) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(coordGetInMainImageToCanvas) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(dataGetInMainImageToReal) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(dataGetInMainImageToCanvas) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(pointSet) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(roiAreaZoomIn) [list source [file join $dir RoiAreaZoom.wish]]
-set auto_index(roiAreaZoomOut) [list source [file join $dir RoiAreaZoom.wish]]
-set auto_index(roiAreaZoom) [list source [file join $dir RoiAreaZoom.wish]]
-set auto_index(ScaleRecreate) [list source [file join $dir ScaleUtil.wish]]
-set auto_index(ScaleCreate) [list source [file join $dir ScaleUtil.wish]]
-set auto_index(ScaleClear) [list source [file join $dir ScaleUtil.wish]]
-set auto_index(ScaleChange) [list source [file join $dir ScaleUtil.wish]]
+set auto_index(roiMultiAreaInfoSave) [list source [file join $dir RoiAreaFile.wish]]
+set auto_index(roiMultiAreaInfoLoad) [list source [file join $dir RoiAreaFile.wish]]
+set auto_index(roiAreaFileSave) [list source [file join $dir RoiAreaFile.wish]]
+set auto_index(layerLineRecreate) [list source [file join $dir LayerLineUtil.wish]]
+set auto_index(layerLineCreate) [list source [file join $dir LayerLineUtil.wish]]
+set auto_index(layerLineClear) [list source [file join $dir LayerLineUtil.wish]]
+set auto_index(layerLineChange) [list source [file join $dir LayerLineUtil.wish]]
+set auto_index(fileOpenWinCreate) [list source [file join $dir Display2File.wish]]
+set auto_index(fileNewWinCreate) [list source [file join $dir Display2File.wish]]
+set auto_index(seqFileOpenWinCreate) [list source [file join $dir Display2File.wish]]
+set auto_index(seqFileNewWinCreate) [list source [file join $dir Display2File.wish]]
+set auto_index(display2DesktopSet) [list source [file join $dir Display2Desktop.wish]]
set auto_index(sectionInit) [list source [file join $dir SectionUtil.wish]]
set auto_index(sectionRecreateAll) [list source [file join $dir SectionUtil.wish]]
set auto_index(sectionRecreate) [list source [file join $dir SectionUtil.wish]]
set auto_index(sectionClearAll) [list source [file join $dir SectionUtil.wish]]
set auto_index(sectionClear) [list source [file join $dir SectionUtil.wish]]
set auto_index(sectionChange) [list source [file join $dir SectionUtil.wish]]
+set auto_index(ScaleRecreate) [list source [file join $dir ScaleUtil.wish]]
+set auto_index(ScaleCreate) [list source [file join $dir ScaleUtil.wish]]
+set auto_index(ScaleClear) [list source [file join $dir ScaleUtil.wish]]
+set auto_index(ScaleChange) [list source [file join $dir ScaleUtil.wish]]
set auto_index(unitCellRecreate) [list source [file join $dir UnitCell.wish]]
+set auto_index(display2MenuSet2) [list source [file join $dir Display2Menu2.wish]]
+set auto_index(roiAreaMoveStart) [list source [file join $dir RoiAreaMove.wish]]
+set auto_index(roiAreaMoveMotion) [list source [file join $dir RoiAreaMove.wish]]
+set auto_index(roiAreaMoveEnd) [list source [file join $dir RoiAreaMove.wish]]
+set auto_index(rectangleMove) [list source [file join $dir RoiAreaMove.wish]]
+set auto_index(lineMove) [list source [file join $dir RoiAreaMove.wish]]
+set auto_index(splineMove) [list source [file join $dir RoiAreaMove.wish]]
+set auto_index(display2ETCSet) [list source [file join $dir Display2ETCSet.wish]]
/* For Gaussian */
long flagWithInElastic;
float InElasticGaussian;
+
/* For Table */
long flagWithInElasticTable;
molecularEnvelope InElasticEnvTable;
+
/* Lorentzian */
long flagInElastic;
float InElastic;
float InElasticRing;
float InElasticRingPosition;
float InElasticRingWidth;
+
+ /* Phase Plate */
+ long flagAdditionalPhase;
+ float AdditionalPhase; // [radian]
} ctfInfo;
/* struct end */
extern void eosBayesGettopthreepoint(eosBayesDistribution* d, float* value, float* prob);
extern void eosBayesLiniearinterpolationofTopthreepoint(eosBayesDistribution* d, float* value, float* prob);
-
// Initialize Each distribution of eosBayesDistributions
extern void eosBayesDistributionInit(eosBayesDistribution* d,eosBayesDistributionInfo* info, int mode);
extern void lmrcImageFFTCenterChange(mrcImage* fft, int mode);
/* in lMrcImagePattersonFunctionCalc.c */
-extern void lmrcImagePattersonFunctionCalc(mrcImage* out, mrcImage* in);
+extern void lmrcImagePattersonFunctionCalc(mrcImage* out, mrcImage* outFFT, mrcImage* in);
extern void lmrcImagePattersonFunctionPrint(FILE* fpt, mrcImage* in, int mode);
+extern void lmrcImageGuinierFunctionPrint(FILE* fpt, mrcImage* in, int mode);
#include "ctfInfo.h"
extern void lmrcImageCorrelationWithCTFCompensation(mrcImage* out, mrcImage* in, ctfInfo* inctf, mrcImage* ref, ctfInfo* refctf, long mode);
# element name is the name of a command and the value is
# a script that loads the command.
-set auto_index(Blt_ActiveLegend) [list source [file join $dir bltGraph.wish]]
-set auto_index(Blt_Crosshairs) [list source [file join $dir bltGraph.wish]]
-set auto_index(Blt_ZoomStack) [list source [file join $dir bltGraph.wish]]
-set auto_index(Blt_PrintKey) [list source [file join $dir bltGraph.wish]]
-set auto_index(Blt_ClosestPoint) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::ActivateLegend) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::DeactivateLegend) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::HighlightLegend) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::Crosshairs) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::ZoomStack) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::PrintKey) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::ClosestPoint) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::AddBindTag) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::FindElement) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::FlashPoint) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::GetCoords) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::MarkPoint) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::DestroyZoomTitle) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::PopZoom) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::PushZoom) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::ResetZoom) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::ZoomTitleNext) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::ZoomTitleLast) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::SetZoomPoint) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::Box) [list source [file join $dir bltGraph.wish]]
-set auto_index(Blt_PostScriptDialog) [list source [file join $dir bltGraph.wish]]
-set auto_index(::blt::ResetPostScript) [list source [file join $dir bltGraph.wish]]
-set auto_index(Canvas) [list source [file join $dir Canvas.wish]]
-set auto_index(scrolledCanvas) [list source [file join $dir Canvas.wish]]
-set auto_index(colormapSet) [list source [file join $dir Colormap.wish]]
+set auto_index(NotSupportedCommand) [list source [file join $dir tclUtil.wish]]
+set auto_index(debugPrint) [list source [file join $dir tclUtil.wish]]
+set auto_index(fileSelect) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectResources) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectBindings) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectList) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectOK) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectCancel) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectClick) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectTake) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileSelectComplete) [list source [file join $dir fileSelect.wish]]
+set auto_index(fileCanBeOverwritten) [list source [file join $dir fileUtil.wish]]
+set auto_index(relativePathGet) [list source [file join $dir fileUtil.wish]]
set auto_index(CommandEntry) [list source [file join $dir CommandEntry.wish]]
set auto_index(CommandEntryWithSelection) [list source [file join $dir CommandEntry.wish]]
set auto_index(CommandEntryWithSelectionEntrySet) [list source [file join $dir CommandEntry.wish]]
set auto_index(CommandEntryWithUpDown) [list source [file join $dir CommandEntry.wish]]
set auto_index(CommandEntryWithUpDownUp) [list source [file join $dir CommandEntry.wish]]
set auto_index(CommandEntryWithUpDownDown) [list source [file join $dir CommandEntry.wish]]
-set auto_index(eosCommandExecute) [list source [file join $dir commandUtil.wish]]
set auto_index(::CTF::Init) [list source [file join $dir ctfInfo.wish]]
set auto_index(::CTF::Win) [list source [file join $dir ctfInfo.wish]]
set auto_index(::CTF::ctfInfoGraphInfoFrameCreate) [list source [file join $dir ctfInfo.wish]]
set auto_index(::CTF::ctfInfoScatteringCalc) [list source [file join $dir ctfInfo.wish]]
set auto_index(::CTF::ctfInfoListGet) [list source [file join $dir ctfInfo.wish]]
set auto_index(::CTF::ctfInfoAppend) [list source [file join $dir ctfInfo.wish]]
-set auto_index(defaultLoad) [list source [file join $dir defaultLoad.wish]]
-set auto_index(defaultLoadProcTemplate) [list source [file join $dir defaultLoad.wish]]
-set auto_index(fileSaveSureWin) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveSureOK) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveSureCancel) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveSureWinResources) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSave) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveResources) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveBindings) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveList) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveOK) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveCancel) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveClick) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveTake) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSaveComplete) [list source [file join $dir fileSave.wish]]
-set auto_index(fileSelect) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectResources) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectBindings) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectList) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectOK) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectCancel) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectClick) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectTake) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileSelectComplete) [list source [file join $dir fileSelect.wish]]
-set auto_index(fileCanBeOverwritten) [list source [file join $dir fileUtil.wish]]
-set auto_index(relativePathGet) [list source [file join $dir fileUtil.wish]]
+set auto_index(seqFileTemplateChange) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelect) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectBindings) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectList) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileTemplateSelectOK) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileTemplateSelectComplete) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectOK) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectComplete) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectPrev) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectNext) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectCancel) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectClick) [list source [file join $dir seqFileSelect.wish]]
+set auto_index(seqFileSelectTake) [list source [file join $dir seqFileSelect.wish]]
set auto_index(bltResetBindings) [list source [file join $dir graphFeature.wish]]
set auto_index(bltActivateLegend) [list source [file join $dir graphFeature.wish]]
set auto_index(SetActiveLegend) [list source [file join $dir graphFeature.wish]]
set auto_index(SetZoom) [list source [file join $dir graphFeature.wish]]
set auto_index(SetZoomX) [list source [file join $dir graphFeature.wish]]
set auto_index(SetPrint) [list source [file join $dir graphFeature.wish]]
-set auto_index(seqFileTemplateChange) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelect) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectBindings) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectList) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileTemplateSelectOK) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileTemplateSelectComplete) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectOK) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectComplete) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectPrev) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectNext) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectCancel) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectClick) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(seqFileSelectTake) [list source [file join $dir seqFileSelect.wish]]
-set auto_index(NotSupportedCommand) [list source [file join $dir tclUtil.wish]]
-set auto_index(debugPrint) [list source [file join $dir tclUtil.wish]]
set auto_index(CheckButtonsCreateWithPack) [list source [file join $dir VariousButton.wish]]
set auto_index(RadioButtonsCreateWithPack) [list source [file join $dir VariousButton.wish]]
set auto_index(RadioButtonsCreateWithPackWithCommand) [list source [file join $dir VariousButton.wish]]
set auto_index(RadioButtonsCreate) [list source [file join $dir VariousButton.wish]]
set auto_index(CheckButtonsCreate) [list source [file join $dir VariousButton.wish]]
+set auto_index(eosCommandExecute) [list source [file join $dir commandUtil.wish]]
+set auto_index(defaultLoad) [list source [file join $dir defaultLoad.wish]]
+set auto_index(defaultLoadProcTemplate) [list source [file join $dir defaultLoad.wish]]
+set auto_index(Canvas) [list source [file join $dir Canvas.wish]]
+set auto_index(scrolledCanvas) [list source [file join $dir Canvas.wish]]
+set auto_index(colormapSet) [list source [file join $dir Colormap.wish]]
+set auto_index(Blt_ActiveLegend) [list source [file join $dir bltGraph.wish]]
+set auto_index(Blt_Crosshairs) [list source [file join $dir bltGraph.wish]]
+set auto_index(Blt_ZoomStack) [list source [file join $dir bltGraph.wish]]
+set auto_index(Blt_PrintKey) [list source [file join $dir bltGraph.wish]]
+set auto_index(Blt_ClosestPoint) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::ActivateLegend) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::DeactivateLegend) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::HighlightLegend) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::Crosshairs) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::ZoomStack) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::PrintKey) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::ClosestPoint) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::AddBindTag) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::FindElement) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::FlashPoint) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::GetCoords) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::MarkPoint) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::DestroyZoomTitle) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::PopZoom) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::PushZoom) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::ResetZoom) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::ZoomTitleNext) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::ZoomTitleLast) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::SetZoomPoint) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::Box) [list source [file join $dir bltGraph.wish]]
+set auto_index(Blt_PostScriptDialog) [list source [file join $dir bltGraph.wish]]
+set auto_index(::blt::ResetPostScript) [list source [file join $dir bltGraph.wish]]
+set auto_index(fileSaveSureWin) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveSureOK) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveSureCancel) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveSureWinResources) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSave) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveResources) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveBindings) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveList) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveOK) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveCancel) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveClick) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveTake) [list source [file join $dir fileSave.wish]]
+set auto_index(fileSaveComplete) [list source [file join $dir fileSave.wish]]
--- /dev/null
+all:
+ for i in $(SOURCE); \
+ do \
+ echo $$i; \
+ $(CD) $$i; \
+ $(MAKE) all; \
+ $(CD) ..; \
+ done
+
+install:
+ for i in $(SOURCE);\
+ do \
+ $(CD) $$i; $(MAKE) install; $(CD) ..; \
+ done
+
+debug:
+ for i in $(SOURCE); \
+ do \
+ echo $$i; \
+ $(CD) $$i; \
+ $(MAKE) debug; \
+ $(CD) ..; \
+ done
+
+install-debug:
+ for i in $(SOURCE);\
+ do \
+ $(CD) $$i; $(MAKE) install-debug; $(CD) ..; \
+ done
+
+clean:
+ for i in $(SOURCE);\
+ do \
+ $(CD) $$i; $(MAKE) clean; $(CD) ..; \
+ done
+
+put:
+ for i in $(SOURCE);\
+ do \
+ $(CD) $$i; $(MAKE) put; $(CD) ..; \
+ done
+
+depend: check
+ for i in $(SOURCE);\
+ do \
+ $(CD) $$i; $(MAKE) depend; $(CD) ..; \
+ done
+
+check::
+ @if [ ! -d $(EOS_HOME)/lib ] ; then \
+ mkdir $(EOS_HOME)/lib ; \
+ fi
+ @if [ ! -d $(EOS_HOME)/include ] ; then \
+ mkdir $(EOS_HOME)/include ; \
+ fi
+ @for i in $(SOURCE);\
+ do \
+ $(CD) $$i; \
+ dotSourceInMakefileCreate ./ $$i $(WORLDNAME); \
+ $(RM) -f Makefile; \
+ $(CP) ../../Config/Template/$(WORLDNAME)ClassTemplate.Dir/Makefile Makefile; \
+ $(CD) Config; \
+ $(RM) -f Target.inc; \
+ $(CP) ../../../Config/Template/$(WORLDNAME)ClassTemplate.Dir/Config/Target.inc Target.inc; \
+ $(CD) ..; \
+ $(MAKE) check; \
+ $(CD) ..; \
+ done
+
+backup::
+ @cd ../..; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/Config ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/Makefile ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/.[A-z]*
+ @for i in $(SOURCE);\
+ do \
+ $(CD) $$i; $(MAKE) backup; $(CD) ..; \
+ done
+
+backup-all::
+ @cd ../..; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/Config ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/Makefile ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/.[A-z]*
+ @for i in $(SOURCE);\
+ do \
+ $(CD) $$i; $(MAKE) backup-all; $(CD) ..; \
+ done
+
+distribute::
+ @cd ../..; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/Config ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/Makefile ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/.[A-z]*
+ @for i in $(SOURCE);\
+ do \
+ $(CD) $$i; $(MAKE) distribute; $(CD) ..; \
+ done
+
+distribute-all::
+ @cd ../..; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/Config ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/Makefile ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/.[A-z]*
+ @for i in $(SOURCE);\
+ do \
+ $(CD) $$i; $(MAKE) distribute-all; $(CD) ..; \
+ done
+
/* For Gaussian */
long flagWithInElastic;
float InElasticGaussian;
+
/* For Table */
long flagWithInElasticTable;
molecularEnvelope InElasticEnvTable;
+
/* Lorentzian */
long flagInElastic;
float InElastic;
float InElasticRing;
float InElasticRingPosition;
float InElasticRingWidth;
+
+ /* Phase Plate */
+ long flagAdditionalPhase;
+ float AdditionalPhase; // [radian]
} ctfInfo;
/* struct end */
extern void lmrcImageFFTCenterChange(mrcImage* fft, int mode);
/* in lMrcImagePattersonFunctionCalc.c */
-extern void lmrcImagePattersonFunctionCalc(mrcImage* out, mrcImage* in);
+extern void lmrcImagePattersonFunctionCalc(mrcImage* out, mrcImage* outFFT, mrcImage* in);
extern void lmrcImagePattersonFunctionPrint(FILE* fpt, mrcImage* in, int mode);
+extern void lmrcImageGuinierFunctionPrint(FILE* fpt, mrcImage* in, int mode);
#include "ctfInfo.h"
extern void lmrcImageCorrelationWithCTFCompensation(mrcImage* out, mrcImage* in, ctfInfo* inctf, mrcImage* ref, ctfInfo* refctf, long mode);
extern void lmrcImageFFTCenterChange(mrcImage* fft, int mode);
/* in lMrcImagePattersonFunctionCalc.c */
-extern void lmrcImagePattersonFunctionCalc(mrcImage* out, mrcImage* in);
+extern void lmrcImagePattersonFunctionCalc(mrcImage* out, mrcImage* outFFT, mrcImage* in);
extern void lmrcImagePattersonFunctionPrint(FILE* fpt, mrcImage* in, int mode);
+extern void lmrcImageGuinierFunctionPrint(FILE* fpt, mrcImage* in, int mode);
#include "ctfInfo.h"
extern void lmrcImageCorrelationWithCTFCompensation(mrcImage* out, mrcImage* in, ctfInfo* inctf, mrcImage* ref, ctfInfo* refctf, long mode);
#%Z%
*/
static char __sccs_id[] = "%Z%lmrcImagePattersonFunctionCalc ver%I%; Date:%D% %Z%";
-
+#define DEBUG
+#include "genUtil.h"
#include "../inc/mrcImage.h"
+#include "Memory.h"
void
-lmrcImagePattersonFunctionCalc(mrcImage* out, mrcImage* in)
+lmrcImagePattersonFunctionCalc(mrcImage* out, mrcImage* outfft, mrcImage* in)
{
mrcImage fft;
- int X, Y, Z;
+ mrcImage powfft;
+ mrcImageParaTypeReal X, Y, Z;
double pow;
+ DEBUGPRINT("lmrcImagePattersonFunctionCalc");
lmrcImageFFT(&fft, in, 0);
+ powfft.Header = fft.Header;
+ mrcInit(&powfft, NULL);
- for(Z=-fft.HeaderN.z/2; Z< fft.HeaderN.z/2; Z++) {
- for(Y=-fft.HeaderN.y/2; Y< fft.HeaderN.y/2; Y++) {
- for(X=0; X<=fft.HeaderN.x/2; X++) {
+ for(Z=-fft.HeaderN.z/2.0; Z< fft.HeaderN.z/2.0; Z++) {
+ for(Y=-fft.HeaderN.y/2.0; Y< fft.HeaderN.y/2.0; Y++) {
+ for(X=0; X<= fft.HeaderN.x/2.0; X++) {
mrcPixelDataGet(&fft, X, Y, Z, &pow, mrcPixelPow, mrcPixelHowNearest);
- mrcPixelDataSet(&fft, X, Y, Z, pow, mrcPixelRePart);
- mrcPixelDataSet(&fft, X, Y, Z, 0, mrcPixelImPart);
+ mrcPixelDataSet(&powfft, X, Y, Z, pow, mrcPixelRePart);
+ mrcPixelDataSet(&powfft, X, Y, Z, 0, mrcPixelImPart);
}
}
}
- lmrcImageFFT(out, &fft, 0);
+ lmrcImageFFT(out, &powfft, 0);
mrcImageFree(&fft, "in lmrcImagePattersonFunction\n");
+ *outfft = powfft;
}
void
lmrcImagePattersonFunctionPrint(FILE* fpt, mrcImage* pat, int mode)
{
- int x;
+ int x, y, z, ir;
double data;
+ double r;
+ double* patData;
+ int* patDataCount;
- for(x=0; x<=pat->HeaderN.x/2; x++) {
- mrcPixelDataGet(pat, x, 0, 0, &data, mrcPixelRePart, mrcPixelHowNearest);
- fprintf(fpt, "%d %f %f\n", x, x*pat->HeaderLength.x, data);
- }
+ patData = memoryAllocate(sizeof(double)*(pat->HeaderN.x/2+1), "in ");
+ patDataCount = memoryAllocate(sizeof(int)*(pat->HeaderN.x/2+1), "in ");
+
+ for(ir=0; ir<pat->HeaderN.x/2; ir++) {
+ patData[ir] = 0;
+ patDataCount[ir] = 0;
+ }
+
+ for(z=0; z<pat->HeaderN.z; z++) {
+ for(y=0; y<pat->HeaderN.y; y++) {
+ for(x=0; x<pat->HeaderN.x; x++) {
+ mrcPixelDataGet(pat, x, y, z, &data, mrcPixelRePart, mrcPixelHowNearest);
+ r = sqrt(SQR(MIN(x,pat->HeaderN.x-x-1))+SQR(MIN(y,pat->HeaderN.y-y-1))+SQR(MIN(z,pat->HeaderN.z-z-1)));
+ ir = MIN((int)(r+0.5), pat->HeaderN.x/2);
+ patData[ir] += data;
+ patDataCount[ir]++;
+ }
+ }
+ }
+
+ for(ir=0; ir<pat->HeaderN.x/2; ir++) {
+ if(0<patDataCount[ir]) {
+ fprintf(fpt, "%d %f %f %d\n", ir, ir*pat->HeaderLength.x, patData[ir]/patDataCount[ir], patDataCount[ir]);
+ } else {
+ fprintf(fpt, "%d %f %f %d\n", ir, ir*pat->HeaderLength.x, patData[ir], patDataCount[ir]);
+ }
+ }
+}
+
+void
+lmrcImageGuinierFunctionPrint(FILE* fpt, mrcImage* guinier, int mode)
+{
+ int x, y, z, ir;
+ double data;
+ double r;
+ double* guinierData;
+ int* guinierDataCount;
+
+ guinierData = memoryAllocate(sizeof(double)*(guinier->HeaderN.x/2+1), "in ");
+ guinierDataCount = memoryAllocate(sizeof(int)*(guinier->HeaderN.x/2+1), "in ");
+
+ for(ir=0; ir<guinier->HeaderN.x/2; ir++) {
+ guinierData[ir] = 0;
+ guinierDataCount[ir] = 0;
+ }
+
+ for(z=-guinier->HeaderN.z/2.0; z<guinier->HeaderN.z/2.0; z++) {
+ for(y=-guinier->HeaderN.y/2.0; y<guinier->HeaderN.y/2.0; y++) {
+ for(x=-guinier->HeaderN.x/2.0; x<guinier->HeaderN.x/2.0; x++) {
+ mrcPixelDataGet(guinier, x, y, z, &data, mrcPixelRePart, mrcPixelHowNearest);
+ r = sqrt(SQR(x/(double)guinier->HeaderN.x)+SQR(y/(double)guinier->HeaderN.y)+SQR(z/(double)guinier->HeaderN.z))*guinier->HeaderN.x;
+ ir = MIN((int)(r+0.5), guinier->HeaderN.x/2);
+ guinierData[ir] += data;
+ guinierDataCount[ir]++;
+ }
+ }
+ }
+
+ for(ir=0; ir<guinier->HeaderN.x/2; ir++) {
+ if(0<guinierDataCount[ir]) {
+ fprintf(fpt, "%d %f %f %f %d\n", ir, ir/(guinier->HeaderN.x*guinier->HeaderLength.x), SQR(ir/(guinier->HeaderN.x*guinier->HeaderLength.x)), guinierData[ir]/guinierDataCount[ir], guinierDataCount[ir]);
+ } else {
+ fprintf(fpt, "%d %f %f %f %d\n", ir, ir/(guinier->HeaderN.x*guinier->HeaderLength.x), SQR(ir/(guinier->HeaderN.x*guinier->HeaderLength.x)), guinierData[ir], guinierDataCount[ir]);
+ }
+ }
}
Raw \
Socket \
SpecialNumber \
-String \
Vector \
dummy \
eosBayes \
eosList \
eosPThread \
eosPoint \
+eosString \
genUtil \
#LastSource
--- /dev/null
+all:
+ for i in $(SOURCE); \
+ do \
+ echo "---- $$i ----" ; \
+ $(CD) $$i; $(MAKE) all; $(CD) ..; \
+ done
+
+install:
+ for i in $(SOURCE);\
+ do \
+ echo "---- $$i ----" ; \
+ $(CD) $$i; $(MAKE) install; $(CD) ..; \
+ done
+
+debug:
+ for i in $(SOURCE); \
+ do \
+ echo "---- $$i ----" ; \
+ $(CD) $$i; $(MAKE) debug; $(CD) ..; \
+ done
+
+install-debug:
+ for i in $(SOURCE);\
+ do \
+ echo "---- $$i ----" ; \
+ $(CD) $$i; $(MAKE) install-debug; $(CD) ..; \
+ done
+
+clean:
+ for i in $(SOURCE);\
+ do \
+ echo "---- $$i ----" ; \
+ $(CD) $$i; $(MAKE) clean; $(CD) ..; \
+ done
+
+depend: check
+ for i in $(SOURCE);\
+ do \
+ echo "---- $$i ----" ; \
+ $(CD) $$i; $(MAKE) depend; $(CD) ..; \
+ done
+
+check::
+ @for i in $(SOURCE);\
+ do \
+ echo "---- $$i ----" ; \
+ $(CD) $$i; \
+ dotSourceInMakefileCreate ./ $$i $(CLASSNAME); \
+ $(RM) -f Makefile; \
+ $(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/Makefile Makefile; \
+ $(CD) Config; \
+ $(RM) -f Target.inc; \
+ $(CP) ../../../../Config/Template/$(WORLDNAME)Template.Dir/Config/Target.inc Target.inc; \
+ $(CD) ..; \
+ $(MAKE) check; \
+ $(CD) ..; \
+ done
+
+backup::
+ @cd ../../.. ; \
+ echo $(CLASSNAME); \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/Config; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/.[A-z]*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/Makefile
+ for i in $(SOURCE);\
+ do \
+ $(CD) $$i; \
+ $(MAKE) backup; \
+ $(CD) ..; \
+ done
+
+backup-all::
+ @cd ../../.. ; \
+ echo $(CLASSNAME); \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/Config; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/.[A-z]*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/Makefile
+ for i in $(SOURCE);\
+ do \
+ $(CD) $$i; \
+ $(MAKE) backup-all; \
+ $(CD) ..; \
+ done
+
+distribute::
+ @cd ../../.. ; \
+ echo $(CLASSNAME); \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/Config; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/Makefile
+ @echo $(CLASSNAME); \
+ for i in $(SOURCE);\
+ do \
+ $(CD) $$i; $(MAKE) distribute; $(CD) ..; \
+ done
+
+distribute-all::
+ @cd ../../.. ; \
+ echo $(CLASSNAME); \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/Config; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/Makefile
+ @echo $(CLASSNAME); \
+ for i in $(SOURCE); \
+ do \
+ $(CD) $$i; $(MAKE) distribute-all; $(CD) ..; \
+ done
+
--- /dev/null
+include ../../Config/Define.inc
+include ../Config/Define.inc
+include Config/Define.inc
+include .Source
+
+include Config/Target.inc
+++ /dev/null
-X86MAC64/pow2nn.sharedo
+++ /dev/null
-X86MAC64/pow2nn.sharedo
<H2>Information from source codes</H2>
</A>
<PRE>
-../src/eosBayesCondition.c:
-
-../src/eosBayesDistributionInit.c:
-
-../src/eosBayesDistributionInitialProbabilitySet.c:
-
-../src/eosBayesEstimation.c:
-
-../src/eosBayesFree.c:
-
-../src/eosBayesParameterOfMaxPosterior.c:
-
-../src/eosBayesRead.c:
-
-../src/eosBayesWrite.c:
-
-../src/eosBayesflag.c:
-
-../src/leosBayesInit.c:
</PRE>
<HR>
<A NAME="include">
float probofmaxposterior;
int iofmaxposterior;
int resetflag;
+ int rangechangeflag;
+ float percentageofrange;
+ int nofpartitions;
int maxposteriorflag;
int constantflag;
eosBayesDistributionRefinementMode refmode;
extern void eosBayesDistributionInitialProbabilitySet(eosBayesDistribution* d, eosBayesDistributionInfo* info, int mode);
extern void eosBayesProbabilityReset(FILE* fptIn,eosBayes* d, int n, int mode);
extern void eosBayesProbabilitysetLinear(eosBayesDistribution* d, float a, float b);
+extern void eosBayesProbabilityRangeChange(eosBayes* d, int mode);
/* eosBayesEstimation.c */
extern void eosBayesEstimation(eosBayes* d, int mode);
// 0 min0 max0 delta0 n0 out.prior[0].prob[0] ...... prob[n-1]
// 1 min1 max1 delta1 n1 out.prior[1].prob[0] ...... prob[n-1]
-extern void DistributionChangeCheck(eosBayes* d, int mode);
+extern void DistributionChangeCheck(eosBayes* d, int count, int mode);
extern void LikelihoodChangeCheck(eosBayes* d, int count, int mode);
//FileFoemat
//min max delta n
extern void eosBayesFree(eosBayes* d);
extern void eosBayesMaxposteriorflagSet(eosBayes* d, int Distnum);
-
+extern void eosBayesRangeChangeflagSet(eosBayes*d, int Distnum, float percentageofrange, int nofpartitions);
#endif /* EOS_BAYES_H */
</PRE>
--- /dev/null
+include ../Config/Define.inc
+include Config/Define.inc
+include .Source
+
+include Config/Target.inc
WORLDNAME=Tools
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-dyld: Library not loaded: /Users/tacyas/Eos/util/lib:/opt/X11/lib/libtk8.6.dylib
- Referenced from: /Users/tacyas/Eos/src/Tools/Integration/Display2/src/Display2
- Reason: image not found
+<HTML>
+<HEAD>
+<TITLE>Display2</TITLE>
+</HEAD>
+<BODY>
+<H1>Display2</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: Display2
+Options:
+ [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Optional :Input:mrcImage
+ [-t[epmlate] Template (%d.roi ).as(String ) ] :Optional :Template for InputFile
+ [-H[ighForThres] ThresHigh (0.0 ).as(Real ) ] :Optional :HighThres
+ [-L[owForThres] ThresLow (0.0 ).as(Real ) ] :Optional :LowThres
+ [-Zoom Zoom (1.0 ).as(Real ) ] :Optional :Zoom for InputFile
+ [-Inverse ] :Optional :Inverse (HighValue(dark)<->LowValue(bright)) for InputFile
+ [-o[utput] Out (.EosLog ).as(String ) ] :Optional :OutputLogFile
+ [-def[ault] Default (~/.Eos/Display2).as(String ) ] :Optional :OutputLogFile
+ [-display geometry (:0.0 ).as(String ) ] :Optional :OutputLogFile
+ [-geometry display (1024x1024+0+0).as(String ) ] :Optional :OutputLogFile
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+New wish commands of Display2
+mrcInfoSet [z|min|max] value
+mrcInfoSet [log|pow]
+mrcInfoGet [Nx|Ny|Nz|Max|Min|Mean|Hist]
+</PRE>
+</BODY>
+</HTML>
-/bin/bash: ctfDisplay: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>ctfDisplay</TITLE>
+</HEAD>
+<BODY>
+<H1>ctfDisplay</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: ctfDisplay
+Options:
+ [-i[nput] inMRC (NULL ).as(inFile ) ] :Optional :Input:MRC(FFT)
+ [-o[utput] outCTF (stdout ).as(appendFile ) ] :Optional :Input/Output: ctfinfo
+ [-Rmax Rmax (0.2 ).as(Real ) ] :Optional :Rmax [A-1]
+ [-Imax Imax (0.2 ).as(Real ) ] :Optional :Intensity: min-max
+ [-Imin Imin (0.02 ).as(Real ) ] :Optional :Intensity: min-max
+ [-AutoRange ] :Optional :Intensity: min-max
+ [-Log ] :Optional :Log of Intensity
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+</PRE>
+</BODY>
+</HTML>
-/bin/bash: imagesView: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>imagesView</TITLE>
+</HEAD>
+<BODY>
+<H1>imagesView</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: imagesView
+Options:
+ [-i[nput] In (.roi ).as(String ) ] :Optional :Input: Suffixes for viewing
+ [-o[utput] Out (.imagesView).as(String ) ] :Optional :Output: FileViewCondition
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+Additional Usage
+This command for viewing images with a suffix
+</PRE>
+</BODY>
+</HTML>
-/bin/bash: ctfDeterminationByBayes: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>ctfDeterminationByBayes</TITLE>
+</HEAD>
+<BODY>
+<H1>ctfDeterminationByBayes</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: ctfDeterminationByBayes
+Options:
+ [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
+ [-i[nput]2 In2 (NULL ).as(inFile ) ] :Essential :InputDataFile
+ [-i[nput]3 In3 (NULL ).as(inFile ) ] :Essential :InputDataFile
+ [-i[nput]4 In4 (NULL ).as(inFileListNoOpen ) ] :Essential :InputDataFile
+ [-n[um] numDistribution (3 ).as(Integer )
+ numLikelihood (3 ).as(Integer ) ] :Essential :Integer
+ [-rmax rmax (250 ).as(Real ) ] :Optional :rmax[1/A]
+ [-rintermediate rintermediate (250 ).as(Real ) ] :Optional :rintermediate[1/A]
+ [-rfiestpeak rfirstpeak (0.001 ).as(Real ) ] :Optional :rfirstpeak[1/A]
+ [-rmin rmin (0 ).as(Real ) ] :Optional :rmin[1/A]
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+ [-MTFmode MTFmode (0 ).as(Integer ) ] :Optional :MTFmode
+ [-Ainmode Ainmode (0 ).as(Integer ) ] :Optional :Ainmode
+ [-Intensitymode Intensitymode (0 ).as(Integer ) ] :Optional :Intensitymode
+----- Additional Usage -----
+</PRE>
+</BODY>
+</HTML>
int j, nv, check, count, nitem;
nv = argc - i - 1;
nitem = 1 ;
- check = nv%nitem ;
- count = nv/nitem ;
- if(0!=check) { fprintf(stderr, "Variable Number is strange. The number must be %d-times. nv: %d i\n", nitem, nv); usage(argv[0]); exit(EXIT_FAILURE);}
- info->R = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- for(j=0; j<count; j++) {
- info->R[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagR=count;
- }
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("h") {
- usage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SCASE("html") {
- htmlBeforeUsage(argv[0]);
- usage(argv[0]);
- htmlAfterUsage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SDEFAULT {
- fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
- usage(argv[0]);
- exit(EXIT_FAILURE);
- break;
- }
- SSWITCHEND;
- }
- }
-}
int j, nv, check, count, nitem;
nv = argc - i - 1;
nitem = 1 ;
- check = nv%nitem ;
- count = nv/nitem ;
- if(0!=check) { fprintf(stderr, "Variable Number is strange. The number must be %d-times. nv: %d i\n", nitem, nv); usage(argv[0]); exit(EXIT_FAILURE);}
- info->R = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- for(j=0; j<count; j++) {
- info->R[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagR=count;
- }
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("h") {
- usage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SCASE("html") {
- htmlBeforeUsage(argv[0]);
- usage(argv[0]);
- htmlAfterUsage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SDEFAULT {
- fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
- usage(argv[0]);
- exit(EXIT_FAILURE);
- break;
- }
- SSWITCHEND;
- }
- }
-}
SOURCE=\
+eosPointCurvatureInfo \
eosPointProjector \
eosPointRotation \
-eosPointTracker \
#LastSource
--- /dev/null
+OBJECTNAME = eosPointCurvatureInfo
+EXTRA_LIB =
+EXTRA_CCOPTS =
+EXTRA_INC =
--- /dev/null
+# OptionControlFile
+# FileFormat
+"-i","-i[nput]","InputDataFile","Essential","1","1","In","inFile","NULL"
+"-o","-o[utput]","OutputDataFile","Essential","1","1","Out","outFile","NULL"
+"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
+"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
--- /dev/null
+install:
+ cd ../src; make install-doc; cd ../doc
--- /dev/null
+#ifndef CONFIG_H
+#define CONFIG_H
+
+#include "../inc/eosPointCurvatureInfo.h"
+
+#endif /* CONFIG_H */
--- /dev/null
+#ifndef EOSPOINTCURVATUREINFO_H
+#define EOSPOINTCURVATUREINFO_H
+#include <stdio.h>
+#include <stdlib.h>
+
+#define OPTION_FLAG '-'
+#define OPTION_FLAG_POS (0)
+#define OPTION_POS (1)
+
+
+
+
+typedef struct eosPointCurvatureInfoInfo {
+ long flagRedirect;
+
+ long flagIn;
+ char* In;
+ FILE* fptIn;
+
+ long flagOut;
+ char* Out;
+ FILE* fptOut;
+
+ long flagconfigFile;
+ char* configFile;
+ FILE* fptconfigFile;
+
+ long flagmode;
+ long mode;
+
+} eosPointCurvatureInfoInfo;
+#ifdef __cplusplus
+extern "C" {
+#endif
+extern void argCheck(eosPointCurvatureInfoInfo* info, int argc, char* avgv[]);
+extern void khorosInit(int argc, char* avgv[]);
+extern void init0(eosPointCurvatureInfoInfo* info);
+extern void init1(eosPointCurvatureInfoInfo* info);
+extern void usage(char* usage);
+extern void additionalUsage(void);
+extern void htmlBeforeUsage(char* usage);
+extern void htmlAfterUsage(char* usage);
+#ifdef __cplusplus
+};
+#endif
+#endif /* EOSPOINTCURVATUREINFO_H */
--- /dev/null
+include ../Config/Define.inc
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+
+EOSHOME=../../../../../
+DSTDIR=$(EOSHOME)/bin
+DSTDOC=$(EOSHOME)/doc
+DSTTAR=$(EOSHOME)/tar
+
+INCFILES =
+
+LIBFILES = \
+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
+
+LIBFILESDEBUG = \
+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
+
+SRCC = \
+ $(OBJECTNAME).c \
+ init.c \
+ argCheck.c \
+ usage.c \
+ util.c \
+
+SRCCXX = \
+ $(OBJECTNAME).cc \
+ init.cc \
+ argCheck.cc \
+ usage.cc \
+ util.cc \
+
+MODULES = \
+ $(OBJECTNAME).o \
+ init.o \
+ argCheck.o \
+ usage.o \
+ util.o \
+
+REALMODULES = \
+ $(OSTYPE)/$(OBJECTNAME).o \
+ $(OSTYPE)/init.o \
+ $(OSTYPE)/argCheck.o \
+ $(OSTYPE)/usage.o \
+ $(OSTYPE)/util.o
+
+MODULESDEBUG = \
+ $(OBJECTNAME).debugo \
+ init.debugo \
+ argCheck.debugo \
+ usage.debugo \
+ util.debugo \
+
+REALMODULESDEBUG = \
+ $(OSTYPE)/$(OBJECTNAME).debugo \
+ $(OSTYPE)/init.debugo \
+ $(OSTYPE)/argCheck.debugo \
+ $(OSTYPE)/usage.debugo \
+ $(OSTYPE)/util.debugo
+
+
+all: $(OSTYPE)/$(OBJECTNAME)
+ if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+
+debug: $(OSTYPE)/$(OBJECTNAME).debug
+
+cudagdb: $(OSTYPE)/$(OBJECTNAME).cudagdb
+
+
+$(OSTYPE)/$(OBJECTNAME)::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME) WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).debug::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).debug WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).cudagdb::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).cudagdb WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit
+
+edit:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsEdit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsEdit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsEdit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsEdit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsEdit OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+unedit:
+ @if [ -w $(OBJECTNAME).c ]; \
+ then \
+ sccsUnedit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are not editable"; \
+ fi
+ @if [ -w wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsUnedit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are not editable."; \
+ fi
+ @if [ -w ruby/$(OBJECTNAME).rb]; \
+ then \
+ cd ruby; sccsUnedit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsUnedit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsUnedit OptionControlFile; \
+ else \
+ echo "OptionControlFile are not editable."; \
+ fi
+
+report:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsReport $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsReport $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsReport $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ] ; \
+ then \
+ cd perl; sccsReport $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsReport OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+clean :
+ rm -f *.debugo $(OSTYPE)/*.debugo *.cudagdbo $(OSTYPE)/*.cudagdbo *.o $(OSTYPE)/*.o *.linkinfo $(OSTYPE)/*.linkinfo \
+ $(OSTYPE)/$(OBJECTNAME) $(OSTYPE)/*.$(OSTYPE) \
+ $(OSTYPE)/$(OBJECTNAME).debug $(OSTYPE)/*.$(OSTYPE).debug \
+ $(OSTYPE)/$(OBJECTNAME).cudagdb $(OSTYPE)/*.$(OSTYPE).cudagdb \
+ $(OSTYPE)/$(OBJECTNAME).linkinfo $(OSTYPE)/*.$(OSTYPE).linkinfo \
+ *.bak *.$(OSTYPE) core
+
+install: install-bin install-doc install-wish install-ruby install-shell install-perl
+ @if [ dummy$(KHOROS_KENGOBJ) != dummy ] ; \
+ then \
+ if [ -x $(KHOROS_KGENOBJ) ] ; \
+ then \
+ make install-khoros ; \
+ fi; \
+ fi
+
+install-bin:$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+
+$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME):$(OSTYPE)/$(OBJECTNAME) $(DSTDIR)/$(OBJECTNAME)
+ @echo ---- Installing to bin
+ @echo $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+ @if [ ! -d $(DSTDIR)/$(OSTYPE) ]; \
+ then \
+ mkdir $(DSTDIR)/$(OSTYPE); \
+ fi
+ @if [ -x $(OSTYPE)/$(OBJECTNAME) ]; \
+ then \
+ echo "Compilation is complete"; \
+ $(RM) -f $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ $(CD) $(OSTYPE); $(INSTALL) -m 555 $(OBJECTNAME) ../$(DSTDIR)/$(OSTYPE); \
+ $(CHMOD) 555 ../$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ else \
+ echo "Compilation is incomplete. $(OBJECTNAME)"; \
+ fi
+ @echo ---- end of bin
+
+install-wish:
+ @if [ -d wish ]; \
+ then \
+ echo "---- Tcl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/wish/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/wish/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f wish/* $(DSTDIR)/wish/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/wish/$(OBJECTNAME)/* ;\
+ touch $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ $(CHMOD) 666 $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ echo "---- Tcl/Tk file Installed";\
+ fi
+
+install-ruby:
+ @if [ -d ruby ]; \
+ then \
+ echo "---- Ruby/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/ruby/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/ruby/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f ruby/* $(DSTDIR)/ruby/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/ruby/$(OBJECTNAME)/* ; \
+ echo "---- Ruby/Tk file Installed"; \
+ fi
+
+install-perl:
+ @if [ -d perl ]; \
+ then \
+ echo "---- Perl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/perl/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/perl/$(OBJECTNAME) ; \
+ fi; \
+ $(CP) -f perl/* $(DSTDIR)/perl/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/perl/$(OBJECTNAME)/* ; \
+ echo "---- Perl/Tk file Installed"; \
+ fi
+
+install-shell:
+ @if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi
+ @if [ -d shell ]; \
+ then \
+ echo "---- Shell file Install"; \
+ if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f shell/* $(DSTDIR)/shell/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/shell/$(OBJECTNAME)/*; \
+ echo "---- Shell file Installed"; \
+ fi
+
+install-khoros:
+ @echo Installing to khoros
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KGENOBJ) ]; \
+ then \
+ echo kgenobj;\
+ $(KHOROS_KGENOBJ) -tb Eos -oname $(OBJECTNAME) -type script -pane -cantata true -cat Eos -subcat $(CLASSNAME) -description $(OBJECTNAME) -bname $(OBJECTNAME) -form -lang ksh ; \
+ fi
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(KHOROS_KSET) -tb Eos -oname $(OBJECTNAME) -icon $(OBJECTNAME) ; \
+ fi
+ @if [ -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(CHMOD) -R 775 ../../../../../objects/script/$(OBJECTNAME) ; \
+ if [ $? ] ; \
+ then \
+ echo "-- setting khoros ---" ; \
+ if [ -d ../../../../../objects/script/$(OBJECTNAME)/uis/ ] ; \
+ then \
+ $(CD) ../../../../../objects/script/$(OBJECTNAME)/uis/ ; \
+ $(RM) -f $(OBJECTNAME).pane ; \
+ $(LN) -s ../../../../src/Tools/$(CLASSNAME)/$(OBJECTNAME)/src/$(OBJECTNAME).pane $(OBJECTNAME).pane; \
+ $(CD) ../../ ; \
+ $(CHMOD) -R 555 $(OBJECTNAME); \
+ else \
+ echo "../../../../../objects/script/$(OBJECTNAME)/uis/ does not exist."; \
+ fi ; \
+ else \
+ echo "Failed !!: Cannot chage mode in installing $(OBJECTNAME) to khoros system"; \
+ fi ; \
+ echo "-- end of khoros-installing"; \
+ fi
+
+install-doc: html
+ @if [ ! -d $(DSTDOC)/SmallTools ]; \
+ then \
+ mkdir $(DSTDOC)/SmallTools ;\
+ fi
+ @if [ -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ]; \
+ then \
+ $(RM) -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ;\
+ fi
+ @$(CP) $(OBJECTNAME).html $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f ../doc/*.html ]; \
+ then \
+ $(CP) ../doc/*.html $(DSTDOC)/SmallTools/ ;\
+ fi
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f $(DSTDOC)/SmallTools/Makefile ]; \
+ then \
+ cd $(DSTDOC)/SmallTools; $(MAKE); \
+ fi
+
+html: $(OBJECTNAME).html
+
+configFileRead:
+ @ctrl2configFileRead $(CLASSNAME) $(OBJECTNAME) ../Config/OptionControlFile
+
+$(OBJECTNAME).html: $(OSTYPE)/$(OBJECTNAME)
+ @echo creating html
+ @$(OSTYPE)/$(OBJECTNAME) -html 2> $(OBJECTNAME).html.tmp
+ @sed -e s/$(OSTYPE)\\/// $(OBJECTNAME).html.tmp > $(OBJECTNAME).html
+ @$(RM) $(OBJECTNAME).html.tmp
+
+$(DSTDIR)/$(OBJECTNAME): $(OSTYPE)/$(OBJECTNAME)
+ @ln -s -f ../sbin/MachineIndependent $@
+
+depend::
+ @echo dependency checking now
+ @if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+ rm -f $(OSTYPE)/.Depend
+ #echo C
+ @if [ -f $(OBJECTNAME).c ] ; \
+ then \
+ echo "dependency: *.c"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c >> $(OSTYPE)/.Depend ; \
+ fi
+ #echo CC
+ @if [ -f $(OBJECTNAME).cc ] ; \
+ then \
+ echo "dependency: *.cc"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).ccm ] ; \
+ then \
+ echo "dependency: *.ccm"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).cu ] ; \
+ then \
+ echo "dependency: *.cu"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu >> $(OSTYPE)/.Depend ; \
+ fi
+
+update:../Config/OptionControlFile
+ maketool $(CLASSNAME) $(OBJECTNAME) update
+
+updateNoAns:../Config/OptionControlFile
+ maketool $(CLASSNAME) $(OBJECTNAME) update N
+
+changeName::
+
+Test:$(OSTYPE)/$(OBJECTNAME) TestDir
+ @if [ -f test/Makefile ] ; \
+ then \
+ cd test; make ; \
+ else \
+ echo "No test Makefile"; \
+ fi
+
+TestDir::
+ @if [ ! -d test ] ; \
+ then \
+ echo "Creating test dir"; \
+ mkdir test; \
+ fi
+ @if [ ! -f test/Makefile ] ; \
+ then \
+ echo "Creating Makefile"; \
+ cd test; \
+ protoTestMakefileCreate; \
+ fi
+ @if [ ! -d test/data ]; \
+ then \
+ mkdir $(EOSHOME)/data/$(OBJECTNAME); \
+ cd test; \
+ ln -sf ../$(EOSHOME)/data/$(OBJECTNAME) data; \
+ fi
+
+tar::
+ cd $(DSTTAR); tar cvf Tools.$(CLASSNAME).$(OBJECTNAME).tar ../bin/$(OBJECTNAME) \
+ ../bin/*/$(OBJECTNAME).* \
+ ../src/Tools/$(CLASSNAME)/$(OBJECTNAME) \
+ ; gzip Tools.$(CLASSNAME).$(OBJECTNAME).tar
+
+-include $(OSTYPE)/.Depend
+-include ../Config/Target.inc
--- /dev/null
+../../../../../hostdepend/X86MAC64/src/Tools/eosPoint/eosPointCurvatureInfo/src/X86MAC64
\ No newline at end of file
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "eosString.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+argCheck(eosPointCurvatureInfoInfo* info, int argc, char* argv[])
+{
+ long i;
+ char s[1024];
+ FILE* fpt;
+
+ if(NULL==(fpt=fopen(".EosLog", "a+"))) {
+
+ } else {
+ for(i=0; i<argc; i++) {
+ fprintf(fpt, "%s ", argv[i]);
+ }
+ fprintf(fpt, "\n");
+ fclose(fpt);
+ }
+ for(i=1; i<argc; i++) {
+ if(OPTION_FLAG==argv[i][OPTION_FLAG_POS]) {
+ SSWITCH(argv[i]+OPTION_POS)
+ SCASE("i") {
+ if(i+1<argc) {
+ info->In = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagIn++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("o") {
+ if(i+1<argc) {
+ info->Out = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagOut++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("c") {
+ if(i+1<argc) {
+ info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagconfigFile++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("m") {
+ if(i+1<argc) {
+ info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagmode++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("h") {
+ usage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SCASE("html") {
+ htmlBeforeUsage(argv[0]);
+ usage(argv[0]);
+ htmlAfterUsage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SDEFAULT {
+ fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ break;
+ }
+ SSWITCHEND;
+ }
+ }
+}
--- /dev/null
+/*
+# eosPointCurvatureInfo : $Revision$
+# $Date$
+# Created by $Author$
+# Usage : eosPointCurvatureInfo
+# Attention
+# $Loccker$
+# $State$
+#
+*/
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#define GLOBAL_DECLARATION
+#include "../inc/config.h"
+
+#define DEBUG
+#include "genUtil.h"
+#include "Class.h"
+
+/*
+Example:
+typedef struct leosPointCurvatureInfoInfo {
+ float a;
+ int b;
+} leosPointCurvatureInfoInfo;
+
+typedef enum leosPointCurvatureInfoMode {
+ a=0,
+ b=1
+} leosPointCurvatureInfoMode;
+*/
+
+int
+main(int argc, char* argv[])
+{
+ eosPointCurvatureInfoInfo info;
+
+ init0(&info);
+ argCheck(&info, argc, argv);
+ init1(&info);
+
+ DEBUGPRINT("Program Start\n");
+
+ exit(EXIT_SUCCESS);
+}
+
+void
+additionalUsage()
+{
+ fprintf(stderr, "----- Additional Usage -----\n");
+}
--- /dev/null
+/bin/bash: eosPointCurvatureInfo: No such file or directory
--- /dev/null
+-F 4.3 1 0 52x1+0+0 +0+0 'Cantata' cantata
+ -M 1 1 52x1+0+0 +1+0 ' ' subform
+ -P 1 0 52x1+0+1 +0+0 ' ' eosPointCurvatureInfo
+ -D 1 0 9x1+0+0 'Options' _gui_options
+ -H 1 6x1+0+0 'License' 'license' $BOOTSTRAP/repos/license/License license
+ -E
+ -R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/eosPointCurvatureInfo
+ -H 1 5x1+41+0 'Help' 'help page' $EOS/src/Tools/eosPoint/eosPointCurvatureInfo/doc/eosPointCurvatureInfo.doc help
+ -Q 1 0 5.25x1+47+0 'Close'
+ -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'InputDataFile' i
+ -O 1 0 1 1 0 1 -1x1+1+3.000000 ' ' 'Out' 'OutputDataFile' o
+ -I 1 0 1 0 0 1 -1x1+1+4.500000 ' ' 'configFile' 'ConfigurationFile' c
+ -i 1 0 1 0 0 -1x1+1+6.000000 0 0 0 0 0 'mode' 'Mode' m
+ -E
+ -E
+-E
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "eosString.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+init0(eosPointCurvatureInfoInfo* info)
+{
+ info->fptIn = NULL; info->flagIn = 0;
+ info->fptOut = NULL; info->flagOut = 0;
+ info->fptconfigFile = NULL; info->flagconfigFile = 0;
+ info->mode = 0; info->flagmode = 0;
+}
+
+void
+init1(eosPointCurvatureInfoInfo* info)
+{
+ char s[1024];
+ int i;
+ if(!info->flagIn) {
+ stringGetFromFile(s, "In", stdin, stdout, 0);
+ info->In = stringGetNthWord(s, 1, " ,\t");
+ info->flagIn++;
+ }
+ if(info->flagIn) {
+ info->fptIn = fileOpen(info->In, "r");
+ }
+
+ if(!info->flagOut) {
+ stringGetFromFile(s, "Out", stdin, stdout, 0);
+ info->Out = stringGetNthWord(s, 1, " ,\t");
+ info->flagOut++;
+ }
+ if(info->flagOut) {
+ info->fptOut = fileOpen(info->Out, "w");
+ }
+
+ if(info->flagconfigFile) {
+ info->fptconfigFile = fileOpen(info->configFile, "r");
+ }
+
+ if(info->flagmode) {
+ }
+
+}
+#ifdef KHOROS
+#include <stdio.h>
+#include "bootstrap.h"
+#include "dataserv.h"
+#include "datamanip.h"
+extern void func_usage_additions(void);
+extern void func_free_args(kexit_status status, kaddr client_data);
+extern void func_get_args(kform* pane);
+
+void
+func_usage_additions(void)
+{
+}
+void
+func_free_args(kexit_status status, kaddr client_data)
+{
+}
+void
+func_get_args(kform* pane)
+{
+}
+void
+khorosInit(int argc, char* argv[])
+{
+ char* eospath;
+ char panepath[1024];
+ FILE* fpt;
+
+ eospath = getenv("EOS_HOME");
+ sprintf(panepath, "%s/src/Tools/eosPoint/eosPointCurvatureInfo/src/eosPointCurvatureInfo.pane", eospath);
+ khoros_initialize(argc, argv, "EOS");
+ fpt = fopen(panepath, "r"); if(NULL!=fpt) {
+ fclose(fpt);
+ kclui_initialize(panepath, KGEN_NONE, "EOS", "eosPointCurvatureInfo",
+ func_usage_additions,
+ func_get_args,
+ func_free_args);
+ }
+}
+#endif /* KHOROS */
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
+void
+usage(char* thisProgram)
+{
+ fprintf(stderr, "Usage: %s\n", thisProgram);
+ fprintf(stderr, "Options:\n");
+ fprintf(stderr, " [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile\n");
+ fprintf(stderr, " [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile\n");
+ fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");
+ fprintf(stderr, " [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode\n");
+ additionalUsage();
+}
+
+void
+htmlBeforeUsage(char* thisProgram)
+{
+ fprintf(stderr, "<HTML>\n");
+ fprintf(stderr, "<HEAD>\n");
+ fprintf(stderr, "<TITLE>%s</TITLE>\n", thisProgram);
+ fprintf(stderr, "</HEAD>\n");
+ fprintf(stderr, "<BODY>\n");
+ fprintf(stderr, "<H1>%s</H1>\n", thisProgram);
+ fprintf(stderr, "<H2>Usage</H2>\n");
+ fprintf(stderr, "<PRE>\n");
+}
+
+void
+htmlAfterUsage(char* thisProgram)
+{
+ fprintf(stderr, "</PRE>\n");
+ fprintf(stderr, "</BODY>\n");
+ fprintf(stderr, "</HTML>\n");
+}
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
-/bin/bash: eosPointProjector: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>eosPointProjector</TITLE>
+</HEAD>
+<BODY>
+<H1>eosPointProjector</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: eosPointProjector
+Options:
+ [-i[nput] In (stdin ).as(inFile::ASCII ) ] :Optional :Input: eosPoint
+ [-i[nput]t[ype] InType (3 ).as(Integer ) ] :Optional :Input: eosPointType
+ [-o[utput] Out (stdout ).as(outFile::ASCII ) ] :Optional :Output: eosPoint
+ [-o[utput]t[ype] OutType (3 ).as(Integer ) ] :Optional :Input: eosPointType
+ [-E[uler]A[ngle] EAMode (YOYS ).as(String )
+ Rot1 (0.0 ).as(Real )
+ Rot2 (0.0 ).as(Real )
+ Rot3 (0.0 ).as(Real ) ] :Optional :Input: EulerAngleMode Rot1 Rot2 Rot3
+ [-I[nput] InList (NULL ).as(inFileList::ASCII ) ] :Optional :Input: eosPointFileList
+ [-O[uput] OutList (NULL ).as(outFileList::ASCII ) ] :Optional :Output: eosPointFileList
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+>> eosPointFileType
+type-0: x y z
+type-1: x y z sig
+type-2: x y z sigx sigy sigz
+type-3: x y z sig sigx sigy sigz
+>> mode
+0: x-projection
+1: y-projection
+2: z-projection
+</PRE>
+</BODY>
+</HTML>
mrc2viff \
mrcImage2FFT \
pdb2ucd \
+raw2mrc \
test2 \
tgaInfo \
tiff2mrc \
-dyld: Library not loaded: @rpath/libcudart.6.5.dylib
- Referenced from: /Users/tacyas/Eos/src/Tools/filter/bin2mrc/src/bin2mrc
- Reason: image not found
+<HTML>
+<HEAD>
+<TITLE>bin2mrc</TITLE>
+</HEAD>
+<BODY>
+<H1>bin2mrc</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: bin2mrc
+Options:
+ [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
+ [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+</PRE>
+</BODY>
+</HTML>
-dyld: Library not loaded: /Applications/Eos.app/Eos/util/lib/libtiff.3.dylib
- Referenced from: /Users/tacyas/Eos/src/Tools/filter/tiff2mrc/src/tiff2mrc
- Reason: image not found
+<HTML>
+<HEAD>
+<TITLE>tiff2mrc</TITLE>
+</HEAD>
+<BODY>
+<H1>tiff2mrc</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: tiff2mrc
+Options:
+ [-i[nput] inFile (NULL ).as(inFile ) ] :Essential :InputDataFile
+ [-o[utput] outFile (NULL ).as(outFile ) ] :Essential :OutputDataFile
+ [-r[esolution] Resolution (1.0 ).as(Real ) ] :Optional :Resolution[A]
+ [-t[ime] time (1.0 ).as(Real ) ] :Optional :x OptimalTime
+ [-d[irnum] dirnum (0 ).as(Integer ) ] :Optional :tiffDirectoryNumber
+ [-I[nverse] ] :Optional :Black<->White
+ [-Signed ] :Optional :Original image is Signed or Not: Default unsigned
+ [-Offset Offset (0.0 ).as(Real ) ] :Optional :OffsetValue
+ [-Max Max (16 ).as(Real ) ] :Optional :MaxValue:2^Max
+ [-Min Min (1 ).as(Real ) ] :Optional :MinValue:2^Min: without 0
+ [-realMin realMin (0.0 ).as(Real ) ] :Optional :Real MinValue
+ [-realMax realMax (0.0 ).as(Real ) ] :Optional :Real MaxValue
+ [-realMaxBit realMaxBit (14 ).as(Real ) ] :Optional :Real MaxValue Bit
+ [-sin sinFile (NULL ).as(inFile ) ] :Optional :sin file from Zeiss
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-S[hrink] Shrink (8 ).as(Integer ) ] :Optional :ShrinkMode
+ [-M[ode] Mode (0 ).as(Integer ) ] :Optional :Mode: mrcMode: Def: if -m 0, -M 0. if -m 1 -M 2
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode: 0 (Direct), 1(Log10(65535/data))
+---- mode ----
+0x0000000f bits: Direct or Log
+0x000000f0 bits: Which Color
+ R: 00
+ G: 10
+ B: 20
+</PRE>
+</BODY>
+</HTML>
mrcImageMasking \
mrcImageMaskingByImage \
mrcImageMeanFreePathCalc \
+mrcImageMergeFFT \
mrcImageMergebyside \
mrcImageMirroring \
mrcImageModeChange \
mrcImageMasking \
mrcImageMaskingByImage \
mrcImageMeanFreePathCalc \
+mrcImageMergeFFT \
mrcImageMergebyside \
mrcImageMirroring \
mrcImageModeChange \
int j, nv, check, count, nitem;
nv = argc - i - 1;
nitem = 1 ;
- check = nv%nitem ;
- count = nv/nitem ;
- if(0!=check) { fprintf(stderr, "Variable Number is strange. The number must be %d-times. nv: %d i\n", nitem, nv); usage(argv[0]); exit(EXIT_FAILURE);}
- info->roiLine = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- for(j=0; j<count; j++) {
- info->roiLine[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagroiLine=count;
- }
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("x") {
- if(i+1<argc) {
- info->x = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagx++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("ddYmax") {
- if(i+1<argc) {
- info->ddYmax = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagddYmax++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("ddYmin") {
- if(i+1<argc) {
- info->ddYmin = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagddYmin++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("T") {
- if(i+1<argc) {
- info->T = stringGetNthIntegerData(argv[i+1], 1, " ,");
- i++;
- info->flagT++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("maxdY") {
- if(i+1<argc) {
- info->maxdY = stringGetNthIntegerData(argv[i+1], 1, " ,");
- i++;
- info->flagmaxdY++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("HR") {
- if(i+1<argc) {
- info->HeightRange = stringGetNthIntegerData(argv[i+1], 1, " ,");
- i++;
- info->flagHeightRange++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("RMaxX") {
- if(i+1<argc) {
- info->RMaxX = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagRMaxX++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("mag") {
- if(i+1<argc) {
- info->mag = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagmag++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("truePitch") {
- if(i+1<argc) {
- info->truePitch = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagtruePitch++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("PixelSize") {
- if(i+1<argc) {
- info->PixelSize = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagPixelSize++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("finaly") {
- if(i+1<argc) {
- info->finaly = stringGetNthIntegerData(argv[i+1], 1, " ,");
- i++;
- info->flagfinaly++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("Ignore") {
- if(i+1<argc) {
- info->Ignore = stringGetNthIntegerData(argv[i+1], 1, " ,");
- i++;
- info->flagIgnore++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("c") {
- if(i+1<argc) {
- info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
- i++;
- info->flagconfigFile++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("m") {
- if(i+1<argc) {
- info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
- i++;
- info->flagmode++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("h") {
- usage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SCASE("html") {
- htmlBeforeUsage(argv[0]);
- usage(argv[0]);
- htmlAfterUsage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SDEFAULT {
- fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
- usage(argv[0]);
- exit(EXIT_FAILURE);
- break;
- }
- SSWITCHEND;
- }
- }
-}
Options:
[-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
[-o[utput] Out (stdout ).as(outFile ) ] :Optional :OutputDataFile
- [-C[ontour] Contour (10 ).as(Real ) ] :Optional :ContourLevel: 10 5.533535e-322ach
+ [-C[ontour] Contour (10 ).as(Real ) ] :Optional :ContourLevel: 10 6.953123e-310ach
[-log Log (NULL ).as(appendFile ) ] :Optional :OutputDataFile
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
--- /dev/null
+OBJECTNAME = mrcImageMergeFFT
+EXTRA_LIB =
+EXTRA_CCOPTS =
+EXTRA_INC =
--- /dev/null
+# OptionControlFile
+# FileFormat
+"-i","-i[nput]","InputDataFile","Essential","1","1","In","inFile","NULL"
+"-o","-o[utput]","OutputDataFile","Essential","1","1","Out","outFile","NULL"
+"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
+"-n","-n","[pixel]","Optional","2","1","nx","Integer","0","2","ny","Integer","0"
+"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
--- /dev/null
+include ../../../Config/Define.inc
+include ../../Config/Define.inc
+include ../Config/Define.inc
+include Config/Define.inc
+
+all:
+ cd src; make all; cd ..
+
+install:
+ cd src; make install; cd ..
+
+
+putSF:
+ if [ -f private ] ; \
+ then \
+ echo "$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME) is private"; \
+ else \
+ cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE commit || cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE import src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME); \
+ fi
+
+put:
+ cd src; make put; cd ..
+
+clean:
+ cd src; make clean; cd ..
+
+depend:
+ cd src; make depend; cd ..
+
+check:
+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+ echo making directory; \
+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+ fi
+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
+ @$(RM) src/Makefile
+ @echo "New src/Makefile"
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+ @cd src; touch $(OSTYPE)/.Depend; make depend
+
+update:
+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+ echo making directory; \
+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+ fi
+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
+ @$(RM) src/Makefile
+ @echo "New src/Makefile"
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+ @cd src; touch $(OSTYPE)/.Depend; echo "Y" | make update
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit
+
+backup:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
+
+backup-all:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
+
+distribute:
+ cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+distribute-all:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+eosintroduce:
+ ${EOS_HOME}/sbin/eosintroduce ${WORLDNAME} ${CLASSNAME} ${OBJECTNAME} ./
+
+include Config/Target.inc
--- /dev/null
+install:
+ cd ../src; make install-doc; cd ../doc
--- /dev/null
+#ifndef CONFIG_H
+#define CONFIG_H
+
+#include "../inc/mrcImageMergeFFT.h"
+
+#endif /* CONFIG_H */
--- /dev/null
+#ifndef MRCIMAGEMERGEFFT_H
+#define MRCIMAGEMERGEFFT_H
+#include <stdio.h>
+#include <stdlib.h>
+
+#define OPTION_FLAG '-'
+#define OPTION_FLAG_POS (0)
+#define OPTION_POS (1)
+
+
+
+
+typedef struct mrcImageMergeFFTInfo {
+ long flagRedirect;
+
+ long flagIn;
+ char* In;
+ FILE* fptIn;
+
+ long flagOut;
+ char* Out;
+ FILE* fptOut;
+
+ long flagconfigFile;
+ char* configFile;
+ FILE* fptconfigFile;
+
+ long flagnx;
+ long nx;
+
+ long flagny;
+ long ny;
+
+ long flagmode;
+ long mode;
+
+} mrcImageMergeFFTInfo;
+#ifdef __cplusplus
+extern "C" {
+#endif
+extern void argCheck(mrcImageMergeFFTInfo* info, int argc, char* avgv[]);
+extern void khorosInit(int argc, char* avgv[]);
+extern void init0(mrcImageMergeFFTInfo* info);
+extern void init1(mrcImageMergeFFTInfo* info);
+extern void usage(char* usage);
+extern void additionalUsage(void);
+extern void htmlBeforeUsage(char* usage);
+extern void htmlAfterUsage(char* usage);
+#ifdef __cplusplus
+};
+#endif
+#endif /* MRCIMAGEMERGEFFT_H */
--- /dev/null
+include ../Config/Define.inc
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+
+EOSHOME=../../../../../
+DSTDIR=$(EOSHOME)/bin
+DSTDOC=$(EOSHOME)/doc
+DSTTAR=$(EOSHOME)/tar
+
+INCFILES =
+
+LIBFILES = \
+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
+
+LIBFILESDEBUG = \
+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
+
+SRCC = \
+ $(OBJECTNAME).c \
+ init.c \
+ argCheck.c \
+ usage.c \
+ util.c \
+
+SRCCXX = \
+ $(OBJECTNAME).cc \
+ init.cc \
+ argCheck.cc \
+ usage.cc \
+ util.cc \
+
+MODULES = \
+ $(OBJECTNAME).o \
+ init.o \
+ argCheck.o \
+ usage.o \
+ util.o \
+
+REALMODULES = \
+ $(OSTYPE)/$(OBJECTNAME).o \
+ $(OSTYPE)/init.o \
+ $(OSTYPE)/argCheck.o \
+ $(OSTYPE)/usage.o \
+ $(OSTYPE)/util.o
+
+MODULESDEBUG = \
+ $(OBJECTNAME).debugo \
+ init.debugo \
+ argCheck.debugo \
+ usage.debugo \
+ util.debugo \
+
+REALMODULESDEBUG = \
+ $(OSTYPE)/$(OBJECTNAME).debugo \
+ $(OSTYPE)/init.debugo \
+ $(OSTYPE)/argCheck.debugo \
+ $(OSTYPE)/usage.debugo \
+ $(OSTYPE)/util.debugo
+
+
+all: $(OSTYPE)/$(OBJECTNAME)
+ if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+
+debug: $(OSTYPE)/$(OBJECTNAME).debug
+
+cudagdb: $(OSTYPE)/$(OBJECTNAME).cudagdb
+
+
+$(OSTYPE)/$(OBJECTNAME)::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME) WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).debug::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).debug WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).cudagdb::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).cudagdb WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit
+
+edit:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsEdit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsEdit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsEdit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsEdit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsEdit OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+unedit:
+ @if [ -w $(OBJECTNAME).c ]; \
+ then \
+ sccsUnedit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are not editable"; \
+ fi
+ @if [ -w wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsUnedit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are not editable."; \
+ fi
+ @if [ -w ruby/$(OBJECTNAME).rb]; \
+ then \
+ cd ruby; sccsUnedit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsUnedit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsUnedit OptionControlFile; \
+ else \
+ echo "OptionControlFile are not editable."; \
+ fi
+
+report:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsReport $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsReport $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsReport $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ] ; \
+ then \
+ cd perl; sccsReport $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsReport OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+clean :
+ rm -f *.debugo $(OSTYPE)/*.debugo *.cudagdbo $(OSTYPE)/*.cudagdbo *.o $(OSTYPE)/*.o *.linkinfo $(OSTYPE)/*.linkinfo \
+ $(OSTYPE)/$(OBJECTNAME) $(OSTYPE)/*.$(OSTYPE) \
+ $(OSTYPE)/$(OBJECTNAME).debug $(OSTYPE)/*.$(OSTYPE).debug \
+ $(OSTYPE)/$(OBJECTNAME).cudagdb $(OSTYPE)/*.$(OSTYPE).cudagdb \
+ $(OSTYPE)/$(OBJECTNAME).linkinfo $(OSTYPE)/*.$(OSTYPE).linkinfo \
+ *.bak *.$(OSTYPE) core
+
+install: install-bin install-doc install-wish install-ruby install-shell install-perl
+ @if [ dummy$(KHOROS_KENGOBJ) != dummy ] ; \
+ then \
+ if [ -x $(KHOROS_KGENOBJ) ] ; \
+ then \
+ make install-khoros ; \
+ fi; \
+ fi
+
+install-bin:$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+
+$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME):$(OSTYPE)/$(OBJECTNAME) $(DSTDIR)/$(OBJECTNAME)
+ @echo ---- Installing to bin
+ @echo $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+ @if [ ! -d $(DSTDIR)/$(OSTYPE) ]; \
+ then \
+ mkdir $(DSTDIR)/$(OSTYPE); \
+ fi
+ @if [ -x $(OSTYPE)/$(OBJECTNAME) ]; \
+ then \
+ echo "Compilation is complete"; \
+ $(RM) -f $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ $(CD) $(OSTYPE); $(INSTALL) -m 555 $(OBJECTNAME) ../$(DSTDIR)/$(OSTYPE); \
+ $(CHMOD) 555 ../$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ else \
+ echo "Compilation is incomplete. $(OBJECTNAME)"; \
+ fi
+ @echo ---- end of bin
+
+install-wish:
+ @if [ -d wish ]; \
+ then \
+ echo "---- Tcl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/wish/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/wish/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f wish/* $(DSTDIR)/wish/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/wish/$(OBJECTNAME)/* ;\
+ touch $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ $(CHMOD) 666 $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ echo "---- Tcl/Tk file Installed";\
+ fi
+
+install-ruby:
+ @if [ -d ruby ]; \
+ then \
+ echo "---- Ruby/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/ruby/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/ruby/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f ruby/* $(DSTDIR)/ruby/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/ruby/$(OBJECTNAME)/* ; \
+ echo "---- Ruby/Tk file Installed"; \
+ fi
+
+install-perl:
+ @if [ -d perl ]; \
+ then \
+ echo "---- Perl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/perl/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/perl/$(OBJECTNAME) ; \
+ fi; \
+ $(CP) -f perl/* $(DSTDIR)/perl/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/perl/$(OBJECTNAME)/* ; \
+ echo "---- Perl/Tk file Installed"; \
+ fi
+
+install-shell:
+ @if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi
+ @if [ -d shell ]; \
+ then \
+ echo "---- Shell file Install"; \
+ if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f shell/* $(DSTDIR)/shell/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/shell/$(OBJECTNAME)/*; \
+ echo "---- Shell file Installed"; \
+ fi
+
+install-khoros:
+ @echo Installing to khoros
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KGENOBJ) ]; \
+ then \
+ echo kgenobj;\
+ $(KHOROS_KGENOBJ) -tb Eos -oname $(OBJECTNAME) -type script -pane -cantata true -cat Eos -subcat $(CLASSNAME) -description $(OBJECTNAME) -bname $(OBJECTNAME) -form -lang ksh ; \
+ fi
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(KHOROS_KSET) -tb Eos -oname $(OBJECTNAME) -icon $(OBJECTNAME) ; \
+ fi
+ @if [ -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(CHMOD) -R 775 ../../../../../objects/script/$(OBJECTNAME) ; \
+ if [ $? ] ; \
+ then \
+ echo "-- setting khoros ---" ; \
+ if [ -d ../../../../../objects/script/$(OBJECTNAME)/uis/ ] ; \
+ then \
+ $(CD) ../../../../../objects/script/$(OBJECTNAME)/uis/ ; \
+ $(RM) -f $(OBJECTNAME).pane ; \
+ $(LN) -s ../../../../src/Tools/$(CLASSNAME)/$(OBJECTNAME)/src/$(OBJECTNAME).pane $(OBJECTNAME).pane; \
+ $(CD) ../../ ; \
+ $(CHMOD) -R 555 $(OBJECTNAME); \
+ else \
+ echo "../../../../../objects/script/$(OBJECTNAME)/uis/ does not exist."; \
+ fi ; \
+ else \
+ echo "Failed !!: Cannot chage mode in installing $(OBJECTNAME) to khoros system"; \
+ fi ; \
+ echo "-- end of khoros-installing"; \
+ fi
+
+install-doc: html
+ @if [ ! -d $(DSTDOC)/SmallTools ]; \
+ then \
+ mkdir $(DSTDOC)/SmallTools ;\
+ fi
+ @if [ -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ]; \
+ then \
+ $(RM) -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ;\
+ fi
+ @$(CP) $(OBJECTNAME).html $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f ../doc/*.html ]; \
+ then \
+ $(CP) ../doc/*.html $(DSTDOC)/SmallTools/ ;\
+ fi
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f $(DSTDOC)/SmallTools/Makefile ]; \
+ then \
+ cd $(DSTDOC)/SmallTools; $(MAKE); \
+ fi
+
+html: $(OBJECTNAME).html
+
+configFileRead:
+ @ctrl2configFileRead $(CLASSNAME) $(OBJECTNAME) ../Config/OptionControlFile
+
+$(OBJECTNAME).html: $(OSTYPE)/$(OBJECTNAME)
+ @echo creating html
+ @$(OSTYPE)/$(OBJECTNAME) -html 2> $(OBJECTNAME).html.tmp
+ @sed -e s/$(OSTYPE)\\/// $(OBJECTNAME).html.tmp > $(OBJECTNAME).html
+ @$(RM) $(OBJECTNAME).html.tmp
+
+$(DSTDIR)/$(OBJECTNAME): $(OSTYPE)/$(OBJECTNAME)
+ @ln -s -f ../sbin/MachineIndependent $@
+
+depend::
+ @echo dependency checking now
+ @if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+ rm -f $(OSTYPE)/.Depend
+ #echo C
+ @if [ -f $(OBJECTNAME).c ] ; \
+ then \
+ echo "dependency: *.c"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c >> $(OSTYPE)/.Depend ; \
+ fi
+ #echo CC
+ @if [ -f $(OBJECTNAME).cc ] ; \
+ then \
+ echo "dependency: *.cc"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).ccm ] ; \
+ then \
+ echo "dependency: *.ccm"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).cu ] ; \
+ then \
+ echo "dependency: *.cu"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu >> $(OSTYPE)/.Depend ; \
+ fi
+
+update:../Config/OptionControlFile
+ maketool $(CLASSNAME) $(OBJECTNAME) update
+
+updateNoAns:../Config/OptionControlFile
+ maketool $(CLASSNAME) $(OBJECTNAME) update N
+
+changeName::
+
+Test:$(OSTYPE)/$(OBJECTNAME) TestDir
+ @if [ -f test/Makefile ] ; \
+ then \
+ cd test; make ; \
+ else \
+ echo "No test Makefile"; \
+ fi
+
+TestDir::
+ @if [ ! -d test ] ; \
+ then \
+ echo "Creating test dir"; \
+ mkdir test; \
+ fi
+ @if [ ! -f test/Makefile ] ; \
+ then \
+ echo "Creating Makefile"; \
+ cd test; \
+ protoTestMakefileCreate; \
+ fi
+ @if [ ! -d test/data ]; \
+ then \
+ mkdir $(EOSHOME)/data/$(OBJECTNAME); \
+ cd test; \
+ ln -sf ../$(EOSHOME)/data/$(OBJECTNAME) data; \
+ fi
+
+tar::
+ cd $(DSTTAR); tar cvf Tools.$(CLASSNAME).$(OBJECTNAME).tar ../bin/$(OBJECTNAME) \
+ ../bin/*/$(OBJECTNAME).* \
+ ../src/Tools/$(CLASSNAME)/$(OBJECTNAME) \
+ ; gzip Tools.$(CLASSNAME).$(OBJECTNAME).tar
+
+-include $(OSTYPE)/.Depend
+-include ../Config/Target.inc
--- /dev/null
+../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageMergeFFT/src/X86MAC64
\ No newline at end of file
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "eosString.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+argCheck(mrcImageMergeFFTInfo* info, int argc, char* argv[])
+{
+ long i;
+ char s[1024];
+ FILE* fpt;
+
+ if(NULL==(fpt=fopen(".EosLog", "a+"))) {
+
+ } else {
+ for(i=0; i<argc; i++) {
+ fprintf(fpt, "%s ", argv[i]);
+ }
+ fprintf(fpt, "\n");
+ fclose(fpt);
+ }
+ for(i=1; i<argc; i++) {
+ if(OPTION_FLAG==argv[i][OPTION_FLAG_POS]) {
+ SSWITCH(argv[i]+OPTION_POS)
+ SCASE("i") {
+ if(i+1<argc) {
+ info->In = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagIn++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("o") {
+ if(i+1<argc) {
+ info->Out = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagOut++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("c") {
+ if(i+1<argc) {
+ info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagconfigFile++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("n") {
+ if(i+2<argc) {
+ info->nx = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagnx++;
+ info->ny = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagny++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("m") {
+ if(i+1<argc) {
+ info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagmode++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("h") {
+ usage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SCASE("html") {
+ htmlBeforeUsage(argv[0]);
+ usage(argv[0]);
+ htmlAfterUsage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SDEFAULT {
+ fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ break;
+ }
+ SSWITCHEND;
+ }
+ }
+}
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "eosString.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+init0(mrcImageMergeFFTInfo* info)
+{
+ info->fptIn = NULL; info->flagIn = 0;
+ info->fptOut = NULL; info->flagOut = 0;
+ info->fptconfigFile = NULL; info->flagconfigFile = 0;
+ info->nx = 0; info->flagnx = 0;
+ info->ny = 0; info->flagny = 0;
+ info->mode = 0; info->flagmode = 0;
+}
+
+void
+init1(mrcImageMergeFFTInfo* info)
+{
+ char s[1024];
+ int i;
+ if(!info->flagIn) {
+ stringGetFromFile(s, "In", stdin, stdout, 0);
+ info->In = stringGetNthWord(s, 1, " ,\t");
+ info->flagIn++;
+ }
+ if(info->flagIn) {
+ info->fptIn = fileOpen(info->In, "r");
+ }
+
+ if(!info->flagOut) {
+ stringGetFromFile(s, "Out", stdin, stdout, 0);
+ info->Out = stringGetNthWord(s, 1, " ,\t");
+ info->flagOut++;
+ }
+ if(info->flagOut) {
+ info->fptOut = fileOpen(info->Out, "w");
+ }
+
+ if(info->flagconfigFile) {
+ info->fptconfigFile = fileOpen(info->configFile, "r");
+ }
+
+ if(info->flagnx) {
+ }
+
+ if(info->flagny) {
+ }
+
+ if(info->flagmode) {
+ }
+
+}
+#ifdef KHOROS
+#include <stdio.h>
+#include "bootstrap.h"
+#include "dataserv.h"
+#include "datamanip.h"
+extern void func_usage_additions(void);
+extern void func_free_args(kexit_status status, kaddr client_data);
+extern void func_get_args(kform* pane);
+
+void
+func_usage_additions(void)
+{
+}
+void
+func_free_args(kexit_status status, kaddr client_data)
+{
+}
+void
+func_get_args(kform* pane)
+{
+}
+void
+khorosInit(int argc, char* argv[])
+{
+ char* eospath;
+ char panepath[1024];
+ FILE* fpt;
+
+ eospath = getenv("EOS_HOME");
+ sprintf(panepath, "%s/src/Tools/mrcImage/mrcImageMergeFFT/src/mrcImageMergeFFT.pane", eospath);
+ khoros_initialize(argc, argv, "EOS");
+ fpt = fopen(panepath, "r"); if(NULL!=fpt) {
+ fclose(fpt);
+ kclui_initialize(panepath, KGEN_NONE, "EOS", "mrcImageMergeFFT",
+ func_usage_additions,
+ func_get_args,
+ func_free_args);
+ }
+}
+#endif /* KHOROS */
--- /dev/null
+/*
+# mrcImageMergeFFT : $Revision$
+# $Date$
+# Created by $Author$
+# Usage : mrcImageMergeFFT
+# Attention
+# $Loccker$
+# $State$
+#
+*/
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#define GLOBAL_DECLARATION
+#include "../inc/config.h"
+
+#define DEBUG
+#include "genUtil.h"
+#include "mrcImage.h"
+
+typedef struct lmrcImageMergeFFTInfo {
+ int nx;
+ int ny;
+} lmrcImageMergeFFTInfo;
+
+typedef enum lmrcImageMergeFFTMode {
+ a=0,
+ b=1
+} lmrcImageMergeFFTMode;
+
+extern void lmrcImageMergeFFTInfoCalc(mrcImage* out, mrcImage* in, lmrcImageMergeFFTInfo linfo, int mode);
+
+int
+main(int argc, char* argv[])
+{
+ mrcImage in;
+ mrcImage out;
+ mrcImageMergeFFTInfo info;
+ lmrcImageMergeFFTInfo linfo;
+
+ init0(&info);
+ argCheck(&info, argc, argv);
+ init1(&info);
+
+ DEBUGPRINT("Program Start\n");
+ linfo.nx = info.nx;
+ linfo.ny = info.ny;
+ mrcFileRead(&in, info.In, "in main", 0);
+
+ lmrcImageMergeFFTInfoCalc(&out, &in, linfo, info.mode);
+
+ mrcFileWrite(&out, info.Out, "in main", 0);
+ exit(EXIT_SUCCESS);
+}
+
+void
+additionalUsage()
+{
+ fprintf(stderr, "----- Additional Usage -----\n");
+}
+
+
+void
+lmrcImageMergeFFTInfoCalc(mrcImage* out, mrcImage* in, lmrcImageMergeFFTInfo linfo, int mode)
+{
+ mrcImageParaTypeReal x, y, z;
+ mrcImageParaTypeReal srcx, srcy, srcz;
+ mrcImageParaTypeReal X, Y, Z;
+ mrcImage part;
+ mrcImage fft;
+ mrcImage pow;
+ double data;
+
+ out->Header = in->Header;
+ out->HeaderN.x = in->HeaderN.x*2;
+ out->HeaderN.y = in->HeaderN.y*2;
+ mrcInit(out, NULL);
+
+ part->Header = in->Header;
+ part->HeaderN.x = linfo.nx;
+ part->HeaderN.y = linfo.ny;
+ mrcInit(&part, NULL);
+
+ for(y=0; y<in->HeaderN.y; y++) {
+ for(x=0; x<in->HeaderN.x; x++) {
+ for(srcy=x-linfo.nx/2; srcy<in->HeaderN.y; srcy++) {
+ for(srcx=y-linfo.ny/2; srcx<in->HeaderN.x; srcx++) {
+ mrcPixelDataGet(&mrc, srcx, srcy, 0, &data,
+ }
+ }
+ }
+ }
+}
--- /dev/null
+<HTML>
+<HEAD>
+<TITLE>mrcImageMergeFFT</TITLE>
+</HEAD>
+<BODY>
+<H1>mrcImageMergeFFT</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: mrcImageMergeFFT
+Options:
+ [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
+ [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-n nx (0 ).as(Integer )
+ ny (0 ).as(Integer ) ] :Optional :[pixel]
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+</PRE>
+</BODY>
+</HTML>
--- /dev/null
+-F 4.3 1 0 52x1+0+0 +0+0 'Cantata' cantata
+ -M 1 1 52x1+0+0 +1+0 ' ' subform
+ -P 1 0 52x1+0+1 +0+0 ' ' mrcImageMergeFFT
+ -D 1 0 9x1+0+0 'Options' _gui_options
+ -H 1 6x1+0+0 'License' 'license' $BOOTSTRAP/repos/license/License license
+ -E
+ -R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/mrcImageMergeFFT
+ -H 1 5x1+41+0 'Help' 'help page' $EOS/src/Tools/mrcImage/mrcImageMergeFFT/doc/mrcImageMergeFFT.doc help
+ -Q 1 0 5.25x1+47+0 'Close'
+ -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'InputDataFile' i
+ -O 1 0 1 1 0 1 -1x1+1+3.000000 ' ' 'Out' 'OutputDataFile' o
+ -I 1 0 1 0 0 1 -1x1+1+4.500000 ' ' 'configFile' 'ConfigurationFile' c
+ -I 1 0 0 1 0 1 -1x1+1+6 ' ' '0' 'nx' [pixel]
+ -i 1 0 1 0 0 -1x1+1+7.500000 0 0 0 0 0 'mode' 'Mode' m
+ -E
+ -E
+-E
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
+void
+usage(char* thisProgram)
+{
+ fprintf(stderr, "Usage: %s\n", thisProgram);
+ fprintf(stderr, "Options:\n");
+ fprintf(stderr, " [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile\n");
+ fprintf(stderr, " [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile\n");
+ fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");
+ fprintf(stderr, " [-n nx (0 ).as(Integer ) \n ny (0 ).as(Integer ) ] :Optional :[pixel]\n");
+ fprintf(stderr, " [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode\n");
+ additionalUsage();
+}
+
+void
+htmlBeforeUsage(char* thisProgram)
+{
+ fprintf(stderr, "<HTML>\n");
+ fprintf(stderr, "<HEAD>\n");
+ fprintf(stderr, "<TITLE>%s</TITLE>\n", thisProgram);
+ fprintf(stderr, "</HEAD>\n");
+ fprintf(stderr, "<BODY>\n");
+ fprintf(stderr, "<H1>%s</H1>\n", thisProgram);
+ fprintf(stderr, "<H2>Usage</H2>\n");
+ fprintf(stderr, "<PRE>\n");
+}
+
+void
+htmlAfterUsage(char* thisProgram)
+{
+ fprintf(stderr, "</PRE>\n");
+ fprintf(stderr, "</BODY>\n");
+ fprintf(stderr, "</HTML>\n");
+}
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
"-i","-i[nput]","Input:mrcImage","Essential","1","1","In","inFile::mrcImage","NULL"
"-o","-o[utput]","Output:mrcImage","Essential","1","1","Out","outFile::mrcImage","NULL"
"-O","-O[utput]","Output:ASCII","Optional","1","1","OutPat","outFile::ASCII","stdout"
+"-oG","-o[utput]G[uinier]","Output:mrcImage","Optional","1","1","OutGuinier","outFile::mrcImage","NULL"
+"-OG","-O[utput]G[uinier]","Output:ASCII","Optional","1","1","OutGuinierPlot","outFile::ASCII","stdout"
"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
char* OutPat;
FILE* fptOutPat;
+ long flagOutGuinier;
+ char* OutGuinier;
+ FILE* fptOutGuinier;
+
+ long flagOutGuinierPlot;
+ char* OutGuinierPlot;
+ FILE* fptOutGuinierPlot;
+
long flagconfigFile;
char* configFile;
FILE* fptconfigFile;
}
SBREAK;
}
+ SCASE("oG") {
+ if(i+1<argc) {
+ info->OutGuinier = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagOutGuinier++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("OG") {
+ if(i+1<argc) {
+ info->OutGuinierPlot = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagOutGuinierPlot++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
SCASE("c") {
if(i+1<argc) {
info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
info->fptIn = NULL; info->flagIn = 0;
info->fptOut = NULL; info->flagOut = 0;
info->fptOutPat = stdout; info->flagOutPat = 0;
+ info->fptOutGuinier = NULL; info->flagOutGuinier = 0;
+ info->fptOutGuinierPlot = stdout; info->flagOutGuinierPlot = 0;
info->fptconfigFile = NULL; info->flagconfigFile = 0;
info->mode = 0; info->flagmode = 0;
}
info->fptOutPat = fileOpen(info->OutPat, "w");
}
+ if(info->flagOutGuinier) {
+ info->fptOutGuinier = fileOpen(info->OutGuinier, "w");
+ }
+
+ if(info->flagOutGuinierPlot) {
+ info->fptOutGuinierPlot = fileOpen(info->OutGuinierPlot, "w");
+ }
+
if(info->flagconfigFile) {
info->fptconfigFile = fileOpen(info->configFile, "r");
}
mrcImagePattersonFunctionCalcInfo info;
mrcImage in;
mrcImage out;
+ mrcImage outfft;
init0(&info);
argCheck(&info, argc, argv);
DEBUGPRINT("Program Start\n");
mrcFileRead(&in, info.In, "in main", 0);
- lmrcImagePattersonFunctionCalc(&out, &in);
+ lmrcImagePattersonFunctionCalc(&out, &outfft, &in);
if(info.flagOutPat) {
lmrcImagePattersonFunctionPrint(info.fptOutPat, &out, info.mode);
}
+
+ if(info.flagOutGuinierPlot) {
+ lmrcImageGuinierFunctionPrint(info.fptOutGuinierPlot, &outfft, info.mode);
+ }
+
if(info.flagOut) {
+ DEBUGPRINT("Write^n");
mrcFileWrite(&out, info.Out, "in main", 0);
}
+
+ if(info.flagOutGuinier) {
+ DEBUGPRINT("Write^n");
+ mrcFileWrite(&outfft, info.OutGuinier, "in main", 0);
+ }
exit(EXIT_SUCCESS);
}
[-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input:mrcImage
[-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output:mrcImage
[-O[utput] OutPat (stdout ).as(outFile::ASCII ) ] :Optional :Output:ASCII
+ [-o[utput]G[uinier] OutGuinier (NULL ).as(outFile::mrcImage ) ] :Optional :Output:mrcImage
+ [-O[utput]G[uinier] OutGuinierPlot (stdout ).as(outFile::ASCII ) ] :Optional :Output:ASCII
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
----- Additional Usage -----
-I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'Input:mrcImage' i
-O 1 0 1 1 0 1 -1x1+1+3.000000 ' ' 'Out' 'Output:mrcImage' o
-O 1 0 1 0 0 1 -1x1+1+4.500000 ' ' 'OutPat' 'Output:ASCII' O
- -I 1 0 1 0 0 1 -1x1+1+6.000000 ' ' 'configFile' 'ConfigurationFile' c
- -i 1 0 1 0 0 -1x1+1+7.500000 0 0 0 0 0 'mode' 'Mode' m
+ -O 1 0 1 0 0 1 -1x1+1+6.000000 ' ' 'OutGuinier' 'Output:mrcImage' oG
+ -O 1 0 1 0 0 1 -1x1+1+7.500000 ' ' 'OutGuinierPlot' 'Output:ASCII' OG
+ -I 1 0 1 0 0 1 -1x1+1+9.000000 ' ' 'configFile' 'ConfigurationFile' c
+ -i 1 0 1 0 0 -1x1+1+10.500000 0 0 0 0 0 'mode' 'Mode' m
-E
-E
-E
fprintf(stderr, " [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input:mrcImage\n");
fprintf(stderr, " [-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output:mrcImage\n");
fprintf(stderr, " [-O[utput] OutPat (stdout ).as(outFile::ASCII ) ] :Optional :Output:ASCII\n");
+ fprintf(stderr, " [-o[utput]G[uinier] OutGuinier (NULL ).as(outFile::mrcImage ) ] :Optional :Output:mrcImage\n");
+ fprintf(stderr, " [-O[utput]G[uinier] OutGuinierPlot (stdout ).as(outFile::ASCII ) ] :Optional :Output:ASCII\n");
fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");
fprintf(stderr, " [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode\n");
additionalUsage();
int j, nv, check, count, nitem;
nv = argc - i - 1;
nitem = 1 ;
- check = nv%nitem ;
- count = nv/nitem ;
- if(0!=check) { fprintf(stderr, "Variable Number is strange. The number must be %d-times. nv: %d i\n", nitem, nv); usage(argv[0]); exit(EXIT_FAILURE);}
- info->contourLevel = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- for(j=0; j<count; j++) {
- info->contourLevel[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagcontourLevel=count;
- }
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("I") {
- if(i+0<argc) {
- info->Inverse++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("A") {
- if(i+0<argc) {
- info->Auto++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("AC") {
- if(i+1<argc) {
- info->AutoContour = stringGetNthIntegerData(argv[i+1], 1, " ,");
- i++;
- info->flagAutoContour++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("PC") {
- if(i+1<argc) {
- info->PeakContour = stringGetNthIntegerData(argv[i+1], 1, " ,");
- i++;
- info->flagPeakContour++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("AC2") {
- if(i+1<argc) {
- info->AutoContour2 = stringGetNthIntegerData(argv[i+1], 1, " ,");
- i++;
- info->flagAutoContour2++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("Y") {
- if(i+1<argc) {
- info->Yexpand = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagYexpand++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("RGB") {
- if(i+3<argc) {
- info->Red = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagRed++;
- info->Green = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagGreen++;
- info->Blue = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagBlue++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("RGBGradient") {
- if(i+6<argc) {
- info->RedFirst = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagRedFirst++;
- info->GreenFirst = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagGreenFirst++;
- info->BlueFirst = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagBlueFirst++;
- info->RedLast = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagRedLast++;
- info->GreenLast = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagGreenLast++;
- info->BlueLast = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagBlueLast++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("HSB") {
- if(i+3<argc) {
- info->Hue = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagHue++;
- info->Saturation = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagSaturation++;
- info->Brightness = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagBrightness++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("HSBGradient") {
- if(i+6<argc) {
- info->HueFirst = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagHueFirst++;
- info->SaturationFirst = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagSaturationFirst++;
- info->BrightnessFirst = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagBrightnessFirst++;
- info->HueLast = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagHueLast++;
- info->SaturationLast = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagSaturationLast++;
- info->BrightnessLast = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagBrightnessLast++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("LineColourRGB") {
- if(i+3<argc) {
- info->LineRed = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineRed++;
- info->LineGreen = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineGreen++;
- info->LineBlue = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineBlue++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("LineColourRGBGradient") {
- if(i+6<argc) {
- info->LineRedFirst = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineRedFirst++;
- info->LineGreenFirst = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineGreenFirst++;
- info->LineBlueFirst = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineBlueFirst++;
- info->LineRedLast = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineRedLast++;
- info->LineGreenLast = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineGreenLast++;
- info->LineBlueLast = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineBlueLast++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("LineColourHSB") {
- if(i+3<argc) {
- info->LineHue = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineHue++;
- info->LineSaturation = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineSaturation++;
- info->LineBrightness = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineBrightness++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("LineColourHSBGradient") {
- if(i+6<argc) {
- info->LineHueFirst = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineHueFirst++;
- info->LineSaturationFirst = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineSaturationFirst++;
- info->LineBrightnessFirst = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineBrightnessFirst++;
- info->LineHueLast = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineHueLast++;
- info->LineSaturationLast = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineSaturationLast++;
- info->LineBrightnessLast = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineBrightnessLast++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("LineChange") {
- if(i+1<argc) {
- info->LineColorChange = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineColorChange++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("LineWidthStart") {
- if(i+1<argc) {
- info->LineWidthStart = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineWidthStart++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("LineWidthStep") {
- if(i+1<argc) {
- info->LineWidthStep = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagLineWidthStep++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("ReverseOrder") {
- if(i+0<argc) {
- info->ReverseOrder++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("Untwist") {
- if(i+1<argc) {
- info->untwist = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flaguntwist++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("UpsideDown") {
- if(i+0<argc) {
- info->UpsideDown++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("Centre") {
- if(i+0<argc) {
- info->Centre++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("CircleRadius") {
- if(i+1<argc) {
- info->CircleRadius = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagCircleRadius++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("m") {
- if(i+1<argc) {
- info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
- i++;
- info->flagmode++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("h") {
- usage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SCASE("html") {
- htmlBeforeUsage(argv[0]);
- usage(argv[0]);
- htmlAfterUsage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SDEFAULT {
- fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
- usage(argv[0]);
- exit(EXIT_FAILURE);
- break;
- }
- SSWITCHEND;
- }
- }
-}
int j, nv, check, count, nitem;
nv = argc - i - 1;
nitem = 1 ;
- check = nv%nitem ;
- count = nv/nitem ;
- if(0!=check) { fprintf(stderr, "Variable Number is strange. The number must be %d-times. nv: %d i\n", nitem, nv); usage(argv[0]); exit(EXIT_FAILURE);}
- info->contourLevel = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- for(j=0; j<count; j++) {
- info->contourLevel[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagcontourLevel=count;
- }
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("h") {
- usage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SCASE("html") {
- htmlBeforeUsage(argv[0]);
- usage(argv[0]);
- htmlAfterUsage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SDEFAULT {
- fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
- usage(argv[0]);
- exit(EXIT_FAILURE);
- break;
- }
- SSWITCHEND;
- }
- }
-}
int j, nv, check, count, nitem;
nv = argc - i - 1;
nitem = 1 ;
- check = nv%nitem ;
- count = nv/nitem ;
- if(0!=check) { fprintf(stderr, "Variable Number is strange. The number must be %d-times. nv: %d i\n", nitem, nv); usage(argv[0]); exit(EXIT_FAILURE);}
- info->Contour = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- for(j=0; j<count; j++) {
- info->Contour[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagContour=count;
- }
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("h") {
- usage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SCASE("html") {
- htmlBeforeUsage(argv[0]);
- usage(argv[0]);
- htmlAfterUsage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SDEFAULT {
- fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
- usage(argv[0]);
- exit(EXIT_FAILURE);
- break;
- }
- SSWITCHEND;
- }
- }
-}
int j, nv, check, count, nitem;
nv = argc - i - 1;
nitem = 1 ;
- check = nv%nitem ;
- count = nv/nitem ;
- if(0!=check) { fprintf(stderr, "Variable Number is strange. The number must be %d-times. nv: %d i\n", nitem, nv); usage(argv[0]); exit(EXIT_FAILURE);}
- info->Contour = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- for(j=0; j<count; j++) {
- info->Contour[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagContour=count;
- }
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("h") {
- usage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SCASE("html") {
- htmlBeforeUsage(argv[0]);
- usage(argv[0]);
- htmlAfterUsage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SDEFAULT {
- fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
- usage(argv[0]);
- exit(EXIT_FAILURE);
- break;
- }
- SSWITCHEND;
- }
- }
-}
int j, nv, check, count, nitem;
nv = argc - i - 1;
nitem = 1 ;
- check = nv%nitem ;
- count = nv/nitem ;
- if(0!=check) { fprintf(stderr, "Variable Number is strange. The number must be %d-times. nv: %d i\n", nitem, nv); usage(argv[0]); exit(EXIT_FAILURE);}
- info->roiLine = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- for(j=0; j<count; j++) {
- info->roiLine[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagroiLine=count;
- }
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("x") {
- if(i+1<argc) {
- info->x = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagx++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("y") {
- if(i+1<argc) {
- info->y = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagy++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("W") {
- if(i+1<argc) {
- info->Width = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagWidth++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("H") {
- if(i+1<argc) {
- info->Height = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagHeight++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("cor") {
- if(i+1<argc) {
- info->Cor = stringGetNthRealData(argv[i+1], 1, " ,");
- i++;
- info->flagCor++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("S") {
- if(i+1<argc) {
- info->Shrink = stringGetNthIntegerData(argv[i+1], 1, " ,");
- i++;
- info->flagShrink++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("c") {
- if(i+1<argc) {
- info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
- i++;
- info->flagconfigFile++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("m") {
- if(i+1<argc) {
- info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
- i++;
- info->flagmode++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("h") {
- usage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SCASE("html") {
- htmlBeforeUsage(argv[0]);
- usage(argv[0]);
- htmlAfterUsage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SDEFAULT {
- fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
- usage(argv[0]);
- exit(EXIT_FAILURE);
- break;
- }
- SSWITCHEND;
- }
- }
-}
int j, nv, check, count, nitem;
nv = argc - i - 1;
nitem = 1 ;
- check = nv%nitem ;
- count = nv/nitem ;
- if(0!=check) { fprintf(stderr, "Variable Number is strange. The number must be %d-times. nv: %d i\n", nitem, nv); usage(argv[0]); exit(EXIT_FAILURE);}
- info->contourLevel = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- for(j=0; j<count; j++) {
- info->contourLevel[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagcontourLevel=count;
- }
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("h") {
- usage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SCASE("html") {
- htmlBeforeUsage(argv[0]);
- usage(argv[0]);
- htmlAfterUsage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SDEFAULT {
- fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
- usage(argv[0]);
- exit(EXIT_FAILURE);
- break;
- }
- SSWITCHEND;
- }
- }
-}
int j, nv, check, count, nitem;
nv = argc - i - 1;
nitem = 1 ;
- check = nv%nitem ;
- count = nv/nitem ;
- if(0!=check) { fprintf(stderr, "Variable Number is strange. The number must be %d-times. nv: %d i\n", nitem, nv); usage(argv[0]); exit(EXIT_FAILURE);}
- info->contourLevel = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- for(j=0; j<count; j++) {
- info->contourLevel[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagcontourLevel=count;
- }
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("h") {
- usage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SCASE("html") {
- htmlBeforeUsage(argv[0]);
- usage(argv[0]);
- htmlAfterUsage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SDEFAULT {
- fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
- usage(argv[0]);
- exit(EXIT_FAILURE);
- break;
- }
- SSWITCHEND;
- }
- }
-}
int j, nv, check, count, nitem;
nv = argc - i - 1;
nitem = 8 ;
- check = nv%nitem ;
- count = nv/nitem ;
- if(0!=check) { fprintf(stderr, "Variable Number is strange. The number must be %d-times. nv: %d i\n", nitem, nv); usage(argv[0]); exit(EXIT_FAILURE);}
- info->n = (long*)memoryAllocate(sizeof(long)*count, "in argCheck");
- info->l = (long*)memoryAllocate(sizeof(long)*count, "in argCheck");
- info->Y = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- info->leftMin = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- info->leftMax = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- info->rightMin = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- info->rightMax = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- info->weight = (float*)memoryAllocate(sizeof(float)*count, "in argCheck");
- for(j=0; j<count; j++) {
- info->n[j] = stringGetNthIntegerData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagn=count;
- for(j=0; j<count; j++) {
- info->l[j] = stringGetNthIntegerData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagl=count;
- for(j=0; j<count; j++) {
- info->Y[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagY=count;
- for(j=0; j<count; j++) {
- info->leftMin[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagleftMin=count;
- for(j=0; j<count; j++) {
- info->leftMax[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagleftMax=count;
- for(j=0; j<count; j++) {
- info->rightMin[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagrightMin=count;
- for(j=0; j<count; j++) {
- info->rightMax[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagrightMax=count;
- for(j=0; j<count; j++) {
- info->weight[j] = stringGetNthRealData(argv[i+j*nitem+1], 1, " ,");
- }
- i++;
- info->flagweight=count;
- }
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("c") {
- if(i+1<argc) {
- info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
- i++;
- info->flagconfigFile++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("h") {
- usage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SCASE("html") {
- htmlBeforeUsage(argv[0]);
- usage(argv[0]);
- htmlAfterUsage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SDEFAULT {
- fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
- usage(argv[0]);
- exit(EXIT_FAILURE);
- break;
- }
- SSWITCHEND;
- }
- }
-}
-SOURCE_FILE =\
+SOURCE=\
+mrcImageSeriesInfoPerPixel \
#LastSource
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