removed all files

[xerial/xerial-core.git] / src / test / java / org / xerial / silk / example.silk

diff --git a/src/test/java/org/xerial/silk/example.silk b/src/test/java/org/xerial/silk/example.silk
deleted file mode 100755 (executable)
index efd6fa7..0000000
--- a/src/test/java/org/xerial/silk/example.silk
+++ /dev/null
@@ -1,145 +0,0 @@
-%silk version:1.0 \r
-# single-line comment\r
-\r
-# object description (one-liner)\r
-# -node_name(:node_value) attrib_name(:attrib_value)? (attrib_name(:attrib_value)?)*\r
--object(p1:v1, p2:v2)  # line-end comment\r
-\r
-# object description (folded). Indentation represents nested structure\r
--object\r
- -p3:v3\r
- -p4:v4\r
-\r
-# tab-separeted data description with an object schema\r
--address(id, name, phone)|\r
-1      leo     xxx-xxxx\r
-2      yui     yyy-yyyy\r
-\r
-# The above expression is equivalent to the following descriptions:\r
--address(id:1, name:leo, phone:xxx-xxxx)\r
--address(id:2, name:yui, phone:yyy-yyyy)\r
-\r
-\r
-# combination of one-line and folded attributes of an object\r
--o2(param1:value1)\r
-  -param2:value2\r
-\r
-# sample data (tab)\r
--gene(id, chr, name)|\r
-1      chr1    gene1\r
-2      chr1    gene2   \r
-3      chr1    gene3\r
-4      chr2    gene4\r
-\r
-# alternative tree structures, grouped by the chr values\r
--chr:chr1\r
- -gene(id, name)|\r
-1      gene1\r
-2      gene2\r
-3      gene3\r
--chr:chr2\r
-  -gene(id, name)|\r
-4      gene4\r
-\r
-\r
-# nested structure. relative depth of the indentation determines the nest level\r
-- paper(id:1)\r
- - title:"some paper"\r
- - reference\r
-  - title:"reference paper"\r
-  - author:author 1\r
-  - author:author 2\r
- - year:2009\r
-- paper(id:2)\r
- - title:"another paper"\r
- - year:2008\r
-\r
-# binary data\r
-- gene(name:NM_001005277)\r
- -sequence>\r
-ATGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTTTCTGGGACTCACTCATTCATGGGAGATCC\r
-AGCTCCTCCTCCTAGTGTTTTCCTCTGTGCTCTATGTGGCAAGCATTACTGGAAACATCCTCATTGTGTT\r
-TTCTGTGACCACTGACCCTCACTTACACTCCCCCATGTACTTTCTACTGGCCAGTCTCTCCTTCATTGAC\r
-TTAGGAGCCTGCTCTGTCACTTCTCCCAAGATGATTTATGACCTGTTCAGAAAGCGCAAAGTCATCTCCT\r
-TTGGAGGCTGCATCGCTCAAATCTTCTTCATCCACGTCGTTGGTGGTGTGGAGATGGTGCTGCTCATAGC\r
-CATGGCCTTTGACAGATATGTGGCCCTATGTAAGCCCCTCCACTATCTGACCATTATGAGCCCAAGAATG\r
-TGCCTTTCATTTCTGGCTGTTGCCTGGACCCTTGGTGTCAGTCACTCCCTGTTCCAACTGGCATTTCTTG\r
-TTAATTTAGCCTTCTGTGGCCCTAATGTGTTGGACAGCTTCTACTGTGACCTTCCTCGGCTTCTCAGACT\r
-AGCCTGTACCGACACCTACAGATTGCAGTTCATGGTCACTGTTAACAGTGGGTTTATCTGTGTGGGTACT\r
-TTCTTCATACTTCTAATCTCCTACGTCTTCATCCTGTTTACTGTTTGGAAACATTCCTCAGGTGGTTCAT\r
-CCAAGGCCCTTTCCACTCTTTCAGCTCACAGCACAGTGGTCCTTTTGTTCTTTGGTCCACCCATGTTTGT\r
-GTATACACGGCCACACCCTAATTCACAGATGGACAAGTTTCTGGCTATTTTTGATGCAGTTCTCACTCCT\r
-TTTCTGAATCCAGTTGTCTATACATTCAGGAATAAGGAGATGAAGGCAGCAATAAAGAGAGTATGCAAAC\r
-AGCTAGTGATTTACAAGAGGATCTCATAA\r
-\r
-# binady data with gzip compression and base64 encode.\r
-- gene(name:NM_001005277)\r
- - sequence[gzip/base64]>\r
-H4sIAL2gYUkAA0WT0ZHEMAhD/zOTojR80ID7r+X0JGcvG29iAkIIrLMrFj+d0XitDcebY+Ph4t87\r
-u811OaxN3Jl5H62t3w0AYez8xifDgTqyo4MFmqRRnEQKh7zPaYSGNDya0AGk5QIIC5igDHzJYNci\r
-acAR5GzbkghKIARn3wdOwoM42OxAEDgVDxxgFhjbwBIyndNk0LT74pa7Uua1qWUi5hO1YEhKPK4e\r
-U2XInVqhWeUnOp0UEc5+N5+C8C0dCfuUWbFKIpJUsFTn+Dg3KjhOiQKBm38uaiM2LOcTuTqlVVsr\r
-NaBPJbbTEAFCqkOuvTMSJkvCTtZG+aBmp7l9j1jNefWPuFfojFSRfrPT4an0eFlnpEopp2JWrXSC\r
-x+WQYclcpyUb384W1vdh/iko85VvEWxaXuTR/nqgnhJ9ZV/xU1eamUlB15yEUmdARec7MeENQ2w5\r
-jnDIQN7zBfM0LePAue186X3+AB6A8ZbHAwAA\r
-\r
-\r
-# attribute_name[format_name]\r
-# Available format names are: \r
-#   tab(default), cvs(comma), space, base64(binary), gzip/base64\r
-\r
-\r
-# Optionally, parenthesis can be used to wrap attribute nodes\r
--coordinate(group:utgb, type:chromosome, species:human, revision:hg18, name:chr1)\r
-\r
-# microdata format in the attribute\r
--gene(id, chr, name, cds(start, end))|\r
-1      chr1    gene1   [10, 200]\r
-2      chr1    gene2   [20, 200]\r
-3      chr1    gene3   [30, 40]\r
-4      chr2    gene4   [100, 200]\r
-\r
-# microdata format in the attribute\r
--gene\r
- - id:1\r
- - chr:chr1\r
- - name:gene1\r
- - cds(start, end)|\r
-10     200\r
- - exon(start,end)|\r
-850983 851043\r
-851164 851256\r
-\r
-# array construct with indentation\r
--gene\r
- - exon[csv](start,end)>\r
-   850983, 851043\r
-   851164, 851256\r
-\r
-\r
-# JSON \r
--gene\r
- - id:1\r
- - chr:chr1\r
- - name:gene1\r
- - cds: {"start":10, "end":200}\r
- - exon: [{"start":850983, "end":851043}, {"start":851164, "end":851256}]\r
-\r
-\r
-# Folding deep nesting in SILK\r
--A:v1\r
- - B:v2\r
-  - C:v3\r
-    - D:v4\r
-     - E:v5\r
-\r
-# A - B - C - D nesting can be flatten in a line  \r
-#- A:v1 B:v2 C:v3 D:v4\r
-# - E:v5\r
-\r
-# By using double quotations, long parameter names allowing spaces can be used  \r
--"long parameter name":"quoted value"\r
-\r
-# @-mark denotes function \r
-#-@import(somefile.silk)\r
-\r