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Alter shutdown (again) to try and correct sync on close.
[neighbornote/NeighborNote.git] / src / cx / fbn / nevernote / NeverNote.java
index 893aeec..bb4f480 100644 (file)
@@ -43,6 +43,8 @@ import java.util.List;
 import java.util.SortedMap;
 import java.util.Vector;
 
+import org.apache.log4j.Level;
+import org.apache.log4j.Logger;
 import org.apache.thrift.TException;
 import org.h2.tools.ChangeFileEncryption;
 
@@ -52,9 +54,11 @@ import com.evernote.edam.error.EDAMUserException;
 import com.evernote.edam.notestore.NoteFilter;
 import com.evernote.edam.notestore.NoteVersionId;
 import com.evernote.edam.type.Data;
+import com.evernote.edam.type.LinkedNotebook;
 import com.evernote.edam.type.Note;
 import com.evernote.edam.type.NoteAttributes;
 import com.evernote.edam.type.Notebook;
+import com.evernote.edam.type.Publishing;
 import com.evernote.edam.type.QueryFormat;
 import com.evernote.edam.type.Resource;
 import com.evernote.edam.type.SavedSearch;
@@ -92,6 +96,7 @@ import com.trolltech.qt.gui.QCloseEvent;
 import com.trolltech.qt.gui.QColor;
 import com.trolltech.qt.gui.QComboBox;
 import com.trolltech.qt.gui.QComboBox.InsertPolicy;
+import com.trolltech.qt.gui.QCursor;
 import com.trolltech.qt.gui.QDesktopServices;
 import com.trolltech.qt.gui.QDialog;
 import com.trolltech.qt.gui.QFileDialog;
@@ -102,7 +107,6 @@ import com.trolltech.qt.gui.QHBoxLayout;
 import com.trolltech.qt.gui.QIcon;
 import com.trolltech.qt.gui.QImage;
 import com.trolltech.qt.gui.QLabel;
-import com.trolltech.qt.gui.QListWidget;
 import com.trolltech.qt.gui.QMainWindow;
 import com.trolltech.qt.gui.QMenu;
 import com.trolltech.qt.gui.QMessageBox;
@@ -123,6 +127,9 @@ import com.trolltech.qt.gui.QTableWidgetItem;
 import com.trolltech.qt.gui.QTextEdit;
 import com.trolltech.qt.gui.QToolBar;
 import com.trolltech.qt.gui.QTreeWidgetItem;
+import com.trolltech.qt.network.QNetworkAccessManager;
+import com.trolltech.qt.network.QNetworkReply;
+import com.trolltech.qt.network.QNetworkRequest;
 import com.trolltech.qt.webkit.QWebPage.WebAction;
 import com.trolltech.qt.webkit.QWebSettings;
 
@@ -134,14 +141,23 @@ import cx.fbn.nevernote.dialog.DBEncryptDialog;
 import cx.fbn.nevernote.dialog.DatabaseLoginDialog;
 import cx.fbn.nevernote.dialog.DatabaseStatus;
 import cx.fbn.nevernote.dialog.FindDialog;
+import cx.fbn.nevernote.dialog.IgnoreSync;
+import cx.fbn.nevernote.dialog.LogFileDialog;
 import cx.fbn.nevernote.dialog.LoginDialog;
 import cx.fbn.nevernote.dialog.NotebookArchive;
 import cx.fbn.nevernote.dialog.NotebookEdit;
 import cx.fbn.nevernote.dialog.OnlineNoteHistory;
+import cx.fbn.nevernote.dialog.PublishNotebook;
 import cx.fbn.nevernote.dialog.SavedSearchEdit;
+import cx.fbn.nevernote.dialog.SetIcon;
+import cx.fbn.nevernote.dialog.ShareNotebook;
+import cx.fbn.nevernote.dialog.StackNotebook;
 import cx.fbn.nevernote.dialog.TagEdit;
 import cx.fbn.nevernote.dialog.ThumbnailViewer;
+import cx.fbn.nevernote.dialog.UpgradeAvailableDialog;
 import cx.fbn.nevernote.dialog.WatchFolder;
+import cx.fbn.nevernote.filters.FilterEditorNotebooks;
+import cx.fbn.nevernote.filters.FilterEditorTags;
 import cx.fbn.nevernote.gui.AttributeTreeWidget;
 import cx.fbn.nevernote.gui.BrowserWindow;
 import cx.fbn.nevernote.gui.DateAttributeFilterTable;
@@ -184,6 +200,7 @@ public class NeverNote extends QMainWindow{
        QAction                                 trayExitAction;                         // Exit the application
        QAction                                 trayShowAction;                         // toggle the show/hide action          
        QAction                                 trayAddNoteAction;                      // Add a note from the system tray
+       QNetworkAccessManager   versionChecker;                         // Used when checking for new versions
        
     NotebookTreeWidget                 notebookTree;                           // List of notebooks
     AttributeTreeWidget                attributeTree;                          // List of note attributes
@@ -209,7 +226,9 @@ public class NeverNote extends QMainWindow{
     String                                     currentNoteGuid;                        // GUID of the current note 
     Note                                       currentNote;                            // The currently viewed note
     boolean                                    noteDirty;                                      // Has the note been changed?
-    boolean                            inkNote;                    // if this is an ink note, it is read only
+    boolean                            inkNote;                   // if this is an ink note, it is read only
+    boolean                                    readOnly;                                       // Is this note read-only?
+       
   
     ListManager                                listManager;                                    // DB runnable task
     
@@ -251,7 +270,7 @@ public class NeverNote extends QMainWindow{
     QAction                            synchronizeButton;                      // Synchronize with Evernote
     QAction                            allNotesButton;                         // Reset & view all notes
     QTimer                             synchronizeAnimationTimer;      // Timer to change animation button
-    double                             synchronizeIconAngle;           // Used to rotate sync icon
+    int                                        synchronizeIconAngle;           // Used to rotate sync icon
     QAction                    printButton;                            // Print Button
     QAction                            tagButton;                                      // Tag edit button
     QAction                            attributeButton;                        // Attribute information button
@@ -280,8 +299,16 @@ public class NeverNote extends QMainWindow{
     int                                        tagDeadCount=0;                         // number of consecutive dead times for the tag thread
     int                                        trashDeadCount=0;                       // number of consecutive dead times for the trash thread
     int                                saveThreadDeadCount=0;          // number of consecutive dead times for the save thread
+    boolean                            disableTagThreadCheck=false;
+    boolean                            disableNotebookThreadCheck=false;
+    boolean                            disableTrashThreadCheck=false;
+    boolean                            disableSaveThreadCheck=false;
+    boolean                            disableSyncThreadCheck=false;
+    boolean                            disableIndexThreadCheck=false;
     
     HashMap<String, String>            noteCache;                      // Cash of note content 
+    HashMap<String, Boolean>   readOnlyCache;          // List of cashe notes that are read-only
+    HashMap<String, Boolean>   inkNoteCache;           // List of cache notes that are ink notes 
     List<String>               historyGuids;                           // GUIDs of previously viewed items
     int                                        historyPosition;                        // Position within the viewed items
     boolean                            fromHistory;                            // Is this from the history queue?
@@ -294,6 +321,11 @@ public class NeverNote extends QMainWindow{
     Signal0                    minimizeToTray;
     boolean                            windowMaximized = false;        // Keep track of the window state for restores
     List<String>               pdfReadyQueue;                          // Queue of PDFs that are ready to be rendered.
+    List<QPixmap>              syncIcons;                                      // Array of icons used in sync animation
+    private boolean            closeAction = false;            // Used to say when to close or when to minimize
+    private static Logger log = Logger.getLogger(NeverNote.class); 
+    private String             saveLastPath;                           // last path we used
+    private final QTimer               messageTimer;                           // Timer to clear the status message.
     
     
     String iconPath = new String("classpath:cx/fbn/nevernote/icons/");
@@ -305,18 +337,19 @@ public class NeverNote extends QMainWindow{
     //***************************************************************
     //***************************************************************
     // Application Constructor 
+       @SuppressWarnings("static-access")
        public NeverNote(DatabaseConnection dbConn)  {
                conn = dbConn;          
                if (conn.getConnection() == null) {
-                       String msg = "Unable to connect to the database.\n\nThe most probable reason is that some other process\n" +
+                       String msg = new String(tr("Unable to connect to the database.\n\nThe most probable reason is that some other process\n" +
                                "is accessing the database or NeverNote is already running.\n\n" +
-                               "Please end any other process or shutdown the other NeverNote before starting.\n\nExiting program.";
+                               "Please end any other process or shutdown the other NeverNote before starting.\n\nExiting program."));
                        
-            QMessageBox.critical(null, "Database Connection Error",msg);
+            QMessageBox.critical(null, tr("Database Connection Error") ,msg);
                        System.exit(16);
                }
 
-               thread().setPriority(Thread.MAX_PRIORITY);
+//             thread().setPriority(Thread.MAX_PRIORITY);
                
                logger = new ApplicationLogger("nevernote.log");
                logger.log(logger.HIGH, "Starting Application");
@@ -364,8 +397,11 @@ public class NeverNote extends QMainWindow{
         listManager = new ListManager(conn, logger);
         
                logger.log(logger.EXTREME, "Building index runners & timers");
-        indexRunner = new IndexRunner("indexRunner.log", Global.getDatabaseUrl(), Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword);
+        indexRunner = new IndexRunner("indexRunner.log", 
+                       Global.getDatabaseUrl(), Global.getIndexDatabaseUrl(), Global.getResourceDatabaseUrl(),
+                       Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword);
                indexThread = new QThread(indexRunner, "Index Thread");
+        indexRunner.indexAttachmentsLocally = Global.indexAttachmentsLocally();
                indexThread.start();
                
         synchronizeAnimationTimer = new QTimer();
@@ -380,7 +416,9 @@ public class NeverNote extends QMainWindow{
                                
                logger.log(logger.EXTREME, "Setting sync thread & timers");
                syncThreadsReady=1;
-               syncRunner = new SyncRunner("syncRunner.log", Global.getDatabaseUrl(), Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword);
+               syncRunner = new SyncRunner("syncRunner.log", 
+                               Global.getDatabaseUrl(), Global.getIndexDatabaseUrl(), Global.getResourceDatabaseUrl(),
+                               Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword);
                syncTime = new SyncTimes().timeValue(Global.getSyncInterval());
                syncTimer = new QTimer();
                syncTimer.timeout.connect(this, "syncTimer()");
@@ -402,7 +440,9 @@ public class NeverNote extends QMainWindow{
                
                logger.log(logger.EXTREME, "Starting thumnail thread");
                pdfReadyQueue = new ArrayList<String>();
-               thumbnailRunner = new ThumbnailRunner("thumbnailRunner.log", Global.getDatabaseUrl(), Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword);
+               thumbnailRunner = new ThumbnailRunner("thumbnailRunner.log", 
+                               Global.getDatabaseUrl(), Global.getIndexDatabaseUrl(), Global.getResourceDatabaseUrl(),
+                               Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword);
                thumbnailThread = new QThread(thumbnailRunner, "Thumbnail Thread");
                thumbnailRunner.noteSignal.thumbnailPageReady.connect(this, "thumbnailHTMLReady(String,QByteArray,Integer)");
                thumbnailThread.start();
@@ -410,7 +450,7 @@ public class NeverNote extends QMainWindow{
                thumbnailTimer = new QTimer();
                thumbnailTimer.timeout.connect(this, "thumbnailTimer()");
                thumbnailTimer();
-               thumbnailTimer.setInterval(5*1000);  // Thumbnail every 2 min
+               thumbnailTimer.setInterval(500*1000);  // Thumbnail every minute
                thumbnailTimer.start();
                
                logger.log(logger.EXTREME, "Starting authentication timer");
@@ -437,7 +477,7 @@ public class NeverNote extends QMainWindow{
                importFilesKeep = new ArrayList<String>();
                externalFileSaveTimer.start();
                
-        notebookTree = new NotebookTreeWidget();
+        notebookTree = new NotebookTreeWidget(conn);
         attributeTree = new AttributeTreeWidget();
         tagTree = new TagTreeWidget(conn);
         savedSearchTree = new SavedSearchTreeWidget();
@@ -454,6 +494,8 @@ public class NeverNote extends QMainWindow{
         
         // Setup the browser window
         noteCache = new HashMap<String,String>();
+        readOnlyCache = new HashMap<String, Boolean>();
+        inkNoteCache = new HashMap<String, Boolean>();
         browserWindow = new BrowserWindow(conn);
 
         mainLeftRightSplitter.addWidget(leftSplitter1);
@@ -502,6 +544,7 @@ public class NeverNote extends QMainWindow{
                tagTree.setDeleteAction(menuBar.tagDeleteAction);
                tagTree.setEditAction(menuBar.tagEditAction);
                tagTree.setAddAction(menuBar.tagAddAction);
+               tagTree.setIconAction(menuBar.tagIconAction);
                tagTree.setVisible(Global.isWindowVisible("tagTree"));
                tagTree.noteSignal.tagsAdded.connect(this, "tagsAdded(String, String)");
                menuBar.hideTags.setChecked(Global.isWindowVisible("tagTree"));
@@ -510,13 +553,20 @@ public class NeverNote extends QMainWindow{
                notebookTree.setDeleteAction(menuBar.notebookDeleteAction);
                notebookTree.setEditAction(menuBar.notebookEditAction);
                notebookTree.setAddAction(menuBar.notebookAddAction);
+               notebookTree.setIconAction(menuBar.notebookIconAction);
+               notebookTree.setStackAction(menuBar.notebookStackAction);
+               notebookTree.setPublishAction(menuBar.notebookPublishAction);
+               notebookTree.setShareAction(menuBar.notebookShareAction);
                notebookTree.setVisible(Global.isWindowVisible("notebookTree"));
                notebookTree.noteSignal.notebookChanged.connect(this, "updateNoteNotebook(String, String)");
+               notebookTree.noteSignal.tagsChanged.connect(this, "updateNoteTags(String, List)");
+           notebookTree.noteSignal.tagsChanged.connect(this, "updateListTags(String, List)");
                menuBar.hideNotebooks.setChecked(Global.isWindowVisible("notebookTree"));
 
                savedSearchTree.setAddAction(menuBar.savedSearchAddAction);
                savedSearchTree.setEditAction(menuBar.savedSearchEditAction);
                savedSearchTree.setDeleteAction(menuBar.savedSearchDeleteAction);
+               savedSearchTree.setIconAction(menuBar.savedSearchIconAction);
                savedSearchTree.itemSelectionChanged.connect(this, "updateSavedSearchSelection()");
                savedSearchTree.setVisible(Global.isWindowVisible("savedSearchTree"));
                menuBar.hideSavedSearches.setChecked(Global.isWindowVisible("savedSearchTree"));
@@ -564,7 +614,7 @@ public class NeverNote extends QMainWindow{
                trayExitAction = new QAction("Exit", this);
                trayAddNoteAction = new QAction("Add Note", this);
                
-               trayExitAction.triggered.connect(this, "close()");
+               trayExitAction.triggered.connect(this, "closeNeverNote()");
                trayAddNoteAction.triggered.connect(this, "addNote()");
                trayShowAction.triggered.connect(this, "trayToggleVisible()");
                
@@ -636,14 +686,18 @@ public class NeverNote extends QMainWindow{
        historyGuids.add(currentNoteGuid);
        historyPosition = 1;
        
+       menuBar.blockSignals(true);
+       menuBar.narrowListView.blockSignals(true);
+       menuBar.wideListView.blockSignals(true);
         if (Global.getListView() == Global.View_List_Narrow) { 
                menuBar.narrowListView.setChecked(true);
-//             narrowListView();
         }
         else{ 
                menuBar.wideListView.setChecked(true);
-//             wideListView();
         }
+        menuBar.blockSignals(false);
+       menuBar.narrowListView.blockSignals(false);
+       menuBar.wideListView.blockSignals(false);
 
         if (Global.getListView() == Global.View_List_Wide) {
                browserIndexSplitter.addWidget(noteTableView);
@@ -653,15 +707,21 @@ public class NeverNote extends QMainWindow{
                mainLeftRightSplitter.addWidget(browserWindow); 
         }
         
+               messageTimer = new QTimer();
+               messageTimer.timeout.connect(this, "clearMessage()");
+               messageTimer.setInterval(1000*15);
+               clearMessage();
+        
        int sortCol = Global.getSortColumn();
                int sortOrder = Global.getSortOrder();
                noteTableView.sortByColumn(sortCol, SortOrder.resolve(sortOrder));
-
+               if (Global.checkVersionUpgrade())
+                       checkForUpdates();
        }
-
-       
+               
        // Main entry point
        public static void main(String[] args) {
+               log.setLevel(Level.FATAL);
                QApplication.initialize(args);
                QPixmap pixmap = new QPixmap("classpath:cx/fbn/nevernote/icons/splash_logo.png");
                QSplashScreen splash = new QSplashScreen(pixmap);
@@ -679,7 +739,7 @@ public class NeverNote extends QMainWindow{
             dbConn = setupDatabaseConnection();
 
             // Must be last stage of setup - only safe once DB is open hence we know we are the only instance running
-            Global.getFileManager().purgeResDirectory();
+            Global.getFileManager().purgeResDirectory(true);
 
         } catch (InitializationException e) {
             // Fatal
@@ -732,7 +792,9 @@ public class NeverNote extends QMainWindow{
                         Global.getDatabaseUserPassword(), Global.cipherPassword);
             }
         }
-               DatabaseConnection dbConn = new DatabaseConnection(logger,Global.getDatabaseUrl(), Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword);
+               DatabaseConnection dbConn = new DatabaseConnection(logger,Global.getDatabaseUrl(), 
+                               Global.getIndexDatabaseUrl(), Global.getResourceDatabaseUrl(),
+                               Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword, 0);
        return dbConn;
     }
     
@@ -743,8 +805,8 @@ public class NeverNote extends QMainWindow{
         try {
                Statement st = conn.getConnection().createStatement();  
                st.execute("shutdown");
-               if (QMessageBox.question(this, "Are you sure"
-                               "Are you sure you wish to encrypt the database?",
+               if (QMessageBox.question(this, tr("Are you sure")
+                               tr("Are you sure you wish to encrypt the database?"),
                                QMessageBox.StandardButton.Yes, 
                                QMessageBox.StandardButton.No) == StandardButton.Yes.value()) {
                        ChangeFileEncryption.execute(dbPath, dbName, encryptCipher, null, Global.cipherPassword.toCharArray(), true);
@@ -837,6 +899,11 @@ public class NeverNote extends QMainWindow{
     // Exit point
        @Override
        public void closeEvent(QCloseEvent event) {     
+               if (Global.minimizeOnClose() && !closeAction && Global.showTrayIcon()) {
+                       event.ignore();
+                       hide();
+                       return;
+               }
                logger.log(logger.HIGH, "Entering NeverNote.closeEvent");
                waitCursor(true);
                
@@ -860,17 +927,18 @@ public class NeverNote extends QMainWindow{
                externalFileEditedSaver();
                if (Global.isConnected && Global.synchronizeOnClose()) {
                        setMessage(tr("Performing synchronization before closing."));
+                       syncRunner.syncNeeded = true;
                        syncRunner.addWork("SYNC");
+                       syncRunner.addWork("STOP");
+               } else {
+                       syncRunner.addWork("STOP");
+                       syncRunner.keepRunning = false;
                }
                setMessage("Closing Program.");
                threadMonitorTimer.stop();
 
-               syncRunner.addWork("STOP");
-               syncRunner.keepRunning = false;
                thumbnailRunner.addWork("STOP");
-               syncRunner.keepRunning = false;
                indexRunner.addWork("STOP");
-               syncRunner.keepRunning = false;
                saveNote();
                listManager.stop();
                saveWindowState();
@@ -912,19 +980,28 @@ public class NeverNote extends QMainWindow{
                Global.keepRunning = false;
                try {
                        logger.log(logger.MEDIUM, "Waiting for indexThread to stop");
-                       indexRunner.thread().join(50);
-                       logger.log(logger.MEDIUM, "Index thread has stopped");
+                       if (indexRunner.thread().isAlive())
+                               indexRunner.thread().join(50);
+                       if (!indexRunner.thread().isAlive())
+                               logger.log(logger.MEDIUM, "Index thread has stopped");
+                       else {
+                               logger.log(logger.MEDIUM, "Index thread still running - interrupting");
+                               indexRunner.thread().interrupt();
+                       }
                } catch (InterruptedException e1) {
                        e1.printStackTrace();
                }
+               
+               syncRunner.addWork("STOP");
                if (!syncRunner.isIdle()) {
-                       try {
+                       //try {
                                logger.log(logger.MEDIUM, "Waiting for syncThread to stop");
-                               syncThread.join();
+                               System.out.println(tr("Synchronizing.  Please be patient."));
+                               while (!syncRunner.isIdle());
                                logger.log(logger.MEDIUM, "Sync thread has stopped");
-                       } catch (InterruptedException e1) {
-                               e1.printStackTrace();
-                       }
+                       //} catch (InterruptedException e1) {
+                       //      e1.printStackTrace();
+                       //}
                }
 
                if (encryptOnShutdown) {
@@ -933,28 +1010,58 @@ public class NeverNote extends QMainWindow{
                if (decryptOnShutdown) {
                        decryptOnShutdown();
                }
+               try {
+                       Global.getFileManager().purgeResDirectory(false);
+               } catch (InitializationException e) {
+                       System.out.println(tr("Empty res directory purge failed"));
+                       e.printStackTrace();
+               }
                logger.log(logger.HIGH, "Leaving NeverNote.closeEvent");
        }
 
+       @SuppressWarnings("unused")
+       private void closeNeverNote() {
+               closeAction = true;
+               close();
+       }
        public void setMessage(String s) {
                logger.log(logger.HIGH, "Entering NeverNote.setMessage");
+               
+               statusBar.show();
                logger.log(logger.HIGH, "Message: " +s);
                statusBar.showMessage(s);
                emitLog.add(s);
+               
+
+               messageTimer.stop();
+               messageTimer.setSingleShot(true);
+               messageTimer.start();
+               
+               
                logger.log(logger.HIGH, "Leaving NeverNote.setMessage");
        }
+       
+       private void clearMessage() {
+               statusBar.clearMessage();
+               statusBar.hide();
+       }
                
        private void waitCursor(boolean wait) {
-//             if (wait)
-//                     QApplication.setOverrideCursor(new QCursor(Qt.CursorShape.WaitCursor));
-//             else
-//                     QApplication.restoreOverrideCursor();
+               if (wait) {
+                       if (QApplication.overrideCursor() == null)
+                               QApplication.setOverrideCursor(new QCursor(Qt.CursorShape.WaitCursor));
+               }
+               else {
+                       while (QApplication.overrideCursor() != null)
+                               QApplication.restoreOverrideCursor();
+               }
        }
        
        private void setupIndexListeners() {
-               indexRunner.noteSignal.noteIndexed.connect(this, "indexThreadComplete(String)");
-               indexRunner.resourceSignal.resourceIndexed.connect(this, "indexThreadComplete(String)");
-//                     indexRunner.threadSignal.indexNeeded.connect(listManager, "setIndexNeeded(String, String, Boolean)");
+//             indexRunner.noteSignal.noteIndexed.connect(this, "indexThreadComplete(String)");
+//             indexRunner.resourceSignal.resourceIndexed.connect(this, "indexThreadComplete(String)");
+               indexRunner.signal.indexStarted.connect(this, "indexStarted()");
+               indexRunner.signal.indexFinished.connect(this, "indexComplete()");
        }
        private void setupSyncSignalListeners() {
                syncRunner.tagSignal.listChanged.connect(this, "tagIndexUpdated()");
@@ -971,6 +1078,7 @@ public class NeverNote extends QMainWindow{
                syncRunner.noteSignal.noteChanged.connect(this, "invalidateNoteCache(String, String)");
                syncRunner.resourceSignal.resourceGuidChanged.connect(this, "noteResourceGuidChanged(String,String,String)");
                syncRunner.noteSignal.noteDownloaded.connect(listManager, "noteDownloaded(Note)");
+               syncRunner.noteSignal.notebookChanged.connect(this, "updateNoteNotebook(String, String)");
                
                syncRunner.syncSignal.refreshLists.connect(this, "refreshLists()");
        }
@@ -1017,6 +1125,7 @@ public class NeverNote extends QMainWindow{
                indexTimer.start(indexTime);  // reset indexing timer
         
         settings.exec();
+        indexRunner.indexAttachmentsLocally = Global.indexAttachmentsLocally();
         if (Global.showTrayIcon())
                trayIcon.show();
         else
@@ -1035,6 +1144,8 @@ public class NeverNote extends QMainWindow{
 //        if (!dateFormat.equals(Global.getDateFormat()) ||
 //                     !timeFormat.equals(Global.getTimeFormat())) {
                noteCache.clear();
+               readOnlyCache.clear();
+               inkNoteCache.clear();
                noteIndexUpdated(true);
 //        }
         
@@ -1065,8 +1176,15 @@ public class NeverNote extends QMainWindow{
        }    
        // Load the style sheet
        private void loadStyleSheet() {
-               String fileName = Global.getFileManager().getQssDirPath("default.qss");
+               String fileName = Global.getFileManager().getQssDirPathUser("default.qss");
+               fileName = Global.getFileManager().getQssDirPath("default.qss");
                QFile file = new QFile(fileName);
+               
+               // If a user default.qss doesn't exist, we use the one shipped with NeverNote
+               if (!file.exists()) {
+                       fileName = Global.getFileManager().getQssDirPath("default.qss");
+                       file = new QFile(fileName);
+               }
                file.open(OpenModeFlag.ReadOnly);
                String styleSheet = file.readAll().toString();
                file.close();
@@ -1136,9 +1254,9 @@ public class NeverNote extends QMainWindow{
     // Setup the tree containing the user's notebooks.
     private void initializeNotebookTree() {       
        logger.log(logger.HIGH, "Entering NeverNote.initializeNotebookTree");
-       notebookTree.itemSelectionChanged.connect(this, "notebookTreeSelection()");
+//     notebookTree.itemClicked.connect(this, "notebookTreeSelection()");
+       notebookTree.selectionSignal.connect(this, "notebookTreeSelection()");
        listManager.notebookSignal.refreshNotebookTreeCounts.connect(notebookTree, "updateCounts(List, List)");
- //    notebookTree.resize(Global.getSize("notebookTree"));
        logger.log(logger.HIGH, "Leaving NeverNote.initializeNotebookTree");
     }   
     // Listener when a notebook is selected
@@ -1155,31 +1273,41 @@ public class NeverNote extends QMainWindow{
                menuBar.noteRestoreAction.setVisible(false);            
        menuBar.notebookEditAction.setEnabled(true);
        menuBar.notebookDeleteAction.setEnabled(true);
+       menuBar.notebookPublishAction.setEnabled(true);
+       menuBar.notebookShareAction.setEnabled(true);
+       menuBar.notebookIconAction.setEnabled(true);
+       menuBar.notebookStackAction.setEnabled(true);
        List<QTreeWidgetItem> selections = notebookTree.selectedItems();
-       QTreeWidgetItem currentSelection;
        selectedNotebookGUIDs.clear();
-       if (!Global.mimicEvernoteInterface) {
-               for (int i=0; i<selections.size(); i++) {
-                       currentSelection = selections.get(i);
-                       selectedNotebookGUIDs.add(currentSelection.text(2));
-               }
-       
-               
-               // There is the potential for no notebooks to be selected if this 
-               // happens then we make it look like all notebooks were selecetd.
-               // If that happens, just select the "all notebooks"
-               selections = notebookTree.selectedItems();
-               if (selections.size()==0) {
-                       selectedNotebookGUIDs.clear();
-                       menuBar.notebookEditAction.setEnabled(false);
-                       menuBar.notebookDeleteAction.setEnabled(false);
-               }
+               String guid = "";
+               String stackName = "";
+               if (selections.size() > 0) {
+               guid = (selections.get(0).text(2));
+               stackName = selections.get(0).text(0);
+       }
+               if (!Global.mimicEvernoteInterface) {
+                       // If no notebooks are selected, we make it look like the "all notebooks" one was selected
+                       if (selections.size()==0) {
+                               selectedNotebookGUIDs.clear();
+                               for (int i=0; i < listManager.getNotebookIndex().size(); i++) {
+                                       selectedNotebookGUIDs.add(listManager.getNotebookIndex().get(i).getGuid());
+                               }
+                               menuBar.notebookEditAction.setEnabled(false);
+                               menuBar.notebookDeleteAction.setEnabled(false);
+                               menuBar.notebookStackAction.setEnabled(false);
+                               menuBar.notebookIconAction.setEnabled(false);
+                       }
+               }
+       if (!guid.equals("") && !guid.equals("STACK")) {
+               selectedNotebookGUIDs.add(guid);
+               menuBar.notebookIconAction.setEnabled(true);
        } else {
-               String guid = "";
-               if (selections.size() > 0)
-                       guid = (selections.get(0).text(2));
-               if (!guid.equals(""))
-                       selectedNotebookGUIDs.add(guid);
+               menuBar.notebookIconAction.setEnabled(true);
+                       for (int j=0; j<listManager.getNotebookIndex().size(); j++) {
+                               Notebook book = listManager.getNotebookIndex().get(j);
+                               if (book.getStack() != null && book.getStack().equalsIgnoreCase(stackName))
+                                       selectedNotebookGUIDs.add(book.getGuid());
+                       }
        }
        listManager.setSelectedNotebooks(selectedNotebookGUIDs);
        listManager.loadNotesIndex();
@@ -1200,7 +1328,12 @@ public class NeverNote extends QMainWindow{
        // Triggered when the notebook DB has been updated
        private void notebookIndexUpdated() {
                logger.log(logger.HIGH, "Entering NeverNote.notebookIndexUpdated");
-               if (selectedNotebookGUIDs == null)
+       
+               // Get the possible icons
+               HashMap<String, QIcon> icons = conn.getNotebookTable().getAllIcons();
+       notebookTree.setIcons(icons);
+       
+       if (selectedNotebookGUIDs == null)
                        selectedNotebookGUIDs = new ArrayList<String>();
                List<Notebook> books = conn.getNotebookTable().getAll();
                for (int i=books.size()-1; i>=0; i--) {
@@ -1271,29 +1404,90 @@ public class NeverNote extends QMainWindow{
        }
        // Edit an existing notebook
        @SuppressWarnings("unused")
+       private void stackNotebook() {
+               logger.log(logger.HIGH, "Entering NeverNote.stackNotebook");
+               StackNotebook edit = new StackNotebook();
+               
+               List<QTreeWidgetItem> selections = notebookTree.selectedItems();
+               QTreeWidgetItem currentSelection;
+               for (int i=0; i<selections.size(); i++) {
+                       currentSelection = selections.get(0);
+                       String guid = currentSelection.text(2);
+                       if (guid.equalsIgnoreCase("")) {
+                                QMessageBox.critical(this, tr("Unable To Stack") ,tr("You can't stack the \"All Notebooks\" item."));
+                                return;
+                       }
+                       if (guid.equalsIgnoreCase("STACK")) {
+                                QMessageBox.critical(this, tr("Unable To Stack") ,tr("You can't stack a stack."));
+                                return;
+                       }
+               }
+
+               edit.setStackNames(conn.getNotebookTable().getAllStackNames());
+
+               
+               edit.exec();
+       
+               if (!edit.okPressed())
+                       return;
+        
+               String stack = edit.getStackName();
+               
+               for (int i=0; i<selections.size(); i++) {
+                       currentSelection = selections.get(i);
+                       String guid = currentSelection.text(2);
+                       listManager.updateNotebookStack(guid, stack);
+               }
+               notebookIndexUpdated();
+               logger.log(logger.HIGH, "Leaving NeverNote.stackNotebook");
+       }
+       // Edit an existing notebook
+       @SuppressWarnings("unused")
        private void editNotebook() {
                logger.log(logger.HIGH, "Entering NeverNote.editNotebook");
                NotebookEdit edit = new NotebookEdit();
-               edit.setTitle(tr("Edit Notebook"));
-               edit.setLocalCheckboxEnabled(false);
+               
                List<QTreeWidgetItem> selections = notebookTree.selectedItems();
                QTreeWidgetItem currentSelection;
                currentSelection = selections.get(0);
                edit.setNotebook(currentSelection.text(0));
-               edit.setNotebooks(listManager.getNotebookIndex());
-
+               
                String guid = currentSelection.text(2);
-               for (int i=0; i<listManager.getNotebookIndex().size(); i++) {
-                       if (listManager.getNotebookIndex().get(i).getGuid().equals(guid)) {
-                               edit.setDefaultNotebook(listManager.getNotebookIndex().get(i).isDefaultNotebook());
-                               i=listManager.getNotebookIndex().size();
+               if (!guid.equalsIgnoreCase("STACK")) {
+                       edit.setTitle(tr("Edit Notebook"));
+                       edit.setNotebooks(listManager.getNotebookIndex());
+                       edit.setLocalCheckboxEnabled(false);
+                       for (int i=0; i<listManager.getNotebookIndex().size(); i++) {
+                               if (listManager.getNotebookIndex().get(i).getGuid().equals(guid)) {
+                                       edit.setDefaultNotebook(listManager.getNotebookIndex().get(i).isDefaultNotebook());
+                                       i=listManager.getNotebookIndex().size();
+                               }
                        }
+               } else {
+                       edit.setTitle(tr("Edit Stack"));
+                       edit.setStacks(conn.getNotebookTable().getAllStackNames());
+                       edit.hideLocalCheckbox();
+                       edit.hideDefaultCheckbox();
                }
+               
                edit.exec();
        
                if (!edit.okPressed())
                        return;
         
+               
+               if (guid.equalsIgnoreCase("STACK")) {
+                       conn.getNotebookTable().renameStacks(currentSelection.text(0), edit.getNotebook());
+                       for (int j=0; j<listManager.getNotebookIndex().size(); j++) {
+                               if (listManager.getNotebookIndex().get(j).getStack() != null && 
+                                       listManager.getNotebookIndex().get(j).getStack().equalsIgnoreCase(currentSelection.text(0)))
+                                               listManager.getNotebookIndex().get(j).setStack(edit.getNotebook());
+                       }
+                       conn.getNotebookTable().renameStacks(currentSelection.text(0), edit.getNotebook());
+                       currentSelection.setText(0, edit.getNotebook());
+                       return;
+               }
+               
                updateListNotebookName(currentSelection.text(0), edit.getNotebook());
                currentSelection.setText(0, edit.getNotebook());
                
@@ -1307,6 +1501,11 @@ public class NeverNote extends QMainWindow{
                                        conn.getNotebookTable().setDefaultNotebook(listManager.getNotebookIndex().get(i).getGuid());
                                }
                                conn.getNotebookTable().updateNotebook(listManager.getNotebookIndex().get(i), true);
+                               if (conn.getNotebookTable().isLinked(listManager.getNotebookIndex().get(i).getGuid())) {
+                                       LinkedNotebook linkedNotebook = conn.getLinkedNotebookTable().getByNotebookGuid(listManager.getNotebookIndex().get(i).getGuid());
+                                       linkedNotebook.setShareName(edit.getNotebook());
+                                       conn.getLinkedNotebookTable().updateNotebook(linkedNotebook, true);
+                               }
                                i=listManager.getNotebookIndex().size();
                        }
                }
@@ -1323,13 +1522,85 @@ public class NeverNote extends QMainWindow{
                                nbooks.add(listManager.getNotebookIndex().get(i));
                }
                
-               browserWindow.setNotebookList(nbooks);
+               
+               FilterEditorNotebooks notebookFilter = new FilterEditorNotebooks(conn, logger);
+               List<Notebook> filteredBooks = notebookFilter.getValidNotebooks(currentNote, listManager.getNotebookIndex());
+               browserWindow.setNotebookList(filteredBooks);
+               Iterator<String> set = externalWindows.keySet().iterator();
+               while(set.hasNext())
+                       externalWindows.get(set.next()).getBrowserWindow().setNotebookList(filteredBooks);
                logger.log(logger.HIGH, "Leaving NeverNote.editNotebook");
        }
+       // Publish a notebook
+       @SuppressWarnings("unused")
+       private void publishNotebook() {
+               List<QTreeWidgetItem> selections = notebookTree.selectedItems();
+               QTreeWidgetItem currentSelection;
+               currentSelection = selections.get(0);
+               String guid = currentSelection.text(2);
+
+               if (guid.equalsIgnoreCase("STACK") || guid.equalsIgnoreCase(""))
+                       return;
+               
+               Notebook n = null;
+               int position = 0;
+               for (int i=0; i<listManager.getNotebookIndex().size(); i++) {
+                       if (guid.equals(listManager.getNotebookIndex().get(i).getGuid())) {
+                               n = listManager.getNotebookIndex().get(i);
+                               position = i;
+                               i = listManager.getNotebookIndex().size();
+                       }
+               }
+               if (n == null)
+                       return;
+               
+               PublishNotebook publish = new PublishNotebook(Global.username, Global.getServer(), n);
+               publish.exec();
+               
+               if (!publish.okClicked()) 
+                       return;
+               
+               Publishing p = publish.getPublishing();
+               boolean isPublished = !publish.isStopPressed();
+               conn.getNotebookTable().setPublishing(n.getGuid(), isPublished, p);
+               n.setPublished(isPublished);
+               n.setPublishing(p);
+               listManager.getNotebookIndex().set(position, n);
+               notebookIndexUpdated();
+       }
+       // Publish a notebook
+       @SuppressWarnings("unused")
+       private void shareNotebook() {
+               List<QTreeWidgetItem> selections = notebookTree.selectedItems();
+               QTreeWidgetItem currentSelection;
+               currentSelection = selections.get(0);
+               String guid = currentSelection.text(2);
+
+               if (guid.equalsIgnoreCase("STACK") || guid.equalsIgnoreCase(""))
+                       return;
+               
+               Notebook n = null;;
+               for (int i=0; i<listManager.getNotebookIndex().size(); i++) {
+                       if (guid.equals(listManager.getNotebookIndex().get(i).getGuid())) {
+                               n = listManager.getNotebookIndex().get(i);
+                               i = listManager.getNotebookIndex().size();
+                       }
+               }
+                               
+               String authToken = null;
+               if (syncRunner.isConnected)
+                       authToken = syncRunner.authToken;
+               ShareNotebook share = new ShareNotebook(n.getName(), conn, n, syncRunner);
+               share.exec();
+               
+       }
+
        // Delete an existing notebook
        @SuppressWarnings("unused")
        private void deleteNotebook() {
                logger.log(logger.HIGH, "Entering NeverNote.deleteNotebook");
+               boolean stacksFound = false;
+               boolean notebooksFound = false;
                boolean assigned = false;
                // Check if any notes have this notebook
                List<QTreeWidgetItem> selections = notebookTree.selectedItems();
@@ -1337,13 +1608,18 @@ public class NeverNote extends QMainWindow{
                QTreeWidgetItem currentSelection;
                currentSelection = selections.get(i);
                String guid = currentSelection.text(2);
-               for (int j=0; j<listManager.getNoteIndex().size(); j++) {
-                       String noteGuid = listManager.getNoteIndex().get(j).getNotebookGuid();
-                       if (noteGuid.equals(guid)) {
-                               assigned = true;
-                               j=listManager.getNoteIndex().size();
-                               i=selections.size();
+               if (!guid.equalsIgnoreCase("STACK")) {
+                       notebooksFound = true;
+                       for (int j=0; j<listManager.getNoteIndex().size(); j++) {
+                               String noteGuid = listManager.getNoteIndex().get(j).getNotebookGuid();
+                               if (noteGuid.equals(guid)) {
+                                       assigned = true;
+                                       j=listManager.getNoteIndex().size();
+                                       i=selections.size();
+                               }
                        }
+               } else {
+                       stacksFound = true;
                }
         }
                if (assigned) {
@@ -1358,7 +1634,18 @@ public class NeverNote extends QMainWindow{
                }
         
         // If all notebooks are clear, verify the delete
-               if (QMessageBox.question(this, tr("Confirmation"), tr("Delete the selected notebooks?"),
+               String msg1 = new String(tr("Delete selected notebooks?"));
+               String msg2 = new String(tr("Remove selected stacks (notebooks will not be deleted)?"));
+               String msg3 = new String(tr("Delete selected notebooks & remove stacks? Notebooks under the stacks are" +
+                               " not deleted unless selected?"));
+               String msg = "";
+               if (stacksFound && notebooksFound)
+                       msg = msg3;
+               if (!stacksFound && notebooksFound)
+                       msg = msg1;
+               if (stacksFound && !notebooksFound)
+                       msg = msg2;
+               if (QMessageBox.question(this, tr("Confirmation"), msg,
                        QMessageBox.StandardButton.Yes, 
                        QMessageBox.StandardButton.No)==StandardButton.No.value()) {
                        return;
@@ -1369,16 +1656,19 @@ public class NeverNote extends QMainWindow{
                QTreeWidgetItem currentSelection;
                currentSelection = selections.get(i);
                String guid = currentSelection.text(2);
-               conn.getNotebookTable().expungeNotebook(guid, true);
-               listManager.deleteNotebook(guid);
+               if (currentSelection.text(2).equalsIgnoreCase("STACK")) {
+                               conn.getNotebookTable().renameStacks(currentSelection.text(0), "");
+                               listManager.renameStack(currentSelection.text(0), "");
+               } else {
+                       conn.getNotebookTable().expungeNotebook(guid, true);
+                       listManager.deleteNotebook(guid);
+               }
         }
-//        for (int i=<dbRunner.getLocalNotebooks().size()-1; i>=0; i--) {
- //            if (dbRunner.getLocalNotebooks().get(i).equals(arg0))
- //       }
-        notebookTreeSelection();
-        notebookTree.load(listManager.getNotebookIndex(), listManager.getLocalNotebooks());
-        listManager.countNotebookResults(listManager.getNoteIndex());
-//             notebookTree.updateCounts(listManager.getNotebookIndex(), listManager.getNotebookCounter());
+
+               notebookIndexUpdated();
+//        notebookTreeSelection();
+//        notebookTree.load(listManager.getNotebookIndex(), listManager.getLocalNotebooks());
+//        listManager.countNotebookResults(listManager.getNoteIndex());
         logger.log(logger.HIGH, "Entering NeverNote.deleteNotebook");
        }
        // A note's notebook has been updated
@@ -1453,6 +1743,7 @@ public class NeverNote extends QMainWindow{
                listManager.loadNotesIndex();
                notebookIndexUpdated();
                noteIndexUpdated(false);
+               reloadTagTree(true);
 //             noteIndexUpdated(false);
                
                // Build a list of non-closed notebooks
@@ -1466,12 +1757,100 @@ public class NeverNote extends QMainWindow{
                        if (!found)
                                nbooks.add(listManager.getNotebookIndex().get(i));
                }
+               
+               FilterEditorNotebooks notebookFilter = new FilterEditorNotebooks(conn, logger);
+               List<Notebook> filteredBooks = notebookFilter.getValidNotebooks(currentNote, listManager.getNotebookIndex());
+               browserWindow.setNotebookList(filteredBooks);
+               
+               // Update any external windows
+               Iterator<String> set = externalWindows.keySet().iterator();
+               while(set.hasNext())
+                       externalWindows.get(set.next()).getBrowserWindow().setNotebookList(filteredBooks);
+               
                waitCursor(false);
-               browserWindow.setNotebookList(nbooks);
        }
+       // Change the notebook's icon
+       @SuppressWarnings("unused")
+       private void setNotebookIcon() {
+               boolean stackSelected = false;
+               boolean allNotebookSelected = false;
+               
+               QTreeWidgetItem currentSelection;
+               List<QTreeWidgetItem> selections = notebookTree.selectedItems();
+               if (selections.size() == 0)
+                       return;
+               
+               currentSelection = selections.get(0);   
+               String guid = currentSelection.text(2);
+               if (guid.equalsIgnoreCase(""))
+                       allNotebookSelected = true;
+               if (guid.equalsIgnoreCase("STACK"))
+                       stackSelected = true;
 
+               QIcon currentIcon = currentSelection.icon(0);
+               QIcon icon;
+               SetIcon dialog;
+               
+               if (!stackSelected && !allNotebookSelected) {
+                       icon = conn.getNotebookTable().getIcon(guid);
+                       if (icon == null) {
+                               dialog = new SetIcon(currentIcon, saveLastPath);
+                               dialog.setUseDefaultIcon(true);
+                       } else {
+                               dialog = new SetIcon(icon, saveLastPath);
+                               dialog.setUseDefaultIcon(false);
+                       }
+               } else {
+                       if (stackSelected) {
+                               icon = conn.getSystemIconTable().getIcon(currentSelection.text(0), "STACK");
+                       } else {
+                               icon = conn.getSystemIconTable().getIcon(currentSelection.text(0), "ALLNOTEBOOK");                              
+                       }
+                       if (icon == null) {
+                               dialog = new SetIcon(currentIcon, saveLastPath);
+                               dialog.setUseDefaultIcon(true);
+                       } else {
+                               dialog = new SetIcon(icon, saveLastPath);
+                               dialog.setUseDefaultIcon(false);
+                       }
+               }
+               dialog.exec();
+               if (dialog.okPressed()) {
+               saveLastPath = dialog.getPath();
+
+                       QIcon newIcon = dialog.getIcon();
+                       if (stackSelected) {
+                               conn.getSystemIconTable().setIcon(currentSelection.text(0), "STACK", newIcon, dialog.getFileType());
+                               if (newIcon == null) {
+                                       newIcon = new QIcon(iconPath+"books2.png");
+                               }
+                               currentSelection.setIcon(0,newIcon);
+                               return;
+                       }
+                       if (allNotebookSelected) {
+                               conn.getSystemIconTable().setIcon(currentSelection.text(0), "ALLNOTEBOOK", newIcon, dialog.getFileType());
+                               if (newIcon == null) {
+                                       newIcon = new QIcon(iconPath+"notebook-green.png");
+                               }
+                               currentSelection.setIcon(0,newIcon);
+                               return;
+                       }
+                       conn.getNotebookTable().setIcon(guid, newIcon, dialog.getFileType());
+                       if (newIcon == null) {
+                               boolean isPublished = false;;
+                               boolean found = false;
+                               for (int i=0; i<listManager.getNotebookIndex().size() && !found; i++) {
+                                       if (listManager.getNotebookIndex().get(i).getGuid().equals(guid)) {
+                                               isPublished = listManager.getNotebookIndex().get(i).isPublished();
+                                               found = true;
+                                       }
+                               }
+                               newIcon = notebookTree.findDefaultIcon(guid, currentSelection.text(1), listManager.getLocalNotebooks(), isPublished);
+                       }
+                       currentSelection.setIcon(0, newIcon);
+               }
        
-       
+       }
        
        
     //***************************************************************
@@ -1504,6 +1883,7 @@ public class NeverNote extends QMainWindow{
                
                logger.log(logger.HIGH, "Leaving NeverNote.addTag");
        }
+       @SuppressWarnings("unused")
        private void reloadTagTree() {
                reloadTagTree(false);
        }
@@ -1598,7 +1978,9 @@ public class NeverNote extends QMainWindow{
        // Setup the tree containing the user's tags
     private void initializeTagTree() {
        logger.log(logger.HIGH, "Entering NeverNote.initializeTagTree");
-       tagTree.itemSelectionChanged.connect(this, "tagTreeSelection()");
+//     tagTree.itemSelectionChanged.connect(this, "tagTreeSelection()");
+//     tagTree.itemClicked.connect(this, "tagTreeSelection()");
+       tagTree.selectionSignal.connect(this, "tagTreeSelection()");
        listManager.tagSignal.refreshTagTreeCounts.connect(tagTree, "updateCounts(List)");
        logger.log(logger.HIGH, "Leaving NeverNote.initializeTagTree");
     }
@@ -1622,10 +2004,12 @@ public class NeverNote extends QMainWindow{
        if (selections.size() > 0) {
                menuBar.tagEditAction.setEnabled(true);
                menuBar.tagDeleteAction.setEnabled(true);
+               menuBar.tagIconAction.setEnabled(true);
        }
        else {
                menuBar.tagEditAction.setEnabled(false);
                menuBar.tagDeleteAction.setEnabled(false);
+               menuBar.tagIconAction.setEnabled(true);
        }
        listManager.setSelectedTags(selectedTagGUIDs);
        listManager.loadNotesIndex();
@@ -1641,11 +2025,14 @@ public class NeverNote extends QMainWindow{
        logger.log(logger.HIGH, "Entering NeverNote.tagIndexUpdated");
                if (selectedTagGUIDs == null)
                        selectedTagGUIDs = new ArrayList<String>();
-//             selectedTagGUIDs.clear();  // clear out old entries
+               if (reload)
+                       listManager.reloadTagIndex();
 
                tagTree.blockSignals(true);
-               if (reload)
+               if (reload) {
+                       tagTree.setIcons(conn.getTagTable().getAllIcons());
                        tagTree.load(listManager.getTagIndex());
+               }
        for (int i=selectedTagGUIDs.size()-1; i>=0; i--) {
                boolean found = tagTree.selectGuid(selectedTagGUIDs.get(i));
                if (!found)
@@ -1766,11 +2153,44 @@ public class NeverNote extends QMainWindow{
                menuBar.noteRestoreAction.setVisible(false);
                menuBar.tagEditAction.setEnabled(false);
                menuBar.tagDeleteAction.setEnabled(false);
+               menuBar.tagIconAction.setEnabled(false);
                selectedTagGUIDs.clear();
        listManager.setSelectedTags(selectedTagGUIDs);
        tagTree.blockSignals(false);
        }
+       // Change the icon for a tag
+       @SuppressWarnings("unused")
+       private void setTagIcon() {
+               QTreeWidgetItem currentSelection;
+               List<QTreeWidgetItem> selections = tagTree.selectedItems();
+               if (selections.size() == 0)
+                       return;
+               
+               currentSelection = selections.get(0);   
+               String guid = currentSelection.text(2);
+
+               QIcon currentIcon = currentSelection.icon(0);
+               QIcon icon = conn.getTagTable().getIcon(guid);
+               SetIcon dialog;
+               if (icon == null) {
+                       dialog = new SetIcon(currentIcon, saveLastPath);
+                       dialog.setUseDefaultIcon(true);
+               } else {
+                       dialog = new SetIcon(icon, saveLastPath);
+                       dialog.setUseDefaultIcon(false);
+               }
+               dialog.exec();
+               if (dialog.okPressed()) {
+               saveLastPath = dialog.getPath();
+                       QIcon newIcon = dialog.getIcon();
+                       conn.getTagTable().setIcon(guid, newIcon, dialog.getFileType());
+                       if (newIcon == null) 
+                               newIcon = new QIcon(iconPath+"tag.png");
+                       currentSelection.setIcon(0, newIcon);
+               }
        
+       }
+
        
     //***************************************************************
     //***************************************************************
@@ -1886,6 +2306,7 @@ public class NeverNote extends QMainWindow{
        String currentGuid = selectedSavedSearchGUID;
        menuBar.savedSearchEditAction.setEnabled(true);
        menuBar.savedSearchDeleteAction.setEnabled(true);
+       menuBar.savedSearchIconAction.setEnabled(true);
        List<QTreeWidgetItem> selections = savedSearchTree.selectedItems();
        QTreeWidgetItem currentSelection;
        selectedSavedSearchGUID = "";
@@ -1912,6 +2333,7 @@ public class NeverNote extends QMainWindow{
     private void clearSavedSearchFilter() {
        menuBar.savedSearchEditAction.setEnabled(false);
        menuBar.savedSearchDeleteAction.setEnabled(false);
+       menuBar.savedSearchIconAction.setEnabled(false);
        savedSearchTree.blockSignals(true);
        savedSearchTree.clearSelection();
        savedSearchTree.blockSignals(false);
@@ -1925,6 +2347,7 @@ public class NeverNote extends QMainWindow{
                if (selectedSavedSearchGUID == null)
                        selectedSavedSearchGUID = new String();
                savedSearchTree.blockSignals(true);
+               savedSearchTree.setIcons(conn.getSavedSearchTable().getAllIcons());
        savedSearchTree.load(listManager.getSavedSearchIndex());
        savedSearchTree.selectGuid(selectedSavedSearchGUID);
        savedSearchTree.blockSignals(false);
@@ -1936,17 +2359,20 @@ public class NeverNote extends QMainWindow{
                
        menuBar.savedSearchEditAction.setEnabled(true);
        menuBar.savedSearchDeleteAction.setEnabled(true);
+       menuBar.savedSearchIconAction.setEnabled(true);
        List<QTreeWidgetItem> selections = savedSearchTree.selectedItems();
 
        if (selections.size() > 0) {
                menuBar.savedSearchEditAction.setEnabled(true);
                menuBar.savedSearchDeleteAction.setEnabled(true);
+               menuBar.savedSearchIconAction.setEnabled(true);
                selectedSavedSearchGUID = selections.get(0).text(1);
                SavedSearch s = conn.getSavedSearchTable().getSavedSearch(selectedSavedSearchGUID);
                searchField.setEditText(s.getQuery());
        } else { 
                menuBar.savedSearchEditAction.setEnabled(false);
                menuBar.savedSearchDeleteAction.setEnabled(false);
+               menuBar.savedSearchIconAction.setEnabled(false);
                selectedSavedSearchGUID = "";
                searchField.setEditText("");
        }
@@ -1968,6 +2394,38 @@ public class NeverNote extends QMainWindow{
                Global.saveWindowVisible("savedSearchTree", savedSearchTree.isVisible());
        logger.log(logger.HIGH, "Leaving NeverNote.toggleSavedSearchWindow");
     }
+       // Change the icon for a saved search
+       @SuppressWarnings("unused")
+       private void setSavedSearchIcon() {
+               QTreeWidgetItem currentSelection;
+               List<QTreeWidgetItem> selections = savedSearchTree.selectedItems();
+               if (selections.size() == 0)
+                       return;
+               
+               currentSelection = selections.get(0);   
+               String guid = currentSelection.text(1);
+
+               QIcon currentIcon = currentSelection.icon(0);
+               QIcon icon = conn.getSavedSearchTable().getIcon(guid);
+               SetIcon dialog;
+               if (icon == null) {
+                       dialog = new SetIcon(currentIcon, saveLastPath);
+                       dialog.setUseDefaultIcon(true);
+               } else {
+                       dialog = new SetIcon(icon, saveLastPath);
+                       dialog.setUseDefaultIcon(false);
+               }
+               dialog.exec();
+               if (dialog.okPressed()) {
+               saveLastPath = dialog.getPath();
+                       QIcon newIcon = dialog.getIcon();
+                       conn.getSavedSearchTable().setIcon(guid, newIcon, dialog.getFileType());
+                       if (newIcon == null) 
+                               newIcon = new QIcon(iconPath+"search.png");
+                       currentSelection.setIcon(0, newIcon);
+               }
+       
+       }
        
        
        
@@ -1981,6 +2439,7 @@ public class NeverNote extends QMainWindow{
        @SuppressWarnings("unused")
        private void databaseStatus() {
                waitCursor(true);
+               indexRunner.interrupt = true;
                int dirty = conn.getNoteTable().getDirtyCount();
                int unindexed = conn.getNoteTable().getUnindexedCount();
                DatabaseStatus status = new DatabaseStatus();
@@ -1988,6 +2447,7 @@ public class NeverNote extends QMainWindow{
                status.setUnindexed(unindexed);
                status.setNoteCount(conn.getNoteTable().getNoteCount());
                status.setNotebookCount(listManager.getNotebookIndex().size());
+               status.setUnindexedResourceCount(conn.getNoteTable().noteResourceTable.getUnindexedCount());
                status.setSavedSearchCount(listManager.getSavedSearchIndex().size());
                status.setTagCount(listManager.getTagIndex().size());
                status.setResourceCount(conn.getNoteTable().noteResourceTable.getResourceCount());
@@ -2043,15 +2503,8 @@ public class NeverNote extends QMainWindow{
        @SuppressWarnings("unused")
        private void logger() {
                logger.log(logger.HIGH, "Entering NeverNote.logger");
-               QDialog dialog = new QDialog(this);
-               QHBoxLayout layout = new QHBoxLayout();
-               QListWidget textBox = new QListWidget();
-               layout.addWidget(textBox);
-               textBox.addItems(emitLog);
-               
-               dialog.setLayout(layout);
-               dialog.setWindowTitle(tr("Mesasge Log"));
-               dialog.show();
+               LogFileDialog dialog = new LogFileDialog(emitLog);
+               dialog.exec();
                logger.log(logger.HIGH, "Leaving NeverNote.logger");
        }
        // Menu option "help/about" was selected
@@ -2096,7 +2549,76 @@ public class NeverNote extends QMainWindow{
                Global.saveWindowVisible("leftPanel", hidden);
                
        }
+       public void checkForUpdates() {
+               // Send off thread to check for a new version
+               versionChecker = new QNetworkAccessManager(this);
+               versionChecker.finished.connect(this, "upgradeFileRead(QNetworkReply)");
+               QNetworkRequest request = new QNetworkRequest();
+               request.setUrl(new QUrl(Global.getUpdatesAvailableUrl()));
+               versionChecker.get(request);
+       }
+       @SuppressWarnings("unused")
+       private void upgradeFileRead(QNetworkReply reply) {
+               if (!reply.isReadable())
+                       return;
+               
+               String winVersion = Global.version;
+               String osxVersion = Global.version;
+               String linuxVersion = Global.version;
+               String linux64Version = Global.version;
+               String version = Global.version;
+               
+               // Determine the versions available
+               QByteArray data = reply.readLine();
+               while (data != null && !reply.atEnd()) {
+                       String line = data.toString();
+                       String lineVersion;
+                       if (line.contains(":")) 
+                               lineVersion = line.substring(line.indexOf(":")+1).replace(" ", "").replace("\n", "");
+                       else
+                               lineVersion = "";
+                       if (line.toLowerCase().contains("windows")) 
+                               winVersion = lineVersion;
+                       else if (line.toLowerCase().contains("os-x")) 
+                               osxVersion = lineVersion;
+                       else if (line.toLowerCase().contains("linux amd64")) 
+                               linux64Version = lineVersion;
+                       else if (line.toLowerCase().contains("linux i386")) 
+                               linuxVersion = lineVersion;
+                       else if (line.toLowerCase().contains("default")) 
+                               version = lineVersion;
                        
+                       // Read the next line
+                       data = reply.readLine();
+               }
+               
+               // Now we need to determine what system we are on.
+               if (System.getProperty("os.name").toLowerCase().contains("windows"))
+                       version = winVersion;
+               if (System.getProperty("os.name").toLowerCase().contains("mac os"))
+                       version = osxVersion;
+               if (System.getProperty("os.name").toLowerCase().contains("Linux")) {
+                       if (System.getProperty("os.arch").contains("amd64") ||
+                               System.getProperty("os.arch").contains("x86_64"))
+                                       version = linux64Version;
+                       else
+                               version = linuxVersion;
+               }
+               
+               
+               for (String validVersion : Global.validVersions) {
+                       if (version.equals(validVersion))
+                               return;
+               }
+               
+               UpgradeAvailableDialog dialog = new UpgradeAvailableDialog();
+               dialog.exec();
+               if (dialog.remindMe())
+                       Global.setCheckVersionUpgrade(true);
+               else
+                       Global.setCheckVersionUpgrade(false);
+       }
+               
        
     //***************************************************************
     //***************************************************************
@@ -2105,21 +2627,45 @@ public class NeverNote extends QMainWindow{
     //***************************************************************  
        // Text in the search bar has been cleared
        private void searchFieldCleared() {
+               saveNote();
+               
+               // This is done because we want to force a reload of
+               // images.  Some images we may want to highlight the text.
+               readOnlyCache.clear();
+               inkNoteCache.clear();
+               noteCache.clear();
+               QWebSettings.setMaximumPagesInCache(0);
+               QWebSettings.setObjectCacheCapacities(0, 0, 0);
+        
                searchField.setEditText("");
                saveNoteColumnPositions();
                saveNoteIndexWidth();
+               noteIndexUpdated(true);
+               if (currentNote == null && listManager.getNoteIndex().size() > 0) {
+                       currentNote = listManager.getNoteIndex().get(0);
+                       currentNoteGuid = currentNote.getGuid();
+               }
+               if (currentNote != null)
+                       loadNoteBrowserInformation(browserWindow);
        }
        // text in the search bar changed.  We only use this to tell if it was cleared, 
        // otherwise we trigger off searchFieldChanged.
        @SuppressWarnings("unused")
        private void searchFieldTextChanged(String text) {
+               QWebSettings.setMaximumPagesInCache(0);
+               QWebSettings.setObjectCacheCapacities(0, 0, 0);
+
                if (text.trim().equals("")) {
                        searchFieldCleared();
                        if (searchPerformed) {
+
+                               // This is done because we want to force a reload of
+                               // images.  Some images we may want to highlight the text.
                                noteCache.clear();
+                               readOnlyCache.clear();
+                               inkNoteCache.clear();
+                               
                                listManager.setEnSearch("");
-/////                          listManager.clearNoteIndexSearch();
-                               //noteIndexUpdated(true);
                                listManager.loadNotesIndex();
                                refreshEvernoteNote(true);
                                noteIndexUpdated(false);
@@ -2131,6 +2677,8 @@ public class NeverNote extends QMainWindow{
     private void searchFieldChanged() {
        logger.log(logger.HIGH, "Entering NeverNote.searchFieldChanged");
        noteCache.clear();
+       readOnlyCache.clear();
+       inkNoteCache.clear();
        saveNoteColumnPositions();
        saveNoteIndexWidth();
        String text = searchField.currentText();
@@ -2388,41 +2936,33 @@ public class NeverNote extends QMainWindow{
 
     @SuppressWarnings("unused")
        private void updateSyncButton() {
- /*    synchronizeFrame++;
-       if (synchronizeFrame == 4) 
-               synchronizeFrame = 0;
-       synchronizeButton.setIcon(synchronizeAnimation.get(synchronizeFrame));
-       */
-/*     
-       QPixmap pix = new QPixmap(iconPath+"synchronize.png");
-       QMatrix matrix = new QMatrix();
-       synchronizeIconAngle = synchronizeIconAngle + 1.0;
-       if (synchronizeIconAngle >= 365.0)
-               synchronizeIconAngle = 0.0;
-       matrix.translate(pix.size().width()/2, pix.size().height()/2);
-               matrix.rotate( synchronizeIconAngle );
-       matrix.translate(-pix.size().width()/2, -pix.size().height()/2);
-               pix = pix.transformed(matrix, TransformationMode.SmoothTransformation);
-       synchronizeButton.setIcon(pix);
-*/
-               
-       
-       QPixmap pix = new QPixmap(iconPath+"synchronize.png");
-       QPixmap rotatedPix = new QPixmap(pix.size());
-       QPainter p = new QPainter(rotatedPix);
-
-       rotatedPix.fill(toolBar.palette().color(ColorRole.Button));
-       QSize size = pix.size();
-       p.translate(size.width()/2, size.height()/2);
-       synchronizeIconAngle = synchronizeIconAngle+1.0;
-       if (synchronizeIconAngle >= 359.0)
-               synchronizeIconAngle = 0.0;
-       p.rotate(synchronizeIconAngle);
-       p.setBackgroundMode(BGMode.OpaqueMode);
-       p.translate(-size.width()/2, -size.height()/2);
-       p.drawPixmap(0,0, pix);
-       p.end();
-       synchronizeButton.setIcon(rotatedPix);
+               
+       if (syncIcons == null) {
+               syncIcons = new ArrayList<QPixmap>();
+               double angle = 0.0;
+               synchronizeIconAngle = 0;
+               QPixmap pix = new QPixmap(iconPath+"synchronize.png");
+               syncIcons.add(pix);
+               for (int i=0; i<=360; i++) {
+                       QPixmap rotatedPix = new QPixmap(pix.size());
+                       QPainter p = new QPainter(rotatedPix);
+               rotatedPix.fill(toolBar.palette().color(ColorRole.Button));
+               QSize size = pix.size();
+               p.translate(size.width()/2, size.height()/2);
+               angle = angle+1.0;
+               p.rotate(angle);
+               p.setBackgroundMode(BGMode.OpaqueMode);
+               p.translate(-size.width()/2, -size.height()/2);
+               p.drawPixmap(0,0, pix);
+               p.end();
+               syncIcons.add(rotatedPix);
+               }
+       }
+
+       synchronizeIconAngle++;
+       if (synchronizeIconAngle > 359)
+               synchronizeIconAngle=0;
+       synchronizeButton.setIcon(syncIcons.get(synchronizeIconAngle));
        
     }
     // Synchronize with Evernote
@@ -2432,7 +2972,7 @@ public class NeverNote extends QMainWindow{
        if (!Global.isConnected)
                remoteConnect();
        if (Global.isConnected)
-               synchronizeAnimationTimer.start(10);
+               synchronizeAnimationTimer.start(5);
 //                     synchronizeAnimationTimer.start(200);
        syncTimer();
        logger.log(logger.HIGH, "Leaving NeverNote.evernoteSync");
@@ -2592,6 +3132,7 @@ public class NeverNote extends QMainWindow{
                menuBar.connectAction.setText(tr("Connect"));
                menuBar.connectAction.setToolTip(tr("Connect to Evernote"));
                menuBar.synchronizeAction.setEnabled(false);
+               Global.isConnected = false;
                synchronizeAnimationTimer.stop();
                return;
        }
@@ -2613,56 +3154,67 @@ public class NeverNote extends QMainWindow{
                } catch (FileNotFoundException e) {
                        // File not found, so we'll just get empty strings anyway. 
                }
+
+               if (Global.getProxyValue("url").equals("")) {
+                       System.setProperty("http.proxyHost","") ;
+                       System.setProperty("http.proxyPort", "") ;
+                       System.setProperty("https.proxyHost","") ;
+                       System.setProperty("https.proxyPort", "") ;         
+               } else {
+                       // PROXY
+                       System.setProperty("http.proxyHost",Global.getProxyValue("url")) ;
+                       System.setProperty("http.proxyPort", Global.getProxyValue("port")) ;
+                       System.setProperty("https.proxyHost",Global.getProxyValue("url")) ;
+                       System.setProperty("https.proxyPort", Global.getProxyValue("port")) ;
+                       if (Global.getProxyValue("userid").equals("")) {
+                               Authenticator.setDefault(new Authenticator() {
+                       @Override
+                       protected PasswordAuthentication getPasswordAuthentication() {
+                               return new
+                               PasswordAuthentication(Global.getProxyValue("userid"),Global.getProxyValue("password").toCharArray());
+                               }
+                       });
+               }
+       }
+
+               syncRunner.userStoreUrl = Global.userStoreUrl;
+               syncRunner.noteStoreUrl = Global.noteStoreUrl;
+               syncRunner.noteStoreUrlBase = Global.noteStoreUrlBase;
+
                String userid = aes.getUserid();
                String password = aes.getPassword();
                if (!userid.equals("") && !password.equals("")) {
                Global.username = userid;
                Global.password = password;
+                       syncRunner.username = Global.username;
+                       syncRunner.password = Global.password;
+               syncRunner.enConnect();
                }               
 
-        // Show the login dialog box
-               if (!Global.automaticLogin() || userid.equals("")|| password.equals("")) {
-                       LoginDialog login = new LoginDialog();
-                       login.exec();
+               Global.isConnected = syncRunner.isConnected;
                
-                       if (!login.okPressed()) {
-                               return;
-                       }
+               if (!Global.isConnected) {
+                       // Show the login dialog box
+                       if (!Global.automaticLogin() || userid.equals("")|| password.equals("")) {
+                               LoginDialog login = new LoginDialog();
+                               login.exec();
+               
+                               if (!login.okPressed()) {
+                                       return;
+                               }
         
-                       Global.username = login.getUserid();
-                       Global.password = login.getPassword();
+                               Global.username = login.getUserid();
+                               Global.password = login.getPassword();
+                       }
+                       syncRunner.username = Global.username;
+                       syncRunner.password = Global.password;
+                       syncRunner.enConnect();
+                       Global.isConnected = syncRunner.isConnected;
                }
-               syncRunner.username = Global.username;
-               syncRunner.password = Global.password;
-               syncRunner.userStoreUrl = Global.userStoreUrl;
-               syncRunner.noteStoreUrl = Global.noteStoreUrl;
-               syncRunner.noteStoreUrlBase = Global.noteStoreUrlBase;
                
-           if (Global.getProxyValue("url").equals("")) {
-               System.setProperty("http.proxyHost","") ;
-               System.setProperty("http.proxyPort", "") ;
-               System.setProperty("https.proxyHost","") ;
-               System.setProperty("https.proxyPort", "") ;         
-           } else {
-                       // PROXY
-               System.setProperty("http.proxyHost",Global.getProxyValue("url")) ;
-               System.setProperty("http.proxyPort", Global.getProxyValue("port")) ;
-               System.setProperty("https.proxyHost",Global.getProxyValue("url")) ;
-               System.setProperty("https.proxyPort", Global.getProxyValue("port")) ;
-        
-               if (Global.getProxyValue("userid").equals("")) {
-                       Authenticator.setDefault(new Authenticator() {
-                               @Override
-                               protected PasswordAuthentication getPasswordAuthentication() {
-                                       return new
-                                       PasswordAuthentication(Global.getProxyValue("userid"),Global.getProxyValue("password").toCharArray());
-                                       }});
-                       }
-               }
-               
-               
-               syncRunner.enConnect();
-               Global.isConnected = syncRunner.isConnected;
+               if (!Global.isConnected)
+                       return;
                setupOnlineMenu();
                setupConnectMenuOptions();
                logger.log(logger.HIGH, "Leaving NeverNote.remoteConnect");
@@ -2691,10 +3243,10 @@ public class NeverNote extends QMainWindow{
     @SuppressWarnings("unused")
        private void attributeTreeClicked(QTreeWidgetItem item, Integer integer) {
        
-       clearTagFilter();
-       clearNotebookFilter();
+//     clearTagFilter();
+//     clearNotebookFilter();
        clearTrashFilter();
-       clearSavedSearchFilter();
+//     clearSavedSearchFilter();
 
        if (attributeTreeSelected == null || item.nativeId() != attributeTreeSelected.nativeId()) {
                if (item.childCount() > 0) {
@@ -2872,6 +3424,23 @@ public class NeverNote extends QMainWindow{
        refreshEvernoteNoteList();
        logger.log(logger.HIGH, "Calling note table reload in NeverNote.noteIndexUpdated() - "+reload);
        noteTableView.load(reload);
+       if (currentNoteGuid == null || currentNoteGuid.equals("")) {
+               int pos;
+               if (noteTableView.proxyModel.sortOrder() == SortOrder.AscendingOrder)
+                       pos = noteTableView.proxyModel.rowCount();
+               else 
+                       pos = 1;
+               if (noteTableView.proxyModel.rowCount() == 0)
+                       pos = 0;
+               if (pos>0)      {
+                       QModelIndex i = noteTableView.proxyModel.index(pos-1, Global.noteTableGuidPosition);
+                       if (i!=null) {
+                               currentNoteGuid = (String)i.data();
+                               noteTableView.selectRow(pos-1);
+                       }
+               }
+       }               
+       showColumns();
        scrollToGuid(currentNoteGuid);
                logger.log(logger.HIGH, "Leaving NeverNote.noteIndexUpdated");
     }
@@ -2909,13 +3478,10 @@ public class NeverNote extends QMainWindow{
                        browserWindow.setDisabled(true);
                } 
                
-               if (saveCurrentNoteGuid.equals("") && listManager.getNoteIndex().size() > 0) {
-                       currentNote = listManager.getNoteIndex().get(listManager.getNoteIndex().size()-1);
-                       currentNoteGuid = currentNote.getGuid();
-                       refreshEvernoteNote(true);
+               if (!saveCurrentNoteGuid.equals("")) {
+                       refreshEvernoteNote(false);
                } else {
-                       //we can reload if note not dirty
-                       refreshEvernoteNote(!noteDirty);
+                       currentNoteGuid = "";
                }
                reloadTagTree(false);
 
@@ -3058,6 +3624,7 @@ public class NeverNote extends QMainWindow{
        }
        logger.log(logger.HIGH, "Leaving NeverNote.updateListAuthor");
     }
+       @SuppressWarnings("unused")
        private void updateListGuid(String oldGuid, String newGuid) {
        logger.log(logger.HIGH, "Entering NeverNote.updateListTitle");
 
@@ -3175,7 +3742,6 @@ public class NeverNote extends QMainWindow{
        }
        logger.log(logger.HIGH, "Leaving NeverNote.updateListDateCreated");
     }
-    @SuppressWarnings("unused")
        private void updateListDateChanged(String guid, QDateTime date) {
        logger.log(logger.HIGH, "Entering NeverNote.updateListDateChanged");
 
@@ -3200,7 +3766,6 @@ public class NeverNote extends QMainWindow{
        logger.log(logger.HIGH, "Leaving NeverNote.updateListDateChanged");
     }  
     // Redo scroll
-    @SuppressWarnings("unused")
        private void scrollToCurrentGuid() {
        //scrollToGuid(currentNoteGuid);
        List<QModelIndex> selections = noteTableView.selectionModel().selectedRows();
@@ -3300,7 +3865,12 @@ public class NeverNote extends QMainWindow{
        saveNoteColumnPositions();
        saveNoteIndexWidth();
        saveWindowState();
-       Global.setListView(Global.View_List_Narrow);
+               int sortCol = noteTableView.proxyModel.sortColumn();
+               int sortOrder = noteTableView.proxyModel.sortOrder().value();
+               Global.setSortColumn(sortCol);
+               Global.setSortOrder(sortOrder);
+
+               Global.setListView(Global.View_List_Narrow);
        
        menuBar.wideListView.blockSignals(true);
        menuBar.narrowListView.blockSignals(true);
@@ -3317,12 +3887,22 @@ public class NeverNote extends QMainWindow{
        noteTableView.repositionColumns();
        noteTableView.resizeColumnWidths();
        noteTableView.resizeRowHeights();
+       
+       sortCol = Global.getSortColumn();
+               sortOrder = Global.getSortOrder();
+               noteTableView.sortByColumn(sortCol, SortOrder.resolve(sortOrder));
+               
        showColumns();
        noteTableView.load(false);
        scrollToCurrentGuid();
     }
     public void wideListView() {
-       saveWindowState();
+               int sortCol = noteTableView.proxyModel.sortColumn();
+               int sortOrder = noteTableView.proxyModel.sortOrder().value();
+               Global.setSortColumn(sortCol);
+               Global.setSortOrder(sortOrder);
+
+               saveWindowState();
        saveNoteColumnPositions();
        saveNoteIndexWidth();
        Global.setListView(Global.View_List_Wide);
@@ -3342,6 +3922,11 @@ public class NeverNote extends QMainWindow{
        noteTableView.repositionColumns();
        noteTableView.resizeColumnWidths();
        noteTableView.resizeRowHeights();
+       
+       sortCol = Global.getSortColumn();
+               sortOrder = Global.getSortOrder();
+               noteTableView.sortByColumn(sortCol, SortOrder.resolve(sortOrder));
+       
        showColumns();
        noteTableView.load(false);
        scrollToCurrentGuid();
@@ -3353,14 +3938,12 @@ public class NeverNote extends QMainWindow{
     //** External editor window functions                    
     //***************************************************************
     //***************************************************************
-    @SuppressWarnings("unused")
        private void listDoubleClick() {
        saveNote();
        if (externalWindows.containsKey(currentNoteGuid)) {
                externalWindows.get(currentNoteGuid).raise();
                return;
        }
-       
        // We have a new external editor to create
        QIcon appIcon = new QIcon(iconPath+"nevernote.png");
        ExternalBrowse newBrowser = new ExternalBrowse(conn);
@@ -3386,7 +3969,7 @@ public class NeverNote extends QMainWindow{
                browserWindow.setTitle(text);
        }
     }
-    @SuppressWarnings("unused")
+    @SuppressWarnings({ "rawtypes", "unused" })
        private void externalWindowTagsEdited(String guid, List values) {
        StringBuffer line = new StringBuffer(100);
        for (int i=0; i<values.size(); i++) {
@@ -3413,6 +3996,7 @@ public class NeverNote extends QMainWindow{
     @SuppressWarnings("unused")
        private void setNoteDirty() {
                logger.log(logger.EXTREME, "Entering NeverNote.setNoteDirty()");
+               
                // Find if the note is being edited externally.  If it is, update it.
                if (externalWindows.containsKey(currentNoteGuid)) {
                        QTextCodec codec = QTextCodec.codecForName("UTF-8");
@@ -3460,6 +4044,7 @@ public class NeverNote extends QMainWindow{
                browserWindow.getBrowser().setContent(unicode);
        } 
        if (save) {
+               thumbnailRunner.addWork("GENERATE "+ guid);
                saveNote(guid, browser);
        }
        
@@ -3467,6 +4052,7 @@ public class NeverNote extends QMainWindow{
     private void saveNote() {
        if (noteDirty) {
                saveNote(currentNoteGuid, browserWindow);
+               thumbnailRunner.addWork("GENERATE "+ currentNoteGuid);
                noteDirty = false;
        }
     }
@@ -3500,13 +4086,15 @@ public class NeverNote extends QMainWindow{
     // Get a note from Evernote (and put it in the browser)
        private void refreshEvernoteNote(boolean reload) {
                logger.log(logger.HIGH, "Entering NeverNote.refreshEvernoteNote");
+               
                if (Global.disableViewing) {
                        browserWindow.setEnabled(false);
                        return;
                }
                inkNote = false;
-               if (!Global.showDeleted)
-                       browserWindow.setReadOnly(false);
+               readOnly = false;
+               if (Global.showDeleted)
+                       readOnly = true;
                Global.cryptCounter =0;
                if (currentNoteGuid.equals("")) {
                        browserWindow.setReadOnly(true);
@@ -3525,8 +4113,9 @@ public class NeverNote extends QMainWindow{
                
                loadNoteBrowserInformation(browserWindow);
        }
+
        private void loadNoteBrowserInformation(BrowserWindow browser) {
-               NoteFormatter formatter = new NoteFormatter(logger, conn, tempFiles);
+               NoteFormatter   formatter = new NoteFormatter(logger, conn, tempFiles);
                formatter.setNote(currentNote, Global.pdfPreview());
                formatter.setHighlight(listManager.getEnSearch());
                QByteArray js;
@@ -3547,23 +4136,48 @@ public class NeverNote extends QMainWindow{
                        js.replace("<?xml version='1.0' encoding='UTF-8'?>", "");
                        browser.getBrowser().setContent(js);
                        noteCache.put(currentNoteGuid, js.toString());
+
+                       if (formatter.resourceError)
+                               resourceErrorMessage();
+                       readOnly = formatter.readOnly;
+                       inkNote = formatter.inkNote;
+                       if (readOnly)
+                               readOnlyCache.put(currentNoteGuid, true);
+                       if (inkNote)
+                               inkNoteCache.put(currentNoteGuid, true);
                } else {
                        logger.log(logger.HIGH, "Note content is being pulled from the cache");
                        String cachedContent = formatter.modifyCachedTodoTags(noteCache.get(currentNoteGuid));
                        js = new QByteArray(cachedContent);
                        browser.getBrowser().setContent(js);
+                       if (readOnlyCache.containsKey(currentNoteGuid))
+                                       readOnly = true;
+                       if (inkNoteCache.containsKey(currentNoteGuid))
+                                       inkNote = true;
                }
                if (conn.getNoteTable().isThumbnailNeeded(currentNoteGuid)) {
                        thumbnailHTMLReady(currentNoteGuid, js, Global.calculateThumbnailZoom(js.toString()));
                }
 
-               if (formatter.resourceError)
-                       resourceErrorMessage();
-               inkNote = formatter.readOnly;
-               
-               browser.getBrowser().page().setContentEditable(!inkNote);  // We don't allow editing of ink notes
+               if (readOnly || inkNote)
+                       browser.getBrowser().page().setContentEditable(false);  // We don't allow editing of ink notes
+               else
+                       browser.getBrowser().page().setContentEditable(true);
+               browser.setReadOnly(readOnly);
+               deleteButton.setEnabled(!readOnly);
+               tagButton.setEnabled(!readOnly);
+               menuBar.noteDelete.setEnabled(!readOnly);
+               menuBar.noteTags.setEnabled(!readOnly);
                browser.setNote(currentNote);
                
+               if (conn.getNotebookTable().isLinked(currentNote.getNotebookGuid())) {
+                       deleteButton.setEnabled(false);
+                       menuBar.notebookDeleteAction.setEnabled(false);
+               } else {
+                       deleteButton.setEnabled(true);
+                       menuBar.notebookDeleteAction.setEnabled(true);
+               }
+               
                // Build a list of non-closed notebooks
                List<Notebook> nbooks = new ArrayList<Notebook>();
                for (int i=0; i<listManager.getNotebookIndex().size(); i++) {
@@ -3576,7 +4190,6 @@ public class NeverNote extends QMainWindow{
                                nbooks.add(listManager.getNotebookIndex().get(i));
                }
                
-               browser.setNotebookList(nbooks);
                browser.setTitle(currentNote.getTitle());
                browser.setTag(getTagNamesForNote(currentNote));
                browser.setAuthor(currentNote.getAttributes().getAuthor());
@@ -3588,7 +4201,11 @@ public class NeverNote extends QMainWindow{
                else
                        browser.setSubjectDate(currentNote.getCreated());
                browser.setUrl(currentNote.getAttributes().getSourceURL());
-               browser.setAllTags(listManager.getTagIndex());
+               
+               FilterEditorTags tagFilter = new FilterEditorTags(conn, logger);
+               List<Tag> tagList = tagFilter.getValidTags(currentNote);
+               browser.setAllTags(tagList);
+               
                browser.setCurrentTags(currentNote.getTagNames());
                noteDirty = false;
                scrollToGuid(currentNoteGuid);
@@ -3596,6 +4213,10 @@ public class NeverNote extends QMainWindow{
                browser.loadingData(false);
                if (thumbnailViewer.isActiveWindow())
                        thumbnailView();
+               
+               FilterEditorNotebooks notebookFilter = new FilterEditorNotebooks(conn, logger);
+               browser.setNotebookList(notebookFilter.getValidNotebooks(currentNote, listManager.getNotebookIndex()));
+
                waitCursor(false);
                logger.log(logger.HIGH, "Leaving NeverNote.refreshEvernoteNote");
        }
@@ -3664,31 +4285,16 @@ public class NeverNote extends QMainWindow{
     @SuppressWarnings("unused")
        private void fullReindex() {
        logger.log(logger.HIGH, "Entering NeverNote.fullReindex");
-       // If we are deleting non-trash notes
-       if (currentNote == null) return;
-       if (currentNote.getDeleted() == 0) { 
-               if (QMessageBox.question(this, tr("Confirmation"), tr("This will cause all notes & attachments to be reindexed, "+
-                               "but please be aware that depending upon the size of your database updating all these records " +
-                               "can be time consuming and NeverNote will be unresponsive until it is complete.  Do you wish to continue?"),
-                               QMessageBox.StandardButton.Yes, 
-                                       QMessageBox.StandardButton.No)==StandardButton.No.value() && Global.verifyDelete() == true) {
-                                                               return;
-               }
-       }
-       waitCursor(true);
-       setMessage(tr("Marking notes for reindex."));
-       conn.getNoteTable().reindexAllNotes();
-       conn.getNoteTable().noteResourceTable.reindexAll(); 
+       indexRunner.addWork("REINDEXALL");
        setMessage(tr("Database will be reindexed."));
-       waitCursor(false);
-       logger.log(logger.HIGH, "Leaving NeverNote.fullRefresh");
+       logger.log(logger.HIGH, "Leaving NeverNote.fullReindex");
     }
     // Listener when a user wants to reindex a specific note
     @SuppressWarnings("unused")
        private void reindexNote() {
        logger.log(logger.HIGH, "Entering NeverNote.reindexNote");
                for (int i=0; i<selectedNoteGUIDs.size(); i++) {
-                       conn.getNoteTable().setIndexNeeded(selectedNoteGUIDs.get(i), true);
+                       indexRunner.addWork("REINDEXNOTE "+selectedNoteGUIDs.get(i));
                }
                if (selectedNotebookGUIDs.size() > 1)
                        setMessage(tr("Notes will be reindexed."));
@@ -3799,7 +4405,8 @@ public class NeverNote extends QMainWindow{
                                }
                        }
                        if (!match)
-                               goodNotebooks.add(listManager.getNotebookIndex().get(i).deepCopy());
+                               //goodNotebooks.add(listManager.getNotebookIndex().get(i).deepCopy());
+                               goodNotebooks.add((Notebook)Global.deepCopy(listManager.getNotebookIndex().get(i)));
                }
                // Now we have a list of good notebooks, so we can look for the default
                        found = false;
@@ -3858,7 +4465,11 @@ public class NeverNote extends QMainWindow{
        listManager.countNotebookResults(listManager.getNoteIndex());
        browserWindow.titleLabel.setFocus();
        browserWindow.titleLabel.selectAll();
-//     notebookTree.updateCounts(listManager.getNotebookIndex(), listManager.getNotebookCounter());    
+//     notebookTree.updateCounts(listManager.getNotebookIndex(), listManager.getNotebookCounter());
+       
+       // If the window is hidden, then we want to popup this in an external window & 
+       if (!isVisible())
+               listDoubleClick();
        logger.log(logger.HIGH, "Leaving NeverNote.addNote");
     }
     // Restore a note from the trash;
@@ -3886,7 +4497,8 @@ public class NeverNote extends QMainWindow{
        browserWindow.getBrowser().page().findText(find.getText(), find.getFlags());
        find.setFocus();
     }
-    private void updateNoteTitle(String guid, String title) {
+    @SuppressWarnings("unused")
+       private void updateNoteTitle(String guid, String title) {
        listManager.setNoteSynchronized(guid, false);
     }
     // Signal received that note content has changed.  Normally we just need the guid to remove
@@ -3894,36 +4506,44 @@ public class NeverNote extends QMainWindow{
     @SuppressWarnings("unused")
        private void invalidateNoteCache(String guid, String content) {
        String v = noteCache.remove(guid);
-       if (content != null) {
-               //noteCache.put(guid, content);
-       }
+//             if (guid.equals(currentNoteGuid) && !noteDirty)
+                       refreshEvernoteNote(true);
     }
     // Signal received that a note guid has changed
     @SuppressWarnings("unused")
        private void noteGuidChanged(String oldGuid, String newGuid) {
        if (noteCache.containsKey(oldGuid)) {
-               String cache = noteCache.get(oldGuid);
-               noteCache.put(newGuid, cache);
-               noteCache.remove(oldGuid);
+               if (!oldGuid.equals(currentNoteGuid)) {
+                       String cache = noteCache.get(oldGuid);
+                       noteCache.put(newGuid, cache);
+                       noteCache.remove(oldGuid);
+               } else {
+                       noteCache.remove(oldGuid);
+                       noteCache.put(newGuid, browserWindow.getContent());
+               }
        }
+  
        listManager.updateNoteGuid(oldGuid, newGuid, false);
        if (currentNoteGuid.equals(oldGuid)) {
                if (currentNote != null)
                        currentNote.setGuid(newGuid);
                currentNoteGuid = newGuid;
        }
-               if (externalWindows.containsKey(oldGuid)) {
+               
+       if (externalWindows.containsKey(oldGuid)) {
                        ExternalBrowse b = externalWindows.get(oldGuid);
                        externalWindows.remove(oldGuid);
                        b.getBrowserWindow().getNote().setGuid(newGuid);
                        externalWindows.put(newGuid, b);
                }
+
        for (int i=0; i<listManager.getNoteIndex().size(); i++) {
                if (listManager.getNoteIndex().get(i).getGuid().equals(newGuid)) {
                        noteTableView.proxyModel.addGuid(newGuid);
                        i=listManager.getNoteIndex().size();
                }
        }
+       
        if (listManager.getNoteTableModel().titleColors.containsKey(oldGuid)) {
                int color = listManager.getNoteTableModel().titleColors.get(oldGuid);
                listManager.getNoteTableModel().titleColors.put(newGuid, color);
@@ -3976,7 +4596,7 @@ public class NeverNote extends QMainWindow{
     }
     private void duplicateNote(String guid) {
                
-               Note oldNote = conn.getNoteTable().getNote(guid, true, true, false, false, false);
+               Note oldNote = conn.getNoteTable().getNote(guid, true, false,false,false,true);
                List<Resource> resList = conn.getNoteTable().noteResourceTable.getNoteResources(guid, true);
                oldNote.setContent(conn.getNoteTable().getNoteContentBinary(guid));
                oldNote.setResources(resList);
@@ -3990,11 +4610,37 @@ public class NeverNote extends QMainWindow{
                Long l = new Long(currentTime.getTimeInMillis());
                String newGuid = new String(Long.toString(l));
                                        
-               Note newNote = oldNote.deepCopy();
+//             Note newNote = oldNote.deepCopy();
+               Note newNote = (Note)Global.deepCopy(oldNote);
                newNote.setUpdateSequenceNum(0);
                newNote.setGuid(newGuid);
                newNote.setDeleted(0);
                newNote.setActive(true);
+               
+               /*
+               List<String> tagNames = new ArrayList<String>();
+               List<String> tagGuids = new ArrayList<String>();;
+               for (int i=0; i<oldNote.getTagGuidsSize(); i++) {
+                       tagNames.add(oldNote.getTagNames().get(i));
+                       tagGuids.add(oldNote.getTagGuids().get(i));
+               }
+
+               // Sort note Tags to make them look nice
+               for (int i=0; i<tagNames.size()-1; i++) {
+                       if (tagNames.get(i).compareTo(tagNames.get(i+1))<0) {
+                               String n1 = tagNames.get(i);
+                               String n2 = tagNames.get(i+1);
+                               tagNames.set(i, n2);
+                               tagNames.set(i+1, n1);
+                       }
+               }
+               newNote.setTagGuids(tagGuids);
+               newNote.setTagNames(tagNames);
+               
+               // Add tag guids to note
+               */
+               
+               // Duplicate resources
                List<Resource> resList = oldNote.getResources();
                if (resList == null)
                        resList = new ArrayList<Resource>();
@@ -4011,17 +4657,24 @@ public class NeverNote extends QMainWindow{
                        resList.get(i).setGuid(newResGuid);
                        resList.get(i).setUpdateSequenceNum(0);
                        resList.get(i).setActive(true);
-                       conn.getNoteTable().noteResourceTable.saveNoteResource(new Resource(resList.get(i).deepCopy()), true);
+                       conn.getNoteTable().noteResourceTable.saveNoteResource(
+                                       (Resource)Global.deepCopy(resList.get(i)), true);
                }
                newNote.setResources(resList);
+               
+               // Add note to the database
                listManager.addNote(newNote);
                conn.getNoteTable().addNote(newNote, true);
                listManager.getUnsynchronizedNotes().add(newNote.getGuid());
                noteTableView.insertRow(newNote, true, -1);
+               currentNoteGuid = newNote.getGuid();
+               currentNote = newNote;
+               refreshEvernoteNote(true);
                listManager.countNotebookResults(listManager.getNoteIndex());
                waitCursor(false);
        }
        // View all notes
+       @SuppressWarnings("unused")
        private void allNotes() {
                clearAttributeFilter();
                clearNotebookFilter();
@@ -4155,7 +4808,6 @@ public class NeverNote extends QMainWindow{
                }
        }
        private void thumbnailHTMLReady(String guid, QByteArray html, Integer zoom) {
-               
                logger.log(logger.HIGH, "Entering thumnailHTMLReady()");
                logger.log(logger.HIGH, "Thumbnail ready for " +guid);
                // Find an idle preview object
@@ -4192,9 +4844,11 @@ public class NeverNote extends QMainWindow{
     private void setupOnlineMenu() {
        if (!Global.isConnected) {
                menuBar.noteOnlineHistoryAction.setEnabled(false);
+               menuBar.selectiveSyncAction.setEnabled(false);
                return;
        } else {
                menuBar.noteOnlineHistoryAction.setEnabled(true);
+               menuBar.selectiveSyncAction.setEnabled(true);
        }
     }
     @SuppressWarnings("unused")
@@ -4326,7 +4980,138 @@ public class NeverNote extends QMainWindow{
        refreshEvernoteNote(true);
        setMessage(tr("Note has been restored."));
     }
-    
+    @SuppressWarnings("unused")
+       private void setupSelectiveSync() {
+       
+       // Get a list of valid notebooks
+       List<Notebook> notebooks = null; 
+       List<Tag> tags = null;
+       List<LinkedNotebook> linkedNotebooks = null;
+       try {
+                       notebooks = syncRunner.noteStore.listNotebooks(syncRunner.authToken);
+                       tags = syncRunner.noteStore.listTags(syncRunner.authToken);
+                       linkedNotebooks = syncRunner.noteStore.listLinkedNotebooks(syncRunner.authToken);
+               } catch (EDAMUserException e) {
+                       setMessage("EDAMUserException: " +e.getMessage());
+                       return;
+               } catch (EDAMSystemException e) {
+                       setMessage("EDAMSystemException: " +e.getMessage());
+                       return;
+               } catch (TException e) {
+                       setMessage("EDAMTransactionException: " +e.getMessage());
+                       return;
+               } catch (EDAMNotFoundException e) {
+                       setMessage("EDAMNotFoundException: " +e.getMessage());
+                       return;
+               }
+       
+               // Split up notebooks into synchronized & non-synchronized
+       List<Notebook> ignoredBooks = new ArrayList<Notebook>();
+       List<String> dbIgnoredNotebooks = conn.getSyncTable().getIgnoreRecords("NOTEBOOK");
+       
+       for (int i=notebooks.size()-1; i>=0; i--) {
+               for (int j=0; j<dbIgnoredNotebooks.size(); j++) {
+                       if (notebooks.get(i).getGuid().equalsIgnoreCase(dbIgnoredNotebooks.get(j))) {
+                               ignoredBooks.add(notebooks.get(i));
+                               j=dbIgnoredNotebooks.size();
+                       }
+               }
+       }
+       
+       // split up tags into synchronized & non-synchronized
+       List<Tag> ignoredTags = new ArrayList<Tag>();
+       List<String> dbIgnoredTags = conn.getSyncTable().getIgnoreRecords("TAG");
+       
+       for (int i=tags.size()-1; i>=0; i--) {
+               for (int j=0; j<dbIgnoredTags.size(); j++) {
+                       if (tags.get(i).getGuid().equalsIgnoreCase(dbIgnoredTags.get(j))) {
+                               ignoredTags.add(tags.get(i));
+                               j=dbIgnoredTags.size();
+                       }
+               }
+       }
+       
+       // split up linked notebooks into synchronized & non-synchronized
+       List<LinkedNotebook> ignoredLinkedNotebooks = new ArrayList<LinkedNotebook>();
+       List<String> dbIgnoredLinkedNotebooks = conn.getSyncTable().getIgnoreRecords("LINKEDNOTEBOOK");
+       for (int i=linkedNotebooks.size()-1; i>=0; i--) {
+               String notebookGuid = linkedNotebooks.get(i).getGuid();
+               for (int j=0; j<dbIgnoredLinkedNotebooks.size(); j++) {
+                       if (notebookGuid.equalsIgnoreCase(dbIgnoredLinkedNotebooks.get(j))) {
+                               ignoredLinkedNotebooks.add(linkedNotebooks.get(i));
+                               j=dbIgnoredLinkedNotebooks.size();
+                       }
+               }
+       }
+       
+               IgnoreSync ignore = new IgnoreSync(notebooks, ignoredBooks, tags, ignoredTags, linkedNotebooks, ignoredLinkedNotebooks);
+               ignore.exec();
+               if (!ignore.okClicked())
+                       return;
+               
+               waitCursor(true);
+               
+               // Clear out old notebooks & add  the new ones
+               List<String> oldIgnoreNotebooks = conn.getSyncTable().getIgnoreRecords("NOTEBOOK");
+               for (int i=0; i<oldIgnoreNotebooks.size(); i++) {
+                       conn.getSyncTable().deleteRecord("IGNORENOTEBOOK-"+oldIgnoreNotebooks.get(i));
+               }
+               
+               List<String> newNotebooks = new ArrayList<String>();
+               for (int i=ignore.getIgnoredBookList().count()-1; i>=0; i--) {
+                       String text = ignore.getIgnoredBookList().takeItem(i).text();
+                       for (int j=0; j<notebooks.size(); j++) {
+                               if (notebooks.get(j).getName().equalsIgnoreCase(text)) {
+                                       Notebook n = notebooks.get(j);
+                                       conn.getSyncTable().addRecord("IGNORENOTEBOOK-"+n.getGuid(), n.getGuid());
+                                       j=notebooks.size();
+                                       newNotebooks.add(n.getGuid());
+                               }
+                       }
+               }
+               
+               // Clear out old tags & add new ones
+               List<String> oldIgnoreTags = conn.getSyncTable().getIgnoreRecords("TAG");
+               for (int i=0; i<oldIgnoreTags.size(); i++) {
+                       conn.getSyncTable().deleteRecord("IGNORETAG-"+oldIgnoreTags.get(i));
+               }
+               
+               List<String> newTags = new ArrayList<String>();
+               for (int i=ignore.getIgnoredTagList().count()-1; i>=0; i--) {
+                       String text = ignore.getIgnoredTagList().takeItem(i).text();
+                       for (int j=0; j<tags.size(); j++) {
+                               if (tags.get(j).getName().equalsIgnoreCase(text)) {
+                                       Tag t = tags.get(j);
+                                       conn.getSyncTable().addRecord("IGNORETAG-"+t.getGuid(), t.getGuid());
+                                       newTags.add(t.getGuid());
+                                       j=tags.size();
+                               }
+                       }
+               }
+               
+               // Clear out old tags & add new ones
+               List<String> oldIgnoreLinkedNotebooks = conn.getSyncTable().getIgnoreRecords("LINKEDNOTEBOOK");
+               for (int i=0; i<oldIgnoreLinkedNotebooks.size(); i++) {
+                       conn.getSyncTable().deleteRecord("IGNORELINKEDNOTEBOOK-"+oldIgnoreLinkedNotebooks.get(i));
+               }
+               
+               List<String> newLinked = new ArrayList<String>();
+               for (int i=ignore.getIgnoredLinkedNotebookList().count()-1; i>=0; i--) {
+                       String text = ignore.getIgnoredLinkedNotebookList().takeItem(i).text();
+                       for (int j=0; j<linkedNotebooks.size(); j++) {
+                               if (linkedNotebooks.get(j).getShareName().equalsIgnoreCase(text)) {
+                                       LinkedNotebook t = linkedNotebooks.get(j);
+                                       conn.getSyncTable().addRecord("IGNORELINKEDNOTEBOOK-"+t.getGuid(), t.getGuid());
+                                       newLinked.add(t.getGuid());
+                                       j=linkedNotebooks.size();
+                               }
+                       }
+               }
+               
+               conn.getNoteTable().expungeIgnoreSynchronizedNotes(newNotebooks, newTags, newLinked);
+               waitCursor(false);
+               refreshLists();
+    }
     
     
        //**********************************************************
@@ -4377,6 +5162,7 @@ public class NeverNote extends QMainWindow{
                        syncRunner.syncDeletedContent = Global.synchronizeDeletedContent();
                        
                        if (syncThreadsReady > 0) {
+                               thumbnailRunner.interrupt = true;
                                saveNoteIndexWidth();
                                saveNoteColumnPositions();
                                if (syncRunner.addWork("SYNC")) {
@@ -4480,66 +5266,20 @@ public class NeverNote extends QMainWindow{
                logger.log(logger.EXTREME, "Index timer activated.  Sync running="+syncRunning);
                if (syncRunning) 
                        return;
-               // Look for any unindexed notes.  We only refresh occasionally 
-               // and do one at a time to keep overhead down.
-               if (!indexDisabled && indexRunner.getWorkQueueSize() == 0) { 
-                       List<String> notes = conn.getNoteTable().getNextUnindexed(1);
-                       String unindexedNote = null;
-                       if (notes.size() > 0)
-                               unindexedNote = notes.get(0);
-                       if (unindexedNote != null && Global.keepRunning) {
-                               indexNoteContent(unindexedNote);
-                       }
-                       if (notes.size()>0) {
-                               indexTimer.setInterval(100);
-                               return;
-                       }
-                       List<String> unindexedResources = conn.getNoteTable().noteResourceTable.getNextUnindexed(1);
-                       if (unindexedResources.size() > 0 && indexRunner.getWorkQueueSize() == 0) {
-                               String unindexedResource = unindexedResources.get(0);
-                               if (unindexedResource != null && Global.keepRunning) {
-                                       indexNoteResource(unindexedResource);
-                               }
-                       }
-                       if (unindexedResources.size() > 0) {
-                               indexTimer.setInterval(100);
-                               return;
-                       } else {
-                               indexTimer.setInterval(indexTime);
-                       }
-                       if (indexRunning) {
-                               setMessage(tr("Index completed."));
-                               logger.log(logger.LOW, "Indexing has completed.");
-                               indexRunning = false;
-                               indexTimer.setInterval(indexTime);
-                       }
+               if (!indexDisabled && indexRunner.idle) { 
+                       thumbnailRunner.interrupt = true;
+                       indexRunner.addWork("SCAN");
                }
                logger.log(logger.EXTREME, "Leaving neverNote index timer");
        }
-       private synchronized void indexNoteContent(String unindexedNote) {
-               logger.log(logger.EXTREME, "Entering NeverNote.indexNoteContent()");
-               logger.log(logger.MEDIUM, "Unindexed Note found: "+unindexedNote);
-               indexRunner.setIndexType(indexRunner.CONTENT);
-               indexRunner.addWork("CONTENT "+unindexedNote);
-               if (!indexRunning) {
-                       setMessage(tr("Indexing notes."));
-                       logger.log(logger.LOW, "Beginning to index note contents.");
-                       indexRunning = true;
-               }
-               logger.log(logger.EXTREME, "Leaving NeverNote.indexNoteContent()");
-       }
-       private synchronized void indexNoteResource(String unindexedResource) {
-               logger.log(logger.EXTREME, "Leaving NeverNote.indexNoteResource()");
-               indexRunner.addWork(new String("RESOURCE "+unindexedResource));
-               if (!indexRunning) {
-                       setMessage(tr("Indexing notes."));
-                       indexRunning = true;
-               }
-               logger.log(logger.EXTREME, "Leaving NeverNote.indexNoteResource()");
+
+       @SuppressWarnings("unused")
+       private void indexStarted() {
+               setMessage(tr("Indexing notes"));
        }
        @SuppressWarnings("unused")
-       private void indexThreadComplete(String guid) {
-               logger.log(logger.MEDIUM, "Index complete for "+guid);
+       private void indexComplete() {
+               setMessage(tr("Index complete"));
        }
        @SuppressWarnings("unused")
        private synchronized void toggleNoteIndexing() {
@@ -4562,47 +5302,64 @@ public class NeverNote extends QMainWindow{
                alive = listManager.threadCheck(Global.tagCounterThreadId);
                if (!alive) {
                        tagDeadCount++;
-                       if (tagDeadCount > MAX)
+                       if (tagDeadCount > MAX && !disableTagThreadCheck) {
                                QMessageBox.information(this, tr("A thread his died."), tr("It appears as the tag counter thread has died.  I recommend "+
                                "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                               disableTagThreadCheck = true;
+                       }
                } else
                        tagDeadCount=0;
                
                alive = listManager.threadCheck(Global.notebookCounterThreadId);
                if (!alive) {
                        notebookThreadDeadCount++;
-                       QMessageBox.information(this, tr("A thread his died."), tr("It appears as the notebook counter thread has died.  I recommend "+
-                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                       if (notebookThreadDeadCount > MAX && !disableNotebookThreadCheck) {
+                               QMessageBox.information(this, tr("A thread his died."), tr("It appears as the notebook counter thread has died.  I recommend "+
+                                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                               disableNotebookThreadCheck=true;
+                       }
                } else
                        notebookThreadDeadCount=0;
                
                alive = listManager.threadCheck(Global.trashCounterThreadId);
                if (!alive) {
                        trashDeadCount++;
-                       QMessageBox.information(this, tr("A thread his died."), ("It appears as the trash counter thread has died.  I recommend "+
-                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                       if (trashDeadCount > MAX && !disableTrashThreadCheck) {
+                               QMessageBox.information(this, tr("A thread his died."), ("It appears as the trash counter thread has died.  I recommend "+
+                                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                               disableTrashThreadCheck = true;
+                       }
                } else
                        trashDeadCount = 0;
 
                alive = listManager.threadCheck(Global.saveThreadId);
                if (!alive) {
                        saveThreadDeadCount++;
-                       QMessageBox.information(this, tr("A thread his died."), tr("It appears as the note saver thread has died.  I recommend "+
-                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                       if (saveThreadDeadCount > MAX && !disableSaveThreadCheck) {
+                               QMessageBox.information(this, tr("A thread his died."), tr("It appears as the note saver thread has died.  I recommend "+
+                                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                               disableSaveThreadCheck = true;
+                       }
                } else
                        saveThreadDeadCount=0;
 
                if (!syncThread.isAlive()) {
                        syncThreadDeadCount++;
-                       QMessageBox.information(this, tr("A thread his died."), tr("It appears as the synchronization thread has died.  I recommend "+
-                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                       if (syncThreadDeadCount > MAX && !disableSyncThreadCheck) {
+                               QMessageBox.information(this, tr("A thread his died."), tr("It appears as the synchronization thread has died.  I recommend "+
+                                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                               disableSyncThreadCheck = true;
+                       }
                } else
                        syncThreadDeadCount=0;
 
                if (!indexThread.isAlive()) {
                        indexThreadDeadCount++;
-                       QMessageBox.information(this, tr("A thread his died."), tr("It appears as the index thread has died.  I recommend "+
-                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                       if (indexThreadDeadCount > MAX && !disableIndexThreadCheck) {
+                               QMessageBox.information(this, tr("A thread his died."), tr("It appears as the index thread has died.  I recommend "+
+                                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                               disableIndexThreadCheck = true;
+                       }
                } else
                        indexThreadDeadCount=0;
 
@@ -4610,8 +5367,9 @@ public class NeverNote extends QMainWindow{
        }
 
        private void thumbnailTimer() {
-               if (Global.enableThumbnails())
+               if (Global.enableThumbnails() && !syncRunning && indexRunner.idle) {
                        thumbnailRunner.addWork("SCAN");
+               }
        }
        
        //**************************************************
@@ -4625,13 +5383,18 @@ public class NeverNote extends QMainWindow{
                fd.setWindowTitle(tr("Backup Database"));
                fd.setFilter(tr("NeverNote Export (*.nnex);;All Files (*.*)"));
                fd.setAcceptMode(AcceptMode.AcceptSave);
-               fd.setDirectory(System.getProperty("user.home"));
+               if (saveLastPath == null || saveLastPath.equals(""))
+                       fd.setDirectory(System.getProperty("user.home"));
+               else
+                       fd.setDirectory(saveLastPath);
                if (fd.exec() == 0 || fd.selectedFiles().size() == 0) {
                        return;
                }
                
                
        waitCursor(true);
+       saveLastPath = fd.selectedFiles().get(0);
+       saveLastPath = saveLastPath.substring(0,saveLastPath.lastIndexOf("/"));
        setMessage(tr("Backing up database"));
        saveNote();
 //     conn.backupDatabase(Global.getUpdateSequenceNumber(), Global.getSequenceDate());
@@ -4666,13 +5429,19 @@ public class NeverNote extends QMainWindow{
                fd.setWindowTitle(tr("Restore Database"));
                fd.setFilter(tr("NeverNote Export (*.nnex);;All Files (*.*)"));
                fd.setAcceptMode(AcceptMode.AcceptOpen);
-               fd.setDirectory(System.getProperty("user.home"));
+               if (saveLastPath == null || saveLastPath.equals(""))
+                       fd.setDirectory(System.getProperty("user.home"));
+               else
+                       fd.setDirectory(saveLastPath);
                if (fd.exec() == 0 || fd.selectedFiles().size() == 0) {
                        return;
                }
                
                
                waitCursor(true);
+       saveLastPath = fd.selectedFiles().get(0);
+       saveLastPath = saveLastPath.substring(0,saveLastPath.lastIndexOf("/"));
+
                setMessage(tr("Restoring database"));
        ImportData noteReader = new ImportData(conn, true);
        noteReader.importData(fd.selectedFiles().get(0));
@@ -4731,7 +5500,10 @@ public class NeverNote extends QMainWindow{
                fd.setWindowTitle(tr("Import Notes"));
                fd.setFilter(tr("NeverNote Export (*.nnex);;All Files (*.*)"));
                fd.setAcceptMode(AcceptMode.AcceptOpen);
-               fd.setDirectory(System.getProperty("user.home"));
+               if (saveLastPath == null || saveLastPath.equals(""))
+                       fd.setDirectory(System.getProperty("user.home"));
+               else
+                       fd.setDirectory(saveLastPath);
                if (fd.exec() == 0 || fd.selectedFiles().size() == 0) {
                        return;
                }
@@ -4746,6 +5518,7 @@ public class NeverNote extends QMainWindow{
                
        ImportData noteReader = new ImportData(conn, false);
        String fileName = fd.selectedFiles().get(0);
+//     saveLastPath.substring(0,fileName.lastIndexOf("/"));
 
        if (!fileName.endsWith(".nnex"))
                fileName = fileName +".nnex";