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Correct search field changing not selecting a default note properly after it is cleared.
[neighbornote/NeighborNote.git] / src / cx / fbn / nevernote / NeverNote.java
index 80732c5..1eba567 100644 (file)
@@ -43,6 +43,8 @@ import java.util.List;
 import java.util.SortedMap;
 import java.util.Vector;
 
+import org.apache.log4j.Level;
+import org.apache.log4j.Logger;
 import org.apache.thrift.TException;
 import org.h2.tools.ChangeFileEncryption;
 
@@ -52,9 +54,11 @@ import com.evernote.edam.error.EDAMUserException;
 import com.evernote.edam.notestore.NoteFilter;
 import com.evernote.edam.notestore.NoteVersionId;
 import com.evernote.edam.type.Data;
+import com.evernote.edam.type.LinkedNotebook;
 import com.evernote.edam.type.Note;
 import com.evernote.edam.type.NoteAttributes;
 import com.evernote.edam.type.Notebook;
+import com.evernote.edam.type.Publishing;
 import com.evernote.edam.type.QueryFormat;
 import com.evernote.edam.type.Resource;
 import com.evernote.edam.type.SavedSearch;
@@ -91,7 +95,7 @@ import com.trolltech.qt.gui.QApplication;
 import com.trolltech.qt.gui.QCloseEvent;
 import com.trolltech.qt.gui.QColor;
 import com.trolltech.qt.gui.QComboBox;
-import com.trolltech.qt.gui.QComboBox.InsertPolicy;
+import com.trolltech.qt.gui.QCursor;
 import com.trolltech.qt.gui.QDesktopServices;
 import com.trolltech.qt.gui.QDialog;
 import com.trolltech.qt.gui.QFileDialog;
@@ -101,8 +105,8 @@ import com.trolltech.qt.gui.QGridLayout;
 import com.trolltech.qt.gui.QHBoxLayout;
 import com.trolltech.qt.gui.QIcon;
 import com.trolltech.qt.gui.QImage;
+import com.trolltech.qt.gui.QKeySequence;
 import com.trolltech.qt.gui.QLabel;
-import com.trolltech.qt.gui.QListWidget;
 import com.trolltech.qt.gui.QMainWindow;
 import com.trolltech.qt.gui.QMenu;
 import com.trolltech.qt.gui.QMessageBox;
@@ -112,7 +116,7 @@ import com.trolltech.qt.gui.QPalette.ColorRole;
 import com.trolltech.qt.gui.QPixmap;
 import com.trolltech.qt.gui.QPrintDialog;
 import com.trolltech.qt.gui.QPrinter;
-import com.trolltech.qt.gui.QProgressBar;
+import com.trolltech.qt.gui.QShortcut;
 import com.trolltech.qt.gui.QSizePolicy;
 import com.trolltech.qt.gui.QSizePolicy.Policy;
 import com.trolltech.qt.gui.QSpinBox;
@@ -124,6 +128,9 @@ import com.trolltech.qt.gui.QTableWidgetItem;
 import com.trolltech.qt.gui.QTextEdit;
 import com.trolltech.qt.gui.QToolBar;
 import com.trolltech.qt.gui.QTreeWidgetItem;
+import com.trolltech.qt.network.QNetworkAccessManager;
+import com.trolltech.qt.network.QNetworkReply;
+import com.trolltech.qt.network.QNetworkRequest;
 import com.trolltech.qt.webkit.QWebPage.WebAction;
 import com.trolltech.qt.webkit.QWebSettings;
 
@@ -135,14 +142,23 @@ import cx.fbn.nevernote.dialog.DBEncryptDialog;
 import cx.fbn.nevernote.dialog.DatabaseLoginDialog;
 import cx.fbn.nevernote.dialog.DatabaseStatus;
 import cx.fbn.nevernote.dialog.FindDialog;
+import cx.fbn.nevernote.dialog.IgnoreSync;
+import cx.fbn.nevernote.dialog.LogFileDialog;
 import cx.fbn.nevernote.dialog.LoginDialog;
 import cx.fbn.nevernote.dialog.NotebookArchive;
 import cx.fbn.nevernote.dialog.NotebookEdit;
 import cx.fbn.nevernote.dialog.OnlineNoteHistory;
+import cx.fbn.nevernote.dialog.PublishNotebook;
 import cx.fbn.nevernote.dialog.SavedSearchEdit;
+import cx.fbn.nevernote.dialog.SetIcon;
+import cx.fbn.nevernote.dialog.ShareNotebook;
+import cx.fbn.nevernote.dialog.StackNotebook;
 import cx.fbn.nevernote.dialog.TagEdit;
 import cx.fbn.nevernote.dialog.ThumbnailViewer;
+import cx.fbn.nevernote.dialog.UpgradeAvailableDialog;
 import cx.fbn.nevernote.dialog.WatchFolder;
+import cx.fbn.nevernote.filters.FilterEditorNotebooks;
+import cx.fbn.nevernote.filters.FilterEditorTags;
 import cx.fbn.nevernote.gui.AttributeTreeWidget;
 import cx.fbn.nevernote.gui.BrowserWindow;
 import cx.fbn.nevernote.gui.DateAttributeFilterTable;
@@ -150,10 +166,12 @@ import cx.fbn.nevernote.gui.ExternalBrowse;
 import cx.fbn.nevernote.gui.MainMenuBar;
 import cx.fbn.nevernote.gui.NotebookTreeWidget;
 import cx.fbn.nevernote.gui.SavedSearchTreeWidget;
+import cx.fbn.nevernote.gui.SearchPanel;
 import cx.fbn.nevernote.gui.TableView;
 import cx.fbn.nevernote.gui.TagTreeWidget;
 import cx.fbn.nevernote.gui.Thumbnailer;
 import cx.fbn.nevernote.gui.TrashTreeWidget;
+import cx.fbn.nevernote.gui.controls.QuotaProgressBar;
 import cx.fbn.nevernote.sql.DatabaseConnection;
 import cx.fbn.nevernote.sql.WatchFolderRecord;
 import cx.fbn.nevernote.threads.IndexRunner;
@@ -184,6 +202,7 @@ public class NeverNote extends QMainWindow{
        QAction                                 trayExitAction;                         // Exit the application
        QAction                                 trayShowAction;                         // toggle the show/hide action          
        QAction                                 trayAddNoteAction;                      // Add a note from the system tray
+       QNetworkAccessManager   versionChecker;                         // Used when checking for new versions
        
     NotebookTreeWidget                 notebookTree;                           // List of notebooks
     AttributeTreeWidget                attributeTree;                          // List of note attributes
@@ -195,15 +214,14 @@ public class NeverNote extends QMainWindow{
     public BrowserWindow       browserWindow;                          // Window containing browser & labels
     public QToolBar            toolBar;                                        // The tool bar under the menu
     QComboBox                          searchField;                            // search filter bar on the toolbar;
+    QShortcut                          searchShortcut;                         // Shortcut to search bar
     boolean                                    searchPerformed = false;        // Search was done?
-    QProgressBar                       quotaBar;                                       // The current quota usage
+    QuotaProgressBar           quotaBar;                                       // The current quota usage
     
     ApplicationLogger          logger;
     List<String>                       selectedNotebookGUIDs;          // List of notebook GUIDs
     List<String>                       selectedTagGUIDs;                       // List of selected tag GUIDs
-    String                                     previousSelectedTag;            // Tag that was selected last time
     List<String>                       selectedNoteGUIDs;                      // List of selected notes
-    String                                     previousSelectedNotebook;       // Notebook selected last time
     String                                     selectedSavedSearchGUID;        // Currently selected saved searches
     private final HashMap<String, ExternalBrowse>      externalWindows;        // Notes being edited by an external window;
     
@@ -211,7 +229,9 @@ public class NeverNote extends QMainWindow{
     String                                     currentNoteGuid;                        // GUID of the current note 
     Note                                       currentNote;                            // The currently viewed note
     boolean                                    noteDirty;                                      // Has the note been changed?
-    boolean                            inkNote;                    // if this is an ink note, it is read only
+    boolean                            inkNote;                   // if this is an ink note, it is read only
+    boolean                                    readOnly;                                       // Is this note read-only?
+       
   
     ListManager                                listManager;                                    // DB runnable task
     
@@ -253,7 +273,7 @@ public class NeverNote extends QMainWindow{
     QAction                            synchronizeButton;                      // Synchronize with Evernote
     QAction                            allNotesButton;                         // Reset & view all notes
     QTimer                             synchronizeAnimationTimer;      // Timer to change animation button
-    double                             synchronizeIconAngle;           // Used to rotate sync icon
+    int                                        synchronizeIconAngle;           // Used to rotate sync icon
     QAction                    printButton;                            // Print Button
     QAction                            tagButton;                                      // Tag edit button
     QAction                            attributeButton;                        // Attribute information button
@@ -263,6 +283,8 @@ public class NeverNote extends QMainWindow{
     QSpinBox                   zoomSpinner;                            // Zoom zoom
     QAction                            searchClearButton;                      // Clear the search field
     
+    SearchPanel                        searchLayout;                           // Widget to hold search field, zoom, & quota
+    
     QSplitter                  mainLeftRightSplitter;          // main splitter for left/right side
     QSplitter                  leftSplitter1;                          // first left hand splitter
     QSplitter                  browserIndexSplitter;           // splitter between note index & note text
@@ -282,8 +304,16 @@ public class NeverNote extends QMainWindow{
     int                                        tagDeadCount=0;                         // number of consecutive dead times for the tag thread
     int                                        trashDeadCount=0;                       // number of consecutive dead times for the trash thread
     int                                saveThreadDeadCount=0;          // number of consecutive dead times for the save thread
+    boolean                            disableTagThreadCheck=false;
+    boolean                            disableNotebookThreadCheck=false;
+    boolean                            disableTrashThreadCheck=false;
+    boolean                            disableSaveThreadCheck=false;
+    boolean                            disableSyncThreadCheck=false;
+    boolean                            disableIndexThreadCheck=false;
     
     HashMap<String, String>            noteCache;                      // Cash of note content 
+    HashMap<String, Boolean>   readOnlyCache;          // List of cashe notes that are read-only
+    HashMap<String, Boolean>   inkNoteCache;           // List of cache notes that are ink notes 
     List<String>               historyGuids;                           // GUIDs of previously viewed items
     int                                        historyPosition;                        // Position within the viewed items
     boolean                            fromHistory;                            // Is this from the history queue?
@@ -296,6 +326,12 @@ public class NeverNote extends QMainWindow{
     Signal0                    minimizeToTray;
     boolean                            windowMaximized = false;        // Keep track of the window state for restores
     List<String>               pdfReadyQueue;                          // Queue of PDFs that are ready to be rendered.
+    List<QPixmap>              syncIcons;                                      // Array of icons used in sync animation
+    private boolean            closeAction = false;            // Used to say when to close or when to minimize
+    private static Logger log = Logger.getLogger(NeverNote.class); 
+    private String             saveLastPath;                           // last path we used
+    private final QTimer               messageTimer;                           // Timer to clear the status message.
+    private long               blockTime;                                      // When the app. is blocked, this is the time to unblock it.
     
     
     String iconPath = new String("classpath:cx/fbn/nevernote/icons/");
@@ -307,18 +343,19 @@ public class NeverNote extends QMainWindow{
     //***************************************************************
     //***************************************************************
     // Application Constructor 
+       @SuppressWarnings("static-access")
        public NeverNote(DatabaseConnection dbConn)  {
                conn = dbConn;          
                if (conn.getConnection() == null) {
-                       String msg = "Unable to connect to the database.\n\nThe most probable reason is that some other process\n" +
+                       String msg = new String(tr("Unable to connect to the database.\n\nThe most probable reason is that some other process\n" +
                                "is accessing the database or NeverNote is already running.\n\n" +
-                               "Please end any other process or shutdown the other NeverNote before starting.\n\nExiting program.";
+                               "Please end any other process or shutdown the other NeverNote before starting.\n\nExiting program."));
                        
-            QMessageBox.critical(null, "Database Connection Error",msg);
+            QMessageBox.critical(null, tr("Database Connection Error") ,msg);
                        System.exit(16);
                }
-
-               thread().setPriority(Thread.MAX_PRIORITY);
+               setObjectName("mainWindow");
+//             thread().setPriority(Thread.MAX_PRIORITY);
                
                logger = new ApplicationLogger("nevernote.log");
                logger.log(logger.HIGH, "Starting Application");
@@ -366,8 +403,11 @@ public class NeverNote extends QMainWindow{
         listManager = new ListManager(conn, logger);
         
                logger.log(logger.EXTREME, "Building index runners & timers");
-        indexRunner = new IndexRunner("indexRunner.log", Global.getDatabaseUrl(), Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword);
+        indexRunner = new IndexRunner("indexRunner.log", 
+                       Global.getDatabaseUrl(), Global.getIndexDatabaseUrl(), Global.getResourceDatabaseUrl(),
+                       Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword);
                indexThread = new QThread(indexRunner, "Index Thread");
+        indexRunner.indexAttachmentsLocally = Global.indexAttachmentsLocally();
                indexThread.start();
                
         synchronizeAnimationTimer = new QTimer();
@@ -382,7 +422,9 @@ public class NeverNote extends QMainWindow{
                                
                logger.log(logger.EXTREME, "Setting sync thread & timers");
                syncThreadsReady=1;
-               syncRunner = new SyncRunner("syncRunner.log", Global.getDatabaseUrl(), Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword);
+               syncRunner = new SyncRunner("syncRunner.log", 
+                               Global.getDatabaseUrl(), Global.getIndexDatabaseUrl(), Global.getResourceDatabaseUrl(),
+                               Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword);
                syncTime = new SyncTimes().timeValue(Global.getSyncInterval());
                syncTimer = new QTimer();
                syncTimer.timeout.connect(this, "syncTimer()");
@@ -404,7 +446,9 @@ public class NeverNote extends QMainWindow{
                
                logger.log(logger.EXTREME, "Starting thumnail thread");
                pdfReadyQueue = new ArrayList<String>();
-               thumbnailRunner = new ThumbnailRunner("thumbnailRunner.log", Global.getDatabaseUrl(), Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword);
+               thumbnailRunner = new ThumbnailRunner("thumbnailRunner.log", 
+                               Global.getDatabaseUrl(), Global.getIndexDatabaseUrl(), Global.getResourceDatabaseUrl(),
+                               Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword);
                thumbnailThread = new QThread(thumbnailRunner, "Thumbnail Thread");
                thumbnailRunner.noteSignal.thumbnailPageReady.connect(this, "thumbnailHTMLReady(String,QByteArray,Integer)");
                thumbnailThread.start();
@@ -412,7 +456,7 @@ public class NeverNote extends QMainWindow{
                thumbnailTimer = new QTimer();
                thumbnailTimer.timeout.connect(this, "thumbnailTimer()");
                thumbnailTimer();
-               thumbnailTimer.setInterval(5*1000);  // Thumbnail every 2 min
+               thumbnailTimer.setInterval(500*1000);  // Thumbnail every minute
                thumbnailTimer.start();
                
                logger.log(logger.EXTREME, "Starting authentication timer");
@@ -439,23 +483,51 @@ public class NeverNote extends QMainWindow{
                importFilesKeep = new ArrayList<String>();
                externalFileSaveTimer.start();
                
-        notebookTree = new NotebookTreeWidget();
+        notebookTree = new NotebookTreeWidget(conn);
         attributeTree = new AttributeTreeWidget();
         tagTree = new TagTreeWidget(conn);
         savedSearchTree = new SavedSearchTreeWidget();
         trashTree = new TrashTreeWidget();
         noteTableView = new TableView(logger, listManager);
         
+        
+        searchField = new QComboBox();
+        searchField.setObjectName("searchField");
+        //setStyleSheet("QComboBox#searchField { background-color: yellow }");
+        searchField.setEditable(true);
+       searchField.activatedIndex.connect(this, "searchFieldChanged()");
+       searchField.setDuplicatesEnabled(false);
+       searchField.editTextChanged.connect(this,"searchFieldTextChanged(String)");
+       searchShortcut = new QShortcut(this);
+       setupShortcut(searchShortcut, "Focus_Search");
+       searchShortcut.activated.connect(this, "focusSearch()");
+        
+       quotaBar = new QuotaProgressBar();
+       // Setup the zoom
+       zoomSpinner = new QSpinBox();
+       zoomSpinner.setMinimum(10);
+       zoomSpinner.setMaximum(1000);
+       zoomSpinner.setAccelerated(true);
+       zoomSpinner.setSingleStep(10);
+       zoomSpinner.setValue(100);
+       zoomSpinner.valueChanged.connect(this, "zoomChanged()");
+       
+       searchLayout = new SearchPanel(searchField, quotaBar, notebookTree, zoomSpinner);
+        
+        
         QGridLayout leftGrid = new QGridLayout();
+        leftSplitter1.setContentsMargins(5, 0, 0, 7);
         leftSplitter1.setLayout(leftGrid);
-        leftGrid.addWidget(notebookTree, 1, 1);
+       leftGrid.addWidget(searchLayout,1,1);
         leftGrid.addWidget(tagTree,2,1);
         leftGrid.addWidget(attributeTree,3,1);
         leftGrid.addWidget(savedSearchTree,4,1);
-        leftGrid.addWidget(trashTree, 5, 1);
+        leftGrid.addWidget(trashTree,5, 1);
         
         // Setup the browser window
         noteCache = new HashMap<String,String>();
+        readOnlyCache = new HashMap<String, Boolean>();
+        inkNoteCache = new HashMap<String, Boolean>();
         browserWindow = new BrowserWindow(conn);
 
         mainLeftRightSplitter.addWidget(leftSplitter1);
@@ -468,14 +540,6 @@ public class NeverNote extends QMainWindow{
                mainLeftRightSplitter.addWidget(noteTableView);
                mainLeftRightSplitter.addWidget(browserWindow); 
         }
-        
-        searchField = new QComboBox();
-        searchField.setEditable(true);
-       searchField.activatedIndex.connect(this, "searchFieldChanged()");
-       searchField.setDuplicatesEnabled(false);
-       searchField.editTextChanged.connect(this,"searchFieldTextChanged(String)");
-        
-       quotaBar = new QProgressBar();
        
        // Setup the thumbnail viewer
        thumbnailViewer = new ThumbnailViewer();
@@ -504,21 +568,35 @@ public class NeverNote extends QMainWindow{
                tagTree.setDeleteAction(menuBar.tagDeleteAction);
                tagTree.setEditAction(menuBar.tagEditAction);
                tagTree.setAddAction(menuBar.tagAddAction);
+               tagTree.setIconAction(menuBar.tagIconAction);
                tagTree.setVisible(Global.isWindowVisible("tagTree"));
+               leftSplitter1.setVisible(Global.isWindowVisible("leftPanel"));
                tagTree.noteSignal.tagsAdded.connect(this, "tagsAdded(String, String)");
                menuBar.hideTags.setChecked(Global.isWindowVisible("tagTree"));
                listManager.tagSignal.listChanged.connect(this, "reloadTagTree()");
+               
+               if (!Global.isWindowVisible("zoom")) {
+                       searchLayout.hideZoom();
+                       menuBar.hideZoom.setChecked(false);
+               } 
        
                notebookTree.setDeleteAction(menuBar.notebookDeleteAction);
                notebookTree.setEditAction(menuBar.notebookEditAction);
                notebookTree.setAddAction(menuBar.notebookAddAction);
+               notebookTree.setIconAction(menuBar.notebookIconAction);
+               notebookTree.setStackAction(menuBar.notebookStackAction);
+               notebookTree.setPublishAction(menuBar.notebookPublishAction);
+               notebookTree.setShareAction(menuBar.notebookShareAction);
                notebookTree.setVisible(Global.isWindowVisible("notebookTree"));
                notebookTree.noteSignal.notebookChanged.connect(this, "updateNoteNotebook(String, String)");
+               notebookTree.noteSignal.tagsChanged.connect(this, "updateNoteTags(String, List)");
+           notebookTree.noteSignal.tagsChanged.connect(this, "updateListTags(String, List)");
                menuBar.hideNotebooks.setChecked(Global.isWindowVisible("notebookTree"));
 
                savedSearchTree.setAddAction(menuBar.savedSearchAddAction);
                savedSearchTree.setEditAction(menuBar.savedSearchEditAction);
                savedSearchTree.setDeleteAction(menuBar.savedSearchDeleteAction);
+               savedSearchTree.setIconAction(menuBar.savedSearchIconAction);
                savedSearchTree.itemSelectionChanged.connect(this, "updateSavedSearchSelection()");
                savedSearchTree.setVisible(Global.isWindowVisible("savedSearchTree"));
                menuBar.hideSavedSearches.setChecked(Global.isWindowVisible("savedSearchTree"));
@@ -530,10 +608,11 @@ public class NeverNote extends QMainWindow{
                noteTableView.setNoteHistoryAction(menuBar.noteOnlineHistoryAction);
                noteTableView.noteSignal.titleColorChanged.connect(this, "titleColorChanged(Integer)");
                noteTableView.setMergeNotesAction(menuBar.noteMergeAction);
-               noteTableView.rowChanged.connect(this, "scrollToGuid(String)");
-               noteTableView.resetViewport.connect(this, "scrollToCurrentGuid()");
                noteTableView.doubleClicked.connect(this, "listDoubleClick()");
                listManager.trashSignal.countChanged.connect(trashTree, "updateCounts(Integer)");
+               
+               quotaBar.setMouseClickAction(menuBar.accountAction);
+               
                trashTree.load();
         trashTree.itemSelectionChanged.connect(this, "trashTreeSelection()");
                trashTree.setEmptyAction(menuBar.emptyTrashAction);
@@ -552,6 +631,15 @@ public class NeverNote extends QMainWindow{
                        menuBar.hideLeftSide.setChecked(true);
                if (Global.isWindowVisible("noteInformation"))
                        toggleNoteInformation();
+               quotaBar.setVisible(Global.isWindowVisible("quota"));
+               if (!quotaBar.isVisible())
+                       menuBar.hideQuota.setChecked(false);
+               searchField.setVisible(Global.isWindowVisible("searchField"));
+               if (!searchField.isVisible())
+                       menuBar.hideSearch.setChecked(false);
+               
+               if (searchField.isHidden() && quotaBar.isHidden() && zoomSpinner.isHidden() && notebookTree.isHidden())
+                       searchLayout.hide();
                
                setMenuBar(menuBar);
                setupToolBar();
@@ -563,7 +651,7 @@ public class NeverNote extends QMainWindow{
                trayExitAction = new QAction("Exit", this);
                trayAddNoteAction = new QAction("Add Note", this);
                
-               trayExitAction.triggered.connect(this, "close()");
+               trayExitAction.triggered.connect(this, "closeNeverNote()");
                trayAddNoteAction.triggered.connect(this, "addNote()");
                trayShowAction.triggered.connect(this, "trayToggleVisible()");
                
@@ -635,14 +723,18 @@ public class NeverNote extends QMainWindow{
        historyGuids.add(currentNoteGuid);
        historyPosition = 1;
        
+       menuBar.blockSignals(true);
+       menuBar.narrowListView.blockSignals(true);
+       menuBar.wideListView.blockSignals(true);
         if (Global.getListView() == Global.View_List_Narrow) { 
                menuBar.narrowListView.setChecked(true);
-//             narrowListView();
         }
         else{ 
                menuBar.wideListView.setChecked(true);
-//             wideListView();
         }
+        menuBar.blockSignals(false);
+       menuBar.narrowListView.blockSignals(false);
+       menuBar.wideListView.blockSignals(false);
 
         if (Global.getListView() == Global.View_List_Wide) {
                browserIndexSplitter.addWidget(noteTableView);
@@ -652,15 +744,21 @@ public class NeverNote extends QMainWindow{
                mainLeftRightSplitter.addWidget(browserWindow); 
         }
         
+               messageTimer = new QTimer();
+               messageTimer.timeout.connect(this, "clearMessage()");
+               messageTimer.setInterval(1000*15);
+               clearMessage();
+        
        int sortCol = Global.getSortColumn();
                int sortOrder = Global.getSortOrder();
                noteTableView.sortByColumn(sortCol, SortOrder.resolve(sortOrder));
-
+               if (Global.checkVersionUpgrade())
+                       checkForUpdates();
        }
-
-       
+               
        // Main entry point
        public static void main(String[] args) {
+               log.setLevel(Level.FATAL);
                QApplication.initialize(args);
                QPixmap pixmap = new QPixmap("classpath:cx/fbn/nevernote/icons/splash_logo.png");
                QSplashScreen splash = new QSplashScreen(pixmap);
@@ -678,7 +776,7 @@ public class NeverNote extends QMainWindow{
             dbConn = setupDatabaseConnection();
 
             // Must be last stage of setup - only safe once DB is open hence we know we are the only instance running
-            Global.getFileManager().purgeResDirectory();
+            Global.getFileManager().purgeResDirectory(true);
 
         } catch (InitializationException e) {
             // Fatal
@@ -731,7 +829,9 @@ public class NeverNote extends QMainWindow{
                         Global.getDatabaseUserPassword(), Global.cipherPassword);
             }
         }
-               DatabaseConnection dbConn = new DatabaseConnection(logger,Global.getDatabaseUrl(), Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword);
+               DatabaseConnection dbConn = new DatabaseConnection(logger,Global.getDatabaseUrl(), 
+                               Global.getIndexDatabaseUrl(), Global.getResourceDatabaseUrl(),
+                               Global.getDatabaseUserid(), Global.getDatabaseUserPassword(), Global.cipherPassword, 0);
        return dbConn;
     }
     
@@ -742,8 +842,8 @@ public class NeverNote extends QMainWindow{
         try {
                Statement st = conn.getConnection().createStatement();  
                st.execute("shutdown");
-               if (QMessageBox.question(this, "Are you sure"
-                               "Are you sure you wish to encrypt the database?",
+               if (QMessageBox.question(this, tr("Are you sure")
+                               tr("Are you sure you wish to encrypt the database?"),
                                QMessageBox.StandardButton.Yes, 
                                QMessageBox.StandardButton.No) == StandardButton.Yes.value()) {
                        ChangeFileEncryption.execute(dbPath, dbName, encryptCipher, null, Global.cipherPassword.toCharArray(), true);
@@ -836,6 +936,11 @@ public class NeverNote extends QMainWindow{
     // Exit point
        @Override
        public void closeEvent(QCloseEvent event) {     
+               if (Global.minimizeOnClose() && !closeAction && Global.showTrayIcon()) {
+                       event.ignore();
+                       hide();
+                       return;
+               }
                logger.log(logger.HIGH, "Entering NeverNote.closeEvent");
                waitCursor(true);
                
@@ -859,17 +964,17 @@ public class NeverNote extends QMainWindow{
                externalFileEditedSaver();
                if (Global.isConnected && Global.synchronizeOnClose()) {
                        setMessage(tr("Performing synchronization before closing."));
+                       syncRunner.syncNeeded = true;
                        syncRunner.addWork("SYNC");
+               } else {
+                       syncRunner.keepRunning = false;
                }
+               syncRunner.addWork("STOP");
                setMessage("Closing Program.");
                threadMonitorTimer.stop();
 
-               syncRunner.addWork("STOP");
-               syncRunner.keepRunning = false;
                thumbnailRunner.addWork("STOP");
-               syncRunner.keepRunning = false;
                indexRunner.addWork("STOP");
-               syncRunner.keepRunning = false;
                saveNote();
                listManager.stop();
                saveWindowState();
@@ -911,19 +1016,31 @@ public class NeverNote extends QMainWindow{
                Global.keepRunning = false;
                try {
                        logger.log(logger.MEDIUM, "Waiting for indexThread to stop");
-                       indexRunner.thread().join(50);
-                       logger.log(logger.MEDIUM, "Index thread has stopped");
+                       if (indexRunner.thread().isAlive())
+                               indexRunner.thread().join(50);
+                       if (!indexRunner.thread().isAlive())
+                               logger.log(logger.MEDIUM, "Index thread has stopped");
+                       else {
+                               logger.log(logger.MEDIUM, "Index thread still running - interrupting");
+                               indexRunner.thread().interrupt();
+                       }
                } catch (InterruptedException e1) {
                        e1.printStackTrace();
                }
-               if (!syncRunner.isIdle()) {
-                       try {
-                               logger.log(logger.MEDIUM, "Waiting for syncThread to stop");
-                               syncThread.join();
-                               logger.log(logger.MEDIUM, "Sync thread has stopped");
-                       } catch (InterruptedException e1) {
-                               e1.printStackTrace();
+               
+               if (!syncRunner.thread().isAlive()) {
+                       logger.log(logger.MEDIUM, "Waiting for syncThread to stop");
+                       if (syncRunner.thread().isAlive()) {
+                               System.out.println(tr("Synchronizing.  Please be patient."));
+                               for(;syncRunner.thread().isAlive();) {
+                                       try {
+                                               wait(10);
+                                       } catch (InterruptedException e) {
+                                               e.printStackTrace();
+                                       }
+                               }
                        }
+                       logger.log(logger.MEDIUM, "Sync thread has stopped");
                }
 
                if (encryptOnShutdown) {
@@ -932,28 +1049,59 @@ public class NeverNote extends QMainWindow{
                if (decryptOnShutdown) {
                        decryptOnShutdown();
                }
+               try {
+                       Global.getFileManager().purgeResDirectory(false);
+               } catch (InitializationException e) {
+                       System.out.println(tr("Empty res directory purge failed"));
+                       e.printStackTrace();
+               }
                logger.log(logger.HIGH, "Leaving NeverNote.closeEvent");
        }
 
+       @SuppressWarnings("unused")
+       private void closeNeverNote() {
+               closeAction = true;
+               close();
+       }
        public void setMessage(String s) {
                logger.log(logger.HIGH, "Entering NeverNote.setMessage");
+               
+               statusBar.show();
                logger.log(logger.HIGH, "Message: " +s);
                statusBar.showMessage(s);
                emitLog.add(s);
+               
+
+               messageTimer.stop();
+               messageTimer.setSingleShot(true);
+               messageTimer.start();
+               
+               
                logger.log(logger.HIGH, "Leaving NeverNote.setMessage");
        }
+       
+       private void clearMessage() {
+               statusBar.clearMessage();
+               statusBar.hide();
+       }
                
        private void waitCursor(boolean wait) {
-//             if (wait)
-//                     QApplication.setOverrideCursor(new QCursor(Qt.CursorShape.WaitCursor));
-//             else
-//                     QApplication.restoreOverrideCursor();
+               if (wait) {
+                       if (QApplication.overrideCursor() == null)
+                               QApplication.setOverrideCursor(new QCursor(Qt.CursorShape.WaitCursor));
+               }
+               else {
+                       while (QApplication.overrideCursor() != null)
+                               QApplication.restoreOverrideCursor();
+               }
+               listManager.refreshCounters();
        }
        
        private void setupIndexListeners() {
-               indexRunner.noteSignal.noteIndexed.connect(this, "indexThreadComplete(String)");
-               indexRunner.resourceSignal.resourceIndexed.connect(this, "indexThreadComplete(String)");
-//                     indexRunner.threadSignal.indexNeeded.connect(listManager, "setIndexNeeded(String, String, Boolean)");
+//             indexRunner.noteSignal.noteIndexed.connect(this, "indexThreadComplete(String)");
+//             indexRunner.resourceSignal.resourceIndexed.connect(this, "indexThreadComplete(String)");
+               indexRunner.signal.indexStarted.connect(this, "indexStarted()");
+               indexRunner.signal.indexFinished.connect(this, "indexComplete()");
        }
        private void setupSyncSignalListeners() {
                syncRunner.tagSignal.listChanged.connect(this, "tagIndexUpdated()");
@@ -970,6 +1118,7 @@ public class NeverNote extends QMainWindow{
                syncRunner.noteSignal.noteChanged.connect(this, "invalidateNoteCache(String, String)");
                syncRunner.resourceSignal.resourceGuidChanged.connect(this, "noteResourceGuidChanged(String,String,String)");
                syncRunner.noteSignal.noteDownloaded.connect(listManager, "noteDownloaded(Note)");
+               syncRunner.noteSignal.notebookChanged.connect(this, "updateNoteNotebook(String, String)");
                
                syncRunner.syncSignal.refreshLists.connect(this, "refreshLists()");
        }
@@ -997,6 +1146,15 @@ public class NeverNote extends QMainWindow{
            browser.resourceSignal.contentChanged.connect(this, "externalFileEdited(String)");
        }
 
+       //**************************************************
+       //* Setup shortcuts
+       //**************************************************
+       private void setupShortcut(QShortcut action, String text) {
+               if (!Global.shortcutKeys.containsAction(text))
+                       return;
+               action.setKey(new QKeySequence(Global.shortcutKeys.getShortcut(text)));
+       }
+       
        //***************************************************************
        //***************************************************************
        //* Settings and look & feel
@@ -1016,6 +1174,7 @@ public class NeverNote extends QMainWindow{
                indexTimer.start(indexTime);  // reset indexing timer
         
         settings.exec();
+        indexRunner.indexAttachmentsLocally = Global.indexAttachmentsLocally();
         if (Global.showTrayIcon())
                trayIcon.show();
         else
@@ -1034,6 +1193,8 @@ public class NeverNote extends QMainWindow{
 //        if (!dateFormat.equals(Global.getDateFormat()) ||
 //                     !timeFormat.equals(Global.getTimeFormat())) {
                noteCache.clear();
+               readOnlyCache.clear();
+               inkNoteCache.clear();
                noteIndexUpdated(true);
 //        }
         
@@ -1043,6 +1204,7 @@ public class NeverNote extends QMainWindow{
        private void restoreWindowState(boolean mainWindow) {
                // We need to name things or this doesn't work.
                setObjectName("NeverNote");
+        restoreState(Global.restoreState(objectName()));
                mainLeftRightSplitter.setObjectName("mainLeftRightSplitter");
                browserIndexSplitter.setObjectName("browserIndexSplitter");
                leftSplitter1.setObjectName("leftSplitter1");   
@@ -1061,11 +1223,21 @@ public class NeverNote extends QMainWindow{
                Global.saveState(mainLeftRightSplitter.objectName(), mainLeftRightSplitter.saveState());
                Global.saveState(browserIndexSplitter.objectName(), browserIndexSplitter.saveState());
                Global.saveState(leftSplitter1.objectName(), leftSplitter1.saveState());
+               Global.saveState(objectName(), saveState());
        }    
        // Load the style sheet
        private void loadStyleSheet() {
-               String fileName = Global.getFileManager().getQssDirPath("default.qss");
+               String styleSheetName = "default.qss";
+               if (Global.getStyle().equalsIgnoreCase("cleanlooks"))
+                               styleSheetName = "default-cleanlooks.qss";
+               String fileName = Global.getFileManager().getQssDirPathUser("default.qss");
                QFile file = new QFile(fileName);
+               
+               // If a user default.qss doesn't exist, we use the one shipped with NeverNote
+               if (!file.exists()) {
+                       fileName = Global.getFileManager().getQssDirPath(styleSheetName);
+                       file = new QFile(fileName);
+               }
                file.open(OpenModeFlag.ReadOnly);
                String styleSheet = file.readAll().toString();
                file.close();
@@ -1126,6 +1298,32 @@ public class NeverNote extends QMainWindow{
                Global.setColumnWidth("noteTableGuidPosition", width);
        }
        
+       @SuppressWarnings("unused")
+       private void toggleSearchWindow() {
+               logger.log(logger.HIGH, "Entering NeverNote.toggleSearchWindow");
+       searchLayout.toggleSearchField();
+       menuBar.hideSearch.setChecked(searchField.isVisible());
+       Global.saveWindowVisible("searchField", searchField.isVisible());
+       logger.log(logger.HIGH, "Leaving NeverNote.toggleSearchWindow");
+    }  
+       @SuppressWarnings("unused")
+       private void toggleQuotaWindow() {
+               logger.log(logger.HIGH, "Entering NeverNote.toggleQuotaWindow");
+       searchLayout.toggleQuotaBar();
+       menuBar.hideQuota.setChecked(quotaBar.isVisible());
+       Global.saveWindowVisible("quota", quotaBar.isVisible());
+       logger.log(logger.HIGH, "Leaving NeverNote.toggleQuotaWindow");
+    }  
+       @SuppressWarnings("unused")
+       private void toggleZoomWindow() {
+               logger.log(logger.HIGH, "Entering NeverNote.toggleZoomWindow");
+       searchLayout.toggleZoom();
+       menuBar.hideZoom.setChecked(zoomSpinner.isVisible());
+       Global.saveWindowVisible("zoom", zoomSpinner.isVisible());
+       logger.log(logger.HIGH, "Leaving NeverNote.toggleZoomWindow");
+    }  
+       
+       
        
     //***************************************************************
     //***************************************************************
@@ -1135,10 +1333,9 @@ public class NeverNote extends QMainWindow{
     // Setup the tree containing the user's notebooks.
     private void initializeNotebookTree() {       
        logger.log(logger.HIGH, "Entering NeverNote.initializeNotebookTree");
- //    notebookTree.itemSelectionChanged.connect(this, "notebookTreeSelection()");
-       notebookTree.itemClicked.connect(this, "notebookTreeSelection()");
+//     notebookTree.itemClicked.connect(this, "notebookTreeSelection()");
+       notebookTree.selectionSignal.connect(this, "notebookTreeSelection()");
        listManager.notebookSignal.refreshNotebookTreeCounts.connect(notebookTree, "updateCounts(List, List)");
- //    notebookTree.resize(Global.getSize("notebookTree"));
        logger.log(logger.HIGH, "Leaving NeverNote.initializeNotebookTree");
     }   
     // Listener when a notebook is selected
@@ -1155,46 +1352,48 @@ public class NeverNote extends QMainWindow{
                menuBar.noteRestoreAction.setVisible(false);            
        menuBar.notebookEditAction.setEnabled(true);
        menuBar.notebookDeleteAction.setEnabled(true);
+       menuBar.notebookPublishAction.setEnabled(true);
+       menuBar.notebookShareAction.setEnabled(true);
+       menuBar.notebookIconAction.setEnabled(true);
+       menuBar.notebookStackAction.setEnabled(true);
        List<QTreeWidgetItem> selections = notebookTree.selectedItems();
-       QTreeWidgetItem currentSelection;
        selectedNotebookGUIDs.clear();
-       if (!Global.mimicEvernoteInterface) {
-               for (int i=0; i<selections.size(); i++) {
-                       currentSelection = selections.get(i);
-                       selectedNotebookGUIDs.add(currentSelection.text(2));
-               }
-       
-               
-               // There is the potential for no notebooks to be selected if this 
-               // happens then we make it look like all notebooks were selecetd.
-               // If that happens, just select the "all notebooks"
-               selections = notebookTree.selectedItems();
-               if (selections.size()==0) {
-                       selectedNotebookGUIDs.clear();
-                       menuBar.notebookEditAction.setEnabled(false);
-                       menuBar.notebookDeleteAction.setEnabled(false);
-               }
-               if (selectedNotebookGUIDs.size() == 1 && selectedNotebookGUIDs.get(0).equals(previousSelectedNotebook)) {
-                       previousSelectedNotebook = selectedNotebookGUIDs.get(0);
-                       previousSelectedNotebook = "";
-                       notebookTree.clearSelection();
-                       notebookTreeSelection();
-                       return;
-               }
-               if (selectedNotebookGUIDs.size() == 1)
-                       previousSelectedNotebook = selectedNotebookGUIDs.get(0);
-               if (selectedNotebookGUIDs.size() > 1) 
-                       previousSelectedNotebook = "";
+               String guid = "";
+               String stackName = "";
+               if (selections.size() > 0) {
+               guid = (selections.get(0).text(2));
+               stackName = selections.get(0).text(0);
+       }
+               if (!Global.mimicEvernoteInterface) {
+                       // If no notebooks are selected, we make it look like the "all notebooks" one was selected
+                       if (selections.size()==0) {
+                               selectedNotebookGUIDs.clear();
+                               for (int i=0; i < listManager.getNotebookIndex().size(); i++) {
+                                       selectedNotebookGUIDs.add(listManager.getNotebookIndex().get(i).getGuid());
+                               }
+                               menuBar.notebookEditAction.setEnabled(false);
+                               menuBar.notebookDeleteAction.setEnabled(false);
+                               menuBar.notebookStackAction.setEnabled(false);
+                               menuBar.notebookIconAction.setEnabled(false);
+                       }
+               }
+       if (!guid.equals("") && !guid.equals("STACK")) {
+               selectedNotebookGUIDs.add(guid);
+               menuBar.notebookIconAction.setEnabled(true);
        } else {
-               String guid = "";
-               if (selections.size() > 0)
-                       guid = (selections.get(0).text(2));
-               if (!guid.equals(""))
-                       selectedNotebookGUIDs.add(guid);
+               menuBar.notebookIconAction.setEnabled(true);
+                       for (int j=0; j<listManager.getNotebookIndex().size(); j++) {
+                               Notebook book = listManager.getNotebookIndex().get(j);
+                               if (book.getStack() != null && book.getStack().equalsIgnoreCase(stackName))
+                                       selectedNotebookGUIDs.add(book.getGuid());
+                       }
        }
        listManager.setSelectedNotebooks(selectedNotebookGUIDs);
        listManager.loadNotesIndex();
        noteIndexUpdated(false);
+       refreshEvernoteNote(true);
+       listManager.refreshCounters = true;
+       listManager.refreshCounters();
                logger.log(logger.HIGH, "Leaving NeverNote.notebookTreeSelection");
 
     }
@@ -1211,7 +1410,12 @@ public class NeverNote extends QMainWindow{
        // Triggered when the notebook DB has been updated
        private void notebookIndexUpdated() {
                logger.log(logger.HIGH, "Entering NeverNote.notebookIndexUpdated");
-               if (selectedNotebookGUIDs == null)
+       
+               // Get the possible icons
+               HashMap<String, QIcon> icons = conn.getNotebookTable().getAllIcons();
+       notebookTree.setIcons(icons);
+       
+       if (selectedNotebookGUIDs == null)
                        selectedNotebookGUIDs = new ArrayList<String>();
                List<Notebook> books = conn.getNotebookTable().getAll();
                for (int i=books.size()-1; i>=0; i--) {
@@ -1232,17 +1436,17 @@ public class NeverNote extends QMainWindow{
                if (!found)
                        selectedNotebookGUIDs.remove(i);
        }
+       listManager.refreshCounters = true;
+       listManager.refreshCounters();
        notebookTree.blockSignals(false);
        
                logger.log(logger.HIGH, "Leaving NeverNote.notebookIndexUpdated");
     }
     // Show/Hide note information
+       @SuppressWarnings("unused")
        private void toggleNotebookWindow() {
                logger.log(logger.HIGH, "Entering NeverNote.toggleNotebookWindow");
-       if (notebookTree.isVisible())
-               notebookTree.hide();
-       else
-               notebookTree.show();
+               searchLayout.toggleNotebook();
        menuBar.hideNotebooks.setChecked(notebookTree.isVisible());
        Global.saveWindowVisible("notebookTree", notebookTree.isVisible());
        logger.log(logger.HIGH, "Leaving NeverNote.toggleNotebookWindow");
@@ -1282,29 +1486,90 @@ public class NeverNote extends QMainWindow{
        }
        // Edit an existing notebook
        @SuppressWarnings("unused")
+       private void stackNotebook() {
+               logger.log(logger.HIGH, "Entering NeverNote.stackNotebook");
+               StackNotebook edit = new StackNotebook();
+               
+               List<QTreeWidgetItem> selections = notebookTree.selectedItems();
+               QTreeWidgetItem currentSelection;
+               for (int i=0; i<selections.size(); i++) {
+                       currentSelection = selections.get(0);
+                       String guid = currentSelection.text(2);
+                       if (guid.equalsIgnoreCase("")) {
+                                QMessageBox.critical(this, tr("Unable To Stack") ,tr("You can't stack the \"All Notebooks\" item."));
+                                return;
+                       }
+                       if (guid.equalsIgnoreCase("STACK")) {
+                                QMessageBox.critical(this, tr("Unable To Stack") ,tr("You can't stack a stack."));
+                                return;
+                       }
+               }
+
+               edit.setStackNames(conn.getNotebookTable().getAllStackNames());
+
+               
+               edit.exec();
+       
+               if (!edit.okPressed())
+                       return;
+        
+               String stack = edit.getStackName();
+               
+               for (int i=0; i<selections.size(); i++) {
+                       currentSelection = selections.get(i);
+                       String guid = currentSelection.text(2);
+                       listManager.updateNotebookStack(guid, stack);
+               }
+               notebookIndexUpdated();
+               logger.log(logger.HIGH, "Leaving NeverNote.stackNotebook");
+       }
+       // Edit an existing notebook
+       @SuppressWarnings("unused")
        private void editNotebook() {
                logger.log(logger.HIGH, "Entering NeverNote.editNotebook");
                NotebookEdit edit = new NotebookEdit();
-               edit.setTitle(tr("Edit Notebook"));
-               edit.setLocalCheckboxEnabled(false);
+               
                List<QTreeWidgetItem> selections = notebookTree.selectedItems();
                QTreeWidgetItem currentSelection;
                currentSelection = selections.get(0);
                edit.setNotebook(currentSelection.text(0));
-               edit.setNotebooks(listManager.getNotebookIndex());
-
+               
                String guid = currentSelection.text(2);
-               for (int i=0; i<listManager.getNotebookIndex().size(); i++) {
-                       if (listManager.getNotebookIndex().get(i).getGuid().equals(guid)) {
-                               edit.setDefaultNotebook(listManager.getNotebookIndex().get(i).isDefaultNotebook());
-                               i=listManager.getNotebookIndex().size();
+               if (!guid.equalsIgnoreCase("STACK")) {
+                       edit.setTitle(tr("Edit Notebook"));
+                       edit.setNotebooks(listManager.getNotebookIndex());
+                       edit.setLocalCheckboxEnabled(false);
+                       for (int i=0; i<listManager.getNotebookIndex().size(); i++) {
+                               if (listManager.getNotebookIndex().get(i).getGuid().equals(guid)) {
+                                       edit.setDefaultNotebook(listManager.getNotebookIndex().get(i).isDefaultNotebook());
+                                       i=listManager.getNotebookIndex().size();
+                               }
                        }
+               } else {
+                       edit.setTitle(tr("Edit Stack"));
+                       edit.setStacks(conn.getNotebookTable().getAllStackNames());
+                       edit.hideLocalCheckbox();
+                       edit.hideDefaultCheckbox();
                }
+               
                edit.exec();
        
                if (!edit.okPressed())
                        return;
         
+               
+               if (guid.equalsIgnoreCase("STACK")) {
+                       conn.getNotebookTable().renameStacks(currentSelection.text(0), edit.getNotebook());
+                       for (int j=0; j<listManager.getNotebookIndex().size(); j++) {
+                               if (listManager.getNotebookIndex().get(j).getStack() != null && 
+                                       listManager.getNotebookIndex().get(j).getStack().equalsIgnoreCase(currentSelection.text(0)))
+                                               listManager.getNotebookIndex().get(j).setStack(edit.getNotebook());
+                       }
+                       conn.getNotebookTable().renameStacks(currentSelection.text(0), edit.getNotebook());
+                       currentSelection.setText(0, edit.getNotebook());
+                       return;
+               }
+               
                updateListNotebookName(currentSelection.text(0), edit.getNotebook());
                currentSelection.setText(0, edit.getNotebook());
                
@@ -1318,6 +1583,11 @@ public class NeverNote extends QMainWindow{
                                        conn.getNotebookTable().setDefaultNotebook(listManager.getNotebookIndex().get(i).getGuid());
                                }
                                conn.getNotebookTable().updateNotebook(listManager.getNotebookIndex().get(i), true);
+                               if (conn.getNotebookTable().isLinked(listManager.getNotebookIndex().get(i).getGuid())) {
+                                       LinkedNotebook linkedNotebook = conn.getLinkedNotebookTable().getByNotebookGuid(listManager.getNotebookIndex().get(i).getGuid());
+                                       linkedNotebook.setShareName(edit.getNotebook());
+                                       conn.getLinkedNotebookTable().updateNotebook(linkedNotebook, true);
+                               }
                                i=listManager.getNotebookIndex().size();
                        }
                }
@@ -1334,13 +1604,85 @@ public class NeverNote extends QMainWindow{
                                nbooks.add(listManager.getNotebookIndex().get(i));
                }
                
-               browserWindow.setNotebookList(nbooks);
+               
+               FilterEditorNotebooks notebookFilter = new FilterEditorNotebooks(conn, logger);
+               List<Notebook> filteredBooks = notebookFilter.getValidNotebooks(currentNote, listManager.getNotebookIndex());
+               browserWindow.setNotebookList(filteredBooks);
+               Iterator<String> set = externalWindows.keySet().iterator();
+               while(set.hasNext())
+                       externalWindows.get(set.next()).getBrowserWindow().setNotebookList(filteredBooks);
                logger.log(logger.HIGH, "Leaving NeverNote.editNotebook");
        }
+       // Publish a notebook
+       @SuppressWarnings("unused")
+       private void publishNotebook() {
+               List<QTreeWidgetItem> selections = notebookTree.selectedItems();
+               QTreeWidgetItem currentSelection;
+               currentSelection = selections.get(0);
+               String guid = currentSelection.text(2);
+
+               if (guid.equalsIgnoreCase("STACK") || guid.equalsIgnoreCase(""))
+                       return;
+               
+               Notebook n = null;
+               int position = 0;
+               for (int i=0; i<listManager.getNotebookIndex().size(); i++) {
+                       if (guid.equals(listManager.getNotebookIndex().get(i).getGuid())) {
+                               n = listManager.getNotebookIndex().get(i);
+                               position = i;
+                               i = listManager.getNotebookIndex().size();
+                       }
+               }
+               if (n == null)
+                       return;
+               
+               PublishNotebook publish = new PublishNotebook(Global.username, Global.getServer(), n);
+               publish.exec();
+               
+               if (!publish.okClicked()) 
+                       return;
+               
+               Publishing p = publish.getPublishing();
+               boolean isPublished = !publish.isStopPressed();
+               conn.getNotebookTable().setPublishing(n.getGuid(), isPublished, p);
+               n.setPublished(isPublished);
+               n.setPublishing(p);
+               listManager.getNotebookIndex().set(position, n);
+               notebookIndexUpdated();
+       }
+       // Publish a notebook
+       @SuppressWarnings("unused")
+       private void shareNotebook() {
+               List<QTreeWidgetItem> selections = notebookTree.selectedItems();
+               QTreeWidgetItem currentSelection;
+               currentSelection = selections.get(0);
+               String guid = currentSelection.text(2);
+
+               if (guid.equalsIgnoreCase("STACK") || guid.equalsIgnoreCase(""))
+                       return;
+               
+               Notebook n = null;;
+               for (int i=0; i<listManager.getNotebookIndex().size(); i++) {
+                       if (guid.equals(listManager.getNotebookIndex().get(i).getGuid())) {
+                               n = listManager.getNotebookIndex().get(i);
+                               i = listManager.getNotebookIndex().size();
+                       }
+               }
+                               
+               String authToken = null;
+               if (syncRunner.isConnected)
+                       authToken = syncRunner.authToken;
+               ShareNotebook share = new ShareNotebook(n.getName(), conn, n, syncRunner);
+               share.exec();
+               
+       }
+
        // Delete an existing notebook
        @SuppressWarnings("unused")
        private void deleteNotebook() {
                logger.log(logger.HIGH, "Entering NeverNote.deleteNotebook");
+               boolean stacksFound = false;
+               boolean notebooksFound = false;
                boolean assigned = false;
                // Check if any notes have this notebook
                List<QTreeWidgetItem> selections = notebookTree.selectedItems();
@@ -1348,13 +1690,18 @@ public class NeverNote extends QMainWindow{
                QTreeWidgetItem currentSelection;
                currentSelection = selections.get(i);
                String guid = currentSelection.text(2);
-               for (int j=0; j<listManager.getNoteIndex().size(); j++) {
-                       String noteGuid = listManager.getNoteIndex().get(j).getNotebookGuid();
-                       if (noteGuid.equals(guid)) {
-                               assigned = true;
-                               j=listManager.getNoteIndex().size();
-                               i=selections.size();
+               if (!guid.equalsIgnoreCase("STACK")) {
+                       notebooksFound = true;
+                       for (int j=0; j<listManager.getNoteIndex().size(); j++) {
+                               String noteGuid = listManager.getNoteIndex().get(j).getNotebookGuid();
+                               if (noteGuid.equals(guid)) {
+                                       assigned = true;
+                                       j=listManager.getNoteIndex().size();
+                                       i=selections.size();
+                               }
                        }
+               } else {
+                       stacksFound = true;
                }
         }
                if (assigned) {
@@ -1369,7 +1716,18 @@ public class NeverNote extends QMainWindow{
                }
         
         // If all notebooks are clear, verify the delete
-               if (QMessageBox.question(this, tr("Confirmation"), tr("Delete the selected notebooks?"),
+               String msg1 = new String(tr("Delete selected notebooks?"));
+               String msg2 = new String(tr("Remove selected stacks (notebooks will not be deleted)?"));
+               String msg3 = new String(tr("Delete selected notebooks & remove stacks? Notebooks under the stacks are" +
+                               " not deleted unless selected?"));
+               String msg = "";
+               if (stacksFound && notebooksFound)
+                       msg = msg3;
+               if (!stacksFound && notebooksFound)
+                       msg = msg1;
+               if (stacksFound && !notebooksFound)
+                       msg = msg2;
+               if (QMessageBox.question(this, tr("Confirmation"), msg,
                        QMessageBox.StandardButton.Yes, 
                        QMessageBox.StandardButton.No)==StandardButton.No.value()) {
                        return;
@@ -1380,16 +1738,19 @@ public class NeverNote extends QMainWindow{
                QTreeWidgetItem currentSelection;
                currentSelection = selections.get(i);
                String guid = currentSelection.text(2);
-               conn.getNotebookTable().expungeNotebook(guid, true);
-               listManager.deleteNotebook(guid);
+               if (currentSelection.text(2).equalsIgnoreCase("STACK")) {
+                               conn.getNotebookTable().renameStacks(currentSelection.text(0), "");
+                               listManager.renameStack(currentSelection.text(0), "");
+               } else {
+                       conn.getNotebookTable().expungeNotebook(guid, true);
+                       listManager.deleteNotebook(guid);
+               }
         }
-//        for (int i=<dbRunner.getLocalNotebooks().size()-1; i>=0; i--) {
- //            if (dbRunner.getLocalNotebooks().get(i).equals(arg0))
- //       }
-        notebookTreeSelection();
-        notebookTree.load(listManager.getNotebookIndex(), listManager.getLocalNotebooks());
-        listManager.countNotebookResults(listManager.getNoteIndex());
-//             notebookTree.updateCounts(listManager.getNotebookIndex(), listManager.getNotebookCounter());
+
+               notebookIndexUpdated();
+//        notebookTreeSelection();
+//        notebookTree.load(listManager.getNotebookIndex(), listManager.getLocalNotebooks());
+//        listManager.countNotebookResults(listManager.getNoteIndex());
         logger.log(logger.HIGH, "Entering NeverNote.deleteNotebook");
        }
        // A note's notebook has been updated
@@ -1464,6 +1825,7 @@ public class NeverNote extends QMainWindow{
                listManager.loadNotesIndex();
                notebookIndexUpdated();
                noteIndexUpdated(false);
+               reloadTagTree(true);
 //             noteIndexUpdated(false);
                
                // Build a list of non-closed notebooks
@@ -1477,12 +1839,100 @@ public class NeverNote extends QMainWindow{
                        if (!found)
                                nbooks.add(listManager.getNotebookIndex().get(i));
                }
+               
+               FilterEditorNotebooks notebookFilter = new FilterEditorNotebooks(conn, logger);
+               List<Notebook> filteredBooks = notebookFilter.getValidNotebooks(currentNote, listManager.getNotebookIndex());
+               browserWindow.setNotebookList(filteredBooks);
+               
+               // Update any external windows
+               Iterator<String> set = externalWindows.keySet().iterator();
+               while(set.hasNext())
+                       externalWindows.get(set.next()).getBrowserWindow().setNotebookList(filteredBooks);
+               
                waitCursor(false);
-               browserWindow.setNotebookList(nbooks);
        }
+       // Change the notebook's icon
+       @SuppressWarnings("unused")
+       private void setNotebookIcon() {
+               boolean stackSelected = false;
+               boolean allNotebookSelected = false;
+               
+               QTreeWidgetItem currentSelection;
+               List<QTreeWidgetItem> selections = notebookTree.selectedItems();
+               if (selections.size() == 0)
+                       return;
+               
+               currentSelection = selections.get(0);   
+               String guid = currentSelection.text(2);
+               if (guid.equalsIgnoreCase(""))
+                       allNotebookSelected = true;
+               if (guid.equalsIgnoreCase("STACK"))
+                       stackSelected = true;
 
+               QIcon currentIcon = currentSelection.icon(0);
+               QIcon icon;
+               SetIcon dialog;
+               
+               if (!stackSelected && !allNotebookSelected) {
+                       icon = conn.getNotebookTable().getIcon(guid);
+                       if (icon == null) {
+                               dialog = new SetIcon(currentIcon, saveLastPath);
+                               dialog.setUseDefaultIcon(true);
+                       } else {
+                               dialog = new SetIcon(icon, saveLastPath);
+                               dialog.setUseDefaultIcon(false);
+                       }
+               } else {
+                       if (stackSelected) {
+                               icon = conn.getSystemIconTable().getIcon(currentSelection.text(0), "STACK");
+                       } else {
+                               icon = conn.getSystemIconTable().getIcon(currentSelection.text(0), "ALLNOTEBOOK");                              
+                       }
+                       if (icon == null) {
+                               dialog = new SetIcon(currentIcon, saveLastPath);
+                               dialog.setUseDefaultIcon(true);
+                       } else {
+                               dialog = new SetIcon(icon, saveLastPath);
+                               dialog.setUseDefaultIcon(false);
+                       }
+               }
+               dialog.exec();
+               if (dialog.okPressed()) {
+               saveLastPath = dialog.getPath();
+
+                       QIcon newIcon = dialog.getIcon();
+                       if (stackSelected) {
+                               conn.getSystemIconTable().setIcon(currentSelection.text(0), "STACK", newIcon, dialog.getFileType());
+                               if (newIcon == null) {
+                                       newIcon = new QIcon(iconPath+"books2.png");
+                               }
+                               currentSelection.setIcon(0,newIcon);
+                               return;
+                       }
+                       if (allNotebookSelected) {
+                               conn.getSystemIconTable().setIcon(currentSelection.text(0), "ALLNOTEBOOK", newIcon, dialog.getFileType());
+                               if (newIcon == null) {
+                                       newIcon = new QIcon(iconPath+"notebook-green.png");
+                               }
+                               currentSelection.setIcon(0,newIcon);
+                               return;
+                       }
+                       conn.getNotebookTable().setIcon(guid, newIcon, dialog.getFileType());
+                       if (newIcon == null) {
+                               boolean isPublished = false;;
+                               boolean found = false;
+                               for (int i=0; i<listManager.getNotebookIndex().size() && !found; i++) {
+                                       if (listManager.getNotebookIndex().get(i).getGuid().equals(guid)) {
+                                               isPublished = listManager.getNotebookIndex().get(i).isPublished();
+                                               found = true;
+                                       }
+                               }
+                               newIcon = notebookTree.findDefaultIcon(guid, currentSelection.text(1), listManager.getLocalNotebooks(), isPublished);
+                       }
+                       currentSelection.setIcon(0, newIcon);
+               }
        
-       
+       }
        
        
     //***************************************************************
@@ -1496,6 +1946,14 @@ public class NeverNote extends QMainWindow{
                logger.log(logger.HIGH, "Inside NeverNote.addTag");
                TagEdit edit = new TagEdit();
                edit.setTagList(listManager.getTagIndex());
+
+               List<QTreeWidgetItem> selections = tagTree.selectedItems();
+               QTreeWidgetItem currentSelection = null;
+               if (selections.size() > 0) {
+                       currentSelection = selections.get(0);
+                       edit.setParentTag(currentSelection.text(0));
+               }
+
                edit.exec();
        
                if (!edit.okPressed())
@@ -1509,12 +1967,18 @@ public class NeverNote extends QMainWindow{
                newTag.setUpdateSequenceNum(0);
                newTag.setGuid(randint);
                newTag.setName(edit.getTag());
+               if (edit.getParentTag().isChecked()) {
+                       newTag.setParentGuid(currentSelection.text(2));
+                       newTag.setParentGuidIsSet(true);
+                       currentSelection.setExpanded(true);
+               }
                conn.getTagTable().addTag(newTag, true);
                listManager.getTagIndex().add(newTag);
                reloadTagTree(true);
                
                logger.log(logger.HIGH, "Leaving NeverNote.addTag");
        }
+       @SuppressWarnings("unused")
        private void reloadTagTree() {
                reloadTagTree(false);
        }
@@ -1522,7 +1986,8 @@ public class NeverNote extends QMainWindow{
                logger.log(logger.HIGH, "Entering NeverNote.reloadTagTree");
                tagIndexUpdated(reload);
                boolean filter = false;
-               listManager.countTagResults(listManager.getNoteIndex());
+               if (reload)
+                       listManager.countTagResults(listManager.getNoteIndex());
                if (notebookTree.selectedItems().size() > 0 
                                                  && !notebookTree.selectedItems().get(0).text(0).equalsIgnoreCase("All Notebooks"))
                                                  filter = true;
@@ -1610,7 +2075,8 @@ public class NeverNote extends QMainWindow{
     private void initializeTagTree() {
        logger.log(logger.HIGH, "Entering NeverNote.initializeTagTree");
 //     tagTree.itemSelectionChanged.connect(this, "tagTreeSelection()");
-       tagTree.itemClicked.connect(this, "tagTreeSelection()");
+//     tagTree.itemClicked.connect(this, "tagTreeSelection()");
+       tagTree.selectionSignal.connect(this, "tagTreeSelection()");
        listManager.tagSignal.refreshTagTreeCounts.connect(tagTree, "updateCounts(List)");
        logger.log(logger.HIGH, "Leaving NeverNote.initializeTagTree");
     }
@@ -1634,25 +2100,19 @@ public class NeverNote extends QMainWindow{
        if (selections.size() > 0) {
                menuBar.tagEditAction.setEnabled(true);
                menuBar.tagDeleteAction.setEnabled(true);
+               menuBar.tagIconAction.setEnabled(true);
        }
        else {
                menuBar.tagEditAction.setEnabled(false);
                menuBar.tagDeleteAction.setEnabled(false);
+               menuBar.tagIconAction.setEnabled(true);
        }
-       if (selectedTagGUIDs.size() == 1 && selectedTagGUIDs.get(0).equals(previousSelectedTag)) {
-               previousSelectedTag = selectedTagGUIDs.get(0);
-               previousSelectedTag = "";
-               tagTree.clearSelection();
-               tagTreeSelection();
-               return;
-       }
-       if (selectedTagGUIDs.size() == 1)
-               previousSelectedTag = selectedTagGUIDs.get(0);
-       if (selectedTagGUIDs.size() > 1) 
-               previousSelectedTag = "";
        listManager.setSelectedTags(selectedTagGUIDs);
        listManager.loadNotesIndex();
        noteIndexUpdated(false);
+       refreshEvernoteNote(true);
+       listManager.refreshCounters = true;
+       listManager.refreshCounters();
        logger.log(logger.HIGH, "Leaving NeverNote.tagTreeSelection");
     }
     // trigger the tag index to be refreshed
@@ -1664,11 +2124,15 @@ public class NeverNote extends QMainWindow{
        logger.log(logger.HIGH, "Entering NeverNote.tagIndexUpdated");
                if (selectedTagGUIDs == null)
                        selectedTagGUIDs = new ArrayList<String>();
-//             selectedTagGUIDs.clear();  // clear out old entries
+               if (reload)
+                       listManager.reloadTagIndex();
 
                tagTree.blockSignals(true);
-               if (reload)
+               if (reload) {
+                       tagTree.setIcons(conn.getTagTable().getAllIcons());
                        tagTree.load(listManager.getTagIndex());
+               }
+
        for (int i=selectedTagGUIDs.size()-1; i>=0; i--) {
                boolean found = tagTree.selectGuid(selectedTagGUIDs.get(i));
                if (!found)
@@ -1680,6 +2144,7 @@ public class NeverNote extends QMainWindow{
        logger.log(logger.HIGH, "Leaving NeverNote.tagIndexUpdated");
     }  
     // Show/Hide note information
+       @SuppressWarnings("unused")
        private void toggleTagWindow() {
                logger.log(logger.HIGH, "Entering NeverNote.toggleTagWindow");
        if (tagTree.isVisible())
@@ -1789,11 +2254,44 @@ public class NeverNote extends QMainWindow{
                menuBar.noteRestoreAction.setVisible(false);
                menuBar.tagEditAction.setEnabled(false);
                menuBar.tagDeleteAction.setEnabled(false);
+               menuBar.tagIconAction.setEnabled(false);
                selectedTagGUIDs.clear();
        listManager.setSelectedTags(selectedTagGUIDs);
        tagTree.blockSignals(false);
        }
+       // Change the icon for a tag
+       @SuppressWarnings("unused")
+       private void setTagIcon() {
+               QTreeWidgetItem currentSelection;
+               List<QTreeWidgetItem> selections = tagTree.selectedItems();
+               if (selections.size() == 0)
+                       return;
+               
+               currentSelection = selections.get(0);   
+               String guid = currentSelection.text(2);
+
+               QIcon currentIcon = currentSelection.icon(0);
+               QIcon icon = conn.getTagTable().getIcon(guid);
+               SetIcon dialog;
+               if (icon == null) {
+                       dialog = new SetIcon(currentIcon, saveLastPath);
+                       dialog.setUseDefaultIcon(true);
+               } else {
+                       dialog = new SetIcon(icon, saveLastPath);
+                       dialog.setUseDefaultIcon(false);
+               }
+               dialog.exec();
+               if (dialog.okPressed()) {
+               saveLastPath = dialog.getPath();
+                       QIcon newIcon = dialog.getIcon();
+                       conn.getTagTable().setIcon(guid, newIcon, dialog.getFileType());
+                       if (newIcon == null) 
+                               newIcon = new QIcon(iconPath+"tag.png");
+                       currentSelection.setIcon(0, newIcon);
+               }
        
+       }
+
        
     //***************************************************************
     //***************************************************************
@@ -1909,6 +2407,7 @@ public class NeverNote extends QMainWindow{
        String currentGuid = selectedSavedSearchGUID;
        menuBar.savedSearchEditAction.setEnabled(true);
        menuBar.savedSearchDeleteAction.setEnabled(true);
+       menuBar.savedSearchIconAction.setEnabled(true);
        List<QTreeWidgetItem> selections = savedSearchTree.selectedItems();
        QTreeWidgetItem currentSelection;
        selectedSavedSearchGUID = "";
@@ -1935,6 +2434,7 @@ public class NeverNote extends QMainWindow{
     private void clearSavedSearchFilter() {
        menuBar.savedSearchEditAction.setEnabled(false);
        menuBar.savedSearchDeleteAction.setEnabled(false);
+       menuBar.savedSearchIconAction.setEnabled(false);
        savedSearchTree.blockSignals(true);
        savedSearchTree.clearSelection();
        savedSearchTree.blockSignals(false);
@@ -1948,6 +2448,7 @@ public class NeverNote extends QMainWindow{
                if (selectedSavedSearchGUID == null)
                        selectedSavedSearchGUID = new String();
                savedSearchTree.blockSignals(true);
+               savedSearchTree.setIcons(conn.getSavedSearchTable().getAllIcons());
        savedSearchTree.load(listManager.getSavedSearchIndex());
        savedSearchTree.selectGuid(selectedSavedSearchGUID);
        savedSearchTree.blockSignals(false);
@@ -1959,17 +2460,20 @@ public class NeverNote extends QMainWindow{
                
        menuBar.savedSearchEditAction.setEnabled(true);
        menuBar.savedSearchDeleteAction.setEnabled(true);
+       menuBar.savedSearchIconAction.setEnabled(true);
        List<QTreeWidgetItem> selections = savedSearchTree.selectedItems();
 
        if (selections.size() > 0) {
                menuBar.savedSearchEditAction.setEnabled(true);
                menuBar.savedSearchDeleteAction.setEnabled(true);
+               menuBar.savedSearchIconAction.setEnabled(true);
                selectedSavedSearchGUID = selections.get(0).text(1);
                SavedSearch s = conn.getSavedSearchTable().getSavedSearch(selectedSavedSearchGUID);
                searchField.setEditText(s.getQuery());
        } else { 
                menuBar.savedSearchEditAction.setEnabled(false);
                menuBar.savedSearchDeleteAction.setEnabled(false);
+               menuBar.savedSearchIconAction.setEnabled(false);
                selectedSavedSearchGUID = "";
                searchField.setEditText("");
        }
@@ -1980,6 +2484,7 @@ public class NeverNote extends QMainWindow{
        
     }
     // Show/Hide note information
+       @SuppressWarnings("unused")
        private void toggleSavedSearchWindow() {
                logger.log(logger.HIGH, "Entering NeverNote.toggleSavedSearchWindow");
        if (savedSearchTree.isVisible())
@@ -1991,6 +2496,38 @@ public class NeverNote extends QMainWindow{
                Global.saveWindowVisible("savedSearchTree", savedSearchTree.isVisible());
        logger.log(logger.HIGH, "Leaving NeverNote.toggleSavedSearchWindow");
     }
+       // Change the icon for a saved search
+       @SuppressWarnings("unused")
+       private void setSavedSearchIcon() {
+               QTreeWidgetItem currentSelection;
+               List<QTreeWidgetItem> selections = savedSearchTree.selectedItems();
+               if (selections.size() == 0)
+                       return;
+               
+               currentSelection = selections.get(0);   
+               String guid = currentSelection.text(1);
+
+               QIcon currentIcon = currentSelection.icon(0);
+               QIcon icon = conn.getSavedSearchTable().getIcon(guid);
+               SetIcon dialog;
+               if (icon == null) {
+                       dialog = new SetIcon(currentIcon, saveLastPath);
+                       dialog.setUseDefaultIcon(true);
+               } else {
+                       dialog = new SetIcon(icon, saveLastPath);
+                       dialog.setUseDefaultIcon(false);
+               }
+               dialog.exec();
+               if (dialog.okPressed()) {
+               saveLastPath = dialog.getPath();
+                       QIcon newIcon = dialog.getIcon();
+                       conn.getSavedSearchTable().setIcon(guid, newIcon, dialog.getFileType());
+                       if (newIcon == null) 
+                               newIcon = new QIcon(iconPath+"search.png");
+                       currentSelection.setIcon(0, newIcon);
+               }
+       
+       }
        
        
        
@@ -2004,6 +2541,7 @@ public class NeverNote extends QMainWindow{
        @SuppressWarnings("unused")
        private void databaseStatus() {
                waitCursor(true);
+               indexRunner.interrupt = true;
                int dirty = conn.getNoteTable().getDirtyCount();
                int unindexed = conn.getNoteTable().getUnindexedCount();
                DatabaseStatus status = new DatabaseStatus();
@@ -2011,6 +2549,7 @@ public class NeverNote extends QMainWindow{
                status.setUnindexed(unindexed);
                status.setNoteCount(conn.getNoteTable().getNoteCount());
                status.setNotebookCount(listManager.getNotebookIndex().size());
+               status.setUnindexedResourceCount(conn.getNoteTable().noteResourceTable.getUnindexedCount());
                status.setSavedSearchCount(listManager.getSavedSearchIndex().size());
                status.setTagCount(listManager.getTagIndex().size());
                status.setResourceCount(conn.getNoteTable().noteResourceTable.getResourceCount());
@@ -2066,15 +2605,8 @@ public class NeverNote extends QMainWindow{
        @SuppressWarnings("unused")
        private void logger() {
                logger.log(logger.HIGH, "Entering NeverNote.logger");
-               QDialog dialog = new QDialog(this);
-               QHBoxLayout layout = new QHBoxLayout();
-               QListWidget textBox = new QListWidget();
-               layout.addWidget(textBox);
-               textBox.addItems(emitLog);
-               
-               dialog.setLayout(layout);
-               dialog.setWindowTitle(tr("Mesasge Log"));
-               dialog.show();
+               LogFileDialog dialog = new LogFileDialog(emitLog);
+               dialog.exec();
                logger.log(logger.HIGH, "Leaving NeverNote.logger");
        }
        // Menu option "help/about" was selected
@@ -2094,7 +2626,9 @@ public class NeverNote extends QMainWindow{
                                                                +"JTidy is copyrighted under the World Wide Web Consortium<br>"
                                                                +"Apache Common Utilities licensed under the Apache License Version 2.0<br>"
                                                                +"Jazzy is licened under the LGPL<br>"
-                                                               +"Java is a registered trademark of Oracle Corporation.<br><hr>"));     
+                                                               +"Java is a registered trademark of Oracle Corporation.<br><hr>"
+                                                               +"Special thanks to:<br>BitRock InstallBuilder for the Windows installer"
+                                                               +"<br>CodeCogs (www.codecogs.com) for the LaTeX image rendering."));
                logger.log(logger.HIGH, "Leaving NeverNote.about");
        }
        // Hide the entire left hand side
@@ -2102,50 +2636,144 @@ public class NeverNote extends QMainWindow{
        private void toggleLeftSide() {
                boolean hidden;
                
-               hidden = !menuBar.hideLeftSide.isChecked();
-               menuBar.hideLeftSide.setChecked(!hidden);
+               hidden = !menuBar.hideLeftSide.isChecked();
+               menuBar.hideLeftSide.setChecked(!hidden);
+               
+               if (!hidden) 
+                       leftSplitter1.setHidden(true);
+               else
+                       leftSplitter1.setHidden(false);
+               
+               Global.saveWindowVisible("leftPanel", hidden);
+               
+       }
+       public void checkForUpdates() {
+               // Send off thread to check for a new version
+               versionChecker = new QNetworkAccessManager(this);
+               versionChecker.finished.connect(this, "upgradeFileRead(QNetworkReply)");
+               QNetworkRequest request = new QNetworkRequest();
+               request.setUrl(new QUrl(Global.getUpdatesAvailableUrl()));
+               versionChecker.get(request);
+       }
+       @SuppressWarnings("unused")
+       private void upgradeFileRead(QNetworkReply reply) {
+               if (!reply.isReadable())
+                       return;
+               
+               String winVersion = Global.version;
+               String osxVersion = Global.version;
+               String linuxVersion = Global.version;
+               String linux64Version = Global.version;
+               String version = Global.version;
+               
+               // Determine the versions available
+               QByteArray data = reply.readLine();
+               while (data != null && !reply.atEnd()) {
+                       String line = data.toString();
+                       String lineVersion;
+                       if (line.contains(":")) 
+                               lineVersion = line.substring(line.indexOf(":")+1).replace(" ", "").replace("\n", "");
+                       else
+                               lineVersion = "";
+                       if (line.toLowerCase().contains("windows")) 
+                               winVersion = lineVersion;
+                       else if (line.toLowerCase().contains("os-x")) 
+                               osxVersion = lineVersion;
+                       else if (line.toLowerCase().contains("linux amd64")) 
+                               linux64Version = lineVersion;
+                       else if (line.toLowerCase().contains("linux i386")) 
+                               linuxVersion = lineVersion;
+                       else if (line.toLowerCase().contains("default")) 
+                               version = lineVersion;
+                       
+                       // Read the next line
+                       data = reply.readLine();
+               }
+               
+               // Now we need to determine what system we are on.
+               if (System.getProperty("os.name").toLowerCase().contains("windows"))
+                       version = winVersion;
+               if (System.getProperty("os.name").toLowerCase().contains("mac os"))
+                       version = osxVersion;
+               if (System.getProperty("os.name").toLowerCase().contains("Linux")) {
+                       if (System.getProperty("os.arch").contains("amd64") ||
+                               System.getProperty("os.arch").contains("x86_64"))
+                                       version = linux64Version;
+                       else
+                               version = linuxVersion;
+               }
                
-               if (notebookTree.isVisible() != hidden)
-                       toggleNotebookWindow();
-               if (savedSearchTree.isVisible() != hidden)
-                       toggleSavedSearchWindow();
-               if (tagTree.isVisible() != hidden)
-                       toggleTagWindow();
-               if (attributeTree.isVisible() != hidden)
-                       toggleAttributesWindow();
-               if (trashTree.isVisible() != hidden)
-                       toggleTrashWindow();
                
-               Global.saveWindowVisible("leftPanel", hidden);
+               for (String validVersion : Global.validVersions) {
+                       if (version.equals(validVersion))
+                               return;
+               }
                
+               UpgradeAvailableDialog dialog = new UpgradeAvailableDialog();
+               dialog.exec();
+               if (dialog.remindMe())
+                       Global.setCheckVersionUpgrade(true);
+               else
+                       Global.setCheckVersionUpgrade(false);
        }
-                       
+               
        
     //***************************************************************
     //***************************************************************
     //** These functions deal with the Toolbar
     //***************************************************************
-    //***************************************************************  
+    //*************************************************************** 
+       @SuppressWarnings("unused")
+       private void focusSearch() {
+               searchField.setFocus();
+       }
+
        // Text in the search bar has been cleared
        private void searchFieldCleared() {
+               saveNote();
+               
+               // This is done because we want to force a reload of
+               // images.  Some images we may want to highlight the text.
+               readOnlyCache.clear();
+               inkNoteCache.clear();
+               noteCache.clear();
+               QWebSettings.setMaximumPagesInCache(0);
+               QWebSettings.setObjectCacheCapacities(0, 0, 0);
+        
                searchField.setEditText("");
                saveNoteColumnPositions();
                saveNoteIndexWidth();
+               noteIndexUpdated(true);
+               if (currentNote == null && listManager.getNoteIndex().size() > 0) {
+                       currentNote = listManager.getNoteIndex().get(0);
+                       currentNoteGuid = currentNote.getGuid();
+               }
+               refreshEvernoteNote(true);
+               if (currentNote != null)
+                       loadNoteBrowserInformation(browserWindow);
        }
        // text in the search bar changed.  We only use this to tell if it was cleared, 
        // otherwise we trigger off searchFieldChanged.
        @SuppressWarnings("unused")
        private void searchFieldTextChanged(String text) {
+               QWebSettings.setMaximumPagesInCache(0);
+               QWebSettings.setObjectCacheCapacities(0, 0, 0);
+
                if (text.trim().equals("")) {
                        searchFieldCleared();
                        if (searchPerformed) {
+
+                               // This is done because we want to force a reload of
+                               // images.  Some images we may want to highlight the text.
                                noteCache.clear();
+                               readOnlyCache.clear();
+                               inkNoteCache.clear();
+                               
                                listManager.setEnSearch("");
-/////                          listManager.clearNoteIndexSearch();
-                               //noteIndexUpdated(true);
                                listManager.loadNotesIndex();
                                refreshEvernoteNote(true);
                                noteIndexUpdated(false);
+                               refreshEvernoteNote(true);
                        }
                        searchPerformed = false;
                }
@@ -2154,12 +2782,13 @@ public class NeverNote extends QMainWindow{
     private void searchFieldChanged() {
        logger.log(logger.HIGH, "Entering NeverNote.searchFieldChanged");
        noteCache.clear();
+       readOnlyCache.clear();
+       inkNoteCache.clear();
        saveNoteColumnPositions();
        saveNoteIndexWidth();
        String text = searchField.currentText();
        listManager.setEnSearch(text.trim());
        listManager.loadNotesIndex();
-//--->>>       noteIndexUpdated(true);
        noteIndexUpdated(false);
        refreshEvernoteNote(true);
        searchPerformed = true;
@@ -2170,12 +2799,16 @@ public class NeverNote extends QMainWindow{
     private void setupToolBar() {
        logger.log(logger.HIGH, "Entering NeverNote.setupToolBar");
        toolBar = addToolBar(tr("Tool Bar"));   
+       toolBar.setObjectName("toolBar");
        menuBar.setupToolBarVisible();
        if (!Global.isWindowVisible("toolBar"))
                toolBar.setVisible(false);
        else
                toolBar.setVisible(true);
 
+//     toolBar.addWidget(menuBar);
+//     menuBar.setSizePolicy(Policy.Minimum, Policy.Minimum);
+//     toolBar.addSeparator();
        prevButton = toolBar.addAction("Previous");
        QIcon prevIcon = new QIcon(iconPath+"back.png");
        prevButton.setIcon(prevIcon);
@@ -2249,38 +2882,32 @@ public class NeverNote extends QMainWindow{
        allNotesButton.setIcon(allIcon);
        toggleAllNotesButton(Global.isToolbarButtonVisible("allNotes"));
        
-       toolBar.addSeparator();
-       toolBar.addWidget(new QLabel(tr("Quota:")));
-       toolBar.addWidget(quotaBar);
+       //toolBar.addSeparator();
+       //toolBar.addWidget(new QLabel(tr("Quota:")));
+       //toolBar.addWidget(quotaBar);
        //quotaBar.setSizePolicy(Policy.Minimum, Policy.Minimum);
        updateQuotaBar();
-       toolBar.addSeparator();
+       //toolBar.addSeparator();
        
-       // Setup the zoom
-       zoomSpinner = new QSpinBox();
-       zoomSpinner.setMinimum(10);
-       zoomSpinner.setMaximum(1000);
-       zoomSpinner.setAccelerated(true);
-       zoomSpinner.setSingleStep(10);
-       zoomSpinner.setValue(100);
-       zoomSpinner.valueChanged.connect(this, "zoomChanged()");
-       toolBar.addWidget(new QLabel(tr("Zoom")));
-       toolBar.addWidget(zoomSpinner);
+       //toolBar.addWidget(new QLabel(tr("Zoom")));
+       //toolBar.addWidget(zoomSpinner);
        
        //toolBar.addWidget(new QLabel("                    "));
-       toolBar.addSeparator();
-       toolBar.addWidget(new QLabel(tr("  Search:")));
-       toolBar.addWidget(searchField);
+       //toolBar.addSeparator();
+       //toolBar.addWidget(new QLabel(tr("  Search:")));
+       //toolBar.addWidget(searchField);
        QSizePolicy sizePolicy = new QSizePolicy();
        sizePolicy.setHorizontalPolicy(Policy.MinimumExpanding);
-       searchField.setSizePolicy(sizePolicy);
-       searchField.setInsertPolicy(InsertPolicy.InsertAtTop);
+       QLabel spacer = new QLabel("");
+       spacer.setSizePolicy(sizePolicy);
+       toolBar.addWidget(spacer);
+       //searchField.setInsertPolicy(InsertPolicy.InsertAtTop);
 
-       searchClearButton = toolBar.addAction("Search Clear");
-       QIcon searchClearIcon = new QIcon(iconPath+"searchclear.png");
-       searchClearButton.setIcon(searchClearIcon);
-       searchClearButton.triggered.connect(this, "searchFieldCleared()");
-       toggleSearchClearButton(Global.isToolbarButtonVisible("searchClear"));
+       //searchClearButton = toolBar.addAction("Search Clear");
+       //QIcon searchClearIcon = new QIcon(iconPath+"searchclear.png");
+       //searchClearButton.setIcon(searchClearIcon);
+       //searchClearButton.triggered.connect(this, "searchFieldCleared()");
+       //toggleSearchClearButton(Global.isToolbarButtonVisible("searchClear"));
 
        logger.log(logger.HIGH, "Leaving NeverNote.setupToolBar");
     }
@@ -2400,7 +3027,8 @@ public class NeverNote extends QMainWindow{
                allNotesButton.setVisible(toggle);
                Global.saveToolbarButtonsVisible("allNotes", toggle);
     }
-    private void toggleSearchClearButton(Boolean toggle) {
+    @SuppressWarnings("unused")
+       private void toggleSearchClearButton(Boolean toggle) {
                searchClearButton.setVisible(toggle);
                Global.saveToolbarButtonsVisible("searchClear", toggle);
     }
@@ -2411,41 +3039,33 @@ public class NeverNote extends QMainWindow{
 
     @SuppressWarnings("unused")
        private void updateSyncButton() {
- /*    synchronizeFrame++;
-       if (synchronizeFrame == 4) 
-               synchronizeFrame = 0;
-       synchronizeButton.setIcon(synchronizeAnimation.get(synchronizeFrame));
-       */
-/*     
-       QPixmap pix = new QPixmap(iconPath+"synchronize.png");
-       QMatrix matrix = new QMatrix();
-       synchronizeIconAngle = synchronizeIconAngle + 1.0;
-       if (synchronizeIconAngle >= 365.0)
-               synchronizeIconAngle = 0.0;
-       matrix.translate(pix.size().width()/2, pix.size().height()/2);
-               matrix.rotate( synchronizeIconAngle );
-       matrix.translate(-pix.size().width()/2, -pix.size().height()/2);
-               pix = pix.transformed(matrix, TransformationMode.SmoothTransformation);
-       synchronizeButton.setIcon(pix);
-*/
-               
-       
-       QPixmap pix = new QPixmap(iconPath+"synchronize.png");
-       QPixmap rotatedPix = new QPixmap(pix.size());
-       QPainter p = new QPainter(rotatedPix);
-
-       rotatedPix.fill(toolBar.palette().color(ColorRole.Button));
-       QSize size = pix.size();
-       p.translate(size.width()/2, size.height()/2);
-       synchronizeIconAngle = synchronizeIconAngle+1.0;
-       if (synchronizeIconAngle >= 359.0)
-               synchronizeIconAngle = 0.0;
-       p.rotate(synchronizeIconAngle);
-       p.setBackgroundMode(BGMode.OpaqueMode);
-       p.translate(-size.width()/2, -size.height()/2);
-       p.drawPixmap(0,0, pix);
-       p.end();
-       synchronizeButton.setIcon(rotatedPix);
+               
+       if (syncIcons == null) {
+               syncIcons = new ArrayList<QPixmap>();
+               double angle = 0.0;
+               synchronizeIconAngle = 0;
+               QPixmap pix = new QPixmap(iconPath+"synchronize.png");
+               syncIcons.add(pix);
+               for (int i=0; i<=360; i++) {
+                       QPixmap rotatedPix = new QPixmap(pix.size());
+                       QPainter p = new QPainter(rotatedPix);
+               rotatedPix.fill(toolBar.palette().color(ColorRole.Button));
+               QSize size = pix.size();
+               p.translate(size.width()/2, size.height()/2);
+               angle = angle+1.0;
+               p.rotate(angle);
+               p.setBackgroundMode(BGMode.OpaqueMode);
+               p.translate(-size.width()/2, -size.height()/2);
+               p.drawPixmap(0,0, pix);
+               p.end();
+               syncIcons.add(rotatedPix);
+               }
+       }
+
+       synchronizeIconAngle++;
+       if (synchronizeIconAngle > 359)
+               synchronizeIconAngle=0;
+       synchronizeButton.setIcon(syncIcons.get(synchronizeIconAngle));
        
     }
     // Synchronize with Evernote
@@ -2455,7 +3075,7 @@ public class NeverNote extends QMainWindow{
        if (!Global.isConnected)
                remoteConnect();
        if (Global.isConnected)
-               synchronizeAnimationTimer.start(10);
+               synchronizeAnimationTimer.start(5);
 //                     synchronizeAnimationTimer.start(200);
        syncTimer();
        logger.log(logger.HIGH, "Leaving NeverNote.evernoteSync");
@@ -2576,11 +3196,11 @@ public class NeverNote extends QMainWindow{
                menuBar.noteRestoreAction.setVisible(false);
                
                listManager.loadNotesIndex();
-//--->>>               noteIndexUpdated(true);
                noteIndexUpdated(false);
        }       
    }
     // Show/Hide trash window
+       @SuppressWarnings("unused")
        private void toggleTrashWindow() {
                logger.log(logger.HIGH, "Entering NeverNote.toggleTrashWindow");
        if (trashTree.isVisible())
@@ -2615,6 +3235,7 @@ public class NeverNote extends QMainWindow{
                menuBar.connectAction.setText(tr("Connect"));
                menuBar.connectAction.setToolTip(tr("Connect to Evernote"));
                menuBar.synchronizeAction.setEnabled(false);
+               Global.isConnected = false;
                synchronizeAnimationTimer.stop();
                return;
        }
@@ -2636,56 +3257,67 @@ public class NeverNote extends QMainWindow{
                } catch (FileNotFoundException e) {
                        // File not found, so we'll just get empty strings anyway. 
                }
+
+               if (Global.getProxyValue("url").equals("")) {
+                       System.setProperty("http.proxyHost","") ;
+                       System.setProperty("http.proxyPort", "") ;
+                       System.setProperty("https.proxyHost","") ;
+                       System.setProperty("https.proxyPort", "") ;         
+               } else {
+                       // PROXY
+                       System.setProperty("http.proxyHost",Global.getProxyValue("url")) ;
+                       System.setProperty("http.proxyPort", Global.getProxyValue("port")) ;
+                       System.setProperty("https.proxyHost",Global.getProxyValue("url")) ;
+                       System.setProperty("https.proxyPort", Global.getProxyValue("port")) ;
+                       if (Global.getProxyValue("userid").equals("")) {
+                               Authenticator.setDefault(new Authenticator() {
+                       @Override
+                       protected PasswordAuthentication getPasswordAuthentication() {
+                               return new
+                               PasswordAuthentication(Global.getProxyValue("userid"),Global.getProxyValue("password").toCharArray());
+                               }
+                       });
+               }
+       }
+
+               syncRunner.userStoreUrl = Global.userStoreUrl;
+               syncRunner.noteStoreUrl = Global.noteStoreUrl;
+               syncRunner.noteStoreUrlBase = Global.noteStoreUrlBase;
+
                String userid = aes.getUserid();
                String password = aes.getPassword();
                if (!userid.equals("") && !password.equals("")) {
                Global.username = userid;
                Global.password = password;
+                       syncRunner.username = Global.username;
+                       syncRunner.password = Global.password;
+               syncRunner.enConnect();
                }               
 
-        // Show the login dialog box
-               if (!Global.automaticLogin() || userid.equals("")|| password.equals("")) {
-                       LoginDialog login = new LoginDialog();
-                       login.exec();
+               Global.isConnected = syncRunner.isConnected;
                
-                       if (!login.okPressed()) {
-                               return;
-                       }
+               if (!Global.isConnected) {
+                       // Show the login dialog box
+                       if (!Global.automaticLogin() || userid.equals("")|| password.equals("")) {
+                               LoginDialog login = new LoginDialog();
+                               login.exec();
+               
+                               if (!login.okPressed()) {
+                                       return;
+                               }
         
-                       Global.username = login.getUserid();
-                       Global.password = login.getPassword();
+                               Global.username = login.getUserid();
+                               Global.password = login.getPassword();
+                       }
+                       syncRunner.username = Global.username;
+                       syncRunner.password = Global.password;
+                       syncRunner.enConnect();
+                       Global.isConnected = syncRunner.isConnected;
                }
-               syncRunner.username = Global.username;
-               syncRunner.password = Global.password;
-               syncRunner.userStoreUrl = Global.userStoreUrl;
-               syncRunner.noteStoreUrl = Global.noteStoreUrl;
-               syncRunner.noteStoreUrlBase = Global.noteStoreUrlBase;
                
-           if (Global.getProxyValue("url").equals("")) {
-               System.setProperty("http.proxyHost","") ;
-               System.setProperty("http.proxyPort", "") ;
-               System.setProperty("https.proxyHost","") ;
-               System.setProperty("https.proxyPort", "") ;         
-           } else {
-                       // PROXY
-               System.setProperty("http.proxyHost",Global.getProxyValue("url")) ;
-               System.setProperty("http.proxyPort", Global.getProxyValue("port")) ;
-               System.setProperty("https.proxyHost",Global.getProxyValue("url")) ;
-               System.setProperty("https.proxyPort", Global.getProxyValue("port")) ;
-        
-               if (Global.getProxyValue("userid").equals("")) {
-                       Authenticator.setDefault(new Authenticator() {
-                               @Override
-                               protected PasswordAuthentication getPasswordAuthentication() {
-                                       return new
-                                       PasswordAuthentication(Global.getProxyValue("userid"),Global.getProxyValue("password").toCharArray());
-                                       }});
-                       }
-               }
-               
-               
-               syncRunner.enConnect();
-               Global.isConnected = syncRunner.isConnected;
+               if (!Global.isConnected)
+                       return;
                setupOnlineMenu();
                setupConnectMenuOptions();
                logger.log(logger.HIGH, "Leaving NeverNote.remoteConnect");
@@ -2714,10 +3346,10 @@ public class NeverNote extends QMainWindow{
     @SuppressWarnings("unused")
        private void attributeTreeClicked(QTreeWidgetItem item, Integer integer) {
        
-       clearTagFilter();
-       clearNotebookFilter();
+//     clearTagFilter();
+//     clearNotebookFilter();
        clearTrashFilter();
-       clearSavedSearchFilter();
+//     clearSavedSearchFilter();
 
        if (attributeTreeSelected == null || item.nativeId() != attributeTreeSelected.nativeId()) {
                if (item.childCount() > 0) {
@@ -2772,6 +3404,7 @@ public class NeverNote extends QMainWindow{
     }
 
     // Show/Hide attribute search window
+       @SuppressWarnings("unused")
        private void toggleAttributesWindow() {
                logger.log(logger.HIGH, "Entering NeverNote.toggleAttributesWindow");
        if (attributeTree.isVisible())
@@ -2895,7 +3528,24 @@ public class NeverNote extends QMainWindow{
        refreshEvernoteNoteList();
        logger.log(logger.HIGH, "Calling note table reload in NeverNote.noteIndexUpdated() - "+reload);
        noteTableView.load(reload);
-       scrollToGuid(currentNoteGuid);
+       if (currentNoteGuid == null || currentNoteGuid.equals("")) {
+               int pos;
+               if (noteTableView.proxyModel.sortOrder() == SortOrder.AscendingOrder)
+                       pos = noteTableView.proxyModel.rowCount();
+               else 
+                       pos = 1;
+               if (noteTableView.proxyModel.rowCount() == 0)
+                       pos = 0;
+               if (pos>0)      {
+                       QModelIndex i = noteTableView.proxyModel.index(pos-1, Global.noteTableGuidPosition);
+                       if (i!=null) {
+                               currentNoteGuid = (String)i.data();
+                       }
+               }
+       }               
+               if (!noteTableView.isColumnHidden(Global.noteTableGuidPosition))
+                       showColumns();
+               scrollToGuid(currentNoteGuid);
                logger.log(logger.HIGH, "Leaving NeverNote.noteIndexUpdated");
     }
        // Called when the list of notes is updated
@@ -2917,10 +3567,11 @@ public class NeverNote extends QMainWindow{
                if (currentNoteGuid == null) 
                        currentNoteGuid = new String();
                
+               //determine current note guid
                for (Note note : listManager.getNoteIndex()) {
                        tempNoteGuid = note.getGuid();
                        if (currentNoteGuid.equals(tempNoteGuid)) {
-                               saveCurrentNoteGuid = new String(tempNoteGuid);
+                               saveCurrentNoteGuid = tempNoteGuid;
                        }
                }
                
@@ -2931,12 +3582,10 @@ public class NeverNote extends QMainWindow{
                        browserWindow.setDisabled(true);
                } 
                
-               if (saveCurrentNoteGuid.equals("") && listManager.getNoteIndex().size() >0) {
-                       currentNoteGuid = listManager.getNoteIndex().get(listManager.getNoteIndex().size()-1).getGuid();
-                       currentNote = listManager.getNoteIndex().get(listManager.getNoteIndex().size()-1);
-                       refreshEvernoteNote(true);
-               } else {
+               if (!saveCurrentNoteGuid.equals("")) {
                        refreshEvernoteNote(false);
+               } else {
+                       currentNoteGuid = "";
                }
                reloadTagTree(false);
 
@@ -3079,6 +3728,7 @@ public class NeverNote extends QMainWindow{
        }
        logger.log(logger.HIGH, "Leaving NeverNote.updateListAuthor");
     }
+       @SuppressWarnings("unused")
        private void updateListGuid(String oldGuid, String newGuid) {
        logger.log(logger.HIGH, "Entering NeverNote.updateListTitle");
 
@@ -3196,7 +3846,6 @@ public class NeverNote extends QMainWindow{
        }
        logger.log(logger.HIGH, "Leaving NeverNote.updateListDateCreated");
     }
-    @SuppressWarnings("unused")
        private void updateListDateChanged(String guid, QDateTime date) {
        logger.log(logger.HIGH, "Entering NeverNote.updateListDateChanged");
 
@@ -3221,7 +3870,6 @@ public class NeverNote extends QMainWindow{
        logger.log(logger.HIGH, "Leaving NeverNote.updateListDateChanged");
     }  
     // Redo scroll
-    @SuppressWarnings("unused")
        private void scrollToCurrentGuid() {
        //scrollToGuid(currentNoteGuid);
        List<QModelIndex> selections = noteTableView.selectionModel().selectedRows();
@@ -3232,6 +3880,7 @@ public class NeverNote extends QMainWindow{
        String guid = (String)index.model().index(row, Global.noteTableGuidPosition).data();
        scrollToGuid(guid);
     }
+       // Scroll to the current GUID in tthe list.
     // Scroll to a particular index item
     private void scrollToGuid(String guid) {
        if (currentNote == null || guid == null) 
@@ -3245,7 +3894,6 @@ public class NeverNote extends QMainWindow{
                        }
                }
        }
-       
        if (!currentNote.isActive() && !Global.showDeleted) {
                for (int i=0; i<listManager.getNoteIndex().size(); i++) {
                        if (listManager.getNoteIndex().get(i).isActive()) {
@@ -3255,13 +3903,13 @@ public class NeverNote extends QMainWindow{
                        }
                }
        }
-       
        QModelIndex index; 
        for (int i=0; i<noteTableView.model().rowCount(); i++) {
                index = noteTableView.model().index(i, Global.noteTableGuidPosition);
                if (currentNoteGuid.equals(index.data())) {
-//                     noteTableView.setCurrentIndex(index);
+//                     noteTableView.selectionModel().blockSignals(true);
                                noteTableView.selectRow(i);
+//                             noteTableView.selectionModel().blockSignals(false);
                        noteTableView.scrollTo(index, ScrollHint.EnsureVisible);  // This should work, but it doesn't
                                i=listManager.getNoteTableModel().rowCount();
                }
@@ -3321,7 +3969,12 @@ public class NeverNote extends QMainWindow{
        saveNoteColumnPositions();
        saveNoteIndexWidth();
        saveWindowState();
-       Global.setListView(Global.View_List_Narrow);
+               int sortCol = noteTableView.proxyModel.sortColumn();
+               int sortOrder = noteTableView.proxyModel.sortOrder().value();
+               Global.setSortColumn(sortCol);
+               Global.setSortOrder(sortOrder);
+
+               Global.setListView(Global.View_List_Narrow);
        
        menuBar.wideListView.blockSignals(true);
        menuBar.narrowListView.blockSignals(true);
@@ -3338,12 +3991,23 @@ public class NeverNote extends QMainWindow{
        noteTableView.repositionColumns();
        noteTableView.resizeColumnWidths();
        noteTableView.resizeRowHeights();
+       
+       sortCol = Global.getSortColumn();
+               sortOrder = Global.getSortOrder();
+               noteTableView.sortByColumn(sortCol, SortOrder.resolve(sortOrder));
+               
        showColumns();
        noteTableView.load(false);
+       refreshEvernoteNote(true);
        scrollToCurrentGuid();
     }
     public void wideListView() {
-       saveWindowState();
+               int sortCol = noteTableView.proxyModel.sortColumn();
+               int sortOrder = noteTableView.proxyModel.sortOrder().value();
+               Global.setSortColumn(sortCol);
+               Global.setSortOrder(sortOrder);
+
+               saveWindowState();
        saveNoteColumnPositions();
        saveNoteIndexWidth();
        Global.setListView(Global.View_List_Wide);
@@ -3363,6 +4027,11 @@ public class NeverNote extends QMainWindow{
        noteTableView.repositionColumns();
        noteTableView.resizeColumnWidths();
        noteTableView.resizeRowHeights();
+       
+       sortCol = Global.getSortColumn();
+               sortOrder = Global.getSortOrder();
+               noteTableView.sortByColumn(sortCol, SortOrder.resolve(sortOrder));
+       
        showColumns();
        noteTableView.load(false);
        scrollToCurrentGuid();
@@ -3374,14 +4043,12 @@ public class NeverNote extends QMainWindow{
     //** External editor window functions                    
     //***************************************************************
     //***************************************************************
-    @SuppressWarnings("unused")
        private void listDoubleClick() {
        saveNote();
        if (externalWindows.containsKey(currentNoteGuid)) {
                externalWindows.get(currentNoteGuid).raise();
                return;
        }
-       
        // We have a new external editor to create
        QIcon appIcon = new QIcon(iconPath+"nevernote.png");
        ExternalBrowse newBrowser = new ExternalBrowse(conn);
@@ -3398,6 +4065,8 @@ public class NeverNote extends QMainWindow{
        browserWindow.noteSignal.tagsChanged.connect(newBrowser, "updateTags(String, List)");
        browserWindow.noteSignal.titleChanged.connect(newBrowser, "updateTitle(String, String)");
        browserWindow.noteSignal.notebookChanged.connect(newBrowser, "updateNotebook(String, String)");
+       browserWindow.blockApplication.connect(this, "blockApplication(Long)");
+       browserWindow.unblockApplication.connect(this, "unblockApplication()");
        
        newBrowser.show();
     }
@@ -3407,7 +4076,7 @@ public class NeverNote extends QMainWindow{
                browserWindow.setTitle(text);
        }
     }
-    @SuppressWarnings("unused")
+    @SuppressWarnings({ "rawtypes", "unused" })
        private void externalWindowTagsEdited(String guid, List values) {
        StringBuffer line = new StringBuffer(100);
        for (int i=0; i<values.size(); i++) {
@@ -3434,6 +4103,7 @@ public class NeverNote extends QMainWindow{
     @SuppressWarnings("unused")
        private void setNoteDirty() {
                logger.log(logger.EXTREME, "Entering NeverNote.setNoteDirty()");
+               
                // Find if the note is being edited externally.  If it is, update it.
                if (externalWindows.containsKey(currentNoteGuid)) {
                        QTextCodec codec = QTextCodec.codecForName("UTF-8");
@@ -3481,6 +4151,7 @@ public class NeverNote extends QMainWindow{
                browserWindow.getBrowser().setContent(unicode);
        } 
        if (save) {
+               thumbnailRunner.addWork("GENERATE "+ guid);
                saveNote(guid, browser);
        }
        
@@ -3488,6 +4159,7 @@ public class NeverNote extends QMainWindow{
     private void saveNote() {
        if (noteDirty) {
                saveNote(currentNoteGuid, browserWindow);
+               thumbnailRunner.addWork("GENERATE "+ currentNoteGuid);
                noteDirty = false;
        }
     }
@@ -3521,18 +4193,21 @@ public class NeverNote extends QMainWindow{
     // Get a note from Evernote (and put it in the browser)
        private void refreshEvernoteNote(boolean reload) {
                logger.log(logger.HIGH, "Entering NeverNote.refreshEvernoteNote");
+               
                if (Global.disableViewing) {
                        browserWindow.setEnabled(false);
                        return;
                }
                inkNote = false;
-               if (!Global.showDeleted)
-                       browserWindow.setReadOnly(false);
+               readOnly = false;
+               if (Global.showDeleted || currentNoteGuid == null || currentNoteGuid.equals(""))
+                       readOnly = true;
                Global.cryptCounter =0;
-               if (currentNoteGuid.equals("")) {
+               if (readOnly) {
                        browserWindow.setReadOnly(true);
                        return;
                }
+               
                if (!reload)
                        return;
                
@@ -3542,11 +4217,11 @@ public class NeverNote extends QMainWindow{
                currentNote = conn.getNoteTable().getNote(currentNoteGuid, true,true,false,false,true);
                if (currentNote == null) 
                        return;
-               
                loadNoteBrowserInformation(browserWindow);
        }
+
        private void loadNoteBrowserInformation(BrowserWindow browser) {
-               NoteFormatter formatter = new NoteFormatter(logger, conn, tempFiles);
+               NoteFormatter   formatter = new NoteFormatter(logger, conn, tempFiles);
                formatter.setNote(currentNote, Global.pdfPreview());
                formatter.setHighlight(listManager.getEnSearch());
                QByteArray js;
@@ -3567,23 +4242,48 @@ public class NeverNote extends QMainWindow{
                        js.replace("<?xml version='1.0' encoding='UTF-8'?>", "");
                        browser.getBrowser().setContent(js);
                        noteCache.put(currentNoteGuid, js.toString());
+
+                       if (formatter.resourceError)
+                               resourceErrorMessage();
+                       readOnly = formatter.readOnly;
+                       inkNote = formatter.inkNote;
+                       if (readOnly)
+                               readOnlyCache.put(currentNoteGuid, true);
+                       if (inkNote)
+                               inkNoteCache.put(currentNoteGuid, true);
                } else {
                        logger.log(logger.HIGH, "Note content is being pulled from the cache");
                        String cachedContent = formatter.modifyCachedTodoTags(noteCache.get(currentNoteGuid));
                        js = new QByteArray(cachedContent);
                        browser.getBrowser().setContent(js);
+                       if (readOnlyCache.containsKey(currentNoteGuid))
+                                       readOnly = true;
+                       if (inkNoteCache.containsKey(currentNoteGuid))
+                                       inkNote = true;
                }
                if (conn.getNoteTable().isThumbnailNeeded(currentNoteGuid)) {
                        thumbnailHTMLReady(currentNoteGuid, js, Global.calculateThumbnailZoom(js.toString()));
                }
-
-               if (formatter.resourceError)
-                       resourceErrorMessage();
-               inkNote = formatter.readOnly;
-               
-               browser.getBrowser().page().setContentEditable(!inkNote);  // We don't allow editing of ink notes
+               if (readOnly || inkNote)
+                       browser.getBrowser().page().setContentEditable(false);  // We don't allow editing of ink notes
+               else
+                       browser.getBrowser().page().setContentEditable(true);
+               browser.setReadOnly(readOnly);
+               deleteButton.setEnabled(!readOnly);
+               tagButton.setEnabled(!readOnly);
+               menuBar.noteDelete.setEnabled(!readOnly);
+               menuBar.noteTags.setEnabled(!readOnly);
                browser.setNote(currentNote);
                
+               if (currentNote != null && currentNote.getNotebookGuid() != null && 
+                               conn.getNotebookTable().isLinked(currentNote.getNotebookGuid())) {
+                       deleteButton.setEnabled(false);
+                       menuBar.notebookDeleteAction.setEnabled(false);
+               } else {
+                       deleteButton.setEnabled(true);
+                       menuBar.notebookDeleteAction.setEnabled(true);
+               }
+               
                // Build a list of non-closed notebooks
                List<Notebook> nbooks = new ArrayList<Notebook>();
                for (int i=0; i<listManager.getNotebookIndex().size(); i++) {
@@ -3596,11 +4296,10 @@ public class NeverNote extends QMainWindow{
                                nbooks.add(listManager.getNotebookIndex().get(i));
                }
                
-               browser.setNotebookList(nbooks);
                browser.setTitle(currentNote.getTitle());
                browser.setTag(getTagNamesForNote(currentNote));
                browser.setAuthor(currentNote.getAttributes().getAuthor());
-               
+
                browser.setAltered(currentNote.getUpdated());
                browser.setCreation(currentNote.getCreated());
                if (currentNote.getAttributes().getSubjectDate() > 0)
@@ -3608,7 +4307,11 @@ public class NeverNote extends QMainWindow{
                else
                        browser.setSubjectDate(currentNote.getCreated());
                browser.setUrl(currentNote.getAttributes().getSourceURL());
-               browser.setAllTags(listManager.getTagIndex());
+               
+               FilterEditorTags tagFilter = new FilterEditorTags(conn, logger);
+               List<Tag> tagList = tagFilter.getValidTags(currentNote);
+               browser.setAllTags(tagList);
+               
                browser.setCurrentTags(currentNote.getTagNames());
                noteDirty = false;
                scrollToGuid(currentNoteGuid);
@@ -3616,6 +4319,10 @@ public class NeverNote extends QMainWindow{
                browser.loadingData(false);
                if (thumbnailViewer.isActiveWindow())
                        thumbnailView();
+               
+               FilterEditorNotebooks notebookFilter = new FilterEditorNotebooks(conn, logger);
+               browser.setNotebookList(notebookFilter.getValidNotebooks(currentNote, listManager.getNotebookIndex()));
+
                waitCursor(false);
                logger.log(logger.HIGH, "Leaving NeverNote.refreshEvernoteNote");
        }
@@ -3684,31 +4391,16 @@ public class NeverNote extends QMainWindow{
     @SuppressWarnings("unused")
        private void fullReindex() {
        logger.log(logger.HIGH, "Entering NeverNote.fullReindex");
-       // If we are deleting non-trash notes
-       if (currentNote == null) return;
-       if (currentNote.getDeleted() == 0) { 
-               if (QMessageBox.question(this, tr("Confirmation"), tr("This will cause all notes & attachments to be reindexed, "+
-                               "but please be aware that depending upon the size of your database updating all these records " +
-                               "can be time consuming and NeverNote will be unresponsive until it is complete.  Do you wish to continue?"),
-                               QMessageBox.StandardButton.Yes, 
-                                       QMessageBox.StandardButton.No)==StandardButton.No.value() && Global.verifyDelete() == true) {
-                                                               return;
-               }
-       }
-       waitCursor(true);
-       setMessage(tr("Marking notes for reindex."));
-       conn.getNoteTable().reindexAllNotes();
-       conn.getNoteTable().noteResourceTable.reindexAll(); 
+       indexRunner.addWork("REINDEXALL");
        setMessage(tr("Database will be reindexed."));
-       waitCursor(false);
-       logger.log(logger.HIGH, "Leaving NeverNote.fullRefresh");
+       logger.log(logger.HIGH, "Leaving NeverNote.fullReindex");
     }
     // Listener when a user wants to reindex a specific note
     @SuppressWarnings("unused")
        private void reindexNote() {
        logger.log(logger.HIGH, "Entering NeverNote.reindexNote");
                for (int i=0; i<selectedNoteGUIDs.size(); i++) {
-                       conn.getNoteTable().setIndexNeeded(selectedNoteGUIDs.get(i), true);
+                       indexRunner.addWork("REINDEXNOTE "+selectedNoteGUIDs.get(i));
                }
                if (selectedNotebookGUIDs.size() > 1)
                        setMessage(tr("Notes will be reindexed."));
@@ -3724,11 +4416,23 @@ public class NeverNote extends QMainWindow{
                return;
        if (currentNoteGuid.equals(""))
                return;
-       
+       String title = null;
+       if (selectedNoteGUIDs.size() == 1)
+               title = conn.getNoteTable().getNote(selectedNoteGUIDs.get(0),false,false,false,false,false).getTitle();
+
        // If we are deleting non-trash notes
        if (currentNote.isActive()) { 
                if (Global.verifyDelete()) {
-                       if (QMessageBox.question(this, tr("Confirmation"), tr("Delete selected note(s)?"),
+                       String msg;
+                       if (selectedNoteGUIDs.size() > 1) {
+                               msg = new String(tr("Delete ") +selectedNoteGUIDs.size() +" notes?");
+                       } else {
+                               if (title != null)
+                                       msg = new String(tr("Delete note \"") +title +"\"?");
+                               else                            
+                                       msg = new String(tr("Delete note selected note?"));
+                       }
+                       if (QMessageBox.question(this, tr("Confirmation"), msg,
                                        QMessageBox.StandardButton.Yes, 
                                        QMessageBox.StandardButton.No)==StandardButton.No.value() && Global.verifyDelete() == true) {
                                        return;
@@ -3742,7 +4446,16 @@ public class NeverNote extends QMainWindow{
        } else { 
                // If we are deleting from the trash.
                if (Global.verifyDelete()) {
-                       if (QMessageBox.question(this, "Confirmation", "Permanently delete selected note(s)?",
+                       String msg;
+                       if (selectedNoteGUIDs.size() > 1) {
+                               msg = new String(tr("Permanently delete ") +selectedNoteGUIDs.size() +" notes?");
+                       } else {
+                               if (title != null)
+                               msg = new String(tr("Permanently delete note \"") +title +"\"?");
+                               else
+                                       msg = new String(tr("Permanently delete note selected note?"));
+                       }
+                       if (QMessageBox.question(this, "Confirmation", msg,
                                QMessageBox.StandardButton.Yes, 
                                        QMessageBox.StandardButton.No)==StandardButton.No.value()) {
                                        return;
@@ -3819,7 +4532,8 @@ public class NeverNote extends QMainWindow{
                                }
                        }
                        if (!match)
-                               goodNotebooks.add(listManager.getNotebookIndex().get(i).deepCopy());
+                               //goodNotebooks.add(listManager.getNotebookIndex().get(i).deepCopy());
+                               goodNotebooks.add((Notebook)Global.deepCopy(listManager.getNotebookIndex().get(i)));
                }
                // Now we have a list of good notebooks, so we can look for the default
                        found = false;
@@ -3874,11 +4588,16 @@ public class NeverNote extends QMainWindow{
        
        currentNote = newNote;
        currentNoteGuid = currentNote.getGuid();
+       noteTableView.clearSelection();
        refreshEvernoteNote(true);
        listManager.countNotebookResults(listManager.getNoteIndex());
        browserWindow.titleLabel.setFocus();
        browserWindow.titleLabel.selectAll();
-//     notebookTree.updateCounts(listManager.getNotebookIndex(), listManager.getNotebookCounter());    
+//     notebookTree.updateCounts(listManager.getNotebookIndex(), listManager.getNotebookCounter());
+       
+       // If the window is hidden, then we want to popup this in an external window & 
+       if (!isVisible())
+               listDoubleClick();
        logger.log(logger.HIGH, "Leaving NeverNote.addNote");
     }
     // Restore a note from the trash;
@@ -3906,7 +4625,8 @@ public class NeverNote extends QMainWindow{
        browserWindow.getBrowser().page().findText(find.getText(), find.getFlags());
        find.setFocus();
     }
-    private void updateNoteTitle(String guid, String title) {
+    @SuppressWarnings("unused")
+       private void updateNoteTitle(String guid, String title) {
        listManager.setNoteSynchronized(guid, false);
     }
     // Signal received that note content has changed.  Normally we just need the guid to remove
@@ -3914,36 +4634,44 @@ public class NeverNote extends QMainWindow{
     @SuppressWarnings("unused")
        private void invalidateNoteCache(String guid, String content) {
        String v = noteCache.remove(guid);
-       if (content != null) {
-               //noteCache.put(guid, content);
-       }
+//             if (guid.equals(currentNoteGuid) && !noteDirty)
+                       refreshEvernoteNote(true);
     }
     // Signal received that a note guid has changed
     @SuppressWarnings("unused")
        private void noteGuidChanged(String oldGuid, String newGuid) {
        if (noteCache.containsKey(oldGuid)) {
-               String cache = noteCache.get(oldGuid);
-               noteCache.put(newGuid, cache);
-               noteCache.remove(oldGuid);
+               if (!oldGuid.equals(currentNoteGuid)) {
+                       String cache = noteCache.get(oldGuid);
+                       noteCache.put(newGuid, cache);
+                       noteCache.remove(oldGuid);
+               } else {
+                       noteCache.remove(oldGuid);
+                       noteCache.put(newGuid, browserWindow.getContent());
+               }
        }
+  
        listManager.updateNoteGuid(oldGuid, newGuid, false);
        if (currentNoteGuid.equals(oldGuid)) {
                if (currentNote != null)
                        currentNote.setGuid(newGuid);
                currentNoteGuid = newGuid;
        }
-               if (externalWindows.containsKey(oldGuid)) {
+               
+       if (externalWindows.containsKey(oldGuid)) {
                        ExternalBrowse b = externalWindows.get(oldGuid);
                        externalWindows.remove(oldGuid);
                        b.getBrowserWindow().getNote().setGuid(newGuid);
                        externalWindows.put(newGuid, b);
                }
+
        for (int i=0; i<listManager.getNoteIndex().size(); i++) {
                if (listManager.getNoteIndex().get(i).getGuid().equals(newGuid)) {
                        noteTableView.proxyModel.addGuid(newGuid);
                        i=listManager.getNoteIndex().size();
                }
        }
+       
        if (listManager.getNoteTableModel().titleColors.containsKey(oldGuid)) {
                int color = listManager.getNoteTableModel().titleColors.get(oldGuid);
                listManager.getNoteTableModel().titleColors.put(newGuid, color);
@@ -3996,7 +4724,7 @@ public class NeverNote extends QMainWindow{
     }
     private void duplicateNote(String guid) {
                
-               Note oldNote = conn.getNoteTable().getNote(guid, true, true, false, false, false);
+               Note oldNote = conn.getNoteTable().getNote(guid, true, false,false,false,true);
                List<Resource> resList = conn.getNoteTable().noteResourceTable.getNoteResources(guid, true);
                oldNote.setContent(conn.getNoteTable().getNoteContentBinary(guid));
                oldNote.setResources(resList);
@@ -4010,11 +4738,37 @@ public class NeverNote extends QMainWindow{
                Long l = new Long(currentTime.getTimeInMillis());
                String newGuid = new String(Long.toString(l));
                                        
-               Note newNote = oldNote.deepCopy();
+//             Note newNote = oldNote.deepCopy();
+               Note newNote = (Note)Global.deepCopy(oldNote);
                newNote.setUpdateSequenceNum(0);
                newNote.setGuid(newGuid);
                newNote.setDeleted(0);
                newNote.setActive(true);
+               
+               /*
+               List<String> tagNames = new ArrayList<String>();
+               List<String> tagGuids = new ArrayList<String>();;
+               for (int i=0; i<oldNote.getTagGuidsSize(); i++) {
+                       tagNames.add(oldNote.getTagNames().get(i));
+                       tagGuids.add(oldNote.getTagGuids().get(i));
+               }
+
+               // Sort note Tags to make them look nice
+               for (int i=0; i<tagNames.size()-1; i++) {
+                       if (tagNames.get(i).compareTo(tagNames.get(i+1))<0) {
+                               String n1 = tagNames.get(i);
+                               String n2 = tagNames.get(i+1);
+                               tagNames.set(i, n2);
+                               tagNames.set(i+1, n1);
+                       }
+               }
+               newNote.setTagGuids(tagGuids);
+               newNote.setTagNames(tagNames);
+               
+               // Add tag guids to note
+               */
+               
+               // Duplicate resources
                List<Resource> resList = oldNote.getResources();
                if (resList == null)
                        resList = new ArrayList<Resource>();
@@ -4031,17 +4785,24 @@ public class NeverNote extends QMainWindow{
                        resList.get(i).setGuid(newResGuid);
                        resList.get(i).setUpdateSequenceNum(0);
                        resList.get(i).setActive(true);
-                       conn.getNoteTable().noteResourceTable.saveNoteResource(new Resource(resList.get(i).deepCopy()), true);
+                       conn.getNoteTable().noteResourceTable.saveNoteResource(
+                                       (Resource)Global.deepCopy(resList.get(i)), true);
                }
                newNote.setResources(resList);
+               
+               // Add note to the database
                listManager.addNote(newNote);
                conn.getNoteTable().addNote(newNote, true);
                listManager.getUnsynchronizedNotes().add(newNote.getGuid());
                noteTableView.insertRow(newNote, true, -1);
+               currentNoteGuid = newNote.getGuid();
+               currentNote = newNote;
+               refreshEvernoteNote(true);
                listManager.countNotebookResults(listManager.getNoteIndex());
                waitCursor(false);
        }
        // View all notes
+       @SuppressWarnings("unused")
        private void allNotes() {
                clearAttributeFilter();
                clearNotebookFilter();
@@ -4053,6 +4814,7 @@ public class NeverNote extends QMainWindow{
                        notebookTree.selectGuid("");
                }
                notebookTreeSelection();
+               refreshEvernoteNote(true);
        }
        // Merge notes
        @SuppressWarnings("unused")
@@ -4175,7 +4937,6 @@ public class NeverNote extends QMainWindow{
                }
        }
        private void thumbnailHTMLReady(String guid, QByteArray html, Integer zoom) {
-               
                logger.log(logger.HIGH, "Entering thumnailHTMLReady()");
                logger.log(logger.HIGH, "Thumbnail ready for " +guid);
                // Find an idle preview object
@@ -4212,9 +4973,11 @@ public class NeverNote extends QMainWindow{
     private void setupOnlineMenu() {
        if (!Global.isConnected) {
                menuBar.noteOnlineHistoryAction.setEnabled(false);
+               menuBar.selectiveSyncAction.setEnabled(false);
                return;
        } else {
                menuBar.noteOnlineHistoryAction.setEnabled(true);
+               menuBar.selectiveSyncAction.setEnabled(true);
        }
     }
     @SuppressWarnings("unused")
@@ -4233,10 +4996,10 @@ public class NeverNote extends QMainWindow{
        versions = null;
        try {
                if (Global.isPremium())
-                       versions = syncRunner.noteStore.listNoteVersions(syncRunner.authToken, currentNoteGuid);
+                       versions = syncRunner.localNoteStore.listNoteVersions(syncRunner.authToken, currentNoteGuid);
                else
                        versions = new ArrayList<NoteVersionId>();
-               currentOnlineNote = syncRunner.noteStore.getNote(syncRunner.authToken, currentNoteGuid, true, true, false, false);
+               currentOnlineNote = syncRunner.localNoteStore.getNote(syncRunner.authToken, currentNoteGuid, true, true, false, false);
                } catch (EDAMUserException e) {
                        setMessage("EDAMUserException: " +e.getMessage());
                        return;
@@ -4291,9 +5054,9 @@ public class NeverNote extends QMainWindow{
                        try {
                                if (index > -1) {
                                        usn = versions.get(index).getUpdateSequenceNum();
-                                       historyNote = syncRunner.noteStore.getNoteVersion(syncRunner.authToken, currentNoteGuid, usn, true, true, true);
+                                       historyNote = syncRunner.localNoteStore.getNoteVersion(syncRunner.authToken, currentNoteGuid, usn, true, true, true);
                                } else
-                                       historyNote = syncRunner.noteStore.getNote(syncRunner.authToken, currentNoteGuid, true,true,true,true);
+                                       historyNote = syncRunner.localNoteStore.getNote(syncRunner.authToken, currentNoteGuid, true,true,true,true);
                        } catch (EDAMUserException e) {
                                setMessage("EDAMUserException: " +e.getMessage());
                                waitCursor(false);
@@ -4346,7 +5109,138 @@ public class NeverNote extends QMainWindow{
        refreshEvernoteNote(true);
        setMessage(tr("Note has been restored."));
     }
-    
+    @SuppressWarnings("unused")
+       private void setupSelectiveSync() {
+       
+       // Get a list of valid notebooks
+       List<Notebook> notebooks = null; 
+       List<Tag> tags = null;
+       List<LinkedNotebook> linkedNotebooks = null;
+       try {
+                       notebooks = syncRunner.localNoteStore.listNotebooks(syncRunner.authToken);
+                       tags = syncRunner.localNoteStore.listTags(syncRunner.authToken);
+                       linkedNotebooks = syncRunner.localNoteStore.listLinkedNotebooks(syncRunner.authToken);
+               } catch (EDAMUserException e) {
+                       setMessage("EDAMUserException: " +e.getMessage());
+                       return;
+               } catch (EDAMSystemException e) {
+                       setMessage("EDAMSystemException: " +e.getMessage());
+                       return;
+               } catch (TException e) {
+                       setMessage("EDAMTransactionException: " +e.getMessage());
+                       return;
+               } catch (EDAMNotFoundException e) {
+                       setMessage("EDAMNotFoundException: " +e.getMessage());
+                       return;
+               }
+       
+               // Split up notebooks into synchronized & non-synchronized
+       List<Notebook> ignoredBooks = new ArrayList<Notebook>();
+       List<String> dbIgnoredNotebooks = conn.getSyncTable().getIgnoreRecords("NOTEBOOK");
+       
+       for (int i=notebooks.size()-1; i>=0; i--) {
+               for (int j=0; j<dbIgnoredNotebooks.size(); j++) {
+                       if (notebooks.get(i).getGuid().equalsIgnoreCase(dbIgnoredNotebooks.get(j))) {
+                               ignoredBooks.add(notebooks.get(i));
+                               j=dbIgnoredNotebooks.size();
+                       }
+               }
+       }
+       
+       // split up tags into synchronized & non-synchronized
+       List<Tag> ignoredTags = new ArrayList<Tag>();
+       List<String> dbIgnoredTags = conn.getSyncTable().getIgnoreRecords("TAG");
+       
+       for (int i=tags.size()-1; i>=0; i--) {
+               for (int j=0; j<dbIgnoredTags.size(); j++) {
+                       if (tags.get(i).getGuid().equalsIgnoreCase(dbIgnoredTags.get(j))) {
+                               ignoredTags.add(tags.get(i));
+                               j=dbIgnoredTags.size();
+                       }
+               }
+       }
+       
+       // split up linked notebooks into synchronized & non-synchronized
+       List<LinkedNotebook> ignoredLinkedNotebooks = new ArrayList<LinkedNotebook>();
+       List<String> dbIgnoredLinkedNotebooks = conn.getSyncTable().getIgnoreRecords("LINKEDNOTEBOOK");
+       for (int i=linkedNotebooks.size()-1; i>=0; i--) {
+               String notebookGuid = linkedNotebooks.get(i).getGuid();
+               for (int j=0; j<dbIgnoredLinkedNotebooks.size(); j++) {
+                       if (notebookGuid.equalsIgnoreCase(dbIgnoredLinkedNotebooks.get(j))) {
+                               ignoredLinkedNotebooks.add(linkedNotebooks.get(i));
+                               j=dbIgnoredLinkedNotebooks.size();
+                       }
+               }
+       }
+       
+               IgnoreSync ignore = new IgnoreSync(notebooks, ignoredBooks, tags, ignoredTags, linkedNotebooks, ignoredLinkedNotebooks);
+               ignore.exec();
+               if (!ignore.okClicked())
+                       return;
+               
+               waitCursor(true);
+               
+               // Clear out old notebooks & add  the new ones
+               List<String> oldIgnoreNotebooks = conn.getSyncTable().getIgnoreRecords("NOTEBOOK");
+               for (int i=0; i<oldIgnoreNotebooks.size(); i++) {
+                       conn.getSyncTable().deleteRecord("IGNORENOTEBOOK-"+oldIgnoreNotebooks.get(i));
+               }
+               
+               List<String> newNotebooks = new ArrayList<String>();
+               for (int i=ignore.getIgnoredBookList().count()-1; i>=0; i--) {
+                       String text = ignore.getIgnoredBookList().takeItem(i).text();
+                       for (int j=0; j<notebooks.size(); j++) {
+                               if (notebooks.get(j).getName().equalsIgnoreCase(text)) {
+                                       Notebook n = notebooks.get(j);
+                                       conn.getSyncTable().addRecord("IGNORENOTEBOOK-"+n.getGuid(), n.getGuid());
+                                       j=notebooks.size();
+                                       newNotebooks.add(n.getGuid());
+                               }
+                       }
+               }
+               
+               // Clear out old tags & add new ones
+               List<String> oldIgnoreTags = conn.getSyncTable().getIgnoreRecords("TAG");
+               for (int i=0; i<oldIgnoreTags.size(); i++) {
+                       conn.getSyncTable().deleteRecord("IGNORETAG-"+oldIgnoreTags.get(i));
+               }
+               
+               List<String> newTags = new ArrayList<String>();
+               for (int i=ignore.getIgnoredTagList().count()-1; i>=0; i--) {
+                       String text = ignore.getIgnoredTagList().takeItem(i).text();
+                       for (int j=0; j<tags.size(); j++) {
+                               if (tags.get(j).getName().equalsIgnoreCase(text)) {
+                                       Tag t = tags.get(j);
+                                       conn.getSyncTable().addRecord("IGNORETAG-"+t.getGuid(), t.getGuid());
+                                       newTags.add(t.getGuid());
+                                       j=tags.size();
+                               }
+                       }
+               }
+               
+               // Clear out old tags & add new ones
+               List<String> oldIgnoreLinkedNotebooks = conn.getSyncTable().getIgnoreRecords("LINKEDNOTEBOOK");
+               for (int i=0; i<oldIgnoreLinkedNotebooks.size(); i++) {
+                       conn.getSyncTable().deleteRecord("IGNORELINKEDNOTEBOOK-"+oldIgnoreLinkedNotebooks.get(i));
+               }
+               
+               List<String> newLinked = new ArrayList<String>();
+               for (int i=ignore.getIgnoredLinkedNotebookList().count()-1; i>=0; i--) {
+                       String text = ignore.getIgnoredLinkedNotebookList().takeItem(i).text();
+                       for (int j=0; j<linkedNotebooks.size(); j++) {
+                               if (linkedNotebooks.get(j).getShareName().equalsIgnoreCase(text)) {
+                                       LinkedNotebook t = linkedNotebooks.get(j);
+                                       conn.getSyncTable().addRecord("IGNORELINKEDNOTEBOOK-"+t.getGuid(), t.getGuid());
+                                       newLinked.add(t.getGuid());
+                                       j=linkedNotebooks.size();
+                               }
+                       }
+               }
+               
+               conn.getNoteTable().expungeIgnoreSynchronizedNotes(newNotebooks, newTags, newLinked);
+               waitCursor(false);
+               refreshLists();
+    }
     
     
        //**********************************************************
@@ -4397,6 +5291,7 @@ public class NeverNote extends QMainWindow{
                        syncRunner.syncDeletedContent = Global.synchronizeDeletedContent();
                        
                        if (syncThreadsReady > 0) {
+                               thumbnailRunner.interrupt = true;
                                saveNoteIndexWidth();
                                saveNoteColumnPositions();
                                if (syncRunner.addWork("SYNC")) {
@@ -4445,6 +5340,7 @@ public class NeverNote extends QMainWindow{
        }
        public void refreshLists() {
                logger.log(logger.EXTREME, "Entering NeverNote.refreshLists");
+               System.out.println("<><><><><><><><><><><><><><><><><><><><>");
                updateQuotaBar();
                listManager.refreshLists(currentNote, noteDirty, browserWindow.getContent());
                tagIndexUpdated(true);
@@ -4500,66 +5396,20 @@ public class NeverNote extends QMainWindow{
                logger.log(logger.EXTREME, "Index timer activated.  Sync running="+syncRunning);
                if (syncRunning) 
                        return;
-               // Look for any unindexed notes.  We only refresh occasionally 
-               // and do one at a time to keep overhead down.
-               if (!indexDisabled && indexRunner.getWorkQueueSize() == 0) { 
-                       List<String> notes = conn.getNoteTable().getNextUnindexed(1);
-                       String unindexedNote = null;
-                       if (notes.size() > 0)
-                               unindexedNote = notes.get(0);
-                       if (unindexedNote != null && Global.keepRunning) {
-                               indexNoteContent(unindexedNote);
-                       }
-                       if (notes.size()>0) {
-                               indexTimer.setInterval(100);
-                               return;
-                       }
-                       List<String> unindexedResources = conn.getNoteTable().noteResourceTable.getNextUnindexed(1);
-                       if (unindexedResources.size() > 0 && indexRunner.getWorkQueueSize() == 0) {
-                               String unindexedResource = unindexedResources.get(0);
-                               if (unindexedResource != null && Global.keepRunning) {
-                                       indexNoteResource(unindexedResource);
-                               }
-                       }
-                       if (unindexedResources.size() > 0) {
-                               indexTimer.setInterval(100);
-                               return;
-                       } else {
-                               indexTimer.setInterval(indexTime);
-                       }
-                       if (indexRunning) {
-                               setMessage(tr("Index completed."));
-                               logger.log(logger.LOW, "Indexing has completed.");
-                               indexRunning = false;
-                               indexTimer.setInterval(indexTime);
-                       }
+               if (!indexDisabled && indexRunner.idle) { 
+                       thumbnailRunner.interrupt = true;
+                       indexRunner.addWork("SCAN");
                }
                logger.log(logger.EXTREME, "Leaving neverNote index timer");
        }
-       private synchronized void indexNoteContent(String unindexedNote) {
-               logger.log(logger.EXTREME, "Entering NeverNote.indexNoteContent()");
-               logger.log(logger.MEDIUM, "Unindexed Note found: "+unindexedNote);
-               indexRunner.setIndexType(indexRunner.CONTENT);
-               indexRunner.addWork("CONTENT "+unindexedNote);
-               if (!indexRunning) {
-                       setMessage(tr("Indexing notes."));
-                       logger.log(logger.LOW, "Beginning to index note contents.");
-                       indexRunning = true;
-               }
-               logger.log(logger.EXTREME, "Leaving NeverNote.indexNoteContent()");
-       }
-       private synchronized void indexNoteResource(String unindexedResource) {
-               logger.log(logger.EXTREME, "Leaving NeverNote.indexNoteResource()");
-               indexRunner.addWork(new String("RESOURCE "+unindexedResource));
-               if (!indexRunning) {
-                       setMessage(tr("Indexing notes."));
-                       indexRunning = true;
-               }
-               logger.log(logger.EXTREME, "Leaving NeverNote.indexNoteResource()");
+
+       @SuppressWarnings("unused")
+       private void indexStarted() {
+               setMessage(tr("Indexing notes"));
        }
        @SuppressWarnings("unused")
-       private void indexThreadComplete(String guid) {
-               logger.log(logger.MEDIUM, "Index complete for "+guid);
+       private void indexComplete() {
+               setMessage(tr("Index complete"));
        }
        @SuppressWarnings("unused")
        private synchronized void toggleNoteIndexing() {
@@ -4582,47 +5432,64 @@ public class NeverNote extends QMainWindow{
                alive = listManager.threadCheck(Global.tagCounterThreadId);
                if (!alive) {
                        tagDeadCount++;
-                       if (tagDeadCount > MAX)
+                       if (tagDeadCount > MAX && !disableTagThreadCheck) {
                                QMessageBox.information(this, tr("A thread his died."), tr("It appears as the tag counter thread has died.  I recommend "+
                                "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                               disableTagThreadCheck = true;
+                       }
                } else
                        tagDeadCount=0;
                
                alive = listManager.threadCheck(Global.notebookCounterThreadId);
                if (!alive) {
                        notebookThreadDeadCount++;
-                       QMessageBox.information(this, tr("A thread his died."), tr("It appears as the notebook counter thread has died.  I recommend "+
-                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                       if (notebookThreadDeadCount > MAX && !disableNotebookThreadCheck) {
+                               QMessageBox.information(this, tr("A thread his died."), tr("It appears as the notebook counter thread has died.  I recommend "+
+                                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                               disableNotebookThreadCheck=true;
+                       }
                } else
                        notebookThreadDeadCount=0;
                
                alive = listManager.threadCheck(Global.trashCounterThreadId);
                if (!alive) {
                        trashDeadCount++;
-                       QMessageBox.information(this, tr("A thread his died."), ("It appears as the trash counter thread has died.  I recommend "+
-                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                       if (trashDeadCount > MAX && !disableTrashThreadCheck) {
+                               QMessageBox.information(this, tr("A thread his died."), ("It appears as the trash counter thread has died.  I recommend "+
+                                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                               disableTrashThreadCheck = true;
+                       }
                } else
                        trashDeadCount = 0;
 
                alive = listManager.threadCheck(Global.saveThreadId);
                if (!alive) {
                        saveThreadDeadCount++;
-                       QMessageBox.information(this, tr("A thread his died."), tr("It appears as the note saver thread has died.  I recommend "+
-                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                       if (saveThreadDeadCount > MAX && !disableSaveThreadCheck) {
+                               QMessageBox.information(this, tr("A thread his died."), tr("It appears as the note saver thread has died.  I recommend "+
+                                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                               disableSaveThreadCheck = true;
+                       }
                } else
                        saveThreadDeadCount=0;
 
                if (!syncThread.isAlive()) {
                        syncThreadDeadCount++;
-                       QMessageBox.information(this, tr("A thread his died."), tr("It appears as the synchronization thread has died.  I recommend "+
-                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                       if (syncThreadDeadCount > MAX && !disableSyncThreadCheck) {
+                               QMessageBox.information(this, tr("A thread his died."), tr("It appears as the synchronization thread has died.  I recommend "+
+                                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                               disableSyncThreadCheck = true;
+                       }
                } else
                        syncThreadDeadCount=0;
 
                if (!indexThread.isAlive()) {
                        indexThreadDeadCount++;
-                       QMessageBox.information(this, tr("A thread his died."), tr("It appears as the index thread has died.  I recommend "+
-                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                       if (indexThreadDeadCount > MAX && !disableIndexThreadCheck) {
+                               QMessageBox.information(this, tr("A thread his died."), tr("It appears as the index thread has died.  I recommend "+
+                                       "checking stopping NeverNote, saving the logs for later viewing, and restarting.  Sorry."));
+                               disableIndexThreadCheck = true;
+                       }
                } else
                        indexThreadDeadCount=0;
 
@@ -4630,8 +5497,9 @@ public class NeverNote extends QMainWindow{
        }
 
        private void thumbnailTimer() {
-               if (Global.enableThumbnails())
+               if (Global.enableThumbnails() && !syncRunning && indexRunner.idle) {
                        thumbnailRunner.addWork("SCAN");
+               }
        }
        
        //**************************************************
@@ -4645,13 +5513,18 @@ public class NeverNote extends QMainWindow{
                fd.setWindowTitle(tr("Backup Database"));
                fd.setFilter(tr("NeverNote Export (*.nnex);;All Files (*.*)"));
                fd.setAcceptMode(AcceptMode.AcceptSave);
-               fd.setDirectory(System.getProperty("user.home"));
+               if (saveLastPath == null || saveLastPath.equals(""))
+                       fd.setDirectory(System.getProperty("user.home"));
+               else
+                       fd.setDirectory(saveLastPath);
                if (fd.exec() == 0 || fd.selectedFiles().size() == 0) {
                        return;
                }
                
                
        waitCursor(true);
+       saveLastPath = fd.selectedFiles().get(0);
+       saveLastPath = saveLastPath.substring(0,saveLastPath.lastIndexOf("/"));
        setMessage(tr("Backing up database"));
        saveNote();
 //     conn.backupDatabase(Global.getUpdateSequenceNumber(), Global.getSequenceDate());
@@ -4686,13 +5559,19 @@ public class NeverNote extends QMainWindow{
                fd.setWindowTitle(tr("Restore Database"));
                fd.setFilter(tr("NeverNote Export (*.nnex);;All Files (*.*)"));
                fd.setAcceptMode(AcceptMode.AcceptOpen);
-               fd.setDirectory(System.getProperty("user.home"));
+               if (saveLastPath == null || saveLastPath.equals(""))
+                       fd.setDirectory(System.getProperty("user.home"));
+               else
+                       fd.setDirectory(saveLastPath);
                if (fd.exec() == 0 || fd.selectedFiles().size() == 0) {
                        return;
                }
                
                
                waitCursor(true);
+       saveLastPath = fd.selectedFiles().get(0);
+       saveLastPath = saveLastPath.substring(0,saveLastPath.lastIndexOf("/"));
+
                setMessage(tr("Restoring database"));
        ImportData noteReader = new ImportData(conn, true);
        noteReader.importData(fd.selectedFiles().get(0));
@@ -4751,7 +5630,10 @@ public class NeverNote extends QMainWindow{
                fd.setWindowTitle(tr("Import Notes"));
                fd.setFilter(tr("NeverNote Export (*.nnex);;All Files (*.*)"));
                fd.setAcceptMode(AcceptMode.AcceptOpen);
-               fd.setDirectory(System.getProperty("user.home"));
+               if (saveLastPath == null || saveLastPath.equals(""))
+                       fd.setDirectory(System.getProperty("user.home"));
+               else
+                       fd.setDirectory(saveLastPath);
                if (fd.exec() == 0 || fd.selectedFiles().size() == 0) {
                        return;
                }
@@ -4766,6 +5648,7 @@ public class NeverNote extends QMainWindow{
                
        ImportData noteReader = new ImportData(conn, false);
        String fileName = fd.selectedFiles().get(0);
+//     saveLastPath.substring(0,fileName.lastIndexOf("/"));
 
        if (!fileName.endsWith(".nnex"))
                fileName = fileName +".nnex";
@@ -5149,4 +6032,29 @@ public class NeverNote extends QMainWindow{
                        return true;
        }
 
+       
+       //*************************************************
+       // Block the program.  This is used for things  
+       // like async web calls.
+       //*************************************************
+       @SuppressWarnings("unused")
+       private void blockApplication(Long time) {
+               Calendar currentTime = new GregorianCalendar();
+               waitCursor(true);
+               blockTime = new Long(currentTime.getTimeInMillis())+time;
+
+               for (;currentTime.getTimeInMillis()>blockTime;) {
+                       try {
+                               wait(1);
+                       } catch (InterruptedException e) {
+                               e.printStackTrace();
+                       }
+                       waitCursor(false);
+               }
+               
+       }
+       @SuppressWarnings("unused")
+       private void unblockApplication() {
+               blockTime = -1;
+       }
 }